Citrus Sinensis ID: 026750

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MSVSLNANLYQPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHccEEEccccccHHHHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccHcHEEEcccccccccccccccccccHHHcccccEEEccccccccccccccccccccccEEEEccccccHHHHHcHHHHHHcccEEEEEccEcHHHHHHHHHHHHHHHHHcccccEEEEEEEccEcHHHHHHHHHHHHHccccEEEEEEEEEEcHHHHHHHccccccEEEccccEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
msvslnanlyqpslscnlklfsglkiqspsvfgtgkpnlsaeFYGRVHKSLYsgirndkpirgriammpigtpkvlyrtpgegswQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLdsvddskrVYMYingpggdvtptLAIYDTMqslkspvgthcVGFAYHLAGFLlaggekgnrsamplsrialdspagaargqaDDIRNEADELLRVRDYIFKELsrktdyegfk
Flexible Loop (DISEMBL)
msvslnanlyqPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYsgirndkpirgrIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALdspagaargqaddIRNEADELLRVRDYIfkelsrktdyegfk
Low Complexity Region (SEG)
MSVSLNANLYQPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK
Disordered region (IsUnstruct)
********LYQPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG**********************************ELLRVRDYIFKE***********
Disordered Region (DISOPRED)
**************SCNLKLFSGLKI****************F*********************IAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT******
Disordered Region (DISEMBL)
MSVSLNANLYQPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDS********ADDIRNEADELLRVRDYIFKELSRKTDYEGFK
Disordered Region (DISPRO)
*SVSLNANLYQPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRN***IRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVSLNANLYQPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
Q9XJ36	279	ATP-dependent Clp proteas	yes	no	0.965	0.810	0.734	1e-96
Q8DJZ9	198	ATP-dependent Clp proteas	yes	no	0.641	0.757	0.593	3e-47
Q8YP43	197	Probable ATP-dependent Cl	yes	no	0.641	0.761	0.573	2e-45
Q3MDK7	197	ATP-dependent Clp proteas	yes	no	0.641	0.761	0.573	3e-45
Q20F17	195	ATP-dependent Clp proteas	N/A	no	0.688	0.825	0.509	4e-45
P56317	201	ATP-dependent Clp proteas	N/A	no	0.688	0.800	0.496	8e-44
Q3ZJ12	198	ATP-dependent Clp proteas	N/A	no	0.688	0.813	0.496	7e-43
Q7NEW2	197	ATP-dependent Clp proteas	yes	no	0.683	0.812	0.503	3e-42
Q9L4P3	199	ATP-dependent Clp proteas	yes	no	0.688	0.809	0.493	8e-41
Q5N1Q7	199	ATP-dependent Clp proteas	yes	no	0.688	0.809	0.493	8e-41

>sp|Q9XJ36|CLPR2_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana GN=CLPR2 PE=1 SV=1

 Score =  352 bits (902), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/230 (73%), Positives = 196/230 (85%), Gaps = 4/230 (1%)

Query: 1   MSVSLNANLYQPSLS--CNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRND 58
           M+VS N  L+QPSLS  C++KL+SGLK QS S   +G  NL+ EFYGRV+KSL SG    
Sbjct: 1   MAVSFNTTLHQPSLSPSCSIKLYSGLKPQSASFLASGYQNLNKEFYGRVYKSLQSG--TG 58

Query: 59  KPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATM 118
           K  R R+ MMPIGTP+V YR   EG+WQWVD+WNALYRERVIFIGQNIDEEFSNQILATM
Sbjct: 59  KASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATM 118

Query: 119 LYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178
           LYLD++DDS+R+YMY+NGPGGD+TP+LAIYDTM+SLKSPVGTHCVG AY+LAGFLLA GE
Sbjct: 119 LYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGE 178

Query: 179 KGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           KG+R AMPLSRIAL SPAGAARGQADDI+NEA EL R+RDY+F EL++ T
Sbjct: 179 KGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNT 228

Required for chloroplast development and integrity. Involved in the regulation of plastoglobules formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8DJZ9|CLPP2_THEEB ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1

 Score =  188 bits (477), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 108/150 (72%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG PKV YR PGE   QW+D++N LYRER+IF+G+ +D+E +NQI+A MLYLDS D  
Sbjct: 1   MPIGVPKVPYRLPGEPYTQWIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPG 60

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K + +YIN PGG VT  +AIYDTMQ +KS V T CVG A  +  FLLA G KG R A+P 
Sbjct: 61  KDIMLYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPH 120

Query: 188 SRIALDSPAGAARGQADDIRNEADELLRVR 217
           SRI +  P+G  RGQA DI  EA E+LRVR
Sbjct: 121 SRIMIHQPSGGTRGQATDIEIEAREILRVR 150

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q8YP43|CLPP3_NOSS1 Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=clpP3 PE=3 SV=1

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 107/150 (71%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG PKV YR PG     W+ +++ LYRER+IF+G+++D+E +NQI+A MLYLDS D  
Sbjct: 1   MPIGVPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPG 60

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K +Y+YIN PGG VT  LAIYDTMQ +KS V T CVG A  +  FLLA G KG R A+P 
Sbjct: 61  KDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPH 120

Query: 188 SRIALDSPAGAARGQADDIRNEADELLRVR 217
           SRI +  P+G  RGQA DI  EA E+LR+R
Sbjct: 121 SRIMIHQPSGGTRGQATDIEIEAREILRIR 150

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q3MDK7|CLPP2_ANAVT ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP2 PE=3 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 107/150 (71%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG PKV YR PG     W+ +++ LYRER+IF+G+++D+E +NQI+A MLYLDS D  
Sbjct: 1   MPIGVPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPG 60

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K +Y+YIN PGG VT  LAIYDTMQ +KS V T CVG A  +  FLLA G KG R A+P 
Sbjct: 61  KDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPH 120

Query: 188 SRIALDSPAGAARGQADDIRNEADELLRVR 217
           SRI +  P+G  RGQA DI  EA E+LR+R
Sbjct: 121 SRIMIHQPSGGTRGQATDIEIEAREILRIR 150

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q20F17|CLPP_OLTVI ATP-dependent Clp protease proteolytic subunit OS=Oltmannsiellopsis viridis GN=clpP PE=3 SV=1

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 119/161 (73%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG PKV +R PGE S QWVDL+N LYRERV+F+ Q++D+E +NQ++  MLYL++ + S
Sbjct: 1   MPIGVPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEEKS 60

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K +Y+YIN PGG VT  +A+YDTM  +K+ V T CVG A  +A F+LAGG +G R A+P 
Sbjct: 61  KDLYIYINSPGGSVTCGIAVYDTMNYIKADVTTICVGTAASMASFVLAGGTQGKRIALPH 120

Query: 188 SRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           SRI +  P G +RGQA ++ +E++E++R+R  + K  +++T
Sbjct: 121 SRIMIHQPEGGSRGQASEVLSESEEVMRIRRQVGKIYAQRT 161

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Oltmannsiellopsis viridis (taxid: 51324)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|P56317|CLPP_CHLVU ATP-dependent Clp protease proteolytic subunit OS=Chlorella vulgaris GN=clpP PE=3 SV=1

 Score =  177 bits (448), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 116/161 (72%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG PKV +R PGE S QWVDL+N LYRERV+F+ Q +D+E +NQ++  MLYL++ + +
Sbjct: 1   MPIGVPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQN 60

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K +Y+YIN PGG VT  +A+YD M  +KS V T CVG A  +A F+LAGG++G R A+P 
Sbjct: 61  KGLYIYINSPGGSVTCGIAVYDAMNYIKSEVTTICVGTAASMASFILAGGDRGKRIALPH 120

Query: 188 SRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           SRI +  P G ++GQA ++ +E+ E++R+R  + +  S +T
Sbjct: 121 SRIMVHQPEGGSQGQASEVLSESQEVMRIRRQVGRIYSERT 161

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Chlorella vulgaris (taxid: 3077)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q3ZJ12|CLPP_PSEAK ATP-dependent Clp protease proteolytic subunit OS=Pseudendoclonium akinetum GN=clpP PE=3 SV=1

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 113/161 (70%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG PKV YR  G    +WVDL+N LYRERV+F+ Q++D+E +NQ++  MLYL++ D S
Sbjct: 1   MPIGVPKVPYRLAGNEVAEWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEDKS 60

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K +Y+YIN PGG VT  + ++D M  +KS V T CVG A  +A F+LAGG KG R A+P 
Sbjct: 61  KGIYVYINSPGGSVTCGVGVFDAMNYIKSDVTTICVGTAASMASFVLAGGRKGKRLALPH 120

Query: 188 SRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           SRI +  P G ++GQA  + +E++E+LR+RD + +  S +T
Sbjct: 121 SRIMIHQPEGGSQGQASVVLSESEEVLRIRDEVAQIYSERT 161

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Pseudendoclonium akinetum (taxid: 160070)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q7NEW2|CLPP1_GLOVI ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter violaceus (strain PCC 7421) GN=clpP1 PE=3 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG PKV YR PG G  QW+D++N L  +R+IF+G+ +D+E +N I+A+MLYLDS D  
Sbjct: 1   MPIGIPKVPYRLPG-GQSQWIDIFNRLALDRIIFLGREVDDEIANAIIASMLYLDSEDPE 59

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K +++YIN PGG V+  LAIYDTMQ +++ V T CVG A  +  FLL  G KG R+++P 
Sbjct: 60  KDIFLYINSPGGSVSAGLAIYDTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPH 119

Query: 188 SRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           SRI +  P G A+GQA DI  +A E+L  +D + + LS +T
Sbjct: 120 SRIMIHQPLGGAQGQATDIGIQAKEILYTKDRLNQILSERT 160

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q9L4P3|CLPP3_SYNE7 ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP3 PE=3 SV=1

 Score =  167 bits (422), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 107/162 (66%), Gaps = 1/162 (0%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG P V YR PG    +W+D++N L  ER+IF+GQ + +  +N I+A +LYLDS D S
Sbjct: 1   MPIGVPSVPYRLPGSSFERWIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSS 60

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K +Y+YIN PGG VT  +AIYDTMQ +KSPV T C+G A  +  FLL  G KG R A+P 
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPH 120

Query: 188 SRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           SRI +  P  G  R QA DI  EA E+LR++  + + ++ +T
Sbjct: 121 SRIMIHQPLGGTGRRQASDIEIEAKEILRIKKLLNQIMADRT 162

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q5N1Q7|CLPP2_SYNP6 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP2 PE=3 SV=1

 Score =  167 bits (422), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 107/162 (66%), Gaps = 1/162 (0%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG P V YR PG    +W+D++N L  ER+IF+GQ + +  +N I+A +LYLDS D S
Sbjct: 1   MPIGVPSVPYRLPGSSFERWIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSS 60

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K +Y+YIN PGG VT  +AIYDTMQ +KSPV T C+G A  +  FLL  G KG R A+P 
Sbjct: 61  KPIYLYINSPGGSVTAGMAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPH 120

Query: 188 SRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           SRI +  P  G  R QA DI  EA E+LR++  + + ++ +T
Sbjct: 121 SRIMIHQPLGGTGRRQASDIEIEAKEILRIKKLLNQIMADRT 162

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
224125072	279	predicted protein [Populus trichocarpa]	0.974	0.817	0.793	1e-107
255537123	279	ATP-dependent Clp protease proteolytic s	0.974	0.817	0.789	1e-106
225470285	291	PREDICTED: ATP-dependent Clp protease pr	0.931	0.749	0.766	8e-98
297844106	279	hypothetical protein ARALYDRAFT_471391 [	0.965	0.810	0.739	2e-95
356563278	285	PREDICTED: ATP-dependent Clp protease pr	0.927	0.761	0.741	5e-95
18391391	279	ATP-dependent Clp protease, protease sub	0.965	0.810	0.734	8e-95
356514168	312	PREDICTED: ATP-dependent Clp protease pr	0.914	0.685	0.747	3e-94
16209712	279	At1g12410/F5O11_7 [Arabidopsis thaliana]	0.965	0.810	0.730	6e-94
449459668	285	PREDICTED: ATP-dependent Clp protease pr	0.931	0.764	0.729	7e-93
357477011	341	ATP-dependent Clp protease proteolytic s	0.935	0.642	0.671	7e-86

>gi|224125072|ref|XP_002329885.1| predicted protein [Populus trichocarpa] gi|222871122|gb|EEF08253.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/228 (79%), Positives = 208/228 (91%)

Query: 1   MSVSLNANLYQPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKP 60
           M+ SLNANL QPSLSC  KL+SGLK+Q PS++ TG+PNL+AEFYG+V+KSL  G RN KP
Sbjct: 1   MASSLNANLSQPSLSCGAKLYSGLKLQFPSLYATGRPNLTAEFYGKVNKSLQCGTRNHKP 60

Query: 61  IRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLY 120
            R  + MMPIGTP+V YRTPGEG+WQWVD+WNALYRER++FIGQNIDEEFSNQILATMLY
Sbjct: 61  TRAAVKMMPIGTPRVPYRTPGEGTWQWVDIWNALYRERILFIGQNIDEEFSNQILATMLY 120

Query: 121 LDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKG 180
           LD++DDSKR+Y+YINGPGGD+TP+LAIYDTMQSLKSPVGTHCVGFAY+LAGFLL  GEKG
Sbjct: 121 LDTIDDSKRMYLYINGPGGDLTPSLAIYDTMQSLKSPVGTHCVGFAYNLAGFLLTAGEKG 180

Query: 181 NRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           NRSAMPLSRIAL SPAGAARGQADDI NEA+ELLR+RDY++ ELS+KT
Sbjct: 181 NRSAMPLSRIALQSPAGAARGQADDICNEANELLRIRDYLYNELSKKT 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537123|ref|XP_002509628.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223549527|gb|EEF51015.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/228 (78%), Positives = 206/228 (90%)

Query: 1   MSVSLNANLYQPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKP 60
           M+  LN NL QPSLSC  KL+SGLK+QSPS++ TG+PNL+AEFYGRV+KSL  G R+   
Sbjct: 1   MAFCLNTNLNQPSLSCGTKLYSGLKLQSPSLYATGRPNLTAEFYGRVNKSLQCGTRSHSA 60

Query: 61  IRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLY 120
           I   + MMPIGTP+V YRTPGEG+WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLY
Sbjct: 61  IHAGVRMMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLY 120

Query: 121 LDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKG 180
           LD++DD+KR+Y YINGPGGD+TPTLAIYDTMQSLKSPVGTHCVGFAY+LAGF+LA GEKG
Sbjct: 121 LDTIDDNKRIYFYINGPGGDLTPTLAIYDTMQSLKSPVGTHCVGFAYNLAGFILAAGEKG 180

Query: 181 NRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           NRSAMPLSRIAL SPAGAARGQADDIRNEA+ELLR++DY++ EL++KT
Sbjct: 181 NRSAMPLSRIALQSPAGAARGQADDIRNEANELLRIKDYLYNELAKKT 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470285|ref|XP_002266380.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Vitis vinifera] gi|147794105|emb|CAN62361.1| hypothetical protein VITISV_031921 [Vitis vinifera] gi|297742668|emb|CBI34817.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (928), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 167/218 (76%), Positives = 192/218 (88%)

Query: 11  QPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPI 70
           QP LSC  KLFSGLK+QS S FGTGKPNL+ EF+ +VHKS+ S   + K  R R+ MMPI
Sbjct: 23  QPPLSCATKLFSGLKLQSASTFGTGKPNLTVEFFNKVHKSVQSRTSDSKSTRARVRMMPI 82

Query: 71  GTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRV 130
           GTP+V YRTPGEG+WQWVDLWNALYRERVI+IGQ+IDEEFSNQ+LATMLYLDS++ SKR+
Sbjct: 83  GTPRVPYRTPGEGTWQWVDLWNALYRERVIYIGQHIDEEFSNQLLATMLYLDSIESSKRM 142

Query: 131 YMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRI 190
           + YIN PGGD+TP+LAIYDTMQSLKSPVGT+C+GFAY+LA FLLA GEKGNR AMPLSRI
Sbjct: 143 FFYINSPGGDLTPSLAIYDTMQSLKSPVGTNCLGFAYNLATFLLAAGEKGNRLAMPLSRI 202

Query: 191 ALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           AL SPAGAARGQADDIRNEA+ELLR+RDY+F EL+ KT
Sbjct: 203 ALQSPAGAARGQADDIRNEANELLRIRDYLFSELANKT 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844106|ref|XP_002889934.1| hypothetical protein ARALYDRAFT_471391 [Arabidopsis lyrata subsp. lyrata] gi|297335776|gb|EFH66193.1| hypothetical protein ARALYDRAFT_471391 [Arabidopsis lyrata subsp. lyrata]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 4/230 (1%)

Query: 1   MSVSLNANLYQPSLS--CNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRND 58
           M+VS N  L+QPSLS  C++KL+SGLK QS S   +G  NL+ EFYGRVHKSL SG    
Sbjct: 1   MAVSFNTTLHQPSLSPSCSIKLYSGLKPQSASFITSGYQNLNKEFYGRVHKSLQSG--TG 58

Query: 59  KPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATM 118
           K  R R+ MMPIGTP+V YR   EG+WQWVD+WNALYRERVIFIGQNIDEEFSNQILATM
Sbjct: 59  KASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATM 118

Query: 119 LYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178
           LYLD++DDS+R+YMY+NGPGGD+TP+LAIYDTM+SLKSPVGTHCVG AY+LAGFLLA GE
Sbjct: 119 LYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGE 178

Query: 179 KGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           KG+R AMPLSRIAL SPAGAARGQADDI+NEA EL R+RDY+F EL++ T
Sbjct: 179 KGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNT 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563278|ref|XP_003549891.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic-like [Glycine max]

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 161/217 (74%), Positives = 188/217 (86%)

Query: 12  PSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIG 71
           P+ S   KL+SGLK+Q+ S F   +PN++AEFYG+VH +L+    N  P   RI MMPIG
Sbjct: 18  PTSSVATKLYSGLKLQAASSFRAARPNVTAEFYGKVHNTLHCRYANHNPSMARIRMMPIG 77

Query: 72  TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           TPKV YRTPGEG+WQWVD+WNALYRERVIFIGQ IDEEFSNQILATMLYLDS+D+SK++Y
Sbjct: 78  TPKVPYRTPGEGTWQWVDVWNALYRERVIFIGQEIDEEFSNQILATMLYLDSIDNSKKLY 137

Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           MYINGPGGD+TP++AIYDTMQSL+SPV THCVG+AY LA FLLA GEK NRSAMPLSR+A
Sbjct: 138 MYINGPGGDLTPSMAIYDTMQSLQSPVATHCVGYAYSLAAFLLAAGEKSNRSAMPLSRVA 197

Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           L SPAGAARGQADDI+NEA+ELLR+RDY+F ELS+KT
Sbjct: 198 LTSPAGAARGQADDIQNEANELLRIRDYLFNELSKKT 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391391|ref|NP_563907.1| ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana] gi|75315329|sp|Q9XJ36.1|CLPR2_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic; Short=ClpR2; Short=nClpP2; Flags: Precursor gi|8778627|gb|AAF79635.1|AC025416_9 F5O11.13 [Arabidopsis thaliana] gi|5360589|dbj|BAA82066.1| nClpP2 [Arabidopsis thaliana] gi|17065388|gb|AAL32848.1| similar to nClpP2 [Arabidopsis thaliana] gi|20148625|gb|AAM10203.1| similar to nClpP2 dbj|BAA82066.1 [Arabidopsis thaliana] gi|332190755|gb|AEE28876.1| ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 169/230 (73%), Positives = 196/230 (85%), Gaps = 4/230 (1%)

Query: 1   MSVSLNANLYQPSLS--CNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRND 58
           M+VS N  L+QPSLS  C++KL+SGLK QS S   +G  NL+ EFYGRV+KSL SG    
Sbjct: 1   MAVSFNTTLHQPSLSPSCSIKLYSGLKPQSASFLASGYQNLNKEFYGRVYKSLQSG--TG 58

Query: 59  KPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATM 118
           K  R R+ MMPIGTP+V YR   EG+WQWVD+WNALYRERVIFIGQNIDEEFSNQILATM
Sbjct: 59  KASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATM 118

Query: 119 LYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178
           LYLD++DDS+R+YMY+NGPGGD+TP+LAIYDTM+SLKSPVGTHCVG AY+LAGFLLA GE
Sbjct: 119 LYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGE 178

Query: 179 KGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           KG+R AMPLSRIAL SPAGAARGQADDI+NEA EL R+RDY+F EL++ T
Sbjct: 179 KGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNT 228

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514168|ref|XP_003525778.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic-like [Glycine max]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 160/214 (74%), Positives = 187/214 (87%)

Query: 15  SCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPK 74
           S   KL+SGLK+Q+ S FG  KPN++AEFYG+VH +L+    N      RI MMPIGTPK
Sbjct: 48  SVATKLYSGLKLQAASPFGAAKPNVTAEFYGKVHNTLHCRYANHNTSMARIRMMPIGTPK 107

Query: 75  VLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYI 134
           V YRTPGEG+WQWVD+WNALYRERVIFIGQ IDEEFSNQILATMLYLDS+++SK++YMYI
Sbjct: 108 VPYRTPGEGTWQWVDVWNALYRERVIFIGQEIDEEFSNQILATMLYLDSIENSKKLYMYI 167

Query: 135 NGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDS 194
           NGPGGD+TP++AIYDTMQSL+SPV THCVG+AY LA FLLA GEKGNRSAMPLSR+AL S
Sbjct: 168 NGPGGDLTPSMAIYDTMQSLQSPVATHCVGYAYSLAAFLLAAGEKGNRSAMPLSRVALTS 227

Query: 195 PAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           PAGAARGQADDI+NEA+ELLR+RDY+F EL++KT
Sbjct: 228 PAGAARGQADDIQNEANELLRIRDYLFNELAQKT 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16209712|gb|AAL14412.1| At1g12410/F5O11_7 [Arabidopsis thaliana]

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 168/230 (73%), Positives = 195/230 (84%), Gaps = 4/230 (1%)

Query: 1   MSVSLNANLYQPSLS--CNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRND 58
           M+VS N  L+QPSLS  C++KL+SGLK QS S   +G  NL+ EFYGRV+KSL SG    
Sbjct: 1   MAVSFNTTLHQPSLSPSCSIKLYSGLKPQSASFLASGYQNLNKEFYGRVYKSLQSG--TG 58

Query: 59  KPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATM 118
           K  R R+ MMPIGTP+V YR   EG+WQWVD+WNALYRERVIFIGQNIDEEFSNQILATM
Sbjct: 59  KASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATM 118

Query: 119 LYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178
           LYLD++D S+R+YMY+NGPGGD+TP+LAIYDTM+SLKSPVGTHCVG AY+LAGFLLA GE
Sbjct: 119 LYLDTLDGSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGE 178

Query: 179 KGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           KG+R AMPLSRIAL SPAGAARGQADDI+NEA EL R+RDY+F EL++ T
Sbjct: 179 KGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNT 228

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459668|ref|XP_004147568.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic-like [Cucumis sativus] gi|449523577|ref|XP_004168800.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic-like [Cucumis sativus]

 Score =  345 bits (886), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 159/218 (72%), Positives = 189/218 (86%)

Query: 11  QPSLSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPI 70
           QPSLS   K+++GLK QS S FG  KPN++AEFYG+VHKSL +   N K  R +  MMPI
Sbjct: 17  QPSLSVATKVYTGLKPQSASPFGGAKPNITAEFYGKVHKSLQTRTNNKKAARAQFQMMPI 76

Query: 71  GTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRV 130
           GTP+V Y+TPGEG WQWVDLWNALYRERVIFIG  +DEEFSNQILATMLYLDSV+ SK++
Sbjct: 77  GTPRVPYKTPGEGFWQWVDLWNALYRERVIFIGDYVDEEFSNQILATMLYLDSVEASKKL 136

Query: 131 YMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRI 190
           Y+YINGPGGD+TPTLA+YDTMQSLKSP+ THC+G AY++A FLLA GEKGNRSAMPLSRI
Sbjct: 137 YIYINGPGGDLTPTLALYDTMQSLKSPIATHCMGQAYNMAAFLLAAGEKGNRSAMPLSRI 196

Query: 191 ALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           AL SPAG+ARG+ADDI+NEA++LL++RDY+F ELS+KT
Sbjct: 197 ALQSPAGSARGRADDIQNEANQLLKIRDYLFDELSKKT 234

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477011|ref|XP_003608791.1| ATP-dependent Clp protease proteolytic subunit [Medicago truncatula] gi|355509846|gb|AES90988.1| ATP-dependent Clp protease proteolytic subunit [Medicago truncatula]

 Score =  322 bits (826), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 149/222 (67%), Positives = 185/222 (83%), Gaps = 3/222 (1%)

Query: 9   LYQPSLSCNLKLFSGLKIQSPSVFGTGK--PNLSAEFYGRVHKSLYSGIRNDKPIRGRIA 66
           +Y P  S + K++SGLK+QS   FG      N++A+F+G+V+K L     N KP+R +I 
Sbjct: 70  VYSPP-SVSTKIYSGLKLQSSRTFGASSISSNVNAQFFGKVNKVLNFRYANQKPVRAQIR 128

Query: 67  MMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDD 126
           MMPIGTP+V YRTPGEG+WQWVDLWNALYRERVIFIGQ IDEE SNQILAT+LYLDSVD+
Sbjct: 129 MMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIFIGQEIDEELSNQILATLLYLDSVDN 188

Query: 127 SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP 186
           SK++Y+YINGPGGD+TP +++YDTMQSL++P+ THC+G AY LA FLLA GEKGNR+AMP
Sbjct: 189 SKKLYLYINGPGGDLTPCMSLYDTMQSLQTPICTHCIGQAYGLAAFLLAAGEKGNRTAMP 248

Query: 187 LSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           L+RI + SPAGAARG+ADDI+NEA ELLR+RDY+F EL+ KT
Sbjct: 249 LARIVIQSPAGAARGRADDIQNEAAELLRIRDYLFTELANKT 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2034625	279	CLP2 "CLP protease proteolytic	0.965	0.810	0.734	3.2e-88
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	0.653	0.784	0.439	1.4e-30
UNIPROTKB|P0C312	216	clpP "ATP-dependent Clp protea	0.688	0.745	0.425	2.3e-30
UNIPROTKB|P0C313	216	clpP "ATP-dependent Clp protea	0.688	0.745	0.425	2.3e-30
UNIPROTKB|P0C314	216	clpP "ATP-dependent Clp protea	0.688	0.745	0.425	2.3e-30
UNIPROTKB|Q6ENE9	216	clpP "ATP-dependent Clp protea	0.688	0.745	0.425	2.3e-30
TIGR_CMR|GSU_1792	199	GSU_1792 "ATP-dependent Clp pr	0.658	0.773	0.416	4.4e-29
TIGR_CMR|SO_1794	202	SO_1794 "ATP-dependent Clp pro	0.653	0.757	0.420	1.2e-28
UNIPROTKB|Q16740	277	CLPP "Putative ATP-dependent C	0.876	0.740	0.344	3.9e-28
TIGR_CMR|CPS_3785	220	CPS_3785 "ATP-dependent Clp pr	0.653	0.695	0.401	3.9e-28

TAIR|locus:2034625 CLP2 "CLP protease proteolytic subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 169/230 (73%), Positives = 196/230 (85%)

Query:     1 MSVSLNANLYQPSLS--CNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRND 58
             M+VS N  L+QPSLS  C++KL+SGLK QS S   +G  NL+ EFYGRV+KSL SG    
Sbjct:     1 MAVSFNTTLHQPSLSPSCSIKLYSGLKPQSASFLASGYQNLNKEFYGRVYKSLQSG--TG 58

Query:    59 KPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATM 118
             K  R R+ MMPIGTP+V YR   EG+WQWVD+WNALYRERVIFIGQNIDEEFSNQILATM
Sbjct:    59 KASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATM 118

Query:   119 LYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178
             LYLD++DDS+R+YMY+NGPGGD+TP+LAIYDTM+SLKSPVGTHCVG AY+LAGFLLA GE
Sbjct:   119 LYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGE 178

Query:   179 KGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
             KG+R AMPLSRIAL SPAGAARGQADDI+NEA EL R+RDY+F EL++ T
Sbjct:   179 KGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNT 228

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 69/157 (43%), Positives = 102/157 (64%)

Query:    73 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
             P V+ +T  GE S+   D+W+ L ++R IFIG  ID+  +N ++A ML+L++ D  K ++
Sbjct:     6 PIVIEQTSRGERSY---DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIH 62

Query:   132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
             +YIN PGG +T  +AIYDTMQ +K  V T C+G A  +  FLLA G KG R ++P +RI 
Sbjct:    63 LYINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIM 122

Query:   192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
             +  P G  +GQA DI   A E+LR+RD + + L++ T
Sbjct:   123 IHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHT 159

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P0C312 clpP "ATP-dependent Clp protease proteolytic subunit" [Oryza sativa (taxid:4530)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/162 (42%), Positives = 98/162 (60%)

Query:    68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
             MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D  
Sbjct:     1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGI 60

Query:   128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
               ++++IN PGG +   +AI+DTMQ++   + T C+G A  +A F+L GGE   R A P 
Sbjct:    61 SDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPH 120

Query:   188 SRIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKT 228
             +RI L  PA A  R +  +   E +EL +VR+ I +  + +T
Sbjct:   121 ARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRT 162

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C313 clpP "ATP-dependent Clp protease proteolytic subunit" [Oryza sativa Indica Group (taxid:39946)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/162 (42%), Positives = 98/162 (60%)

Query:    68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
             MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D  
Sbjct:     1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGI 60

Query:   128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
               ++++IN PGG +   +AI+DTMQ++   + T C+G A  +A F+L GGE   R A P 
Sbjct:    61 SDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPH 120

Query:   188 SRIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKT 228
             +RI L  PA A  R +  +   E +EL +VR+ I +  + +T
Sbjct:   121 ARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRT 162

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C314 clpP "ATP-dependent Clp protease proteolytic subunit" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/162 (42%), Positives = 98/162 (60%)

Query:    68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
             MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D  
Sbjct:     1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGI 60

Query:   128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
               ++++IN PGG +   +AI+DTMQ++   + T C+G A  +A F+L GGE   R A P 
Sbjct:    61 SDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPH 120

Query:   188 SRIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKT 228
             +RI L  PA A  R +  +   E +EL +VR+ I +  + +T
Sbjct:   121 ARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRT 162

GO:0009536 "plastid" evidence=IC

UNIPROTKB|Q6ENE9 clpP "ATP-dependent Clp protease proteolytic subunit" [Oryza nivara (taxid:4536)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/162 (42%), Positives = 98/162 (60%)

Query:    68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
             MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D  
Sbjct:     1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGI 60

Query:   128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
               ++++IN PGG +   +AI+DTMQ++   + T C+G A  +A F+L GGE   R A P 
Sbjct:    61 SDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPH 120

Query:   188 SRIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKT 228
             +RI L  PA A  R +  +   E +EL +VR+ I +  + +T
Sbjct:   121 ARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRT 162

GO:0009536 "plastid" evidence=IC

TIGR_CMR|GSU_1792 GSU_1792 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 65/156 (41%), Positives = 102/156 (65%)

Query:    73 PKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYM 132
             P V+ +T G G   + D+++ L ++R+IF+G  +D+  +N ++A ML+L++ D  K +++
Sbjct:     4 PIVVEQT-GRGERSY-DIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHL 61

Query:   133 YINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL 192
             YIN PGG VT  +AIYDTMQ +K+PV T CVG A  +   LL+GGEKG R ++  SRI +
Sbjct:    62 YINSPGGVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMI 121

Query:   193 DSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
               P G  +GQA DI   A E+L+++  + + L+  T
Sbjct:   122 HQPLGGFQGQATDIHIHAQEILKLKKRLNEILAENT 157

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|SO_1794 SO_1794 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 66/157 (42%), Positives = 100/157 (63%)

Query:    73 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
             P V+ +T  GE S+   D+++ L +ER+IF+   ++E  +N I+A +L+L+S    K ++
Sbjct:    13 PMVIEQTAKGERSF---DIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIF 69

Query:   132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
             +YIN PGG VT  +AIYDTMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ 
Sbjct:    70 LYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVM 129

Query:   192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
             +  P G  +GQA DI   A E+L +++ + + L+  T
Sbjct:   130 IHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHT 166

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|Q16740 CLPP "Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 73/212 (34%), Positives = 123/212 (58%)

Query:    20 LFSGLKIQSPSVFGTGKPNLSAEFYGR--VHKSLYSGIRNDKPIRGRIAM-MPIGTPKVL 76
             L  G ++ S      G P L+A F  +    ++L +G+   + +       +P+  P V+
Sbjct:     6 LVGGARVASCRYPALG-PRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPL-IPIVV 63

Query:    77 YRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYING 136
              +T G G   + D+++ L RER++ +   ID+  ++ ++A +L+L S  + K ++MYIN 
Sbjct:    64 EQT-GRGERAY-DIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINS 121

Query:   137 PGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196
             PGG VT  LAIYDTMQ + +P+ T CVG A  +   LLA G  G R ++P SRI +  P+
Sbjct:   122 PGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPS 181

Query:   197 GAARGQADDIRNEADELLRVRDYIFKELSRKT 228
             G ARGQA DI  +A+E+++++  ++   ++ T
Sbjct:   182 GGARGQATDIAIQAEEIMKLKKQLYNIYAKHT 213

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008233 "peptidase activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

TIGR_CMR|CPS_3785 CPS_3785 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 63/157 (40%), Positives = 99/157 (63%)

Query:    73 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
             P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A +L+L+S    K +Y
Sbjct:    29 PMVVEQTAKGERSY---DIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESESPDKDIY 85

Query:   132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
             +YIN PGG VT  +AIYDTM+ +K  + T C+G A  +  FLL+GGEKG R  +P +R+ 
Sbjct:    86 LYINSPGGSVTAGMAIYDTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCLPNARVM 145

Query:   192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
             +  P G  +GQA D    A E+L ++D + K ++  T
Sbjct:   146 IHQPLGGFQGQASDFEIHAKEILFIKDKLNKLMAEHT 182

GO:0009368 "endopeptidase Clp complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XJ36	CLPR2_ARATH	No assigned EC number	0.7347	0.9658	0.8100	yes	no
Q8YP43	CLPP3_NOSS1	3, ., 4, ., 2, 1, ., 9, 2	0.5733	0.6410	0.7614	yes	no
Q3MDK7	CLPP2_ANAVT	3, ., 4, ., 2, 1, ., 9, 2	0.5733	0.6410	0.7614	yes	no
Q8DJZ9	CLPP2_THEEB	3, ., 4, ., 2, 1, ., 9, 2	0.5933	0.6410	0.7575	yes	no
Q7NEW2	CLPP1_GLOVI	3, ., 4, ., 2, 1, ., 9, 2	0.5031	0.6837	0.8121	yes	no
Q7U5Q2	CLPP3_SYNPX	3, ., 4, ., 2, 1, ., 9, 2	0.5094	0.6752	0.79	yes	no
Q3ALC4	CLPP3_SYNSC	3, ., 4, ., 2, 1, ., 9, 2	0.5094	0.6752	0.79	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.766
3rd Layer	3.4.21.92	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_1270005	hypothetical protein (279 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XV.374.1	hypothetical protein (403 aa)	•		•				•		0.579
	gw1.XII.172.1	hypothetical protein (427 aa)	•		•				•		0.559
	gw1.86.193.1	hypothetical protein (521 aa)	•		•				•		0.424

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	4e-68
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	1e-64
pfam00574	182	pfam00574, CLP_protease, Clp protease	1e-63
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	2e-51
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	5e-45
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	7e-45
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	9e-44
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	3e-39
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	3e-37
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	3e-37
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	1e-31
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	5e-29
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	3e-18
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	1e-12
cd07016	160	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP)	1e-11

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score =  207 bits (530), Expect = 4e-68
 Identities = 78/154 (50%), Positives = 106/154 (68%), Gaps = 1/154 (0%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           MPIG PKV +R PGE    WVDL+N LYRER++F+GQ +D+E +NQ++  M+YL   DD+
Sbjct: 1   MPIGVPKVPFRLPGEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDT 60

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           K +Y++IN PGG V   LAIYDTMQ +K  V T C+G A  +A F+LAGGE   R A P 
Sbjct: 61  KDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPH 120

Query: 188 SRIALDSPAGAA-RGQADDIRNEADELLRVRDYI 220
           +R+ +  PA +   GQA +   EA+ELL++R+ I
Sbjct: 121 ARVMIHQPASSFYEGQASEFVLEAEELLKLRETI 154

Length = 200

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  198 bits (505), Expect = 1e-64
 Identities = 70/140 (50%), Positives = 95/140 (67%)

Query: 89  DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIY 148
           D+++ L +ER+IF+G  ID+E +N I+A +LYL+S D  K +Y+YIN PGG VT  LAIY
Sbjct: 1   DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIY 60

Query: 149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN 208
           DTMQ +K PV T C+G A  +   LLA G KG R A+P SRI +  P G A GQA DI  
Sbjct: 61  DTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEI 120

Query: 209 EADELLRVRDYIFKELSRKT 228
           +A E+LR+R  + + L++ T
Sbjct: 121 QAKEILRLRRRLNEILAKHT 140

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score =  195 bits (499), Expect = 1e-63
 Identities = 66/147 (44%), Positives = 100/147 (68%)

Query: 82  EGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV 141
            G  +W D+++ L +ER+IF+G  ID+E +N I+A +L+L++ D  K +Y+YIN PGG V
Sbjct: 1   SGGERWYDIYSRLLKERIIFLGGEIDDEVANLIIAQLLFLEAEDPDKDIYLYINSPGGSV 60

Query: 142 TPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARG 201
           T  LAIYDTMQ +K  V T C+G A  +  F+LA G KG R A+P +RI +  P+G A+G
Sbjct: 61  TAGLAIYDTMQFIKPDVSTICLGLAASMGSFILAAGTKGKRFALPNARIMIHQPSGGAQG 120

Query: 202 QADDIRNEADELLRVRDYIFKELSRKT 228
           QA DI  +A+E+L++R+ + +  +  T
Sbjct: 121 QASDIEIQAEEILKIRERLNEIYAEHT 147

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  165 bits (420), Expect = 2e-51
 Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 7/165 (4%)

Query: 68  MPIGTPKVLYR----TPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDS 123
           MPI    V       + GE   +  D+++ L +ER+IF+G  +++  +N I+A +L+L++
Sbjct: 1   MPIMMNLVPMVIEQTSRGE---RSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEA 57

Query: 124 VDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRS 183
            D  K +Y+YIN PGG VT  LAIYDTMQ +K  V T C+G A  +  FLLA G KG R 
Sbjct: 58  EDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRF 117

Query: 184 AMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           A+P SRI +  P G  +GQA DI   A E+L+++  + + L+  T
Sbjct: 118 ALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHT 162

Length = 200

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  148 bits (377), Expect = 5e-45
 Identities = 61/142 (42%), Positives = 94/142 (66%)

Query: 87  WVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA 146
             D+++ L +ER+IF+G  I++  +N I+A +L+L++ D  K +Y+YIN PGG VT  LA
Sbjct: 17  SYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA 76

Query: 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDI 206
           IYDTMQ +K PV T C+G A  +   LL  G+KG R A+P +RI +  P+G A+GQA DI
Sbjct: 77  IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDI 136

Query: 207 RNEADELLRVRDYIFKELSRKT 228
              A E+L++++ + +  +  T
Sbjct: 137 EIHAREILKIKERLNRIYAEHT 158

Length = 200

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score =  148 bits (375), Expect = 7e-45
 Identities = 61/140 (43%), Positives = 93/140 (66%)

Query: 89  DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIY 148
           D+++ L +ER+IF+   +++  +N I+A +L+L++ D  K +Y+YIN PGG +T  LAIY
Sbjct: 19  DIYSRLLKERIIFLSGEVNDNVANSIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIY 78

Query: 149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN 208
           DTMQ +K  V T C+G A  +  FLLA G KG R ++P SRI +  P G A+GQA DI  
Sbjct: 79  DTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQATDIEI 138

Query: 209 EADELLRVRDYIFKELSRKT 228
           +A+E+LR++  +   L+  T
Sbjct: 139 QANEILRLKGLLNDILAEHT 158

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  145 bits (368), Expect = 9e-44
 Identities = 65/140 (46%), Positives = 95/140 (67%)

Query: 89  DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIY 148
           D+++ L RER+IF+G+ +  + +N+I+A +L+L++ D  K +Y+YIN PGG V   L I+
Sbjct: 17  DIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIF 76

Query: 149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN 208
           DTMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G ARGQA DIR 
Sbjct: 77  DTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRI 136

Query: 209 EADELLRVRDYIFKELSRKT 228
           +ADE+L +++ +  ELS +T
Sbjct: 137 QADEILFLKERLNTELSERT 156

Length = 196

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  134 bits (339), Expect = 3e-39
 Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 6/159 (3%)

Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P  + RT  G       D +N L+ ER+IF+G  +D+  +N ++A +L L+S+D  + + 
Sbjct: 13  PSFIERTSYGVKES---DPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDIT 69

Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG VT   AIYDT+Q ++  V T C G A      LLA G  G R A+P +RI 
Sbjct: 70  LYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARIL 129

Query: 192 LDSPA--GAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P+  G  RGQA D+  +A E+LR+R+ + + L+  T
Sbjct: 130 IHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHT 168

Length = 207

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  129 bits (326), Expect = 3e-37
 Identities = 61/138 (44%), Positives = 87/138 (63%)

Query: 88  VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI 147
           +D+++ L  +R+IF+G  ID+  +N I A +LYLDSVD  K + +YIN PGG V   L I
Sbjct: 45  MDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGI 104

Query: 148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIR 207
           YDTMQ + S V T C G A  +A  LL  G KG RSA+P SR+ +  P G A+GQA DI 
Sbjct: 105 YDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIE 164

Query: 208 NEADELLRVRDYIFKELS 225
             A E+ +++  ++  ++
Sbjct: 165 ITAREIQKLKKELYTIIA 182

Length = 221

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  128 bits (324), Expect = 3e-37
 Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 3/164 (1%)

Query: 68  MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDS 127
           M +  P V+ +T G G   + D+++ L ++R+IF+G  I+ + +N I+A +L LDS +  
Sbjct: 1   MSV-IPYVIEQT-GRGERMY-DIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPE 57

Query: 128 KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 187
           + + MYIN PGG+V   LAIYDTM+ +K+PV T CVG A  +   LL  G+KG R A+P 
Sbjct: 58  QEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPN 117

Query: 188 SRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYE 231
           SRI +   +   RG   D+  +A E+L +RD +     R TD  
Sbjct: 118 SRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLP 161

Length = 201

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  113 bits (283), Expect = 1e-31
 Identities = 46/131 (35%), Positives = 72/131 (54%)

Query: 98  RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSP 157
           R I +   +++  +NQ  A +L+L +V+  K +Y+YIN PGGDV   +AIYDT++ +K+ 
Sbjct: 1   REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKAD 60

Query: 158 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVR 217
           V T   G A  +   +   G KG R  +P + + +  P G   G A D+R  AD LL+V 
Sbjct: 61  VVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVE 120

Query: 218 DYIFKELSRKT 228
             +    + KT
Sbjct: 121 GNLVSAYAHKT 131

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score =  108 bits (271), Expect = 5e-29
 Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 25/171 (14%)

Query: 77  YRTPGEGSWQWVDLWNALYRERVIFIG----------QNIDEEFSNQILATMLYLDSVDD 126
            RTP        DL + L +ER++++G          + +  + +  I+A +LYL+  D 
Sbjct: 16  MRTPPP------DLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDP 69

Query: 127 SKRVYMYINGPG-----GDV----TPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG 177
            K +Y YIN  G     GD     T   AI DTM+ +K PV T C+G A   A  +L+ G
Sbjct: 70  EKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAG 129

Query: 178 EKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
            KG R+++P + I L  P   ARGQA DI+  A E+L  +  + + LSR T
Sbjct: 130 TKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNT 180

Length = 222

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 79.5 bits (196), Expect = 3e-18
 Identities = 37/131 (28%), Positives = 69/131 (52%)

Query: 98  RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSP 157
           R I I   I+++ S      +L L+++D  K +++YI+  GGD+    AI++ ++ +K  
Sbjct: 24  RSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPK 83

Query: 158 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVR 217
           V T  VG     A  +    +K +R ++P +R  L  P    +G A DI   A+EL +V+
Sbjct: 84  VFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVK 143

Query: 218 DYIFKELSRKT 228
             +   ++++T
Sbjct: 144 SELNDIIAKET 154

Length = 197

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 99  VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPV 158
           VIFI   I++  ++Q+ A + + ++ +  K + + +N PGG V   + I D +Q+ + PV
Sbjct: 1   VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPV 60

Query: 159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADEL 213
             +  G A     ++     K      P +R+    P G   G  +    EAD+ 
Sbjct: 61  IAYVGGQAASAGYYIATAANK--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQR 113

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

>gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 60.6 bits (148), Expect = 1e-11
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 121 LDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKG 180
           LD++ D   + + IN PGGDV   LAIY+ ++  K  V     G A   A  +   G++ 
Sbjct: 24  LDALGDDSDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGDE- 82

Query: 181 NRSAMPL-SRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
               MP  + + + +P+  A G ADD+R  AD L ++ + I    + KT
Sbjct: 83  --VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKT 129

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	100.0
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	100.0
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	100.0
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	100.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	100.0
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	100.0
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	100.0
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	100.0
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	100.0
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.95
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.9
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.89
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.83
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.73
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.38
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.3
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	99.26
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.25
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.22
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.19
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.05
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.83
PRK11778	330	putative inner membrane peptidase; Provisional	98.75
PRK10949	618	protease 4; Provisional	98.73
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.66
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	98.35
COG3904	245	Predicted periplasmic protein [Function unknown]	98.04
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.13
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	97.02
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	96.75
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	96.74
PRK10949	618	protease 4; Provisional	96.73
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	96.58
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	96.52
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	96.35
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	96.22
PRK06688	259	enoyl-CoA hydratase; Provisional	96.11
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.03
PRK07511	260	enoyl-CoA hydratase; Provisional	95.91
PRK08258	277	enoyl-CoA hydratase; Provisional	95.77
PRK06072	248	enoyl-CoA hydratase; Provisional	95.71
PRK05869	222	enoyl-CoA hydratase; Validated	95.67
PRK06210	272	enoyl-CoA hydratase; Provisional	95.51
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	95.49
PRK07854	243	enoyl-CoA hydratase; Provisional	95.43
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	95.41
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	95.4
PRK06495	257	enoyl-CoA hydratase; Provisional	95.39
PRK06023	251	enoyl-CoA hydratase; Provisional	95.33
PRK06143	256	enoyl-CoA hydratase; Provisional	95.32
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	95.29
PRK05981	266	enoyl-CoA hydratase; Provisional	95.28
PRK07468	262	enoyl-CoA hydratase; Provisional	95.26
PRK06190	258	enoyl-CoA hydratase; Provisional	95.25
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	95.24
PRK07509	262	enoyl-CoA hydratase; Provisional	95.22
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	95.1
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	95.1
PLN02600	251	enoyl-CoA hydratase	95.1
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	95.09
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	95.06
PRK08138	261	enoyl-CoA hydratase; Provisional	95.02
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	95.02
PRK05864	276	enoyl-CoA hydratase; Provisional	95.02
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	95.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	94.89
PRK08260	296	enoyl-CoA hydratase; Provisional	94.88
PRK09076	258	enoyl-CoA hydratase; Provisional	94.77
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	94.76
PRK08150	255	enoyl-CoA hydratase; Provisional	94.73
PRK05870	249	enoyl-CoA hydratase; Provisional	94.69
PLN02921	327	naphthoate synthase	94.64
PRK07260	255	enoyl-CoA hydratase; Provisional	94.63
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	94.61
PRK07327	268	enoyl-CoA hydratase; Provisional	94.54
PRK06142	272	enoyl-CoA hydratase; Provisional	94.54
PRK05980	260	enoyl-CoA hydratase; Provisional	94.52
PRK07657	260	enoyl-CoA hydratase; Provisional	94.48
PRK08140	262	enoyl-CoA hydratase; Provisional	94.4
PLN02888	265	enoyl-CoA hydratase	94.38
PRK07938	249	enoyl-CoA hydratase; Provisional	94.37
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	94.36
PRK07658	257	enoyl-CoA hydratase; Provisional	94.34
PRK08321	302	naphthoate synthase; Validated	94.33
PRK08290	288	enoyl-CoA hydratase; Provisional	94.21
PRK09245	266	enoyl-CoA hydratase; Provisional	94.2
PRK05995	262	enoyl-CoA hydratase; Provisional	94.18
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	94.12
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	94.09
PRK06144	262	enoyl-CoA hydratase; Provisional	93.93
PRK08272	302	enoyl-CoA hydratase; Provisional	93.9
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	93.9
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	93.87
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	93.81
PRK12478	298	enoyl-CoA hydratase; Provisional	93.79
PRK06127	269	enoyl-CoA hydratase; Provisional	93.75
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	93.66
PRK06494	259	enoyl-CoA hydratase; Provisional	93.66
PRK05862	257	enoyl-CoA hydratase; Provisional	93.59
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	93.48
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	93.45
PRK07827	260	enoyl-CoA hydratase; Provisional	93.39
PRK08788	287	enoyl-CoA hydratase; Validated	93.19
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	93.09
PRK06213	229	enoyl-CoA hydratase; Provisional	93.07
PRK06563	255	enoyl-CoA hydratase; Provisional	92.9
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	92.89
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	92.83
PRK08139	266	enoyl-CoA hydratase; Validated	92.78
PRK07659	260	enoyl-CoA hydratase; Provisional	92.72
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	92.34
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	92.23
PRK08259	254	enoyl-CoA hydratase; Provisional	91.59
PRK07799	263	enoyl-CoA hydratase; Provisional	91.13
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	91.02
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	90.95
PRK08252	254	enoyl-CoA hydratase; Provisional	90.9
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.26
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.07
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	89.55
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	89.33
PRK11730	715	fadB multifunctional fatty acid oxidation complex	89.28
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	88.65
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	87.6
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	87.22
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	83.66
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	82.48
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	81.64

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-64  Score=444.85  Aligned_cols=222  Identities=43%  Similarity=0.650  Sum_probs=203.6

Q ss_pred             cCCC--ccccceeeccccccCCCcccCCCCCchhhHHhhhhheeeecccCCCCccceeeeccCCCCcceeecCCCCCCch
Q 026750           10 YQPS--LSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQW   87 (234)
Q Consensus        10 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mp~g~P~v~~~~~g~~~~~w   87 (234)
                      .+|+  .+|+.+.|+||+|++.+.|. ..-++...+...+-.+++++..  .+++....++++++|.+++..++++.++|
T Consensus         6 ~~~~~s~~~~~~~~~~l~P~~~~~~~-~~~~~~r~~~~~~~~s~~sg~~--~~~~~~~~~~~~~~p~~~~~~~~rG~~~~   82 (275)
T KOG0840|consen    6 ASPSLSSSSSPKRFSGLNPASTSNFP-KQRNVRRQLKSSTPKSLRSGGS--SNSRGWSLRAPILVPRFPIESPGRGRERP   82 (275)
T ss_pred             cccccCcccccchhcccCchhhhhcc-ccccchhhhhccCcccccccCC--CCCCcccccccccCCcceeeccccCCCCc
Confidence            3453  36899999999999999988 5556666666666656655555  45557777899999999999999888899


Q ss_pred             hchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccc
Q 026750           88 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY  167 (234)
Q Consensus        88 ~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~Aa  167 (234)
                      +|||++|||+|||||+++|||++++.|++||+||+.+|++|+|+||||||||++++|+||||+|+++++||.|+|+|+||
T Consensus        83 ~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~G~Aa  162 (275)
T KOG0840|consen   83 YDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGLAA  162 (275)
T ss_pred             ccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeehhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          168 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       168 S~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      |||+|||+||+||+|+++||+|+|||||.++++|++.|+.++|+|+.++|+++.++|+++||||.|+
T Consensus       163 s~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~  229 (275)
T KOG0840|consen  163 SMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV  229 (275)
T ss_pred             hHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999874

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=100.00  E-value=5.6e-55  Score=377.97  Aligned_cols=167  Identities=47%  Similarity=0.838  Sum_probs=163.6

Q ss_pred             ccCCCCcceeecCCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHH
Q 026750           68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI  147 (234)
Q Consensus        68 mp~g~P~v~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaI  147 (234)
                      ||+|+|+|++..++++.++|+|+|++||++|||||+++||++++++++++|+||+.+++.++|+||||||||+|++|++|
T Consensus         1 m~~~~p~~~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aI   80 (200)
T CHL00028          1 MPIGVPKVPFRLPGEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAI   80 (200)
T ss_pred             CCCCCceeeeecCCCCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc-cccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026750          148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSR  226 (234)
Q Consensus       148 yD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~-~~G~a~di~~~a~el~~lr~~i~~iya~  226 (234)
                      ||+|++++.+|+|+|.|+|||||++||++|+||+|+++|||++|||||+++ ..|+++|+++++++|+++++.+.++|++
T Consensus        81 yd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~  160 (200)
T CHL00028         81 YDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQ  160 (200)
T ss_pred             HHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998 8999999999999999999999999999


Q ss_pred             hhCCCCCC
Q 026750          227 KTDYEGFK  234 (234)
Q Consensus       227 ~TG~~~ek  234 (234)
                      +||++.|+
T Consensus       161 ~Tg~~~e~  168 (200)
T CHL00028        161 RTGKPLWV  168 (200)
T ss_pred             HHCcCHHH
Confidence            99999764

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=100.00  E-value=1.1e-54  Score=381.34  Aligned_cols=167  Identities=35%  Similarity=0.528  Sum_probs=162.7

Q ss_pred             ccCCCCcceeecCCCCCCchhchHhhhcCCcEEEECcccChh----------hHHHHHHHHhcccccCCCCceEEEEeCC
Q 026750           68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEE----------FSNQILATMLYLDSVDDSKRVYMYINGP  137 (234)
Q Consensus        68 mp~g~P~v~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e----------~a~~iia~Ll~L~~~~~~k~I~L~INSP  137 (234)
                      ||+|+|+||+..+++..+.|.|++++||++|||||+++|+++          ++++|++||+||+.+++.++|+||||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSp   80 (222)
T PRK12552          1 SPIMAVQAPYYGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINST   80 (222)
T ss_pred             CCCCcccccccCCCCCCCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCC
Confidence            799999999999998889999999999999999999999999          9999999999999999999999999999


Q ss_pred             CCC---------ccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHH
Q 026750          138 GGD---------VTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN  208 (234)
Q Consensus       138 GG~---------v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~  208 (234)
                      ||+         +++|++|||+|++++++|+|+|+|+|||||++||+||+||+|+++|||++|||||+++.+|+++|+++
T Consensus        81 GGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~  160 (222)
T PRK12552         81 GTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQI  160 (222)
T ss_pred             CCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHH
Confidence            988         77889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          209 EADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       209 ~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      +++||+++++.+.++|+++|||+.|+
T Consensus       161 ~a~el~~~r~~l~~iya~~TG~~~e~  186 (222)
T PRK12552        161 RAKEVLHNKRTMLEILSRNTGQTVEK  186 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999874

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=2.2e-53  Score=367.31  Aligned_cols=150  Identities=41%  Similarity=0.724  Sum_probs=146.9

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ..++|+|++|+++|+|||+|+|+++.++.+++||++|+++++.++|+||||||||+|++|++|||+||++++||+|+|+|
T Consensus        15 ~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G   94 (200)
T COG0740          15 ERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMG   94 (200)
T ss_pred             CChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEec
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      +|||||++|++||+||||+++||||+|||||+++++|+++|++++|+|++++++.+.++|+++|||+.||
T Consensus        95 ~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~  164 (200)
T COG0740          95 QAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEK  164 (200)
T ss_pred             HHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999875

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=4.9e-52  Score=360.05  Aligned_cols=150  Identities=40%  Similarity=0.684  Sum_probs=146.7

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ..|.|+|++||++|||||+++|+++++++|+++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|+|
T Consensus        15 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G   94 (201)
T PRK14513         15 ERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVG   94 (201)
T ss_pred             ccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEe
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      +|||||++|++||+||||+++|||++|||||+++++|++.|++++++||+++++.+.++|+++||++.|+
T Consensus        95 ~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~  164 (201)
T PRK14513         95 IAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEK  164 (201)
T ss_pred             eehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999764

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=5.7e-51  Score=357.79  Aligned_cols=150  Identities=41%  Similarity=0.672  Sum_probs=146.8

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      +.|+|+|++||++|||||+++||+++++++++||++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|.|
T Consensus        42 ~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G  121 (221)
T PRK14514         42 VTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTG  121 (221)
T ss_pred             CcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      +|||||++|+++|++|||+++|||++|||||+++..|+++|++++++|++++++.+.++|+++||++.|+
T Consensus       122 ~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~  191 (221)
T PRK14514        122 MAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDK  191 (221)
T ss_pred             EehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999764

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=1.1e-49  Score=344.11  Aligned_cols=150  Identities=43%  Similarity=0.734  Sum_probs=146.5

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      +.|.|+|++||++|||||+++||++++++++++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|+|
T Consensus        13 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G   92 (196)
T PRK12551         13 ERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVG   92 (196)
T ss_pred             ccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      +|||||++|+++|++|+|+++|||++|||||+++..|+++|+++++++|+++++.+.++|+++||++.|+
T Consensus        93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~  162 (196)
T PRK12551         93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLER  162 (196)
T ss_pred             EehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999763

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=3.1e-47  Score=328.71  Aligned_cols=167  Identities=40%  Similarity=0.645  Sum_probs=160.6

Q ss_pred             ccCCCCcceeec-CCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHH
Q 026750           68 MPIGTPKVLYRT-PGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA  146 (234)
Q Consensus        68 mp~g~P~v~~~~-~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~agla  146 (234)
                      ||+|+|.||+.. ++++.+.|+|++++||++|+|||+|+|+++++++++++|++|+.+++.++|+||||||||++++|++
T Consensus         1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~   80 (200)
T PRK00277          1 MPIMMNLVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA   80 (200)
T ss_pred             CCCCCCCCceeeccCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHH
Confidence            899999999866 5566788999999999999999999999999999999999999999899999999999999999999


Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR  226 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~  226 (234)
                      |||+|++++.+|+|+|.|.|+|+|++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.++|++
T Consensus        81 I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~  160 (200)
T PRK00277         81 IYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAE  160 (200)
T ss_pred             HHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCC
Q 026750          227 KTDYEGFK  234 (234)
Q Consensus       227 ~TG~~~ek  234 (234)
                      +||++.|+
T Consensus       161 ~tg~~~~~  168 (200)
T PRK00277        161 HTGQPLEK  168 (200)
T ss_pred             HHCcCHHH
Confidence            99998763

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=100.00  E-value=1.3e-45  Score=316.75  Aligned_cols=150  Identities=40%  Similarity=0.707  Sum_probs=146.0

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      +.|+|++++||++|+|||+|+|+++.+++++++|++|+.+++.++|+||||||||++++|++|||+|++++++|+|+|.|
T Consensus        14 ~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G   93 (191)
T TIGR00493        14 ERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIG   93 (191)
T ss_pred             cccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      +|+|||++|+++|++++|+++|||++|||||+++..|++.|+++++++++++++.+.++|+++||+|.++
T Consensus        94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~  163 (191)
T TIGR00493        94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQ  163 (191)
T ss_pred             eeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            9999999999999999999999999999999998999999999999999999999999999999999763

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=4.5e-43  Score=302.77  Aligned_cols=147  Identities=27%  Similarity=0.434  Sum_probs=142.7

Q ss_pred             hchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccc
Q 026750           88 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY  167 (234)
Q Consensus        88 ~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~Aa  167 (234)
                      .+++++|+++|+|||+|+|+++++++|+++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+|+
T Consensus        14 ~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~Aa   93 (197)
T PRK14512         14 DKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVA   93 (197)
T ss_pred             chHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeH
Confidence            47889999999999999999999999999999999888889999999999999999999999999999999999999999


Q ss_pred             cHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          168 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       168 S~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      |||++|+++|++|+|+++|||++|||||+++..|++.|+++++++++++++.+.++|+++||++.++
T Consensus        94 SaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~  160 (197)
T PRK14512         94 SAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDK  160 (197)
T ss_pred             hHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998763

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=3e-42  Score=299.20  Aligned_cols=149  Identities=39%  Similarity=0.650  Sum_probs=144.6

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ..|.|++++|+++|+|||+|+|+++++++++++|++++.+++.++|+||||||||++++|++|||+|++++.+|+|+|.|
T Consensus        23 ~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G  102 (207)
T PRK12553         23 VKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTG  102 (207)
T ss_pred             CccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            55789999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCC--CccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA--GAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~--~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      .|+|||++|+++|++|+|++.|||++|||||+  ++..|++.|+++++++++++++.+.++|+++||++.+
T Consensus       103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e  173 (207)
T PRK12553        103 QAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVE  173 (207)
T ss_pred             ehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999998  6689999999999999999999999999999999875

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=2.6e-42  Score=290.76  Aligned_cols=149  Identities=37%  Similarity=0.667  Sum_probs=141.6

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ..|+|||++|+++|+|||+|+||++++++++++|++|+.+++.++|+|+||||||++.+|++|||+|+.++.+|+|+|.|
T Consensus         4 ~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G   83 (182)
T PF00574_consen    4 EEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLG   83 (182)
T ss_dssp             EEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred             cEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeC
Confidence            47999999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      .|+|+|++|+++|++++|++.|+|+||+|||+.+..|++.|+++++++++++++.+.++|+++||++.+
T Consensus        84 ~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~  152 (182)
T PF00574_consen   84 LAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKE  152 (182)
T ss_dssp             EEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH
T ss_pred             ccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999865

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=4.8e-40  Score=276.55  Aligned_cols=145  Identities=48%  Similarity=0.797  Sum_probs=141.7

Q ss_pred             chHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcccccc
Q 026750           89 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYH  168 (234)
Q Consensus        89 Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS  168 (234)
                      |++++|+++|+|||+|+|+++.+++++++|++++.+++.++|+||||||||++.+|++|||.|+.++.+|+|++.|+|+|
T Consensus         1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS   80 (171)
T cd07017           1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS   80 (171)
T ss_pred             ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence            68999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          169 LAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       169 ~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      +|++|+++|++|+|++.|||++|||+|+++..|+++|+++++++++++++.+.++|+++||++.+
T Consensus        81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~  145 (171)
T cd07017          81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLE  145 (171)
T ss_pred             HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999865

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=3.4e-38  Score=263.90  Aligned_cols=137  Identities=34%  Similarity=0.547  Sum_probs=133.9

Q ss_pred             cEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCC
Q 026750           98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG  177 (234)
Q Consensus        98 RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG  177 (234)
                      |+|||+|+|+++++++++++|++|+.+++.++|.||||||||+++++++|||+|+.++.+|+|++.|+|+|+|++|+++|
T Consensus         1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~   80 (162)
T cd07013           1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG   80 (162)
T ss_pred             CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence            79999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          178 EKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       178 ~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      ++|+|+++||+++|||||+++..|++.|+++++++++++++.+.++|+++||++.|+
T Consensus        81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~  137 (162)
T cd07013          81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEE  137 (162)
T ss_pred             CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence            999999999999999999999999999999999999999999999999999999764

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.95  E-value=3.3e-27  Score=195.15  Aligned_cols=129  Identities=27%  Similarity=0.399  Sum_probs=123.0

Q ss_pred             EEEECcccCh---hhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHc
Q 026750           99 VIFIGQNIDE---EFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLA  175 (234)
Q Consensus        99 iIfL~g~Id~---e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIla  175 (234)
                      -|||+|+|++   ..++++.+.|.+++.+   ++|.|+||||||++.++++|+|.|+.++.||.|++.|.|+|+|++|++
T Consensus         2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~   78 (160)
T cd07016           2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM   78 (160)
T ss_pred             EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence            4899999999   7999999999988654   799999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026750          176 GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEG  232 (234)
Q Consensus       176 aG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~  232 (234)
                      +|+  +|++.|+++||+|+|.++..|+..++++..++++++++.+.+.|++++|++.
T Consensus        79 a~d--~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~  133 (160)
T cd07016          79 AGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSE  133 (160)
T ss_pred             cCC--eEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            999  4999999999999999999999999999999999999999999999999874

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.90  E-value=5.5e-23  Score=174.69  Aligned_cols=126  Identities=16%  Similarity=0.153  Sum_probs=112.3

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEc---cccccHHHHHHc
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLLA  175 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~---G~AaS~aslIla  175 (234)
                      +|-|.|.|++.....+...|.... +++.+.|.|+||||||++.++++|||+|+..+.||.|+|.   |.|+|+|++|++
T Consensus         3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~   81 (172)
T cd07015           3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL   81 (172)
T ss_pred             EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence            577899999988887777776554 4568899999999999999999999999999999999999   999999999999


Q ss_pred             CCCCCCEEeccCceEeeeCCCCccccC-----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          176 GGEKGNRSAMPLSRIALDSPAGAARGQ-----ADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       176 aG~kgkR~a~PnAriMIHqP~~~~~G~-----a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      +|++  |++.|+++++.|+|..+ .|+     +.|.+++.+++.++|+     ++++||++.+
T Consensus        82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~  136 (172)
T cd07015          82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNAT  136 (172)
T ss_pred             hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHH
Confidence            9996  99999999999999765 366     6788999999988888     9999999865

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.89  E-value=9.2e-23  Score=167.86  Aligned_cols=133  Identities=20%  Similarity=0.301  Sum_probs=124.4

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCC
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE  178 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~  178 (234)
                      +|+|+|+|++.+..++++.|..++.+++.+.|.|++|||||++.++..|++.|+.++.||.+++.|.|+|+|.+|+++|+
T Consensus         1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d   80 (161)
T cd00394           1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN   80 (161)
T ss_pred             CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence            58999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeccCceEeeeCCCCccccCH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          179 KGNRSAMPLSRIALDSPAGAARGQA--DDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       179 kgkR~a~PnAriMIHqP~~~~~G~a--~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                        +|++.|++++++|+|..+..+..  .+.+...+.+..+.+.+.+.+++++|.+.+
T Consensus        81 --~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~  135 (161)
T cd00394          81 --KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTE  135 (161)
T ss_pred             --EEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence              59999999999999987765544  788888899999999999999999998865

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.83  E-value=5.6e-20  Score=156.60  Aligned_cols=130  Identities=15%  Similarity=0.169  Sum_probs=113.2

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEc---cccccHHHHHHc
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLLA  175 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~---G~AaS~aslIla  175 (234)
                      +|.|.|+|++..++.+..+|..++.+ +.+.|.|+||||||++.++..||+.|+.++.||.+.+.   |.|+|+|++|++
T Consensus         3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial   81 (187)
T cd07020           3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL   81 (187)
T ss_pred             EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence            57899999999999999999998854 47899999999999999999999999999999999998   999999999999


Q ss_pred             CCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026750          176 GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEG  232 (234)
Q Consensus       176 aG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~  232 (234)
                      +||+  |++.|+|+|++|+|..+..+...+...+.+.+..++. ..+.|++++|++.
T Consensus        82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~  135 (187)
T cd07020          82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNA  135 (187)
T ss_pred             hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCH
Confidence            9995  9999999999999985544443455666677777765 5788899999863

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.73  E-value=3.8e-17  Score=139.30  Aligned_cols=127  Identities=17%  Similarity=0.175  Sum_probs=104.0

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCC
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE  178 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~  178 (234)
                      +|.+.|.|++..+..+...|.....+ +.+.|.|+||||||.+.++..|++.|+..+.||.+++.|.|+|+|++|+++|+
T Consensus         3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d   81 (178)
T cd07021           3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD   81 (178)
T ss_pred             EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence            57799999998888777777666544 47899999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          179 KGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       179 kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      +  +++.|+++++.|+|.....+++.+     +-+......+.+-|++++|++.+
T Consensus        82 ~--i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~  129 (178)
T cd07021          82 E--IYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPD  129 (178)
T ss_pred             e--EEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHH
Confidence            5  999999999999998655443322     12333333445559999998753

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.38  E-value=4.3e-12  Score=109.31  Aligned_cols=133  Identities=20%  Similarity=0.215  Sum_probs=108.5

Q ss_pred             EEEECcccC---hhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhc---CCCeEEEEccccccHHHH
Q 026750           99 VIFIGQNID---EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAGF  172 (234)
Q Consensus        99 iIfL~g~Id---~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~---~~~V~Tv~~G~AaS~asl  172 (234)
                      +|++.|+|+   +....++..+|..+..+++.+.|.|++|||||++..+..|++.|+.+   +.||.+++.|.|+|+|..
T Consensus         4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~   83 (208)
T cd07023           4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY   83 (208)
T ss_pred             EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence            688999999   78899999999999887789999999999999999999999988765   469999999999999999


Q ss_pred             HHcCCCCCCEEeccCceE------eee------------CCCCcccc------------CHHHHHHHHHHHHHHHHHHHH
Q 026750          173 LLAGGEKGNRSAMPLSRI------ALD------------SPAGAARG------------QADDIRNEADELLRVRDYIFK  222 (234)
Q Consensus       173 IlaaG~kgkR~a~PnAri------MIH------------qP~~~~~G------------~a~di~~~a~el~~lr~~i~~  222 (234)
                      |+++|++  |++.|++.+      |.|            ++..-..|            ..++.+..-+.|+.+.+.+.+
T Consensus        84 lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~  161 (208)
T cd07023          84 IAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD  161 (208)
T ss_pred             HHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999995  999999988      444            22111111            223555566677788889999


Q ss_pred             HHHHhhCCCCC
Q 026750          223 ELSRKTDYEGF  233 (234)
Q Consensus       223 iya~~TG~~~e  233 (234)
                      .+++..|++.+
T Consensus       162 ~Va~~R~~~~~  172 (208)
T cd07023         162 VVAEGRGMSGE  172 (208)
T ss_pred             HHHhcCCCCHH
Confidence            99988887643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.30  E-value=3.6e-11  Score=103.95  Aligned_cols=131  Identities=15%  Similarity=0.194  Sum_probs=101.1

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcC--CCeEEEEccccccHHHHHHcC
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVGFAYHLAGFLLAG  176 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~--~~V~Tv~~G~AaS~aslIlaa  176 (234)
                      +|.|.|.|+ ....++...|..+..++..+.|.|.+|||||++..+..|++.|+.++  .||++++.|.|+|+|.+|+++
T Consensus         4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a   82 (207)
T TIGR00706         4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA   82 (207)
T ss_pred             EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence            688999998 45678888888887767789999999999999999999999999998  899999999999999999999


Q ss_pred             CCCCCEEeccCceE------eeeCCCCc------c------cc------------CHHHHHHHHHHHHHHHHHHHHHHHH
Q 026750          177 GEKGNRSAMPLSRI------ALDSPAGA------A------RG------------QADDIRNEADELLRVRDYIFKELSR  226 (234)
Q Consensus       177 G~kgkR~a~PnAri------MIHqP~~~------~------~G------------~a~di~~~a~el~~lr~~i~~iya~  226 (234)
                      |++  |++.|++.+      |-|.....      .      .|            +..+.+..-+.|+.+.+.+.+.+++
T Consensus        83 aD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~  160 (207)
T TIGR00706        83 ADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAK  160 (207)
T ss_pred             CCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            995  999999875      33332100      0      01            1223333344566677777777777


Q ss_pred             hhCCCC
Q 026750          227 KTDYEG  232 (234)
Q Consensus       227 ~TG~~~  232 (234)
                      .-|.+.
T Consensus       161 ~R~~~~  166 (207)
T TIGR00706       161 GRNLPV  166 (207)
T ss_pred             cCCCCH
Confidence            666553

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.26  E-value=1.4e-11  Score=113.45  Aligned_cols=90  Identities=24%  Similarity=0.272  Sum_probs=77.2

Q ss_pred             EEEECcccChhh-------HHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCC--CeEEEEccccccH
Q 026750           99 VIFIGQNIDEEF-------SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKS--PVGTHCVGFAYHL  169 (234)
Q Consensus        99 iIfL~g~Id~e~-------a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~--~V~Tv~~G~AaS~  169 (234)
                      +|.+.|.|....       .+.+.+.|..+...++.+.|.|.||||||++.++..||+.|+.++.  ||+..+.++|||.
T Consensus        63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG  142 (317)
T COG0616          63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG  142 (317)
T ss_pred             EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence            466777776433       5566666777777778999999999999999999999999999986  5999999999999


Q ss_pred             HHHHHcCCCCCCEEeccCceE
Q 026750          170 AGFLLAGGEKGNRSAMPLSRI  190 (234)
Q Consensus       170 aslIlaaG~kgkR~a~PnAri  190 (234)
                      |.+|.+++++  .+|.|+|.+
T Consensus       143 GY~IA~aAd~--I~a~p~si~  161 (317)
T COG0616         143 GYYIALAADK--IVADPSSIT  161 (317)
T ss_pred             hhhhhccCCE--EEecCCcee
Confidence            9999999995  999999874

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.25  E-value=7.1e-11  Score=116.82  Aligned_cols=133  Identities=16%  Similarity=0.089  Sum_probs=105.5

Q ss_pred             EEEECcccChh-------hHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhc---CCCeEEEEcccccc
Q 026750           99 VIFIGQNIDEE-------FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYH  168 (234)
Q Consensus        99 iIfL~g~Id~e-------~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~---~~~V~Tv~~G~AaS  168 (234)
                      +|++.|+|.+.       ..+.+.+.|..+..++..+.|.|+||||||++.++..|++.|+..   +.||.+.+.|+|+|
T Consensus       312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS  391 (584)
T TIGR00705       312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS  391 (584)
T ss_pred             EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence            79999999852       245677777777766678999999999999999999999998755   47999999999999


Q ss_pred             HHHHHHcCCCCCCEEeccCceE------eeeCCC----------------------Ccc-ccCHHHHHHHHHHHHHHHHH
Q 026750          169 LAGFLLAGGEKGNRSAMPLSRI------ALDSPA----------------------GAA-RGQADDIRNEADELLRVRDY  219 (234)
Q Consensus       169 ~aslIlaaG~kgkR~a~PnAri------MIHqP~----------------------~~~-~G~a~di~~~a~el~~lr~~  219 (234)
                      .|.+|.++|++  +++.|++.+      +.+...                      ... ..+.++.+...+.++++.+.
T Consensus       392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~  469 (584)
T TIGR00705       392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR  469 (584)
T ss_pred             HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999995  999999977      555210                      001 12456677777788888888


Q ss_pred             HHHHHHHhhCCCCC
Q 026750          220 IFKELSRKTDYEGF  233 (234)
Q Consensus       220 i~~iya~~TG~~~e  233 (234)
                      +.+..++..|++.|
T Consensus       470 F~~~Va~~R~l~~e  483 (584)
T TIGR00705       470 FLSVVSAGRNLTPT  483 (584)
T ss_pred             HHHHHHhhCCCCHH
Confidence            88888887777654

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.22  E-value=1.2e-10  Score=97.97  Aligned_cols=115  Identities=14%  Similarity=0.057  Sum_probs=95.0

Q ss_pred             hHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHh---cCCCeEEEEccccccHHHHHHcCCCCCCEEecc
Q 026750          110 FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQS---LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP  186 (234)
Q Consensus       110 ~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~---~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~P  186 (234)
                      ..+.+...+..+..++..+.|.|.+|||||++.....+++.++.   .+.||.+++.|.|+|.|..|+++|+.  |++.|
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~  100 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP  100 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence            35688888888887777889999999999999888887776654   46899999999999999999999995  99999


Q ss_pred             CceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          187 LSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       187 nAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      +++|++|.+..+       .+..-..+..+.+.+.+.+++..|.+.+
T Consensus       101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~  140 (177)
T cd07014         101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPE  140 (177)
T ss_pred             CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999976543       1222346778889999999999887643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.19  E-value=2.8e-10  Score=98.76  Aligned_cols=123  Identities=15%  Similarity=0.232  Sum_probs=100.0

Q ss_pred             hhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcC--CCeEEEEccccccHHHHHHcCCCCCCEEecc
Q 026750          109 EFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP  186 (234)
Q Consensus       109 e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~--~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~P  186 (234)
                      ....++++.|..++.++..+.|.|.+|||||++.....|++.|+.++  .||.+++.|.|+|.|..|+++|+  ++++.|
T Consensus        25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD--~i~a~~  102 (214)
T cd07022          25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAAD--RIVVTP  102 (214)
T ss_pred             ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCC--EEEEcC
Confidence            45678999999988777789999999999999999999999999997  99999999999999999999999  499999


Q ss_pred             CceE------eeeCCCCcc------------cc------------CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          187 LSRI------ALDSPAGAA------------RG------------QADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       187 nAri------MIHqP~~~~------------~G------------~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      ++++      +.|......            .|            +.++-+..-+.++.+.+.+.+.+++..|++.+
T Consensus       103 ~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~  179 (214)
T cd07022         103 TAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAA  179 (214)
T ss_pred             CCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            9985      333321110            11            23455555666778899999999999888764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.05  E-value=3.4e-09  Score=91.89  Aligned_cols=133  Identities=14%  Similarity=0.045  Sum_probs=101.0

Q ss_pred             EEEECcccChhh-------HHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHH---hcCCCeEEEEcccccc
Q 026750           99 VIFIGQNIDEEF-------SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQ---SLKSPVGTHCVGFAYH  168 (234)
Q Consensus        99 iIfL~g~Id~e~-------a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~---~~~~~V~Tv~~G~AaS  168 (234)
                      +|.+.|+|.+..       ..++...|..+..++..+.|.|.+|||||++.+...|++.|+   ..+.||.+++.|.|+|
T Consensus         4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s   83 (211)
T cd07019           4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS   83 (211)
T ss_pred             EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence            466667766532       367888888888877789999999999999999988888665   4567999999999999


Q ss_pred             HHHHHHcCCCCCCEEeccCceEeeeCCC---------------------C-c---c-cc---CHHHHHHHHHHHHHHHHH
Q 026750          169 LAGFLLAGGEKGNRSAMPLSRIALDSPA---------------------G-A---A-RG---QADDIRNEADELLRVRDY  219 (234)
Q Consensus       169 ~aslIlaaG~kgkR~a~PnAriMIHqP~---------------------~-~---~-~G---~a~di~~~a~el~~lr~~  219 (234)
                      .|.+|+++|++  +++.|++++...-..                     . +   . ..   +.++-+.....++++.+.
T Consensus        84 ~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~  161 (211)
T cd07019          84 GGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR  161 (211)
T ss_pred             HHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999995  999999888322211                     0 1   0 00   122333444678889999


Q ss_pred             HHHHHHHhhCCCCC
Q 026750          220 IFKELSRKTDYEGF  233 (234)
Q Consensus       220 i~~iya~~TG~~~e  233 (234)
                      +.+..++..+++.+
T Consensus       162 f~~~Va~~R~~~~~  175 (211)
T cd07019         162 FITLVADARHSTPE  175 (211)
T ss_pred             HHHHHHhhCCCCHH
Confidence            99999999888754

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.83  E-value=1.2e-08  Score=92.69  Aligned_cols=91  Identities=18%  Similarity=0.169  Sum_probs=78.6

Q ss_pred             EECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCC
Q 026750          101 FIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKG  180 (234)
Q Consensus       101 fL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kg  180 (234)
                      .+...|+.+.++.+...+...   ++.++|.|.|+||||.+.++..|.+.|+.++.+++.++-..|.|+|++|++++++ 
T Consensus        67 Pi~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe-  142 (285)
T PF01972_consen   67 PIYRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE-  142 (285)
T ss_pred             ccceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe-
Confidence            455678888888887777654   3456899999999999999999999999999999999999999999999999995 


Q ss_pred             CEEeccCceEeeeCCC
Q 026750          181 NRSAMPLSRIALDSPA  196 (234)
Q Consensus       181 kR~a~PnAriMIHqP~  196 (234)
                       -++.|+|.+-==.|.
T Consensus       143 -IvM~p~a~LGpiDPq  157 (285)
T PF01972_consen  143 -IVMGPGAVLGPIDPQ  157 (285)
T ss_pred             -EEECCCCccCCCCcc
Confidence             899999988755554

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.75  E-value=3.2e-08  Score=92.17  Aligned_cols=93  Identities=14%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             EEEECcccChhhHHHHHHHHhcc-cccCCCCceEEEEeCCCCCccHHHHHHH---HHHhcCCCeEEEEccccccHHHHHH
Q 026750           99 VIFIGQNIDEEFSNQILATMLYL-DSVDDSKRVYMYINGPGGDVTPTLAIYD---TMQSLKSPVGTHCVGFAYHLAGFLL  174 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L-~~~~~~k~I~L~INSPGG~v~aglaIyD---~m~~~~~~V~Tv~~G~AaS~aslIl  174 (234)
                      +|.+.|.|+......+...+..+ ....+.+.|.|.||||||+|.+.--++.   .++..+.||++.+.++|||.|.+|.
T Consensus        94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA  173 (330)
T PRK11778         94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA  173 (330)
T ss_pred             EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence            57788999975543332322221 1112236899999999999987444444   4455567999999999999999999


Q ss_pred             cCCCCCCEEeccCceEeee
Q 026750          175 AGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       175 aaG~kgkR~a~PnAriMIH  193 (234)
                      |++++  .++.|.+.+...
T Consensus       174 saAD~--I~A~P~a~vGSI  190 (330)
T PRK11778        174 CVADK--IIAAPFAIVGSI  190 (330)
T ss_pred             HhCCE--EEECCCCeEEee
Confidence            99995  899998876543

>PRK10949 protease 4; Provisional

Probab=98.73  E-value=1e-07  Score=95.20  Aligned_cols=89  Identities=21%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             EEEECcccChh-------hHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhc---CCCeEEEEcccccc
Q 026750           99 VIFIGQNIDEE-------FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYH  168 (234)
Q Consensus        99 iIfL~g~Id~e-------~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~---~~~V~Tv~~G~AaS  168 (234)
                      +|++.|.|.+.       ..+.++.+|.....++..+.|.|.||||||++.+...|++.|+..   +.||++...++|||
T Consensus       330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS  409 (618)
T PRK10949        330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS  409 (618)
T ss_pred             EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence            68899999753       256788888888878889999999999999999999999999755   47999999999999


Q ss_pred             HHHHHHcCCCCCCEEeccCce
Q 026750          169 LAGFLLAGGEKGNRSAMPLSR  189 (234)
Q Consensus       169 ~aslIlaaG~kgkR~a~PnAr  189 (234)
                      .|.+|.+++++  .++.|.+.
T Consensus       410 ggY~iA~aad~--I~a~p~t~  428 (618)
T PRK10949        410 GGYWISTPANY--IVASPSTL  428 (618)
T ss_pred             HHHHHHHhcCE--EEECCCCc
Confidence            99999999995  89999765

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.66  E-value=2.4e-07  Score=80.93  Aligned_cols=90  Identities=14%  Similarity=0.175  Sum_probs=78.0

Q ss_pred             CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhc---CCCeEEEEccccccHHHHHHcCCCC
Q 026750          103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAGFLLAGGEK  179 (234)
Q Consensus       103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~---~~~V~Tv~~G~AaS~aslIlaaG~k  179 (234)
                      .+..++.....++..|..+..++..+.|.|.+|||||.+.+...|++.|+..   +.||.+++.| |+|.|.+|.+++++
T Consensus        23 ~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~  101 (222)
T cd07018          23 GGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE  101 (222)
T ss_pred             cCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE
Confidence            3444556778899999999887778999999999999999999999999754   5799999987 99999999999994


Q ss_pred             CCEEeccCceEeeeCC
Q 026750          180 GNRSAMPLSRIALDSP  195 (234)
Q Consensus       180 gkR~a~PnAriMIHqP  195 (234)
                        +++.|++.+.+.-.
T Consensus       102 --I~a~p~~~vg~iGv  115 (222)
T cd07018         102 --IYLNPSGSVELTGL  115 (222)
T ss_pred             --EEECCCceEEeecc
Confidence              99999999999744

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2.3e-06  Score=82.13  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=83.2

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEc---cccccHHHHHHc
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLLA  175 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~---G~AaS~aslIla  175 (234)
                      ++.+.|+|++.+++.+...|..-+. +....+.|.+|+|||-+.+...|.+.+...+.||..++.   +.|+|+|++|+.
T Consensus        30 vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m  108 (436)
T COG1030          30 VIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILM  108 (436)
T ss_pred             EEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHH
Confidence            6789999999999999888876554 446789999999999999999999999999999777765   369999999999


Q ss_pred             CCCCCCEEeccCceEeeeCCC
Q 026750          176 GGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       176 aG~kgkR~a~PnAriMIHqP~  196 (234)
                      +.+.  -+|.|.+.+-=-+|-
T Consensus       109 ~~hi--aaMAPgT~iGaa~Pi  127 (436)
T COG1030         109 ATHI--AAMAPGTNIGAATPI  127 (436)
T ss_pred             hcCh--hhhCCCCccccccee
Confidence            9995  688899988888885

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=98.04  E-value=3.9e-05  Score=67.79  Aligned_cols=96  Identities=11%  Similarity=0.146  Sum_probs=77.5

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceE-EEEeCCCCCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCC
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY-MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG  177 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG  177 (234)
                      -|.+.+++-+--+....+.|+.-.   ...-++ +.+|||||+|..++++-..|+..+.++..-...+|+|++.++|++|
T Consensus        78 ~VvVse~~a~~da~sal~~lir~~---G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagG  154 (245)
T COG3904          78 PVVVSEPGANVDAASALGRLIRKA---GLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGG  154 (245)
T ss_pred             eEEEcCCCCCccHHHHHHHHHhcc---CceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcc
Confidence            456777777655555555555322   223344 7789999999999999999999999988888899999999999999


Q ss_pred             CCCCEEeccCceEeeeCCCCcc
Q 026750          178 EKGNRSAMPLSRIALDSPAGAA  199 (234)
Q Consensus       178 ~kgkR~a~PnAriMIHqP~~~~  199 (234)
                      .  .|++-+.+.|-+||+....
T Consensus       155 v--rRvve~~ayiGVHq~~~~g  174 (245)
T COG3904         155 V--RRVVEDFAYIGVHQITTTG  174 (245)
T ss_pred             e--eeeecccceeeeeeccccC
Confidence            8  5999999999999997543

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.13  E-value=0.0044  Score=61.91  Aligned_cols=85  Identities=12%  Similarity=0.092  Sum_probs=70.7

Q ss_pred             hhhHHHHHHHHhcccccCCCCceEEEEeC-CCCCccHHHHHHHHHHhcC---CCeEEEEccccccHHHHHHcCCCCCCEE
Q 026750          108 EEFSNQILATMLYLDSVDDSKRVYMYING-PGGDVTPTLAIYDTMQSLK---SPVGTHCVGFAYHLAGFLLAGGEKGNRS  183 (234)
Q Consensus       108 ~e~a~~iia~Ll~L~~~~~~k~I~L~INS-PGG~v~aglaIyD~m~~~~---~~V~Tv~~G~AaS~aslIlaaG~kgkR~  183 (234)
                      +....+++.+|.....++..+.|.|.||+ |||.+.....|++.|+..+   .||+++..+. +|.+.+|.+++++  .+
T Consensus        75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD~--I~  151 (584)
T TIGR00705        75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFADE--II  151 (584)
T ss_pred             CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCCE--EE
Confidence            34567899999999888889999999996 5777777788999998664   7899988765 6999999999985  89


Q ss_pred             eccCceEeeeCC
Q 026750          184 AMPLSRIALDSP  195 (234)
Q Consensus       184 a~PnAriMIHqP  195 (234)
                      +.|.+.+.++-.
T Consensus       152 ~~p~G~v~~~G~  163 (584)
T TIGR00705       152 LNPMGSVDLHGF  163 (584)
T ss_pred             ECCCceEEeece
Confidence            999999977643

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=97.02  E-value=0.003  Score=52.75  Aligned_cols=91  Identities=16%  Similarity=0.101  Sum_probs=66.6

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCcc-----------------HHHHHHHHHHhcCCCeEEEEcc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVT-----------------PTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~-----------------aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ++.++.+++.+.+..++.+++.+-|.|.-+    |.|+++.                 ....++..|..++.||.+.+.|
T Consensus        23 ~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G  102 (195)
T cd06558          23 LSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG  102 (195)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            467788889998888876444333333322    3444432                 1234556677888999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|.+.|..+++++|-  |++.++++|.+..+..+
T Consensus       103 ~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G  134 (195)
T cd06558         103 AALGGGLELALACDI--RIAAEDAKFGLPEVKLG  134 (195)
T ss_pred             eeecHHHHHHHhCCE--EEecCCCEEechhhhcC
Confidence            999999999999994  99999999998877654

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=96.75  E-value=0.0085  Score=55.98  Aligned_cols=99  Identities=18%  Similarity=0.175  Sum_probs=72.8

Q ss_pred             CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHHH---hcCCCeEEEEccc
Q 026750           96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTMQ---SLKSPVGTHCVGF  165 (234)
Q Consensus        96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m~---~~~~~V~Tv~~G~  165 (234)
                      ++++-..+|-++++........+..-+. . .-||.-+++|||..+..       +-+|...+.   ..+.|+.+++.|-
T Consensus       122 ~e~~~~~~G~~~peg~rKa~R~m~lA~~-f-~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe  199 (319)
T PRK05724        122 KEKIRRNFGMPRPEGYRKALRLMKMAEK-F-GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE  199 (319)
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            5566667888888766555443333222 2 46899999999976531       234444444   6678999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |.|.|++.++.++.  .++.|+|.+.+=.|.+.
T Consensus       200 g~sGGAla~~~aD~--v~m~~~A~~svisPEg~  230 (319)
T PRK05724        200 GGSGGALAIGVGDR--VLMLEYSTYSVISPEGC  230 (319)
T ss_pred             ccHHHHHHHhccCe--eeeecCceEeecCHHHH
Confidence            99999999988884  89999999999988754

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=96.74  E-value=0.0082  Score=56.01  Aligned_cols=99  Identities=18%  Similarity=0.160  Sum_probs=72.8

Q ss_pred             CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHHH---hcCCCeEEEEccc
Q 026750           96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTMQ---SLKSPVGTHCVGF  165 (234)
Q Consensus        96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m~---~~~~~V~Tv~~G~  165 (234)
                      ++++-...|-++++-.......+. +.... .-||.-++|+||..+..       +-+|...+.   ....|+.+++.|-
T Consensus       122 ~e~~~~~~G~~~p~g~rKa~R~m~-lA~~f-~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe  199 (316)
T TIGR00513       122 KEKLRRNFGMPAPEGYRKALRLMK-MAERF-KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE  199 (316)
T ss_pred             cccccccCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence            455556678888876655444333 22222 46899999999987432       334555554   5578999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |+|.|++.++.++  ..++.|+|.+.+=.|.+.
T Consensus       200 ggsGGAla~~~aD--~v~m~~~a~~sVisPEg~  230 (316)
T TIGR00513       200 GGSGGALAIGVGD--KVNMLEYSTYSVISPEGC  230 (316)
T ss_pred             cccHHHhhhccCC--EEEEecCceEEecCHHHH
Confidence            9999999888888  489999999999999764

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK10949 protease 4; Provisional

Probab=96.73  E-value=0.018  Score=58.12  Aligned_cols=86  Identities=15%  Similarity=0.088  Sum_probs=70.1

Q ss_pred             hhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHH-HHHHHHHHhcC---CCeEEEEccccccHHHHHHcCCCCCCEE
Q 026750          108 EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT-LAIYDTMQSLK---SPVGTHCVGFAYHLAGFLLAGGEKGNRS  183 (234)
Q Consensus       108 ~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ag-laIyD~m~~~~---~~V~Tv~~G~AaS~aslIlaaG~kgkR~  183 (234)
                      +....+++..|.....++..+.|.|.||||||...+. ..|++.|+..+   .||+++ ...+++.+.+|++++++  .+
T Consensus        94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~  170 (618)
T PRK10949         94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY  170 (618)
T ss_pred             cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence            3455689999998888888999999999999877666 58999887664   689987 44557888899989985  89


Q ss_pred             eccCceEeeeCCC
Q 026750          184 AMPLSRIALDSPA  196 (234)
Q Consensus       184 a~PnAriMIHqP~  196 (234)
                      +.|.+.+.++-..
T Consensus       171 l~P~G~v~~~G~~  183 (618)
T PRK10949        171 LSPQGVVDLHGFA  183 (618)
T ss_pred             ECCCceEEEeeee
Confidence            9999999887644

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=96.58  E-value=0.01  Score=55.53  Aligned_cols=99  Identities=14%  Similarity=0.080  Sum_probs=72.1

Q ss_pred             CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHH---HhcCCCeEEEEccc
Q 026750           96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTM---QSLKSPVGTHCVGF  165 (234)
Q Consensus        96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m---~~~~~~V~Tv~~G~  165 (234)
                      ++++-..+|-++++-.......+..-+ .. .-||.-+|+|||..+..       +-+|...+   -..+.|+.+++.|-
T Consensus       125 ~e~~~~~~G~~~p~g~rKa~Rlm~lA~-~f-~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGe  202 (322)
T CHL00198        125 KENVLRNFGMPSPGGYRKALRLMKHAN-KF-GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE  202 (322)
T ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHHH-Hc-CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCc
Confidence            445545567788876655544433222 22 46899999999987531       23555544   46678999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |.|.|++.++.++  ..++.++|.+.+=.|.+.
T Consensus       203 ggsGGAlal~~aD--~V~m~e~a~~sVisPEg~  233 (322)
T CHL00198        203 GGSGGALGIGIGD--SIMMLEYAVYTVATPEAC  233 (322)
T ss_pred             ccHHHHHhhhcCC--eEEEeCCeEEEecCHHHH
Confidence            9999999888888  489999999999999754

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=96.52  E-value=0.013  Score=59.91  Aligned_cols=99  Identities=15%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCcc-------HHHHHHHHHH---hcCCCeEEEEccc
Q 026750           96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT-------PTLAIYDTMQ---SLKSPVGTHCVGF  165 (234)
Q Consensus        96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~-------aglaIyD~m~---~~~~~V~Tv~~G~  165 (234)
                      ++|+-..+|-++++-.......+. +.... .-||.-+|+|||..+.       .+-+|...+.   ....|+.++++|-
T Consensus       213 ke~~~rnfG~~~peGyRKAlRlmk-LAekf-gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGe  290 (762)
T PLN03229        213 KENIMRNFGMPTPHGYRKALRMMY-YADHH-GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGE  290 (762)
T ss_pred             cccccccCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            444555666666665544443333 22222 4689999999998762       3445665555   5568999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |+|.|++.++.++.  .+|.|+|.+.+=.|.+.
T Consensus       291 ggSGGAlA~g~aD~--VlMle~A~~sVisPEga  321 (762)
T PLN03229        291 GGSGGALAIGCANK--LLMLENAVFYVASPEAC  321 (762)
T ss_pred             cchHHHHHhhcCCE--EEEecCCeEEecCHHHH
Confidence            99999999999984  89999999999888764

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=96.35  E-value=0.025  Score=51.31  Aligned_cols=99  Identities=19%  Similarity=0.090  Sum_probs=72.3

Q ss_pred             CCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHHH---hcCCCeEEEEccc
Q 026750           96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTMQ---SLKSPVGTHCVGF  165 (234)
Q Consensus        96 ~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m~---~~~~~V~Tv~~G~  165 (234)
                      ++++...+|-++++-.......+. +.... .-||.-++||||..+..       +-.|...+.   ..+.|+.+++.|-
T Consensus        69 ~d~~~~~~G~~~~~g~rKa~R~~~-lA~~~-~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~  146 (256)
T PRK12319         69 QDNLKRNFGQPHPEGYRKALRLMK-QAEKF-GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE  146 (256)
T ss_pred             ccceeeeCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            445556778888876555544333 32222 46899999999987522       234555544   4468999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |.|.|++.++.++.  .++.|++.+.+=.|.+.
T Consensus       147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~  177 (256)
T PRK12319        147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGF  177 (256)
T ss_pred             cCcHHHHHhhcCCE--EEEecCceEEEcCHHHH
Confidence            99999999998884  89999999999999753

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=96.22  E-value=0.019  Score=55.46  Aligned_cols=91  Identities=14%  Similarity=0.102  Sum_probs=65.9

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccH-------HHHHHHHH---HhcCCCeEEEEccccccHHHHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTM---QSLKSPVGTHCVGFAYHLAGFL  173 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~a-------glaIyD~m---~~~~~~V~Tv~~G~AaS~aslI  173 (234)
                      |-++++-.......+..-+. . .-||.-+||+||..+..       +-+|...+   -....|+.++++|-+.|.|++.
T Consensus       200 G~~~peGyRKAlR~mklAek-f-~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla  277 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEK-F-GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA  277 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence            45666655544443332222 2 46899999999976532       23565555   4556899999999999999999


Q ss_pred             HcCCCCCCEEeccCceEeeeCCCCc
Q 026750          174 LAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       174 laaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ++.|+  ..++.|||.+.+=.|.+.
T Consensus       278 lg~aD--~VlMle~A~ysVisPEga  300 (431)
T PLN03230        278 IGCGN--RMLMMENAVYYVASPEAC  300 (431)
T ss_pred             hhcCC--EEEEecCCEEEecCHHHH
Confidence            99898  489999999999988653

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=96.11  E-value=0.044  Score=48.47  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=64.5

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH--------------HHHHHHHHHhcCCCeEEEEccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP--------------TLAIYDTMQSLKSPVGTHCVGF  165 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a--------------glaIyD~m~~~~~~V~Tv~~G~  165 (234)
                      ++.++..++.+.+..++.++..+-  |.|.+      .|+|+..              ...+++.|..++.||.+.+.|.
T Consensus        29 l~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~  106 (259)
T PRK06688         29 LTAAMYQALADALEAAATDPAVRV--VVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGP  106 (259)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence            778888888888888775433322  33343      3344321              1245667778899999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |.+.|.-|++++|-  |++.++++|-+....-|
T Consensus       107 a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G  137 (259)
T PRK06688        107 AVGVGVSLALACDL--VYASESAKFSLPFAKLG  137 (259)
T ss_pred             eecHHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence            99999999999994  99999998887655433

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.03  E-value=0.054  Score=48.64  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCc----------cHHHHHHHHHH---hcCCCeEEEEccccccHHHH
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV----------TPTLAIYDTMQ---SLKSPVGTHCVGFAYHLAGF  172 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v----------~aglaIyD~m~---~~~~~V~Tv~~G~AaS~asl  172 (234)
                      ++-+-+......+...-..+..-||..++++||=.+          .++-.+.+.+.   ..+.|+.+++.|-+.|.|.+
T Consensus        45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l  124 (238)
T TIGR03134        45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL  124 (238)
T ss_pred             CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence            554444444444443211224579999999999553          33333334444   44599999999999998888


Q ss_pred             HHcCCCCCCEEeccCceEeeeCCCCc---cccCHHHHHHHHHHHHH
Q 026750          173 LLAGGEKGNRSAMPLSRIALDSPAGA---ARGQADDIRNEADELLR  215 (234)
Q Consensus       173 IlaaG~kgkR~a~PnAriMIHqP~~~---~~G~a~di~~~a~el~~  215 (234)
                      -+..+. ...+++|++.+-+=.|.+.   .+-+.+++++.++++..
T Consensus       125 amg~~a-d~v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~  169 (238)
T TIGR03134       125 AHGLQA-DRIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPV  169 (238)
T ss_pred             HHccCc-CeEEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhhh
Confidence            886422 2589999999988888754   24555565555555443

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=95.91  E-value=0.057  Score=47.94  Aligned_cols=95  Identities=9%  Similarity=0.083  Sum_probs=66.5

Q ss_pred             EEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH------------------HHHHHH
Q 026750          100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT------------------LAIYDT  150 (234)
Q Consensus       100 IfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag------------------laIyD~  150 (234)
                      |.|+.+     ++.++..++.+.|..++.+++.+  .|.|.+.|      +|+...                  ..++..
T Consensus        16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr--~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (260)
T PRK07511         16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIR--AVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRA   93 (260)
T ss_pred             EEECCcccccCCCHHHHHHHHHHHHHhccCCCeE--EEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence            456554     67788888888888776543222  23344433      443210                  235566


Q ss_pred             HHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       151 m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |...+.||.+.+.|.|.+.|..|++++|  -|++.++++|-+..-.-|
T Consensus        94 l~~~~kpvIAav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G  139 (260)
T PRK07511         94 IRAFPKPVIAAVEGAAAGAGFSLALACD--LLVAARDAKFVMAYVKVG  139 (260)
T ss_pred             HHcCCCCEEEEECCeeehHHHHHHHhCC--EEEeeCCCEEeccccccC
Confidence            7788999999999999999999999999  499999998887554433

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=95.77  E-value=0.082  Score=47.56  Aligned_cols=89  Identities=19%  Similarity=0.204  Sum_probs=64.4

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH-------------------HHHHHHHHhcCCCeEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT-------------------LAIYDTMQSLKSPVGT  160 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag-------------------laIyD~m~~~~~~V~T  160 (234)
                      ++.++..++.+.+..++.++..+  .|.|.+.      |+|+..-                   ..+++.|..++.||.+
T Consensus        41 l~~~~~~eL~~~l~~~~~d~~vr--~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  118 (277)
T PRK08258         41 LTFESYAELRDLFRELVYADDVK--AVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIA  118 (277)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            67778888888888776433222  2334443      4444321                   1356677788999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+.|.|.+.|.-|++++|-  |++.++++|.+....-|
T Consensus       119 aV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  154 (277)
T PRK08258        119 AVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVG  154 (277)
T ss_pred             EECCeeehHHHHHHHhCCE--EEecCCCEEeccccccC
Confidence            9999999999999999994  99999999988766544

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=95.71  E-value=0.083  Score=46.77  Aligned_cols=88  Identities=8%  Similarity=0.042  Sum_probs=63.1

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEe------CCCCCccHH------------HHHHHHHHhcCCCeEEEEcccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYIN------GPGGDVTPT------------LAIYDTMQSLKSPVGTHCVGFA  166 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~IN------SPGG~v~ag------------laIyD~m~~~~~~V~Tv~~G~A  166 (234)
                      ++.++.+++.+.+..++.++   ++. |.|.      |.|+|+..-            ..++..|..++.||.+.+.|.|
T Consensus        24 l~~~~~~~l~~a~~~~~~d~---~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  100 (248)
T PRK06072         24 LNLEMRNEFISKLKQINADP---KIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVT  100 (248)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence            67788888888888776543   333 2333      334554320            1245567778899999999999


Q ss_pred             ccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       167 aS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ...|.-|++++|-  |++.++++|-+....-|
T Consensus       101 ~GgG~~lal~cD~--~ia~~~a~f~~~~~~~G  130 (248)
T PRK06072        101 AGACIGIALSTDF--KFASRDVKFVTAFQRLG  130 (248)
T ss_pred             ehHHHHHHHhCCE--EEEcCCCEEecchhhcC
Confidence            9999999999994  99999999877555433

>PRK05869 enoyl-CoA hydratase; Validated

Probab=95.67  E-value=0.095  Score=45.85  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=67.3

Q ss_pred             EEECcc----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH---------------HHHHHHHHhc
Q 026750          100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT---------------LAIYDTMQSL  154 (234)
Q Consensus       100 IfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag---------------laIyD~m~~~  154 (234)
                      |.|+.+    ++.+...++.+.+..++.+++.+-  +.|.+.|      +++...               ..+++.|..+
T Consensus        21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~--vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (222)
T PRK05869         21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVAA--VILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAI   98 (222)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence            445544    777888888888888875443332  3445444      443221               2355667888


Q ss_pred             CCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       155 ~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.||.+.+.|.|...|..|++++|-  |++.++++|-+-...-|
T Consensus        99 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  140 (222)
T PRK05869         99 PKPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAG  140 (222)
T ss_pred             CCCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccC
Confidence            9999999999999999999999994  99999988877544433

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=95.51  E-value=0.089  Score=47.02  Aligned_cols=48  Identities=15%  Similarity=0.051  Sum_probs=42.0

Q ss_pred             HHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCC
Q 026750          148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG  197 (234)
Q Consensus       148 yD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~  197 (234)
                      ++.|..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+..+.-
T Consensus       101 ~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~  148 (272)
T PRK06210        101 YHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARR  148 (272)
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhc
Confidence            56677889999999999999999999999994  9999999998765543

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=95.49  E-value=0.11  Score=46.11  Aligned_cols=91  Identities=12%  Similarity=0.084  Sum_probs=64.1

Q ss_pred             EEECcc----cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH------------HHHHHHHHhcCCC
Q 026750          100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT------------LAIYDTMQSLKSP  157 (234)
Q Consensus       100 IfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag------------laIyD~m~~~~~~  157 (234)
                      |.|+.+    ++.++..++.+.+..++.++..+  .|.|-+.      |+|+.+.            ..+++.|..++.|
T Consensus        14 itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr--~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP   91 (251)
T TIGR03189        14 LRLARPKANIVDAAMIAALSAALGEHLEDSALR--AVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVP   91 (251)
T ss_pred             EEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCce--EEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCC
Confidence            455655    77888888888888877543322  2334343      4444320            1245567788999


Q ss_pred             eEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750          158 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDS  194 (234)
Q Consensus       158 V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHq  194 (234)
                      |.+.+.|.|.+.|.-|.+++|-  |++.++++|-+=.
T Consensus        92 vIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe  126 (251)
T TIGR03189        92 ILVAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPE  126 (251)
T ss_pred             EEEEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCch
Confidence            9999999999999999999994  8888888876633

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=95.43  E-value=0.13  Score=45.57  Aligned_cols=82  Identities=13%  Similarity=0.204  Sum_probs=60.1

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH----------HHHHHHHHHhcCCCeEEEEccccccH
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP----------TLAIYDTMQSLKSPVGTHCVGFAYHL  169 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a----------glaIyD~m~~~~~~V~Tv~~G~AaS~  169 (234)
                      ++.++..++.+.+..++. +..  -.|.|-+      .|+|+..          ...+++.|..++.||.+.+.|.|.+.
T Consensus        24 l~~~~~~~l~~al~~~~~-~~v--r~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg  100 (243)
T PRK07854         24 LNAELCEELREAVRKAVD-ESA--RAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA  100 (243)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCc--eEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence            778888888888877662 222  2333443      4455542          12355667788999999999999999


Q ss_pred             HHHHHcCCCCCCEEeccCceEee
Q 026750          170 AGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       170 aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      |.-|++++|-  |++.++++|.+
T Consensus       101 G~~lal~cD~--~ia~~~a~f~~  121 (243)
T PRK07854        101 GLQLAMACDL--RVVAPEAYFQF  121 (243)
T ss_pred             HHHHHHhCCE--EEEcCCCEEec
Confidence            9999999994  99999988765

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=95.41  E-value=0.039  Score=45.58  Aligned_cols=79  Identities=16%  Similarity=0.206  Sum_probs=49.3

Q ss_pred             HHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc---cc------c--------------------
Q 026750          151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA---AR------G--------------------  201 (234)
Q Consensus       151 m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~---~~------G--------------------  201 (234)
                      .+..+.||++++.++|+|.+.+|+++|++  .++.|.+.+...-....   +.      |                    
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~   79 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP   79 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence            35677899999999999999999999995  89999998876544311   00      1                    


Q ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026750          202 -QADDIRNEADELLRVRDYIFKELSRKTDYE  231 (234)
Q Consensus       202 -~a~di~~~a~el~~lr~~i~~iya~~TG~~  231 (234)
                       +.++-+..-+.|+.+.+.+.+..++.-|.+
T Consensus        80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~  110 (154)
T PF01343_consen   80 MSEEERENLQELLDELYDQFVNDVAEGRGLS  110 (154)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence             123334444556667777777777766654

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=95.40  E-value=0.09  Score=46.85  Aligned_cols=88  Identities=20%  Similarity=0.185  Sum_probs=60.4

Q ss_pred             EEECcc----cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC-------CCccH--------------HHHHHHHHHh
Q 026750          100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG-------GDVTP--------------TLAIYDTMQS  153 (234)
Q Consensus       100 IfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG-------G~v~a--------------glaIyD~m~~  153 (234)
                      |.|+.+    ++.++..++.+.+..++.++   ++. |.+.+.|       +|+..              ...++..|..
T Consensus        16 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~   92 (261)
T PRK03580         16 ITLDRPKANAIDAKTSFAMGEVFLNFRDDP---ELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFD   92 (261)
T ss_pred             EEECCccccCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHh
Confidence            445544    56677777777777766433   232 3333333       33321              1234566778


Q ss_pred             cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750          154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      ++.||.+.+.|.|.+.|.-|++++|-  |++.++++|-+
T Consensus        93 ~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~  129 (261)
T PRK03580         93 LDKPVIAAVNGYAFGGGFELALAADF--IVCADNASFAL  129 (261)
T ss_pred             CCCCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeC
Confidence            89999999999999999999999994  99998888765

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=95.39  E-value=0.13  Score=45.72  Aligned_cols=96  Identities=15%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             EEECcc----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH-----------------HHHHHHHH
Q 026750          100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT-----------------LAIYDTMQ  152 (234)
Q Consensus       100 IfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag-----------------laIyD~m~  152 (234)
                      |.|+.+    ++.++..++.+.|..++.+++.+  .|.|.+.|      +|+..-                 ..+++.|.
T Consensus        17 itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr--~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (257)
T PRK06495         17 VTLDNPPVNALSRELRDELIAVFDEISERPDVR--VVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIR   94 (257)
T ss_pred             EEECCCccccCCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHH
Confidence            445554    67777888888888776433222  23334444      333210                 12455677


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCcc
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA  199 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~  199 (234)
                      .++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+-...-|.
T Consensus        95 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl  139 (257)
T PRK06495         95 ECAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGL  139 (257)
T ss_pred             hCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCc
Confidence            888999999999999999999999994  999999988776555444

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=95.33  E-value=0.13  Score=45.46  Aligned_cols=89  Identities=16%  Similarity=0.131  Sum_probs=62.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH--------------HHHHHHHHHhcCCCeEEEEccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP--------------TLAIYDTMQSLKSPVGTHCVGF  165 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a--------------glaIyD~m~~~~~~V~Tv~~G~  165 (234)
                      ++.++.+++.+.+..++.++..+-  +.|.+      .|+++..              ...++..|..++.||.+.+.|.
T Consensus        30 l~~~~~~~L~~~l~~~~~d~~vr~--vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  107 (251)
T PRK06023         30 ITRAMYATMAKALKAADADDAIRA--HVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGL  107 (251)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence            677777888887777764332222  22233      3344321              1235567888899999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |...|.-|.+++|-  |++.++++|.+....-|
T Consensus       108 a~GgG~~la~acD~--ria~~~a~f~~pe~~~G  138 (251)
T PRK06023        108 AIGIGTTIHLHCDL--TFASPRSLFRTPFVDLA  138 (251)
T ss_pred             eecHHHHHHHhCCE--EEEeCCCEecCcccccC
Confidence            99999999999994  99999999887554433

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=95.32  E-value=0.12  Score=46.11  Aligned_cols=86  Identities=15%  Similarity=0.212  Sum_probs=61.8

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a---------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.+...++.+.+..++.++..+  .|.|-+.|       +|+..               ...+++.|...+.||.+.+-
T Consensus        31 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  108 (256)
T PRK06143         31 LGTPVILALTQALRWLAADPDVR--VLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIP  108 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCcE--EEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            67788888888888877543222  33444433       33321               12256677788999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      |.|.+.|.-|.++||-  |++.++++|.+=..
T Consensus       109 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~  138 (256)
T PRK06143        109 GWCLGGGLELAAACDL--RIAAHDAQFGMPEV  138 (256)
T ss_pred             CEEeehhHHHHHhCCE--EEecCCCEEeCCcc
Confidence            9999999999999994  99999988876333

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=95.29  E-value=0.059  Score=47.12  Aligned_cols=89  Identities=13%  Similarity=0.101  Sum_probs=67.1

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCc---------------------cHHHHHHHHHHhcCCCeEEEEcc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV---------------------TPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v---------------------~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ++.+...++...|..++.++..+  .+.|.+.|+..                     .....++..|..++.||.+.+.|
T Consensus        22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G   99 (245)
T PF00378_consen   22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG   99 (245)
T ss_dssp             BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence            67788899999999888755434  45555554333                     22334677888899999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|.+.|..+++++|  -|++.++++|-+-...-|
T Consensus       100 ~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G  131 (245)
T PF00378_consen  100 HAVGGGFELALACD--FRIAAEDAKFGFPEVRLG  131 (245)
T ss_dssp             EEETHHHHHHHHSS--EEEEETTTEEETGGGGGT
T ss_pred             cccccccccccccc--eEEeecccceeeeecccC
Confidence            99999999999999  599999999655444333

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=95.28  E-value=0.12  Score=46.06  Aligned_cols=89  Identities=10%  Similarity=0.089  Sum_probs=62.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeCC------CCCccH--------------H-------HHHHHHHHhcCCC
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGP------GGDVTP--------------T-------LAIYDTMQSLKSP  157 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSP------GG~v~a--------------g-------laIyD~m~~~~~~  157 (234)
                      ++.++..++.+.+..++.+++  ++. |.|.+-      |+++..              +       ..+++.|..++.|
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~--~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  105 (266)
T PRK05981         28 VSIDMLGGLAEALDAIEDGKA--EVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP  105 (266)
T ss_pred             CCHHHHHHHHHHHHHHhcCCC--ceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence            667777778887777654322  132 333333      344321              1       1255677888999


Q ss_pred             eEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          158 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       158 V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |.+.+.|.|...|.-|++++|-  |++.++++|-+..+.-|
T Consensus       106 vIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG  144 (266)
T PRK05981        106 IVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIG  144 (266)
T ss_pred             EEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcC
Confidence            9999999999999999999994  99999999887665533

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=95.26  E-value=0.12  Score=45.99  Aligned_cols=86  Identities=16%  Similarity=0.208  Sum_probs=59.5

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH----------H--------HHHHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP----------T--------LAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a----------g--------laIyD~m~~~~~~V~Tv  161 (234)
                      ++.++..++.+.|..++.++..+  .|.|.+.|      +|+..          .        ..+++.|+.++.||.+.
T Consensus        29 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  106 (262)
T PRK07468         29 LSARMIAELTTAARRLAADAAVR--VVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGR  106 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeE--EEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            56677777777777665432222  23334433      44321          0        12567788899999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      +.|.|.+.|.-|++++|-  |++.++++|-+-..
T Consensus       107 v~G~a~GgG~~lala~D~--ria~~~a~f~~pe~  138 (262)
T PRK07468        107 IQGQAFGGGVGLISVCDV--AIAVSGARFGLTET  138 (262)
T ss_pred             ECCEEEhHHHHHHHhCCE--EEEeCCCEEeCchh
Confidence            999999999999999994  99999888766443

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=95.25  E-value=0.15  Score=45.64  Aligned_cols=84  Identities=17%  Similarity=0.095  Sum_probs=61.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccH-------------HHHHHHHHHhcCCCeEEEEcccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTP-------------TLAIYDTMQSLKSPVGTHCVGFA  166 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~a-------------glaIyD~m~~~~~~V~Tv~~G~A  166 (234)
                      ++.++.+++.+.|..++.++..+  .|.|.      |.|+|+..             ...+++.|..++.||.+.+.|.|
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a  105 (258)
T PRK06190         28 LSAALRRALFAALAEADADDDVD--VVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAA  105 (258)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence            67788888888888776543222  23333      34455432             12456778889999999999999


Q ss_pred             ccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          167 YHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       167 aS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      .+.|.-|++++|-  |++.++++|-+=
T Consensus       106 ~GgG~~lalacD~--~ia~~~a~f~~p  130 (258)
T PRK06190        106 VTGGLELALACDI--LIASERARFADT  130 (258)
T ss_pred             ecHHHHHHHhCCE--EEEeCCCEEECc
Confidence            9999999999994  999998888653

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=95.24  E-value=0.13  Score=45.56  Aligned_cols=89  Identities=13%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccH-------------HHHHHHHHHhcCCCeEEEEcccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTP-------------TLAIYDTMQSLKSPVGTHCVGFA  166 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~a-------------glaIyD~m~~~~~~V~Tv~~G~A  166 (234)
                      ++.++..++.+.+..++.+++.+  .|.|.      |.|+|+..             ...+++.|..++.||.+.+.|.|
T Consensus        26 l~~~~~~~L~~~~~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  103 (255)
T PRK09674         26 LNNALLTQLVNELEAAATDTSIG--VCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYA  103 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcE--EEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence            56777778888877776433222  23333      33444422             12356677888999999999999


Q ss_pred             ccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       167 aS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+.|.-|++++|-  |++.++++|.+-...-|
T Consensus       104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  133 (255)
T PRK09674        104 LGAGCELALLCDI--VIAGENARFGLPEITLG  133 (255)
T ss_pred             ehHHHHHHHhCCE--EEecCCCEEeCchhhcC
Confidence            9999999999994  99999988877554433

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=95.22  E-value=0.14  Score=45.42  Aligned_cols=87  Identities=18%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH----------------------HHHHHHHHhcCCC
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT----------------------LAIYDTMQSLKSP  157 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag----------------------laIyD~m~~~~~~  157 (234)
                      ++.++.+++.+.+..++.++..+  .|.|.+.      |+|+...                      ..+++.|+.++.|
T Consensus        27 l~~~~~~~l~~al~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp  104 (262)
T PRK07509         27 LDFAMFEELIATIKRLKKDRGIR--AVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVP  104 (262)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCCe--EEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCC
Confidence            67788888888888777543222  2333433      4443210                      0133456788999


Q ss_pred             eEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          158 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       158 V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      |.+.+.|.|...|.-|++++|-  |++.++++|-+....
T Consensus       105 vIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~  141 (262)
T PRK07509        105 VIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAK  141 (262)
T ss_pred             EEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhc
Confidence            9999999999999999999994  999999988876643

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=95.10  E-value=0.14  Score=45.46  Aligned_cols=86  Identities=13%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC-------CCCccH--------------HHHHHHHHHhcCCCeEEEEcc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-------GGDVTP--------------TLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-------GG~v~a--------------glaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ++.++..++...|..++.+++.+  .|.|.+.       |+|+..              ...+++.|..++.||.+.+.|
T Consensus        26 l~~~~~~~l~~al~~~~~d~~vr--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G  103 (256)
T TIGR03210        26 FRGQTCDELIHALKDAGYDRQIG--VIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQG  103 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            56677777777777766433222  2223333       444332              012566778889999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      .|.+.|.-|++++|-  |++.++++|-+=.+
T Consensus       104 ~a~GgG~~lal~cD~--~ia~~~a~f~~pe~  132 (256)
T TIGR03210       104 YAIGGGNVLVTICDL--TIASEKAQFGQVGP  132 (256)
T ss_pred             EEehhhHHHHHhCCE--EEEeCCCEEecccc
Confidence            999999999999994  99999998877433

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=95.10  E-value=0.14  Score=45.80  Aligned_cols=84  Identities=17%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC--------CCCccHH--------------HHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP--------GGDVTPT--------------LAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP--------GG~v~ag--------------laIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++..++.+.+..++.+ +.+  .|.|.+.        |+|+..-              ..+++.|..++.||.+.+.
T Consensus        28 l~~~~~~~l~~al~~~~~d-~v~--~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~  104 (261)
T PRK11423         28 LSKVLIDDLMQALSDLNRP-EIR--VVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVE  104 (261)
T ss_pred             CCHHHHHHHHHHHHHHhcC-Cce--EEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            6778888888888877643 222  2344443        3343210              1356667888999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDS  194 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHq  194 (234)
                      |.|...|.-|++++|-  |++.+.++|.+=.
T Consensus       105 G~a~GgG~~lalacD~--~ia~~~a~f~~pe  133 (261)
T PRK11423        105 GSVWGGAFELIMSCDL--IIAASTSTFAMTP  133 (261)
T ss_pred             cEEechHHHHHHhCCE--EEecCCCEecCch
Confidence            9999999999999994  8998888876533

>PLN02600 enoyl-CoA hydratase

Probab=95.10  E-value=0.15  Score=45.21  Aligned_cols=84  Identities=13%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC-------CCCccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-------GGDVTP---------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-------GG~v~a---------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++.+++.+.+..++.++..+-  |.|-+.       |+|+..               ...+++.|..++.||.+.+.
T Consensus        19 l~~~~~~~l~~~~~~~~~d~~vr~--vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~   96 (251)
T PLN02600         19 IGKEMLRGLRSAFEKIQADASARV--VMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVE   96 (251)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceE--EEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence            577777888888877764332222  233333       344321               01244566778999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      |.|.+.|.-|.+++|-  |++.++++|.+-
T Consensus        97 G~a~GgG~~lala~D~--~ia~~~a~f~~p  124 (251)
T PLN02600         97 GAALGGGLELALSCDL--RICGEEAVFGLP  124 (251)
T ss_pred             CeecchhHHHHHhCCE--EEeeCCCEEeCc
Confidence            9999999999999994  999999988773

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=95.09  E-value=0.13  Score=46.27  Aligned_cols=48  Identities=8%  Similarity=0.010  Sum_probs=41.1

Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +++.|..++.||.+.+.|.|.+.|..|++++|-  |++.++++|.+-...
T Consensus       103 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~  150 (275)
T PLN02664        103 AITAIEQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVD  150 (275)
T ss_pred             HHHHHHhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHh
Confidence            456677889999999999999999999999994  999999988774443

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=95.06  E-value=0.15  Score=49.13  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             CcEEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccHH------------H----HHH-
Q 026750           97 ERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTPT------------L----AIY-  148 (234)
Q Consensus        97 ~RiIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~ag------------l----aIy-  148 (234)
                      -++|.|+-+     ++.++..++...|..++.++..+  .+.|.+      -|||+.+-            .    ..| 
T Consensus        52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vr--vVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~  129 (407)
T PLN02851         52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIG--FVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYK  129 (407)
T ss_pred             EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHH
Confidence            346778876     78889999999998887544332  233344      45665321            1    122 


Q ss_pred             --HHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          149 --DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       149 --D~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                        ..|..++.||.+.+.|.|.+.|.-|.++|+-  |++.++++|-+=..
T Consensus       130 l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~  176 (407)
T PLN02851        130 FVYLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEV  176 (407)
T ss_pred             HHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchh
Confidence              2345678999999999999999999999973  77777666655333

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=95.02  E-value=0.17  Score=45.04  Aligned_cols=84  Identities=17%  Similarity=0.197  Sum_probs=58.4

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH-------------HHHHHHHHHhcCCCeEEEEcccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP-------------TLAIYDTMQSLKSPVGTHCVGFA  166 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a-------------glaIyD~m~~~~~~V~Tv~~G~A  166 (234)
                      ++.++..++.+.+..++.+++.+-  |.|-+      .|+|+..             ...+++.|..++.||.+.+-|.|
T Consensus        32 l~~~~~~~l~~al~~~~~d~~vr~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  109 (261)
T PRK08138         32 LNMEVRQQLAEHFTELSEDPDIRA--IVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYA  109 (261)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeeE--EEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence            677788888888887764332222  22333      3344321             11245667788999999999999


Q ss_pred             ccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          167 YHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       167 aS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      .+.|.-|++++|-  |++.++++|.+=
T Consensus       110 ~GgG~~lalacD~--ria~~~a~f~~p  134 (261)
T PRK08138        110 LGGGCELAMHADI--IVAGESASFGQP  134 (261)
T ss_pred             EcHHHHHHHhCCE--EEecCCCEeeCc
Confidence            9999999999984  888888777653

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=95.02  E-value=0.15  Score=45.23  Aligned_cols=87  Identities=15%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH------------HHHHHHHHhcCCCeEEEEccccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT------------LAIYDTMQSLKSPVGTHCVGFAY  167 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag------------laIyD~m~~~~~~V~Tv~~G~Aa  167 (234)
                      ++.+..+++.+.+..++.++..+  .|.|-+.      |+++..-            ..++..|..++.||.+.+.|.|.
T Consensus        29 l~~~~~~~L~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~  106 (249)
T PRK07110         29 FSDELCDQLHEAFDTIAQDPRYK--VVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAI  106 (249)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCcee
Confidence            66777788888877776433222  2333343      4543321            24667788899999999999999


Q ss_pred             cHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          168 HLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       168 S~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      ..|..|.+++|-  |++.++++|-+....
T Consensus       107 GgG~~lal~cD~--~ia~~~a~f~~pe~~  133 (249)
T PRK07110        107 GGGLVLGLYADI--VVLSRESVYTANFMK  133 (249)
T ss_pred             chHHHHHHhCCE--EEEeCCCEecCchhc
Confidence            999999999994  999999887664433

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=95.02  E-value=0.19  Score=45.15  Aligned_cols=82  Identities=15%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeC------CCCCccHH----------------------HHHHHHHHhcCC
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYING------PGGDVTPT----------------------LAIYDTMQSLKS  156 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INS------PGG~v~ag----------------------laIyD~m~~~~~  156 (234)
                      ++.++..++.+.+..++.++   ++. |.|.+      .|+|+...                      ..+++.|..++.
T Consensus        34 l~~~~~~~L~~~l~~~~~d~---~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  110 (276)
T PRK05864         34 MAFDVMVPLKEALAEVSYDN---SVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQ  110 (276)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            66677777777777776433   232 23333      33443210                      124456778899


Q ss_pred             CeEEEEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750          157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       157 ~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      ||.+.+.|.|.+.|.-|++++|-  |++.++++|.+
T Consensus       111 PvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~  144 (276)
T PRK05864        111 PVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRA  144 (276)
T ss_pred             CEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecC
Confidence            99999999999999999999994  99998888764

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=95.00  E-value=0.15  Score=46.22  Aligned_cols=86  Identities=7%  Similarity=0.007  Sum_probs=59.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeC--------CCCCccHH-----------------HHHHHHHHhcCCCeEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYING--------PGGDVTPT-----------------LAIYDTMQSLKSPVGT  160 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS--------PGG~v~ag-----------------laIyD~m~~~~~~V~T  160 (234)
                      ++.++..++.+.|..++.++..+-  |.|-+        .|+|+..-                 ..+++.|..++.||.+
T Consensus        35 l~~~~~~eL~~al~~~~~d~~vr~--vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  112 (278)
T PLN03214         35 MTLAMWRSLDDALTALENDPTVRG--VVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC  112 (278)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCceE--EEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            667777888888887775433222  22333        33343210                 0144567788899999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      .+.|.|...|.-|++++|-  |++.++++|-+-..
T Consensus       113 aV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~  145 (278)
T PLN03214        113 AIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEV  145 (278)
T ss_pred             EEcCcccchHHHHHHhCCE--EEecCCCEecCcHH
Confidence            9999999999999999994  99999988776433

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=94.89  E-value=0.2  Score=44.48  Aligned_cols=87  Identities=16%  Similarity=0.233  Sum_probs=61.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a---------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++..++.+.+..++.++..  -.|.|.+.|       +|+..               ...+++.|..++.||.+.+.
T Consensus        28 l~~~~~~~l~~~~~~~~~d~~v--~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  105 (260)
T PRK05809         28 LNSETLKELDTVLDDIENDDNV--YAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN  105 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCc--EEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            5777778888877776643322  234445545       33311               12356678888999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      |.|.+.|.-|++++|-  |++.++++|.+-...
T Consensus       106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~  136 (260)
T PRK05809        106 GFALGGGCELSMACDI--RIASEKAKFGQPEVG  136 (260)
T ss_pred             CeeecHHHHHHHhCCE--EEeeCCCEEeCcccc
Confidence            9999999999999994  999999888775443

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=94.88  E-value=0.17  Score=45.94  Aligned_cols=48  Identities=15%  Similarity=0.020  Sum_probs=41.7

Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +++.|...+.||.+.+.|.|.+.|.-|++++|-  |++.++++|-+....
T Consensus       105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~  152 (296)
T PRK08260        105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGR  152 (296)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhh
Confidence            456677889999999999999999999999994  999999998876554

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=94.77  E-value=0.18  Score=44.85  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=61.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a---------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++..++...+..++.++..  -.|.|.+-|       +|+..               ...+++.|..++.||.+.+.
T Consensus        26 l~~~~~~~l~~al~~~~~d~~v--rvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  103 (258)
T PRK09076         26 WTADSLQALKQLVLELNADKDV--YALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN  103 (258)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCc--eEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            6777888888888777654322  234444444       33321               11245667788999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      |.|.+.|.-|++++|-  |++.++++|-+-...
T Consensus       104 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~  134 (258)
T PRK09076        104 GYAMGGGLECALACDI--RIAEEQAQMALPEAS  134 (258)
T ss_pred             CEEecHHHHHHHhCCE--EEecCCCEeeCcccc
Confidence            9999999999999994  999999888764433

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=94.76  E-value=0.22  Score=44.18  Aligned_cols=83  Identities=17%  Similarity=0.209  Sum_probs=58.9

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccH-------------H-----HHHHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTP-------------T-----LAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~a-------------g-----laIyD~m~~~~~~V~Tv  161 (234)
                      ++.++..++.+.+..++.++ .+  .|.|.+.      |+|+..             .     -.+++.|..++.||.+.
T Consensus        23 l~~~~~~~l~~~l~~~~~d~-v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa   99 (256)
T TIGR02280        23 FTAEMHLELREALERVERDD-AR--ALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA   99 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCC-cE--EEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            67777888888888776433 32  2333333      343321             0     11345677889999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      +.|.|.+.|.-|++++|-  |++.++++|.+-
T Consensus       100 v~G~a~GgG~~lala~D~--ria~~~a~f~~p  129 (256)
T TIGR02280       100 VNGVAAGAGANLALACDI--VLAAESARFIQA  129 (256)
T ss_pred             ECCeeehHHHHHHHhCCE--EEecCCCEEeCh
Confidence            999999999999999994  999999988753

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=94.73  E-value=0.24  Score=44.12  Aligned_cols=47  Identities=21%  Similarity=0.107  Sum_probs=40.4

Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      +++.|..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+=..
T Consensus        84 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~  130 (255)
T PRK08150         84 VFDKIQYGRVPVIAALHGAVVGGGLELASAAHI--RVADESTYFALPEG  130 (255)
T ss_pred             HHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCE--EEEeCCCEEecccc
Confidence            566777889999999999999999999999994  99999988876433

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=94.69  E-value=0.28  Score=43.37  Aligned_cols=86  Identities=20%  Similarity=0.159  Sum_probs=60.5

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccHH---------------HHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTPT---------------LAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~ag---------------laIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++..++.+.+..++.++   ++. +.|.+.|      +|+..-               ...+..|..++.||.+.+.
T Consensus        27 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  103 (249)
T PRK05870         27 VTAEMSAQLRAAVAAAEADP---DVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN  103 (249)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            56778888888888776533   333 3334443      443211               1234456678899999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      |.|.+.|.-|++++|-  |++.++++|.+....
T Consensus       104 G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~  134 (249)
T PRK05870        104 GAAVGAGLNLALAADV--RIAGPKALFDARFQK  134 (249)
T ss_pred             CEeEchhHHHHHhCCE--EEEcCCCEEeCcccc
Confidence            9999999999999994  999999988765443

>PLN02921 naphthoate synthase

Probab=94.64  E-value=0.28  Score=45.76  Aligned_cols=95  Identities=17%  Similarity=0.120  Sum_probs=68.9

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEE-e-------CCCCCccHH----------------HHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI-N-------GPGGDVTPT----------------LAIYD  149 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-N-------SPGG~v~ag----------------laIyD  149 (234)
                      +|.|+.+     ++.++..++.+.+..++.++   +|.+.| -       |.||++..-                ..+++
T Consensus        79 ~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~---~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~  155 (327)
T PLN02921         79 KITINRPERRNAFRPRTVKELQRAFNDARDDS---SVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQI  155 (327)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCC---CceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHH
Confidence            3556654     77888888998888876533   343333 3       344554310                12455


Q ss_pred             HHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       150 ~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|..++.||.+.+.|.|.+.|..|.+++|  -|++.++++|.+..+..|
T Consensus       156 ~l~~~~kPvIAaVnG~a~GGG~~LalacD--~riA~~~A~f~~pe~~~G  202 (327)
T PLN02921        156 QIRRLPKPVIAMVAGYAVGGGHILHMVCD--LTIAADNAVFGQTGPKVG  202 (327)
T ss_pred             HHHhCCCCEEEEECCEEecHHHHHHHhCC--EEEEeCCCEEeCcccccC
Confidence            67788999999999999999999999999  499999999988766544

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=94.63  E-value=0.26  Score=43.65  Aligned_cols=83  Identities=17%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH-------------------HHHHHHHHHhcCCCeEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP-------------------TLAIYDTMQSLKSPVGT  160 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a-------------------glaIyD~m~~~~~~V~T  160 (234)
                      ++.++..++.+.+..++..+..+  .|.|.+.|      +|+..                   ...+++.|..++.||.+
T Consensus        26 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  103 (255)
T PRK07260         26 FNIPMCQEILEALRLAEEDPSVR--FLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM  103 (255)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            56677777777777766433222  23345444      33321                   12344567788999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      .+.|.|...|..|++++|-  |++.++++|.+
T Consensus       104 av~G~a~GgG~~lala~D~--ria~~~a~f~~  133 (255)
T PRK07260        104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQ  133 (255)
T ss_pred             EecCeeehhhHHHHHhCCE--EEEeCCCEEec
Confidence            9999999999999999995  99999998775

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=94.61  E-value=0.23  Score=44.19  Aligned_cols=50  Identities=16%  Similarity=0.130  Sum_probs=42.8

Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +++.|..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+-...-|
T Consensus        89 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  138 (259)
T TIGR01929        89 VQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVG  138 (259)
T ss_pred             HHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCcccccc
Confidence            566778889999999999999999999999994  99999999888655433

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=94.54  E-value=0.27  Score=44.06  Aligned_cols=83  Identities=17%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH-----------------HHHHHHHHhcCCCeEEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT-----------------LAIYDTMQSLKSPVGTHC  162 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag-----------------laIyD~m~~~~~~V~Tv~  162 (234)
                      ++.+...++.+.|..++.++..+  .|.|.+.|      +++..-                 ..++..|..++.||.+.+
T Consensus        36 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  113 (268)
T PRK07327         36 ADARMHRELADIWRDVDRDPDVR--VVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAI  113 (268)
T ss_pred             CCHHHHHHHHHHHHHhhhCCCce--EEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            67778888888888877543222  23334444      443210                 123345667789999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      .|.|.+.|.-|++++|-  |++.++++|-+
T Consensus       114 ~G~a~GgG~~lalacD~--ria~~~a~f~~  141 (268)
T PRK07327        114 HGPAVGAGLVAALLADI--SIAAKDARIID  141 (268)
T ss_pred             cCeeeehhhHHHHhCCE--EEecCCCEEeC
Confidence            99999999999999994  89999888765

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=94.54  E-value=0.23  Score=44.46  Aligned_cols=88  Identities=16%  Similarity=0.219  Sum_probs=62.5

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccH--------------------------HHHHHHHHH
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTP--------------------------TLAIYDTMQ  152 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~a--------------------------glaIyD~m~  152 (234)
                      ++.+...++.+.+..++.++   +|. |.|.+.|      +|+..                          ...+++.|.
T Consensus        30 l~~~~~~~l~~~l~~~~~d~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  106 (272)
T PRK06142         30 MNPAFWSELPEIFRWLDADP---EVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVA  106 (272)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            77888888888888776433   333 3334444      44321                          012445677


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .++.||.+.+.|.|.+.|.-|++++|-  |++.++++|-+....-|
T Consensus       107 ~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  150 (272)
T PRK06142        107 DCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLG  150 (272)
T ss_pred             hCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhC
Confidence            889999999999999999999999995  99999988766544433

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=94.52  E-value=0.2  Score=44.46  Aligned_cols=84  Identities=14%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH--------------H-----HHHHHHHHhcCCCeE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP--------------T-----LAIYDTMQSLKSPVG  159 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a--------------g-----laIyD~m~~~~~~V~  159 (234)
                      ++.++..++.+.+..++.++..+  .|.|-+.|       +|+..              .     ..+++.|..++.||.
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  104 (260)
T PRK05980         27 LNYALIDRLLARLDAIEVDESVR--AVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI  104 (260)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcE--EEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            67777888888887776433222  23334433       33321              0     124556777899999


Q ss_pred             EEEccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       160 Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      +.+.|.|.+.|.-|++++|-  |++.++++|.+=
T Consensus       105 aav~G~a~GgG~~lal~cD~--ria~~~a~f~~p  136 (260)
T PRK05980        105 AAVNGLAFGGGCEITEAVHL--AIASERALFAKP  136 (260)
T ss_pred             EEEcCEEEhhhhHHhHhCCE--EEecCCCEecCc
Confidence            99999999999999999994  899888887663

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=94.48  E-value=0.26  Score=43.79  Aligned_cols=87  Identities=14%  Similarity=0.186  Sum_probs=62.2

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCCC-------CccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG-------DVTP---------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG-------~v~a---------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++..++.+.+..++.++..+  .|.|.+.|+       |+..               ...+++.|..++.||.+.+.
T Consensus        28 l~~~~~~~l~~al~~~~~d~~v~--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  105 (260)
T PRK07657         28 LSLALLEELQNILTQINEEANVR--VVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN  105 (260)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeE--EEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence            67788888888888776533222  344455443       3221               01245667788999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      |.|...|.-|.+++|-  |++.++++|.+-...
T Consensus       106 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~  136 (260)
T PRK07657        106 GIALGGGLELALACDF--RIAAESASLGLTETT  136 (260)
T ss_pred             CEeechHHHHHHhCCE--EEeeCCCEEcCchhc
Confidence            9999999999999994  999999888765444

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=94.40  E-value=0.4  Score=42.58  Aligned_cols=83  Identities=13%  Similarity=0.154  Sum_probs=58.9

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccHH-------------------HHHHHHHHhcCCCeEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPT-------------------LAIYDTMQSLKSPVGT  160 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~ag-------------------laIyD~m~~~~~~V~T  160 (234)
                      ++.++..++.+.+..++ ++..+-  |.|-      |.|+|+..-                   ..+++.|..++.||.+
T Consensus        28 l~~~~~~~l~~~~~~~~-d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  104 (262)
T PRK08140         28 FTREMHRELREALDQVE-DDGARA--LLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIA  104 (262)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCceE--EEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            56777788888888776 433322  2222      333443210                   0145567788999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      .+-|.|...|.-|++++|  -|++.++++|.+-
T Consensus       105 av~G~a~GgG~~lalacD--~ria~~~a~f~~p  135 (262)
T PRK08140        105 AVNGVAAGAGANLALACD--IVLAARSASFIQA  135 (262)
T ss_pred             EECCeeehhHHHHHHhCC--EEEecCCCEEecc
Confidence            999999999999999999  4999999988753

>PLN02888 enoyl-CoA hydratase

Probab=94.38  E-value=0.33  Score=43.54  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=60.1

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH------------HHHHHHHHhcCCCeEEEEccccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT------------LAIYDTMQSLKSPVGTHCVGFAY  167 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag------------laIyD~m~~~~~~V~Tv~~G~Aa  167 (234)
                      ++.+...++.+.+..++.++..+  .+.|.+.|      +|+...            ..++..|..++.||.+.+.|.|.
T Consensus        34 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~  111 (265)
T PLN02888         34 LTRPMMVELAAAFKRLDEDDSVK--VIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAI  111 (265)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeee
Confidence            67778888888888776533222  23344444      444311            12445677889999999999999


Q ss_pred             cHHHHHHcCCCCCCEEeccCceEeee
Q 026750          168 HLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       168 S~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      +.|..|++++|-  |++.++++|.+=
T Consensus       112 GgG~~lal~cD~--ria~~~a~f~~p  135 (265)
T PLN02888        112 TAGFEIALACDI--LVASRGAKFIDT  135 (265)
T ss_pred             chHHHHHHhCCE--EEecCCCEecCc
Confidence            999999999994  999998887663

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=94.37  E-value=0.34  Score=42.99  Aligned_cols=87  Identities=13%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH----------------HHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT----------------LAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag----------------laIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++..++.+.+..++.++..+  .|.|.+.      |+|+..-                ..+++.|..++.||.+.+.
T Consensus        25 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~  102 (249)
T PRK07938         25 LPSAGWFALADAITAAGADPDTR--VVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH  102 (249)
T ss_pred             CCHHHHHHHHHHHHHhhcCCCeE--EEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence            66777788888887776443222  2333433      4554320                1245567788999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      |.|.+.|.-|+++||-  |++.++++|.+=...
T Consensus       103 G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~  133 (249)
T PRK07938        103 GFCLGGGIGLVGNADV--IVASDDATFGLPEVD  133 (249)
T ss_pred             CEEeehHHHHHHhCCE--EEEeCCCEeeCccce
Confidence            9999999999999994  999999987764433

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=94.36  E-value=0.29  Score=46.70  Aligned_cols=91  Identities=15%  Similarity=0.210  Sum_probs=63.5

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHHH-------------------HHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPTL-------------------AIY  148 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~agl-------------------aIy  148 (234)
                      +|.|+.+     ++.++...+.+.|..++.++..+  .|.|-+.      |||+..-.                   .+.
T Consensus        21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~--~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~   98 (381)
T PLN02988         21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVK--LVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLN   98 (381)
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCee--EEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence            4556655     67788889999998886543222  2334443      56654310                   122


Q ss_pred             HHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       149 D~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      ..|..++.||.+.+.|.|.+.|.-|.++|+-  |++.++++|-+=
T Consensus        99 ~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mP  141 (381)
T PLN02988         99 YVMATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMP  141 (381)
T ss_pred             HHHHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeCh
Confidence            3566789999999999999999999999984  888888876653

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=94.34  E-value=0.25  Score=43.68  Aligned_cols=85  Identities=15%  Similarity=0.218  Sum_probs=59.8

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH----------------HHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP----------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a----------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.+...++.+.+..++.++..+  .|.|.+      .|+|+..                ...+++.|..++.||.+.+.
T Consensus        25 l~~~~~~~l~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~  102 (257)
T PRK07658         25 LSSQVLHELSELLDQVEKDDNVR--VVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH  102 (257)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence            66777778887777776433222  233343      3454321                12356677788999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDS  194 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHq  194 (234)
                      |.|.+.|.-|++++|  -|++.++++|-+-.
T Consensus       103 G~a~GgG~~lalacD--~ria~~~a~f~~pe  131 (257)
T PRK07658        103 GAALGGGLELAMSCH--IRFATESAKLGLPE  131 (257)
T ss_pred             CeeeeHHHHHHHhCC--EEEecCCCcccCcc
Confidence            999999999999998  49999888876644

>PRK08321 naphthoate synthase; Validated

Probab=94.33  E-value=0.37  Score=44.11  Aligned_cols=94  Identities=14%  Similarity=0.051  Sum_probs=64.0

Q ss_pred             EEECcc-----cChhhHHHHHHHHhcccccCCCCceEEE-----------EeCCCCCccH--------------------
Q 026750          100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY-----------INGPGGDVTP--------------------  143 (234)
Q Consensus       100 IfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~-----------INSPGG~v~a--------------------  143 (234)
                      |-|+.+     ++.++..++.+.|..++.++..+-|.|.           .=|.|+|+..                    
T Consensus        38 itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  117 (302)
T PRK08321         38 IAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPA  117 (302)
T ss_pred             EEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhh
Confidence            445544     6777778888888877654433323222           1255666431                    


Q ss_pred             ---HH---HHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEec-cCceEeeeCC
Q 026750          144 ---TL---AIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAM-PLSRIALDSP  195 (234)
Q Consensus       144 ---gl---aIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~-PnAriMIHqP  195 (234)
                         ..   .+++.|..++.||.+.+.|.|...|.-|++++|-  |++. ++++|.+=..
T Consensus       118 ~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~  174 (302)
T PRK08321        118 RAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDA  174 (302)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCcc
Confidence               01   2345677888999999999999999999999994  9998 5888876433

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=94.21  E-value=0.28  Score=44.60  Aligned_cols=51  Identities=10%  Similarity=-0.118  Sum_probs=41.3

Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCcc
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA  199 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~  199 (234)
                      ++..|..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+=...-|.
T Consensus       110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl  160 (288)
T PRK08290        110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGI  160 (288)
T ss_pred             HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCc
Confidence            345577889999999999999999999999994  999999988753333333

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=94.20  E-value=0.42  Score=42.56  Aligned_cols=48  Identities=23%  Similarity=0.040  Sum_probs=40.8

Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +++.|..++.||.+.+.|.|...|.-|++++|  -|++.++++|.+-...
T Consensus        95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~  142 (266)
T PRK09245         95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCD--IRIASETARFAESFVK  142 (266)
T ss_pred             HHHHHHcCCCCEEEEECCEeecHHHHHHHhCC--EEEecCCCEEcccccc
Confidence            44567788899999999999999999999999  4999999988765444

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=94.18  E-value=0.45  Score=42.25  Aligned_cols=89  Identities=19%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH------------------HHHHHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP------------------TLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a------------------glaIyD~m~~~~~~V~Tv  161 (234)
                      ++.+...++.+.+..++.++..  =.|.|.+.|      +|+..                  ...++..|..++.||.+.
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~v--r~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  105 (262)
T PRK05995         28 FNETVIAELTAAFRALDADDSV--RAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIAR  105 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCe--EEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEE
Confidence            6667777777777776643322  123344444      33321                  012455677889999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.|.|.+.|.-|++++|-  |++.++++|.+-...-|
T Consensus       106 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  140 (262)
T PRK05995        106 VHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLG  140 (262)
T ss_pred             ECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccc
Confidence            999999999999999994  99999998877544433

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=94.12  E-value=0.33  Score=43.44  Aligned_cols=84  Identities=14%  Similarity=0.194  Sum_probs=57.0

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH------------------HHHHHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP------------------TLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a------------------glaIyD~m~~~~~~V~Tv  161 (234)
                      ++.++..++.+.+..++.++..+  .|.|-+      .|+|+..                  ...++..|..++.||.+.
T Consensus        30 l~~~~~~el~~al~~~~~d~~vr--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  107 (265)
T PRK05674         30 FNAQMIRELILALDQVQSDASLR--FLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAV  107 (265)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCee--EEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEE
Confidence            56667777777777666433222  122333      3344321                  012445567788999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      +-|.|.+.|.-|++++|-  |++.++++|.+=
T Consensus       108 V~G~a~GgG~~lal~~D~--~ia~~~a~f~~p  137 (265)
T PRK05674        108 VQGAAFGGALGLISCCDM--AIGADDAQFCLS  137 (265)
T ss_pred             EcCEEEechhhHhhhcCE--EEEeCCCEEeCc
Confidence            999999999999999994  899999888773

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=94.09  E-value=0.34  Score=43.65  Aligned_cols=85  Identities=13%  Similarity=0.210  Sum_probs=59.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH-------------------HHHHHHHHHhcCCCeEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP-------------------TLAIYDTMQSLKSPVGT  160 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a-------------------glaIyD~m~~~~~~V~T  160 (234)
                      ++.++..++.+.+..++.++..+  .|.|.+.|      +|+..                   ...+++.|..++.||.+
T Consensus        32 l~~~m~~el~~al~~~~~d~~vr--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  109 (275)
T PRK09120         32 MSPTLNREMIDVLDALEFDDDAG--VLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIA  109 (275)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            67777777887777776433222  23334433      44321                   01245567788999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDS  194 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHq  194 (234)
                      .+.|.|...|.-|++++|-  |++.++++|.+=.
T Consensus       110 av~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe  141 (275)
T PRK09120        110 MVNGWCFGGGFSPLVACDL--AIAADEAQFGLSE  141 (275)
T ss_pred             EEcCEEechhHHHHHhCCE--EEEeCCcEecCCc
Confidence            9999999999999999994  9999988887633

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=93.93  E-value=0.47  Score=42.32  Aligned_cols=83  Identities=13%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC-------CCCccH----------------HHHHHHHHHhcCCCeEEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-------GGDVTP----------------TLAIYDTMQSLKSPVGTHC  162 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-------GG~v~a----------------glaIyD~m~~~~~~V~Tv~  162 (234)
                      ++.++..++.+.+..++.++..+  .|.|.+.       |+|+..                ...+++.|..++.||.+.+
T Consensus        32 l~~~~~~~l~~~l~~~~~d~~v~--~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  109 (262)
T PRK06144         32 MTWAMYEGLAEICEAIAADPSIR--AVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAI  109 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            56777888888888776433222  2333443       344321                0124455677889999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      -|.|.+.|.-|++++|-  |++.++++|-+
T Consensus       110 ~G~a~GgG~~lala~D~--~ia~~~a~f~~  137 (262)
T PRK06144        110 AGACVGGGAAIAAACDL--RIATPSARFGF  137 (262)
T ss_pred             CCeeeehHHHHHHhCCE--EEecCCCEeec
Confidence            99999999999999994  99999998865

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=93.90  E-value=0.31  Score=44.47  Aligned_cols=44  Identities=9%  Similarity=0.044  Sum_probs=38.3

Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      ++..|..++.||.+.+.|.|.+.|.-|+++||-  |++.++++|-+
T Consensus       119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~  162 (302)
T PRK08272        119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGY  162 (302)
T ss_pred             HHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecC
Confidence            355667888999999999999999999999994  99999987754

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=93.90  E-value=0.34  Score=47.90  Aligned_cols=94  Identities=20%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCC----------CccHHHHHHHHHHhcCCCeEEEEccccccHHHH
Q 026750          103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG----------DVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGF  172 (234)
Q Consensus       103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG----------~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~asl  172 (234)
                      +|.++++.+..+...+..-+.  ..-||..++||||=          .+..+-.+++.+.....|..+++.|-+++.|.+
T Consensus       328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~  405 (512)
T TIGR01117       328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL  405 (512)
T ss_pred             cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence            366777776666555543332  24689999999995          345666677777777899999999999998776


Q ss_pred             HHcCC--CCCCEEeccCceEeeeCCCCc
Q 026750          173 LLAGG--EKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       173 IlaaG--~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+++.  .....++.|++++.+=.|.+.
T Consensus       406 am~~~~~~~d~~~a~p~a~~~v~~pe~a  433 (512)
T TIGR01117       406 AMCSKHLGADQVYAWPTAEIAVMGPAGA  433 (512)
T ss_pred             HhccccCCCCEEEEcCCCeEeecCHHHH
Confidence            66531  122589999999999988764

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=93.87  E-value=0.48  Score=42.59  Aligned_cols=87  Identities=15%  Similarity=0.177  Sum_probs=60.1

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeC-------CCCCccH----------------HHHHHHHHHhcCCCeEEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYING-------PGGDVTP----------------TLAIYDTMQSLKSPVGTHC  162 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS-------PGG~v~a----------------glaIyD~m~~~~~~V~Tv~  162 (234)
                      ++.++..++.+.|..++.++..+-  |.|-+       .|+|+..                ...+++.|..++.||.+.+
T Consensus        37 l~~~~~~~l~~al~~~~~d~~vr~--vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  114 (273)
T PRK07396         37 FRPKTVKEMIDAFADARDDDNIGV--IILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMV  114 (273)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceE--EEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEE
Confidence            567777777777777664332222  22222       3333321                1124566778899999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .|.|...|.-|++++|  -|++.++++|-+=.+.
T Consensus       115 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~  146 (273)
T PRK07396        115 AGYAIGGGHVLHLVCD--LTIAADNAIFGQTGPK  146 (273)
T ss_pred             CCEEehHHHHHHHhCC--EEEeeCCcEEeccccc
Confidence            9999999999999999  4999999998875444

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=93.81  E-value=0.43  Score=45.90  Aligned_cols=94  Identities=10%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccHH--------------H--H---HH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPT--------------L--A---IY  148 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~ag--------------l--a---Iy  148 (234)
                      +|-|+-+     ++.++..++.+.|..++.++..+  .+.|-      |-|||+.+-              +  .   +.
T Consensus        49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vr--vVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~  126 (401)
T PLN02157         49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIG--FVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFI  126 (401)
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCe--EEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHH
Confidence            5667766     78888899999888877543322  23333      456766421              0  1   22


Q ss_pred             HHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       149 D~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      ..|..++.||.+.+.|.|.+.|.-|.++|+-  |++.++++|-+=...
T Consensus       127 ~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~  172 (401)
T PLN02157        127 YLLGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETI  172 (401)
T ss_pred             HHHHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhh
Confidence            3477889999999999999999999999984  888888877664433

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=93.79  E-value=0.32  Score=44.51  Aligned_cols=48  Identities=13%  Similarity=-0.023  Sum_probs=41.5

Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .+..|..++.||.+.+.|.|.+.|.-|.++||-  |++.++++|-+-...
T Consensus       104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~  151 (298)
T PRK12478        104 KFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSR  151 (298)
T ss_pred             HHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccc
Confidence            345677889999999999999999999999994  999999998876554

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=93.75  E-value=0.49  Score=42.36  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             EEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCccH----------H-------HHHHHH
Q 026750          100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP----------T-------LAIYDT  150 (234)
Q Consensus       100 IfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v~a----------g-------laIyD~  150 (234)
                      |.|+.+     ++.++..++.+.+..++.+++.+  .|.|.+.|       +++..          .       ..+++.
T Consensus        24 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (269)
T PRK06127         24 ITFNNPARHNAMSLDMWEALPQALAAAEDDDAIR--VVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAA  101 (269)
T ss_pred             EEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcE--EEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            455544     67778888888888776543222  23344443       33321          0       124456


Q ss_pred             HHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       151 m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+.....|
T Consensus       102 i~~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~G  147 (269)
T PRK06127        102 LADYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLG  147 (269)
T ss_pred             HHhCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhC
Confidence            77889999999999999999999999994  99999999888655433

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=93.66  E-value=0.37  Score=44.99  Aligned_cols=85  Identities=19%  Similarity=0.217  Sum_probs=58.8

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC-------CCccH------------H-------HHHHHHHHhcCCCe
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG-------GDVTP------------T-------LAIYDTMQSLKSPV  158 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG-------G~v~a------------g-------laIyD~m~~~~~~V  158 (234)
                      ++.++..++.+.+..++.++   +|. +.|.+.|       +++..            .       ..++..|..++.||
T Consensus        27 l~~~m~~~L~~~l~~~~~d~---~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  103 (342)
T PRK05617         27 LSLEMIRAIDAALDAWEDDD---AVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPY  103 (342)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence            66777777777777666432   333 3344444       33221            0       12445677888999


Q ss_pred             EEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       159 ~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      .+.+-|.|.+.|.-|.+++|  -|++.++++|.+=..
T Consensus       104 IAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe~  138 (342)
T PRK05617        104 IALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPET  138 (342)
T ss_pred             EEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeCCcc
Confidence            99999999999999999999  499998888876443

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=93.66  E-value=0.59  Score=41.56  Aligned_cols=89  Identities=13%  Similarity=0.073  Sum_probs=58.9

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC-------CCCccHH------------HHHHHHHHhcCCCeEEEEcccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-------GGDVTPT------------LAIYDTMQSLKSPVGTHCVGFA  166 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-------GG~v~ag------------laIyD~m~~~~~~V~Tv~~G~A  166 (234)
                      ++.++..++.+.+..++.++..+-  |.|-+.       |+|+...            +.-+..+..++.||.+.+.|.|
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a  105 (259)
T PRK06494         28 LHLDAHFELEEVFDDFAADPEQWV--AIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVA  105 (259)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcEE--EEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEE
Confidence            667777888888877765433222  233333       3444221            1111223456789999999999


Q ss_pred             ccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       167 aS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+.|.-|.+++|-  |++.++++|.+-...-|
T Consensus       106 ~GgG~~lalacD~--ria~~~a~f~~pe~~~G  135 (259)
T PRK06494        106 MGGGFELALACDL--IVAAENATFALPEPRVG  135 (259)
T ss_pred             ecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence            9999999999994  99999998877554433

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=93.59  E-value=0.5  Score=41.90  Aligned_cols=84  Identities=13%  Similarity=0.212  Sum_probs=57.1

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH-------------HHHHHHHHHhcCCCeEEEEcccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP-------------TLAIYDTMQSLKSPVGTHCVGFA  166 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a-------------glaIyD~m~~~~~~V~Tv~~G~A  166 (234)
                      ++.++..++.+.+..++.++..+  .|.|-+.|      +|+..             ...+++.|..++.||.+.+.|.|
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a  105 (257)
T PRK05862         28 LNDALMDELGAALAAFDADEGIG--AIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYA  105 (257)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCee--EEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence            56667777777777666433222  22223333      33321             12345677888999999999999


Q ss_pred             ccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          167 YHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       167 aS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      ...|.-|++++|-  |++.++++|-+=
T Consensus       106 ~GgG~~lalacD~--~ia~~~a~f~~p  130 (257)
T PRK05862        106 LGGGCELAMMCDI--IIAADTAKFGQP  130 (257)
T ss_pred             eHHHHHHHHHCCE--EEEeCCCEEeCc
Confidence            9999999999994  888888877653

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=93.48  E-value=0.11  Score=51.01  Aligned_cols=93  Identities=19%  Similarity=0.226  Sum_probs=66.5

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL  173 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI  173 (234)
                      |.|+.+.+.....-+...+..  .-||....|+||          |-+..+-.+.+++...+.|+.|++.|-+.+.|.+-
T Consensus       308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a  385 (493)
T PF01039_consen  308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA  385 (493)
T ss_dssp             GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence            567777666555544444432  358999999999          66788899999999999999999999999988877


Q ss_pred             HcCCC--CCCEEeccCceEeeeCCCCc
Q 026750          174 LAGGE--KGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       174 laaG~--kgkR~a~PnAriMIHqP~~~  198 (234)
                      +++..  ....++.|+|++-+-.|.+.
T Consensus       386 m~~~~~~~~~~~Awp~a~~~vm~~e~a  412 (493)
T PF01039_consen  386 MCGRGYGPDFVFAWPTAEIGVMGPEGA  412 (493)
T ss_dssp             TTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred             hcccccchhhhhhhhcceeeecChhhh
Confidence            77651  22479999999999888765

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=93.45  E-value=0.71  Score=41.00  Aligned_cols=50  Identities=10%  Similarity=-0.065  Sum_probs=42.0

Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ++..|..++.||.+.+.|.|...|..|++++|  -|++.++++|-+....-|
T Consensus        88 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G  137 (255)
T PRK07112         88 LWHRLATGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPFSLSELLFG  137 (255)
T ss_pred             HHHHHHcCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEEeCchhhhc
Confidence            45567778899999999999999999999999  499999999877655434

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=93.39  E-value=0.56  Score=41.67  Aligned_cols=84  Identities=18%  Similarity=0.139  Sum_probs=56.9

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCCC------CccH------------------HHHHHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG------DVTP------------------TLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG------~v~a------------------glaIyD~m~~~~~~V~Tv  161 (234)
                      ++.+...++...+..++.+++.  -.+.|.+.|+      |+..                  ...++..|..++.||.+.
T Consensus        30 l~~~~~~el~~~l~~~~~d~~v--r~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  107 (260)
T PRK07827         30 LSARLVAQLHDGLRAAAADPAV--RAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA  107 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCe--eEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            5667777777777766543221  2233345443      3211                  012445566778999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      +.|.|.+.|.-|+++||-  |++.+.++|-+=
T Consensus       108 v~G~a~GgG~~lalacD~--ria~~~a~f~~p  137 (260)
T PRK07827        108 IDGHVRAGGFGLVGACDI--VVAGPESTFALT  137 (260)
T ss_pred             EcCeeecchhhHHHhCCE--EEEcCCCEEeCc
Confidence            999999999999999994  899988877663

>PRK08788 enoyl-CoA hydratase; Validated

Probab=93.19  E-value=0.35  Score=44.28  Aligned_cols=85  Identities=14%  Similarity=0.022  Sum_probs=56.4

Q ss_pred             cChhhHHHHHHHHhccccc--CCCCceE-EEEeCC-------CCCccHH----------------HHHHHHHH------h
Q 026750          106 IDEEFSNQILATMLYLDSV--DDSKRVY-MYINGP-------GGDVTPT----------------LAIYDTMQ------S  153 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~--~~~k~I~-L~INSP-------GG~v~ag----------------laIyD~m~------~  153 (234)
                      ++.+...++.+.+..++..  ++..+|. |.|-+.       |+|+...                ..+++.+.      .
T Consensus        40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  119 (287)
T PRK08788         40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG  119 (287)
T ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence            6667778888888877640  0012343 334444       3333210                12344333      5


Q ss_pred             cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEee
Q 026750          154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      .+.||.+.+.|.|.++|.-|++++|-  |++.++++|-+
T Consensus       120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~  156 (287)
T PRK08788        120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGF  156 (287)
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeC
Confidence            67899999999999999999999994  99999987665

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=93.09  E-value=0.63  Score=44.35  Aligned_cols=88  Identities=13%  Similarity=0.115  Sum_probs=63.8

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC-------CCccH------------------HHHHHHHHHhcCCCeE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG-------GDVTP------------------TLAIYDTMQSLKSPVG  159 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG-------G~v~a------------------glaIyD~m~~~~~~V~  159 (234)
                      ++.++..++...+..++.++   +|. +.|-+-|       +++.+                  ...+++.|..++.||.
T Consensus        52 ls~~ml~eL~~al~~~~~D~---dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI  128 (360)
T TIGR03200        52 YTTDMVKAIILAFRRASSDR---DVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI  128 (360)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            78888889999888877533   233 2233333       43321                  1135566778899999


Q ss_pred             EEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       160 Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.+-|.|.+.|.-|.++||-  |++.++++|-+-.+.-|
T Consensus       129 AAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlG  165 (360)
T TIGR03200       129 CRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHG  165 (360)
T ss_pred             EEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccC
Confidence            99999999999999999994  99999998887555544

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=93.07  E-value=0.83  Score=39.82  Aligned_cols=83  Identities=22%  Similarity=0.293  Sum_probs=58.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCcc--------------HHHHHHHHHHhcCCCeEEEEccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVT--------------PTLAIYDTMQSLKSPVGTHCVGF  165 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~--------------aglaIyD~m~~~~~~V~Tv~~G~  165 (234)
                      ++.++.+++.+.+..++  +.. . .|.|.+.|      +|+.              ....++..|...+.||.+.+.|.
T Consensus        26 l~~~~~~~l~~~l~~~~--~~~-~-vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~  101 (229)
T PRK06213         26 LSPAMIDALNAALDQAE--DDR-A-VVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH  101 (229)
T ss_pred             CCHHHHHHHHHHHHHhh--ccC-c-EEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence            67777788888877765  222 2 24445444      3321              11234456667889999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccC-ceEeeeC
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPL-SRIALDS  194 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~Pn-AriMIHq  194 (234)
                      |.+.|..|++++|-  |++.++ ++|.+-.
T Consensus       102 a~GgG~~lal~~D~--rva~~~~a~f~~pe  129 (229)
T PRK06213        102 AIAKGAFLLLSADY--RIGVHGPFKIGLNE  129 (229)
T ss_pred             eeHHHHHHHHhCCe--eeEecCCcEEECch
Confidence            99999999999994  999998 8876643

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=92.90  E-value=0.54  Score=41.66  Aligned_cols=88  Identities=14%  Similarity=0.117  Sum_probs=59.2

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccH---------------HHH-HHHHHHhcCCCeEEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTP---------------TLA-IYDTMQSLKSPVGTHC  162 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~a---------------gla-IyD~m~~~~~~V~Tv~  162 (234)
                      ++.++.+++.+.+..++.++   ++. |.|-+.|      +|+..               ... +...|+.++.||.+.+
T Consensus        23 l~~~~~~~l~~~l~~~~~d~---~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav   99 (255)
T PRK06563         23 FDSAMLDDLALALGEYEADD---ELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAV   99 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEE
Confidence            56677777777777665432   232 3333333      33321               011 1224667889999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|.|.+.|..|++++|-  |++.++++|-+....-|
T Consensus       100 ~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G  133 (255)
T PRK06563        100 QGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRG  133 (255)
T ss_pred             cCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcC
Confidence            99999999999999994  99999998877554433

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=92.89  E-value=1.1  Score=39.70  Aligned_cols=87  Identities=13%  Similarity=0.076  Sum_probs=56.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe-----CCCCCccH-----------------HHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP-----------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-----SPGG~v~a-----------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.+...++...+..++.++....+.|.=.     |.|+|+..                 ...+++.|..++.||.+.+.
T Consensus        23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~  102 (239)
T PLN02267         23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT  102 (239)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            777777888888877764332122222212     23444321                 01144557778899999999


Q ss_pred             cccccHHHHHHcCCCCCCEEecc-CceEeeeC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMP-LSRIALDS  194 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~P-nAriMIHq  194 (234)
                      |.|...|..|++++|-  |++.+ .++|.+-.
T Consensus       103 G~a~GgG~~lalacD~--ria~~~~a~f~~pe  132 (239)
T PLN02267        103 GHASAAGFILALSHDY--VLMRKDRGVLYMSE  132 (239)
T ss_pred             CcchHHHHHHHHHCCE--EEecCCCCeEeccc
Confidence            9999999999999984  88874 45665533

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=92.83  E-value=0.54  Score=44.61  Aligned_cols=95  Identities=17%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEE-EEeCCC------CCccHH----------H-------HHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYM-YINGPG------GDVTPT----------L-------AIYD  149 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L-~INSPG------G~v~ag----------l-------aIyD  149 (234)
                      +|.|+.+     ++.++..++...|..++.++   +|.+ .|.+.|      ||+..-          .       .+..
T Consensus        23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~---~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~   99 (379)
T PLN02874         23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDD---SVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCY   99 (379)
T ss_pred             EEEECCCccccCCCHHHHHHHHHHHHHHhhCC---CeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            4566655     67788888888888876533   3443 334443      443211          0       1123


Q ss_pred             HHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       150 ~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|..++.||.+.+.|.|.+.|.-|++++|-  |++.++++|.+=...-|
T Consensus       100 ~i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iG  146 (379)
T PLN02874        100 HIHTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVG  146 (379)
T ss_pred             HHHhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccC
Confidence            466788999999999999999999999994  99999988776544433

>PRK08139 enoyl-CoA hydratase; Validated

Probab=92.78  E-value=0.64  Score=41.61  Aligned_cols=88  Identities=17%  Similarity=0.173  Sum_probs=61.8

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccH---------H-------HHHHHHHHhcCCCeEEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTP---------T-------LAIYDTMQSLKSPVGTHC  162 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~a---------g-------laIyD~m~~~~~~V~Tv~  162 (234)
                      ++.++..++.+.+..++.++   ++. |.|.+.|      +|+..         .       ..+++.|..++.||.+.+
T Consensus        35 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  111 (266)
T PRK08139         35 LSEAMLAALQAALDAIAADP---SVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARV  111 (266)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67778888888887776432   233 3334444      44321         0       124556778899999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|.|...|.-|++++|  -|++.++++|-+-...-|
T Consensus       112 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  145 (266)
T PRK08139        112 HGIATAAGCQLVASCD--LAVAADTARFAVPGVNIG  145 (266)
T ss_pred             CceeeHHHHHHHHhCC--EEEEeCCCEEeCcccCcC
Confidence            9999999999999999  499999998876554444

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=92.72  E-value=0.96  Score=40.24  Aligned_cols=85  Identities=16%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeCCC------CCccHH----------------HHHHHHHHhcCCCeEEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPG------GDVTPT----------------LAIYDTMQSLKSPVGTHC  162 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPG------G~v~ag----------------laIyD~m~~~~~~V~Tv~  162 (234)
                      ++.++..++.+.+..++  ++  ++. |.|.+.|      +|+..-                ..++..|..++.||.+.+
T Consensus        30 l~~~~~~~l~~~l~~~~--d~--~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav  105 (260)
T PRK07659         30 LDEPMLKELLQALKEVA--ES--SAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI  105 (260)
T ss_pred             CCHHHHHHHHHHHHHhc--CC--CeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            67788888888888773  22  233 4444444      443220                113344566789999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .|.|.+.|.-|++++|-  |++.++++|-+....
T Consensus       106 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  137 (260)
T PRK07659        106 HGPAAGLGLSIALTADY--VIADISAKLAMNFIG  137 (260)
T ss_pred             cCceecHHHHHHHhCCE--EEEcCCCEEcCchhh
Confidence            99999999999999994  999999987765543

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=92.34  E-value=1.1  Score=45.07  Aligned_cols=93  Identities=15%  Similarity=0.021  Sum_probs=65.3

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCCC----------CccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG----------DVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL  173 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG----------~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI  173 (234)
                      |.++.+.+.....-+..-+. . .=|+..++|+||-          .+..+-.+.+++.....|..|+..|-|++.|.+-
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~-~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a  457 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-R-GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG  457 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-c-CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence            45776655544333332222 2 3589999999994          4455566777777888999999999999999988


Q ss_pred             HcCC--CCCCEEeccCceEeeeCCCCc
Q 026750          174 LAGG--EKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       174 laaG--~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +++.  ...-.++.|+|++-+=.|.+.
T Consensus       458 M~g~~~~~d~~~awp~A~i~vmg~e~a  484 (569)
T PLN02820        458 MCGRAYSPNFLFMWPNARIGVMGGAQA  484 (569)
T ss_pred             hcCcCCCCCEEEECCCCeEEecCHHHH
Confidence            8743  233578889999888777654

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=92.23  E-value=0.62  Score=41.25  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEE-eC------CCCCccHHH----------------HHHHHHHhcCCCeEEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYI-NG------PGGDVTPTL----------------AIYDTMQSLKSPVGTH  161 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-NS------PGG~v~agl----------------aIyD~m~~~~~~V~Tv  161 (234)
                      .++.++..++.+.+..++.++   ++.+.| -+      -|+|+..-.                .+...|..++.||.+.
T Consensus        28 al~~~~~~~l~~al~~~~~d~---~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  104 (257)
T COG1024          28 ALNLEMLDELAEALDEAEADP---DVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAA  104 (257)
T ss_pred             CCCHHHHHHHHHHHHHHhhCC---CeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEE
Confidence            577888888888888887543   233322 22      344544311                2566888889999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.|.|...|.-|++++|-  |++.++++|-+....-|
T Consensus       105 v~G~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iG  139 (257)
T COG1024         105 VNGYALGGGLELALACDI--RIAAEDAKFGLPEVNLG  139 (257)
T ss_pred             EcceEeechhhhhhcCCe--EEecCCcEecCcccccc
Confidence            999999999999999994  99999999999877644

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=91.59  E-value=1.2  Score=39.57  Aligned_cols=84  Identities=15%  Similarity=0.072  Sum_probs=55.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccHHH-------H------HHHHHHhcCCCeEEEEcccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPTL-------A------IYDTMQSLKSPVGTHCVGFA  166 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~agl-------a------IyD~m~~~~~~V~Tv~~G~A  166 (234)
                      ++.++..++.+.|..++.++..+  -|.|.      |.|+|+..-.       .      ....+..++.||.+.+.|.|
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~vr--~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a  104 (254)
T PRK08259         27 VDGPTAAALADAFRAFDADDAAS--VAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYA  104 (254)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEE
Confidence            56777777888877776433222  22333      3344443210       0      01112356789999999999


Q ss_pred             ccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          167 YHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       167 aS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      ...|.-|+++||-  |++.++++|-+-
T Consensus       105 ~GgG~~lalacD~--~ia~~~a~f~~p  129 (254)
T PRK08259        105 VAGGLELALWCDL--RVAEEDAVFGVF  129 (254)
T ss_pred             EhHHHHHHHhCCE--EEecCCCEecCc
Confidence            9999999999994  999999987653

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=91.13  E-value=1.2  Score=39.55  Aligned_cols=87  Identities=17%  Similarity=0.194  Sum_probs=57.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHHH---------------H-H--HHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPTL---------------A-I--YDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~agl---------------a-I--yD~m~~~~~~V~Tv  161 (234)
                      ++.++..++.+.+..++.++..+  .|.|.+.|      +|+..-.               . +  ...+..++.||.+.
T Consensus        29 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa  106 (263)
T PRK07799         29 LSTEMLRIMVDAWDRVDNDPDIR--SCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAA  106 (263)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEE
Confidence            66777777877777776443222  23334333      4332100               0 1  11134678999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +.|.|.+.|.-|++++|-  |++.++++|-+-...
T Consensus       107 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~  139 (263)
T PRK07799        107 VEGPAIAGGTEILQGTDI--RVAGESAKFGISEAK  139 (263)
T ss_pred             ECCeEeccHHHHHHhCCE--EEecCCCEecCcccc
Confidence            999999999999999994  999999987764443

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=91.02  E-value=0.71  Score=42.68  Aligned_cols=90  Identities=18%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHH-------------------HHHHHHHHhcCCCeEEEEccc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT-------------------LAIYDTMQSLKSPVGTHCVGF  165 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ag-------------------laIyD~m~~~~~~V~Tv~~G~  165 (234)
                      -++..+..++...+..++.++..+-|.|+  --|++.-+|                   +..++.+..++.||...+.|+
T Consensus        60 al~~~~m~eL~~A~~~~e~D~s~~viVlt--G~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~  137 (290)
T KOG1680|consen   60 ALCRATMLELAEAFKDFESDDSVGVIVLT--GSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGF  137 (290)
T ss_pred             cccHHHHHHHHHHHHHhhccCcccEEEEE--cCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeece
Confidence            35677888999999999877655544444  333332222                   335667777899999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |-..|.-|.+.||-  |+|.|+|.|+.-++..|
T Consensus       138 AlgGG~ELalmCDi--rva~~~Akfg~~~~~~G  168 (290)
T KOG1680|consen  138 ALGGGLELALMCDI--RVAGEGAKFGFFEIRMG  168 (290)
T ss_pred             eeccchhhhhhcce--EeccCCCeecccccccC
Confidence            99999999999995  99999999999988755

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=90.95  E-value=0.32  Score=45.26  Aligned_cols=70  Identities=19%  Similarity=0.260  Sum_probs=58.4

Q ss_pred             CCceEEEEeCCCCCc-------cHHHHHHHHHH---hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          127 SKRVYMYINGPGGDV-------TPTLAIYDTMQ---SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       127 ~k~I~L~INSPGG~v-------~aglaIyD~m~---~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .-||..+|++||-..       -.+-+|...+.   ..+.||.++++|.-.|.|++-++-|++  -+++.||...+=.|.
T Consensus       150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE  227 (317)
T COG0825         150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE  227 (317)
T ss_pred             CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence            368999999999653       34556766554   557899999999999999999999995  799999999999998


Q ss_pred             Cc
Q 026750          197 GA  198 (234)
Q Consensus       197 ~~  198 (234)
                      |-
T Consensus       228 G~  229 (317)
T COG0825         228 GC  229 (317)
T ss_pred             hh
Confidence            75

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=90.90  E-value=1.2  Score=39.57  Aligned_cols=84  Identities=15%  Similarity=0.126  Sum_probs=56.5

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHHH----------HHHHHH-HhcCCCeEEEEcccccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPTL----------AIYDTM-QSLKSPVGTHCVGFAYH  168 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~agl----------aIyD~m-~~~~~~V~Tv~~G~AaS  168 (234)
                      ++.++..++.+.|..++.++..+  .|.|.+.      |+|+..-.          .+...+ ..++.||.+.+.|.|.+
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G  104 (254)
T PRK08252         27 VNAAVAQGLAAALDELDADPDLS--VGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALA  104 (254)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEeh
Confidence            67788888888888876543222  2334443      34442210          111111 35678999999999999


Q ss_pred             HHHHHHcCCCCCCEEeccCceEeee
Q 026750          169 LAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       169 ~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      .|.-|++++|-  |++.++++|-+=
T Consensus       105 gG~~lalacD~--~ia~~~a~f~~p  127 (254)
T PRK08252        105 GGFELALACDL--IVAARDAKFGLP  127 (254)
T ss_pred             HHHHHHHhCCE--EEEeCCCEEeCc
Confidence            99999999994  888888887653

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.26  E-value=1.8  Score=44.28  Aligned_cols=80  Identities=15%  Similarity=0.188  Sum_probs=56.1

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccH----------------HHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTP----------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~a----------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++..++.+.|..++.++..+- .|.+.      |-|+|+..                ...++..|..++.||.+.+-
T Consensus        26 l~~~~~~eL~~~l~~~~~d~~vr~-VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVn  104 (699)
T TIGR02440        26 LKAEFADQVSEILSQLKRDKSIRG-LVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIH  104 (699)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceE-EEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            677777888888887764332222 22223      33455432                12356678888999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCc
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLS  188 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnA  188 (234)
                      |.|.+.|.-|.++||  -|++.+++
T Consensus       105 G~a~GgG~~LaLacD--~ria~~~~  127 (699)
T TIGR02440       105 GACLGGGLELALACH--SRVCSDDD  127 (699)
T ss_pred             CEeecHHHHHHHhCC--EEEEcCCC
Confidence            999999999999999  48888764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.07  E-value=1.8  Score=44.46  Aligned_cols=86  Identities=15%  Similarity=0.150  Sum_probs=62.4

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH------------------HHHHHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP------------------TLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a------------------glaIyD~m~~~~~~V~Tv  161 (234)
                      ++.++..++.+.|..++.++..+  .+.|-|-|      +|+..                  +-.+++.|..++.||.+.
T Consensus        31 l~~~~~~eL~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAa  108 (714)
T TIGR02437        31 FDRATLASLDQALDAIKAQSSLK--GVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAA  108 (714)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            67778888888888876543322  33334433      34321                  224667788889999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      +.|.|.+.|.-|+++|+  .|++.++++|-+=..
T Consensus       109 i~G~alGGGleLalacD--~ria~~~a~fglPEv  140 (714)
T TIGR02437       109 INGIALGGGCECVLATD--FRIADDTAKIGLPET  140 (714)
T ss_pred             ECCeeecHHHHHHHhCC--EEEEeCCCEEecchh
Confidence            99999999999999999  499999988877443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=89.55  E-value=1.4  Score=44.05  Aligned_cols=85  Identities=11%  Similarity=-0.013  Sum_probs=56.5

Q ss_pred             cChhhHHHHHHHHhcccc-cCCCCceEEEEe-----CCCCCccHH--------------H-----HHHHHHHhcCCCeEE
Q 026750          106 IDEEFSNQILATMLYLDS-VDDSKRVYMYIN-----GPGGDVTPT--------------L-----AIYDTMQSLKSPVGT  160 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~-~~~~k~I~L~IN-----SPGG~v~ag--------------l-----aIyD~m~~~~~~V~T  160 (234)
                      ++.++..++.+.+..++. .+..+-|.|.=+     |.|+++..-              .     .+.+.|..++.||.+
T Consensus        49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA  128 (550)
T PRK08184         49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA  128 (550)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            677778888888887763 222222222111     344443210              0     144567778999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccC--ceEee
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIAL  192 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~Pn--AriMI  192 (234)
                      .+-|.|.+.|..|.+++|-  |++.++  ++|-+
T Consensus       129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~  160 (550)
T PRK08184        129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSL  160 (550)
T ss_pred             EECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence            9999999999999999994  888876  55544

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=89.33  E-value=1.7  Score=43.53  Aligned_cols=83  Identities=11%  Similarity=-0.025  Sum_probs=55.5

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEE-Ee-------CCCCCccHH-------------------HHHHHHHHhcCCCe
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMY-IN-------GPGGDVTPT-------------------LAIYDTMQSLKSPV  158 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~-IN-------SPGG~v~ag-------------------laIyD~m~~~~~~V  158 (234)
                      ++.++..++.+.|..++..+  ++|.+. |-       |.|+++...                   ..+++.|+.++.||
T Consensus        45 l~~~~l~eL~~al~~~~~~d--~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPv  122 (546)
T TIGR03222        45 YDLGVDIELHDAVQRIRFEH--PEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF  122 (546)
T ss_pred             CCHHHHHHHHHHHHHHHhcC--CCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence            56677777888887776222  234322 22       345554321                   12445667889999


Q ss_pred             EEEEccccccHHHHHHcCCCCCCEEeccC--ceEee
Q 026750          159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIAL  192 (234)
Q Consensus       159 ~Tv~~G~AaS~aslIlaaG~kgkR~a~Pn--AriMI  192 (234)
                      .+.+.|.|.+.|.-|.++||-  |++.++  ++|-+
T Consensus       123 IAAVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~  156 (546)
T TIGR03222       123 LAAVNGTCAGGGYELALACDE--IMLVDDRSSSVSL  156 (546)
T ss_pred             EEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence            999999999999999999984  888876  44443

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.28  E-value=2  Score=44.00  Aligned_cols=86  Identities=20%  Similarity=0.246  Sum_probs=60.5

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccHH------------------HHHHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT------------------LAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~ag------------------laIyD~m~~~~~~V~Tv  161 (234)
                      ++.++..++.+.+..++.++..+  -+.|.+.|      +|+..-                  ..+++.|..++.||.+.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa  108 (715)
T PRK11730         31 LDRATLASLGEALDALEAQSDLK--GLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAA  108 (715)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCcE--EEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57778888888888776533222  23344443      444210                  12455677788999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      +-|.|...|.-|+++||-  |++.++++|-+=..
T Consensus       109 v~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~  140 (715)
T PRK11730        109 INGYALGGGCECVLATDY--RVASPDARIGLPET  140 (715)
T ss_pred             ECCEeehHHHHHHHhCCE--EEEcCCCEEeCchh
Confidence            999999999999999994  99999888766443

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=88.65  E-value=3  Score=38.35  Aligned_cols=93  Identities=16%  Similarity=0.186  Sum_probs=67.0

Q ss_pred             EECcccChhhHHHHHHHHhccccc----CCCCceEEEEeCCCCCccHHHH-------HHHHHHhcC--CCeEEEEccc--
Q 026750          101 FIGQNIDEEFSNQILATMLYLDSV----DDSKRVYMYINGPGGDVTPTLA-------IYDTMQSLK--SPVGTHCVGF--  165 (234)
Q Consensus       101 fL~g~Id~e~a~~iia~Ll~L~~~----~~~k~I~L~INSPGG~v~agla-------IyD~m~~~~--~~V~Tv~~G~--  165 (234)
                      |.+|.+.+.....++..+.. ..+    ...-++.+.+.|.|+.+..+..       |+..+...+  .|+.+++.|-  
T Consensus        70 ~~GGS~G~~~g~Ki~r~~e~-A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~g  148 (274)
T TIGR03133        70 FQGGSVGEVHGAKIVGALRL-AIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVG  148 (274)
T ss_pred             ccCcCCCHHHHHHHHHHHHH-HHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence            56788888777777665543 322    1124899999999998877552       232222223  6999999999  


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      |++.++++.+.++-  .++.|.+++.+--|.
T Consensus       149 c~GG~a~~a~l~D~--vim~~~a~i~~aGP~  177 (274)
T TIGR03133       149 CFGGMGIAAGLCSY--LIMTEEGRLGLSGPE  177 (274)
T ss_pred             cchHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence            78888888888984  789999999988774

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=87.60  E-value=3.6  Score=42.13  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE-EEEeCC-------CCCccH----------------HHHHHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY-MYINGP-------GGDVTP----------------TLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSP-------GG~v~a----------------glaIyD~m~~~~~~V~Tv  161 (234)
                      ++.++..++.+.+..++.++   ++. +.|-+-       |+|+..                ...+++.|..++.||.+.
T Consensus        31 l~~~~~~~L~~~l~~~~~d~---~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa  107 (708)
T PRK11154         31 LKAEFAEQVRAILKQLREDK---ELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA  107 (708)
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            67778888888888776532   343 233333       344321                112567788899999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCc--eEeeeC
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLS--RIALDS  194 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnA--riMIHq  194 (234)
                      +.|.|.+.|.-|+++||-  |++.+++  +|-+..
T Consensus       108 V~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe  140 (708)
T PRK11154        108 IHGACLGGGLELALACHY--RVCTDDPKTVLGLPE  140 (708)
T ss_pred             ECCeeechHHHHHHhCCE--EEEeCCCCceEeCcc
Confidence            999999999999999994  8998875  555444

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=87.22  E-value=3.3  Score=38.59  Aligned_cols=93  Identities=18%  Similarity=0.240  Sum_probs=68.1

Q ss_pred             EECcccChhhHHHHHHHHhcccccCC----CCceEEEEeCCCCCccHHH-------HHHHHHHhcC--CCeEEEEccc--
Q 026750          101 FIGQNIDEEFSNQILATMLYLDSVDD----SKRVYMYINGPGGDVTPTL-------AIYDTMQSLK--SPVGTHCVGF--  165 (234)
Q Consensus       101 fL~g~Id~e~a~~iia~Ll~L~~~~~----~k~I~L~INSPGG~v~agl-------aIyD~m~~~~--~~V~Tv~~G~--  165 (234)
                      |++|.+.+.....+...+. +..+..    .-++.+++.|.|+-+.++.       .|+..+...+  .|+.+++.|-  
T Consensus        79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g  157 (301)
T PRK07189         79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG  157 (301)
T ss_pred             ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence            4688888877777766554 333332    2589999999999877544       2333333333  7999999998  


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      |++.++++.+.++-  .++.+++++.+--|.
T Consensus       158 c~GG~a~~a~l~D~--iIm~~~a~iglaGP~  186 (301)
T PRK07189        158 CFGGMGIAAALCSY--LIVSEEGRLGLSGPE  186 (301)
T ss_pred             CcHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence            88999998888984  789999999988774

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=83.66  E-value=6.5  Score=36.28  Aligned_cols=91  Identities=13%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHH-------H---HHhcCCCeEEEEccccccHHH
Q 026750          102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYD-------T---MQSLKSPVGTHCVGFAYHLAG  171 (234)
Q Consensus       102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD-------~---m~~~~~~V~Tv~~G~AaS~as  171 (234)
                      ++|.++...++.+...+..-.. . .-|+..+..|+|.-..+|.....       .   +.....|..++..|-++..++
T Consensus       132 ~gGSmg~~~geKi~r~~e~A~~-~-~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a  209 (285)
T TIGR00515       132 MGGSMGSVVGEKFVRAIEKALE-D-NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVS  209 (285)
T ss_pred             cCCCccHHHHHHHHHHHHHHHH-c-CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence            4677777777777766554332 2 35889999999988777663321       2   222357999999999999888


Q ss_pred             HHHc-CCCCCCEEeccCceEeeeCCC
Q 026750          172 FLLA-GGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       172 lIla-aG~kgkR~a~PnAriMIHqP~  196 (234)
                      ..++ .|+-  .++-|+|++.+--|.
T Consensus       210 as~a~~~D~--iia~p~A~ig~aGpr  233 (285)
T TIGR00515       210 ASFAMLGDL--NIAEPKALIGFAGPR  233 (285)
T ss_pred             HHHHhCCCE--EEEECCeEEEcCCHH
Confidence            8775 6774  899999999887664

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=82.48  E-value=8.6  Score=35.59  Aligned_cols=91  Identities=12%  Similarity=0.093  Sum_probs=64.7

Q ss_pred             ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHH-------HHHH---HhcCCCeEEEEccccccHHH
Q 026750          102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI-------YDTM---QSLKSPVGTHCVGFAYHLAG  171 (234)
Q Consensus       102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaI-------yD~m---~~~~~~V~Tv~~G~AaS~as  171 (234)
                      ++|.++...++.+...+..-. +. .-|+..+..|+|....+|..-       ...+   .....|..+++.|-++..++
T Consensus       133 ~gGS~g~~~~eKi~r~~e~A~-~~-~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a  210 (292)
T PRK05654        133 MGGSMGSVVGEKIVRAVERAI-EE-KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS  210 (292)
T ss_pred             ccCCccHHHHHHHHHHHHHHH-Hc-CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence            467777777777766555433 23 357888889999887776532       2222   23357999999999999888


Q ss_pred             HHHcC-CCCCCEEeccCceEeeeCCC
Q 026750          172 FLLAG-GEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       172 lIlaa-G~kgkR~a~PnAriMIHqP~  196 (234)
                      ..++. |+  -.++-|+|++.+--|.
T Consensus       211 as~a~~~D--~iia~p~A~ig~aGpr  234 (292)
T PRK05654        211 ASFAMLGD--IIIAEPKALIGFAGPR  234 (292)
T ss_pred             HHHHHcCC--EEEEecCcEEEecCHH
Confidence            77765 66  3789999999887764

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=81.64  E-value=6.2  Score=40.81  Aligned_cols=84  Identities=14%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceE--EEEeCCC------CCccH----------------HHHHHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVY--MYINGPG------GDVTP----------------TLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~--L~INSPG------G~v~a----------------glaIyD~m~~~~~~V~Tv  161 (234)
                      ++.++..++.+.|..++.++   ++.  |.+.+.|      +|+..                ...+++.|..++.||.+.
T Consensus        38 l~~~~~~~L~~al~~~~~d~---~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa  114 (737)
T TIGR02441        38 LSKELFAEFKEVMNELWTNE---AIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA  114 (737)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            56677788888888776432   343  3445444      43321                124666788889999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCc--eEeeeC
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLS--RIALDS  194 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnA--riMIHq  194 (234)
                      +-|.|.+.|.-|.++|+  -|++.+++  +|-+..
T Consensus       115 v~G~a~GgG~eLALacD--~ria~~~a~a~fglpE  147 (737)
T TIGR02441       115 ISGSCLGGGLELALACH--YRIATKDRKTLLGLPE  147 (737)
T ss_pred             ECCEeecHHHHHHHhCC--EEEEcCCCCCeEecch
Confidence            99999999999999999  49999885  454433

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	234
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		2e-30
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		2e-30
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		2e-30
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		2e-30
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		5e-30
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		7e-30
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		9e-30
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		2e-29
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		2e-28
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		2e-28
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		3e-28
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		6e-28
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		5e-26
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		3e-25
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		3e-25
2cby_A	208	Crystal Structure Of The Atp-Dependent Clp Protease		2e-23
2ce3_A	200	Crystal Structure Of The Atp-Dependent Clp Protease		2e-23
2c8t_A	206	The 3.0 A Resolution Structure Of Caseinolytic Clp		2e-23
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		1e-18
2f6i_A	215	Crystal Structure Of The Clpp Protease Catalytic Do		1e-18
1y7o_A	218	The Structure Of Streptococcus Pneumoniae A153p Clp		4e-15
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		1e-11
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		1e-11

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 4/157 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+ +T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K + 
Sbjct: 4   PTVIEQTNRGERAY---DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEIS 60
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG +T  +AIYDTMQ +K  V T C+G A  +  FLLA GEKG R A+P S + 
Sbjct: 61  LYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVM 120
Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G A+GQA +I   A  +L +RD + K L+ +T
Sbjct: 121 IHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERT 157

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 4/157 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+ +T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K + 
Sbjct: 5   PTVIEQTNRGERAY---DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEIS 61
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG +T  +AIYDTMQ +K  V T C+G A  +  FLLA GEKG R A+P S + 
Sbjct: 62  LYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVM 121
Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G A+GQA +I   A  +L +RD + K L+ +T
Sbjct: 122 IHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERT 158

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 4/157 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+ +T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K + 
Sbjct: 4   PTVIEQTNRGERAY---DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEIS 60
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG +T  +AIYDTMQ +K  V T C+G A  +  FLLA GEKG R A+P S + 
Sbjct: 61  LYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVM 120
Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G A+GQA +I   A  +L +RD + K L+ +T
Sbjct: 121 IHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERT 157

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 4/157 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+ +T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K + 
Sbjct: 4   PTVIEQTNRGERAY---DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEIS 60
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG +T  +AIYDTMQ +K  V T C+G A  +  FLLA GEKG R A+P S + 
Sbjct: 61  LYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVM 120
Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G A+GQA +I   A  +L +RD + K L+ +T
Sbjct: 121 IHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERT 157

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 4/157 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+  T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K +Y
Sbjct: 7   PTVIETTNRGERAY---DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIY 63
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG VT   AIYDT+Q +K  V T C+G A  +  FLLA G KG R A+P + + 
Sbjct: 64  LYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVM 123
Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G A+GQA +I   A+ +L+ R+ + + LS +T
Sbjct: 124 IHQPLGGAQGQATEIEIAANHILKTREKLNRILSERT 160

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 4/157 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+  T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K +Y
Sbjct: 5   PTVIETTNRGERAY---DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIY 61
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG VT   AIYDT+Q +K  V T C+G A  +  FLLA G KG R A+P + + 
Sbjct: 62  LYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVM 121
Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G A+GQA +I   A+ +L+ R+ + + LS +T
Sbjct: 122 IHQPLGGAQGQATEIEIAANHILKTREKLNRILSERT 158

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score =  126 bits (317), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 4/157 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+  T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+L + D  K +Y
Sbjct: 5   PTVIETTNRGERAY---DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIY 61
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG VT   AIYDT+Q +K  V T C+G A  +  FLLA G KG R A+P + + 
Sbjct: 62  LYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVM 121
Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G A+GQA +I   A+ +L+ R+ + + LS +T
Sbjct: 122 IHQPLGGAQGQATEIEIAANHILKTREKLNRILSERT 158

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 114/194 (58%), Gaps = 4/194 (2%)
Query: 37  PNLSAEFYGR--VHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNAL 94
           P L+A F  +    ++L +G+   + +           P V+ +T G G   + D+++ L
Sbjct: 22  PRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPLIPIVVEQT-GRGERAY-DIYSRL 79
Query: 95  YRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL 154
            RER++ +   ID+  ++ ++A +L+L S  + K ++MYIN PGG VT  LAIYDTMQ +
Sbjct: 80  LRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYI 139
Query: 155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELL 214
            +P+ T CVG A  +   LLA G  G R ++P SRI +  P+G ARGQA DI  +A+E++
Sbjct: 140 LNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIM 199
Query: 215 RVRDYIFKELSRKT 228
           +++  ++   ++ T
Sbjct: 200 KLKKQLYNIYAKHT 213

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 93/147 (63%), Gaps = 4/147 (2%)
Query: 72  TPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRV 130
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +
Sbjct: 3   VPMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 59
Query: 131 YMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRI 190
           Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+
Sbjct: 60  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 119
Query: 191 ALDSPAGAARGQADDIRNEADELLRVR 217
            +  P G  +GQA DI   A E+L+V+
Sbjct: 120 MIHQPLGGYQGQATDIEIHAREILKVK 146

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y
Sbjct: 4   PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 60
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ 
Sbjct: 61  LYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVM 120
Query: 192 LDSPAGAARGQADDIRNEADELLRVR 217
           +  P G  +GQA DI   A E+L+V+
Sbjct: 121 IHQPLGGYQGQATDIEIHAREILKVK 146

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 93/147 (63%), Gaps = 4/147 (2%)
Query: 72  TPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRV 130
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +
Sbjct: 17  VPMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 73
Query: 131 YMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRI 190
           Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+
Sbjct: 74  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 133
Query: 191 ALDSPAGAARGQADDIRNEADELLRVR 217
            +  P G  +GQA DI   A E+L+V+
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVK 160

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 92/147 (62%), Gaps = 4/147 (2%)
Query: 72  TPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRV 130
            P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +
Sbjct: 3   VPMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDI 59
Query: 131 YMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRI 190
           Y+YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+
Sbjct: 60  YLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRV 119
Query: 191 ALDSPAGAARGQADDIRNEADELLRVR 217
            +  P G  +GQA DI     E+L+V+
Sbjct: 120 MIHQPLGGYQGQATDIEIHCREILKVK 146

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
Query: 72  TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
            P V+ +T G    +  D+++ L +ER++F+   +++  +N ++A +L+L+S D  K +Y
Sbjct: 7   VPTVIEKTAG--GERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIY 64
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
            YIN PGG VT    +YDT Q +K  V T C+G A      LLAGG KG R ++P S+I 
Sbjct: 65  FYINSPGGXVTAGXGVYDTXQFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIX 124
Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G  RGQA DI   A  +LR++D + K L+  T
Sbjct: 125 IHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHT 161

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+  T  GE S+   D+++ L ++R++ +   I++  ++ I+A +L+L++ D  K + 
Sbjct: 6   PYVIENTDRGERSY---DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIG 62
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG +T  L+IYDTM  ++  V T C+G A  +  FLL+ G KG R ++P SRI 
Sbjct: 63  LYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIM 122
Query: 192 LDSPAGAARGQADDIRNEADELLRVR 217
           +  P G A+GQA DI   ++E+LR++
Sbjct: 123 IHQPLGGAQGQASDIEIISNEILRLK 148

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+  T  GE S+   D+++ L ++R++ +   I++  ++ I+A +L+L++ D  K + 
Sbjct: 6   PYVIENTDRGERSY---DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIG 62
Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG +T  L+IYDTM  ++  V T C+G A  +  FLL+ G KG R ++P SRI 
Sbjct: 63  LYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIM 122
Query: 192 LDSPAGAARGQADDIRNEADELLRVR 217
           +  P G A+GQA DI   ++E+LR++
Sbjct: 123 IHQPLGGAQGQASDIEIISNEILRLK 148

>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 208

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 84/145 (57%)
Query: 78  RTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGP 137
           R+  +G      ++  L  ER+IF+G  +++E +N++ A +L L + D SK + +YIN P
Sbjct: 8   RSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSP 67
Query: 138 GGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG 197
           GG ++  +AIYDTM      + T+ +G A  +  FLLA G KG R A+P +RI +  P G
Sbjct: 68  GGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLG 127
Query: 198 AARGQADDIRNEADELLRVRDYIFK 222
              G A DI  +A++   ++  +F+
Sbjct: 128 GVTGSAADIAIQAEQFAVIKKEMFR 152

>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 200

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 84/145 (57%)
Query: 78  RTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGP 137
           R+  +G      ++  L  ER+IF+G  +++E +N++ A +L L + D SK + +YIN P
Sbjct: 8   RSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSP 67
Query: 138 GGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG 197
           GG ++  +AIYDTM      + T+ +G A  +  FLLA G KG R A+P +RI +  P G
Sbjct: 68  GGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLG 127
Query: 198 AARGQADDIRNEADELLRVRDYIFK 222
              G A DI  +A++   ++  +F+
Sbjct: 128 GVTGSAADIAIQAEQFAVIKKEMFR 152

>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp Protease 1 From Mycobacterium Tuberculosis Length = 206

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 84/145 (57%)
Query: 78  RTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGP 137
           R+  +G      ++  L  ER+IF+G  +++E +N++ A +L L + D SK + +YIN P
Sbjct: 9   RSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSP 68
Query: 138 GGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG 197
           GG ++  +AIYDTM      + T+ +G A  +  FLLA G KG R A+P +RI +  P G
Sbjct: 69  GGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLG 128
Query: 198 AARGQADDIRNEADELLRVRDYIFK 222
              G A DI  +A++   ++  +F+
Sbjct: 129 GVTGSAADIAIQAEQFAVIKKEMFR 153

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 72  TPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRV 130
            P V+ +T  GE ++   D+++ L ++RVIF+   +++  +N  +A  L+L+S + +K +
Sbjct: 5   VPXVVEQTSRGERAY---DIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDI 61
Query: 131 YMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRI 190
            +YIN PGG VT   AIYDT Q +K  V T C+G A      LLAGG KG R  +P S +
Sbjct: 62  NLYINSPGGAVTSAXAIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSV 121
Query: 191 ALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
            +    G  +GQ  DI+  A +  RV D + + L++ T
Sbjct: 122 XIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHT 159

>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain From Plasmodium Falciparum Length = 215

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 94  LYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQS 153
            +++R+I++   I+++ ++++++ +LYLD+++ +  + +YIN PGG +   LAI D    
Sbjct: 36  FFKKRIIYLTDEINKKTADELISQLLYLDNINHND-IKIYINSPGGSINEGLAILDIFNY 94
Query: 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADEL 213
           +KS + T   G    +A  +LA G+KG R ++P  RI +  P G A G   DI  +  E+
Sbjct: 95  IKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEI 154
Query: 214 LRVRDYIFKELSRKTD 229
           L ++  ++  LS  T+
Sbjct: 155 LYLKKLLYHYLSSFTN 170

>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp Length = 218

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 9/168 (5%)
Query: 67  MMPIGT---PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLD 122
           ++P G+   P V+ +T  GE S+   D+++ L ++R+I +   +++  +N ++A +L+LD
Sbjct: 14  LVPRGSHMIPVVIEQTSRGERSY---DIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLD 70
Query: 123 SVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNR 182
           + D +K +Y+Y+N PGG V+  LAI DT   +K+ V T   G A      + + G KG R
Sbjct: 71  AQDSTKDIYLYVNTPGGSVSAGLAIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGKR 130
Query: 183 SAMPLSRIALDSP--AGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
             +P +   +  P        Q  D+    + LL+ R+ + K L+  +
Sbjct: 131 FXLPNAEYXIHQPXGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENS 178

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 11/153 (7%)
Query: 88  VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG--------- 138
           +++ + L  +R+IF+   I    S QI++ +LYL+     K +++YIN  G         
Sbjct: 33  INIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIIN 92
Query: 139 -GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD-SPA 196
              +T  ++I D +  + S V T+C+G AY +A  L + G+KG R ++  S   L+ S +
Sbjct: 93  LNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYS 152
Query: 197 GAARGQADDIRNEADELLRVRDYIFKELSRKTD 229
                QA +I  +  E++  +  + + +S+ T+
Sbjct: 153 IIPFNQATNIEIQNKEIMNTKKKVIEIISKNTE 185

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 11/147 (7%)
Query: 94  LYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTP 143
           L  +R+IF+   I    S QI++ +LYL+     K +++YIN  G            +T 
Sbjct: 25  LLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITD 84
Query: 144 TLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD-SPAGAARGQ 202
            ++I D +  + S V T+C+G AY +A  L + G+KG R ++  S   L+ S +     Q
Sbjct: 85  VISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQ 144
Query: 203 ADDIRNEADELLRVRDYIFKELSRKTD 229
           A +I  +  E++  +  + + +S+ T+
Sbjct: 145 ATNIEIQNKEIMNTKKKVIEIISKNTE 171
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	1e-52
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	2e-52
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	4e-51
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	8e-51
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	2e-50
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	3e-50
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	2e-49
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score =  167 bits (426), Expect = 1e-52
 Identities = 63/163 (38%), Positives = 99/163 (60%), Gaps = 5/163 (3%)

Query: 67  MMPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVD 125
              +  P V+ +T  GE ++   D+++ L +ER++F+   +++  +N ++A +L+L+S D
Sbjct: 3   ANNL-VPTVIEKTAGGERAF---DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESED 58

Query: 126 DSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAM 185
             K +Y YIN PGG VT  + +YDTMQ +K  V T C+G A  +   LLAGG KG R ++
Sbjct: 59  PDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSL 118

Query: 186 PLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           P S+I +  P G  RGQA DI   A  +LR++D + K L+  T
Sbjct: 119 PSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHT 161

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score =  167 bits (425), Expect = 2e-52
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 4/157 (2%)

Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+ +T  GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y
Sbjct: 4   PMVIEQTSRGERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIY 60

Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +YIN PGG +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ 
Sbjct: 61  LYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVM 120

Query: 192 LDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G  +GQA DI   A E+L+V+  + + ++  T
Sbjct: 121 IHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHT 157

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score =  164 bits (417), Expect = 4e-51
 Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 5/162 (3%)

Query: 68  MPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDD 126
           M +  P V+  T  GE ++   D+++ L ++R+I +G  ID+  +N I++ +L+L + D 
Sbjct: 1   MNL-IPTVIETTNRGERAY---DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDS 56

Query: 127 SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP 186
            K +Y+YIN PGG VT   AIYDT+Q +K  V T C+G A  +  FLLA G KG R A+P
Sbjct: 57  EKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALP 116

Query: 187 LSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
            + + +  P G A+GQA +I   A+ +L+ R+ + + LS +T
Sbjct: 117 NAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERT 158

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score =  165 bits (420), Expect = 8e-51
 Identities = 69/213 (32%), Positives = 117/213 (54%), Gaps = 6/213 (2%)

Query: 19  KLFSGLKIQSPSVFGTGKPNLSAEF--YGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVL 76
            +  G    +   +    P L+A F       ++L +G+   + +           P V+
Sbjct: 4   GILVGGARVASCRYPALGPRLAAHFPAQRPPQRTLQNGLALQRCLHATATRALPLIPIVV 63

Query: 77  YRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYIN 135
            +T  GE   +  D+++ L RER++ +   ID+  ++ ++A +L+L S  + K ++MYIN
Sbjct: 64  EQTGRGE---RAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYIN 120

Query: 136 GPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP 195
            PGG VT  LAIYDTMQ + +P+ T CVG A  +   LLA G  G R ++P SRI +  P
Sbjct: 121 SPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQP 180

Query: 196 AGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           +G ARGQA DI  +A+E+++++  ++   ++ T
Sbjct: 181 SGGARGQATDIAIQAEEIMKLKKQLYNIYAKHT 213

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score =  162 bits (412), Expect = 2e-50
 Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 2/148 (1%)

Query: 81  GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGD 140
           G      V  +  L  ER+IF+G  +++E +N++ A +L L + D SK + +YIN PGG 
Sbjct: 13  GLSLTDSV--YERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGS 70

Query: 141 VTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR 200
           ++  +AIYDTM      + T+ +G A  +  FLLA G KG R A+P +RI +  P G   
Sbjct: 71  ISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVT 130

Query: 201 GQADDIRNEADELLRVRDYIFKELSRKT 228
           G A DI  +A++   ++  +F+  +  T
Sbjct: 131 GSAADIAIQAEQFAVIKKEMFRLNAEFT 158

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score =  162 bits (412), Expect = 3e-50
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 67  MMPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVD 125
                           +      D+    +++R+I++   I+++ ++++++ +LYLD+  
Sbjct: 11  SSGRENLYFQGHMDIKDMKK---DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDN-I 66

Query: 126 DSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAM 185
           +   + +YIN PGG +   LAI D    +KS + T   G    +A  +LA G+KG R ++
Sbjct: 67  NHNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSL 126

Query: 186 PLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
           P  RI +  P G A G   DI  +  E+L ++  ++  LS  T
Sbjct: 127 PNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFT 169

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score =  160 bits (406), Expect = 2e-49
 Identities = 52/169 (30%), Positives = 94/169 (55%), Gaps = 9/169 (5%)

Query: 66  AMMPIG---TPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYL 121
            ++P G    P V+ +T  GE S+   D+++ L ++R+I +   +++  +N ++A +L+L
Sbjct: 13  GLVPRGSHMIPVVIEQTSRGERSY---DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFL 69

Query: 122 DSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGN 181
           D+ D +K +Y+Y+N PGG V+  LAI DTM  +K+ V T  +G A  +   + + G KG 
Sbjct: 70  DAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGK 129

Query: 182 RSAMPLSRIALDSPAGAARG--QADDIRNEADELLRVRDYIFKELSRKT 228
           R  +P +   +  P G   G  Q  D+    + LL+ R+ + K L+  +
Sbjct: 130 RFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENS 178

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 3/133 (2%)

Query: 98  RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSP 157
            V  I   I     +Q    +   +  D+++ + + ++ PGG     + I   +Q  K P
Sbjct: 11  YVAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQSKIP 69

Query: 158 VGTHCVGFAYHLAGFLLAGGEKGNRSAM-PLSRIALDSPAGAARGQADDIRNEADELLRV 216
           V  +        A          +  AM P + I    P          I          
Sbjct: 70  VIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPAITNYF 129

Query: 217 RDYIFKELSRKTD 229
             YI K L++++ 
Sbjct: 130 IAYI-KSLAQESG 141

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 37/284 (13%), Positives = 69/284 (24%), Gaps = 104/284 (36%)

Query: 18  LKLFS---GLKIQS-PSVFGTGKP---NLSAEF---------------YGRVHKSLYSGI 55
             L       + Q  P    T  P   ++ AE                  ++   + S +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 56  RNDKP--IRGR---IAMMP----IGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNI 106
              +P   R     +++ P    I    +L             +W  + +  V      +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHI-PTILLSL-----------IWFDVIKSDV----MVV 407

Query: 107 DEEFSNQILAT-----------MLYLD---SVDDSKRV-------YMYING-PGGDVTPT 144
             +     L              +YL+    +++   +       Y         D+ P 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 145 LA---IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD-------- 193
                 Y           +H     +HL        E   R  +    + LD        
Sbjct: 468 YLDQYFY-----------SH---IGHHLKN-----IEHPERMTL-FRMVFLDFRFLEQKI 507

Query: 194 SPAGAARGQADDIRNEADELLRVRDYIFK---ELSRK-TDYEGF 233
                A   +  I N   +L   + YI     +  R       F
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	100.0
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	100.0
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	100.0
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	100.0
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	100.0
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	100.0
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	100.0
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	100.0
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.85
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.6
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.27
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.16
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	97.27
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	97.1
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	97.04
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.03
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	97.02
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	96.96
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	96.88
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	96.87
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	96.7
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	96.69
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	96.63
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	96.59
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	96.56
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	96.55
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	96.35
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	96.34
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	96.26
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	96.25
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	96.24
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	96.16
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	96.12
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	96.09
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	96.08
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	96.05
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.01
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	95.99
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	95.97
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	95.95
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	95.87
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	95.84
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	95.83
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	95.81
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	95.78
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	95.73
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	95.73
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	95.72
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	95.7
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	95.67
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	95.55
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	95.48
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	95.42
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	95.41
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	95.35
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	95.35
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	95.33
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	95.28
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	95.26
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	95.25
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	95.24
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	95.24
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	95.23
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	95.19
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	95.07
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	95.06
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	95.05
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.04
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	95.03
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	94.91
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	94.86
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	94.85
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	94.84
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	94.83
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.81
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	94.81
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	94.78
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	94.54
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	94.47
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	94.27
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	93.97
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	93.78
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	93.69
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	93.62
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	93.51
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	93.38
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	93.08
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	93.06
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	92.63
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	92.63
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	92.49
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	92.47
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	92.44
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	92.38
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	91.46
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	91.45
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	91.37
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	91.21
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	91.12
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	90.96
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.85
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	90.74
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	89.62
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	83.68

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=100.00  E-value=2.3e-51  Score=355.57  Aligned_cols=152  Identities=26%  Similarity=0.417  Sum_probs=141.9

Q ss_pred             CCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHH
Q 026750           83 GSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQ  152 (234)
Q Consensus        83 ~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~  152 (234)
                      +.++|+|||++||++|||||+++||++++++|++||++|+.+++.++|+|||||||          |+|++|++|||+|+
T Consensus        14 ~~~~~~di~s~Ll~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~   93 (205)
T 4gm2_A           14 RENLYFQGPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVIN   93 (205)
T ss_dssp             --------CHHHHTTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHhcCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHH
Confidence            44679999999999999999999999999999999999999999999999999999          99999999999999


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKTDYE  231 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~-~G~a~di~~~a~el~~lr~~i~~iya~~TG~~  231 (234)
                      ++++||+|+|+|+|||||++||+||+||||+++|||++|||||++++ +|+++|+++++++|+++++.+.++|+++||+|
T Consensus        94 ~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~  173 (205)
T 4gm2_A           94 YISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKD  173 (205)
T ss_dssp             HSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             CCC
Q 026750          232 GFK  234 (234)
Q Consensus       232 ~ek  234 (234)
                      .|+
T Consensus       174 ~e~  176 (205)
T 4gm2_A          174 TNV  176 (205)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=100.00  E-value=2.4e-45  Score=316.38  Aligned_cols=160  Identities=39%  Similarity=0.706  Sum_probs=149.1

Q ss_pred             CCcceeecCCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHH
Q 026750           72 TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM  151 (234)
Q Consensus        72 ~P~v~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m  151 (234)
                      +|.|..+++..++  ++|||++||++|||||+|+|++++++.++++|++|+.+++.++|.||||||||++++|++|||+|
T Consensus         7 ~p~~~~~~~~~~~--~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i   84 (201)
T 3p2l_A            7 VPTVIEKTAGGER--AFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTM   84 (201)
T ss_dssp             SSEECCC-----C--CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHH
T ss_pred             CCeeeeeCCCCCc--ccCHHHHhhCCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHH
Confidence            6777665553332  58999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026750          152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYE  231 (234)
Q Consensus       152 ~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~  231 (234)
                      +.++.||+|+|.|+|||+|++|+++|++|||++.|||++|||||+++..|+++|+++++++++++++.+.++|+++||++
T Consensus        85 ~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~  164 (201)
T 3p2l_A           85 QFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQD  164 (201)
T ss_dssp             HHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 026750          232 GF  233 (234)
Q Consensus       232 ~e  233 (234)
                      .|
T Consensus       165 ~e  166 (201)
T 3p2l_A          165 LE  166 (201)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=100.00  E-value=4.5e-45  Score=315.13  Aligned_cols=160  Identities=38%  Similarity=0.685  Sum_probs=148.9

Q ss_pred             CCcceeecCCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHH
Q 026750           72 TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM  151 (234)
Q Consensus        72 ~P~v~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m  151 (234)
                      +|.|..+++..+  +.+|||++||++|||||+|+|++++++.|+++|++++.+++.++|.||||||||++++|++|||+|
T Consensus         4 ~p~~~~~~~~~~--~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~~~I~~~i   81 (203)
T 3qwd_A            4 IPTVIETTNRGE--RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTI   81 (203)
T ss_dssp             CCEEECC-------CEEEHHHHHHHTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHH
T ss_pred             CCeeeeecCCCC--cccCHHHHHhcCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            566766555333  258999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026750          152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYE  231 (234)
Q Consensus       152 ~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~  231 (234)
                      ++++.||+|+|.|+|||+|++|+++|++|+|++.|||++|||||+++..|+++|+++++++++++++.+.++|+++||++
T Consensus        82 ~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~  161 (203)
T 3qwd_A           82 QHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQS  161 (203)
T ss_dssp             HHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCC
T ss_pred             HHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 026750          232 GF  233 (234)
Q Consensus       232 ~e  233 (234)
                      .|
T Consensus       162 ~e  163 (203)
T 3qwd_A          162 IE  163 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=100.00  E-value=5.7e-44  Score=321.37  Aligned_cols=149  Identities=38%  Similarity=0.656  Sum_probs=143.6

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      .+|+|||++||++|||||+|+|++++++.++++|++|+.+++.++|.||||||||+|++|++|||+|++++.||+|+|.|
T Consensus        70 ~~~~di~s~ll~erII~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~t~v~G  149 (277)
T 1tg6_A           70 ERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVG  149 (277)
T ss_dssp             ---CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSCSCEEEEEEE
T ss_pred             cccccHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            45899999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      +|||||++|+++|++|||++.||+++|||||+++..|++.|+++++++++++++.+.++|+++||++.|
T Consensus       150 ~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e  218 (277)
T 1tg6_A          150 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQ  218 (277)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             EeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999875

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=100.00  E-value=1e-41  Score=290.12  Aligned_cols=160  Identities=37%  Similarity=0.642  Sum_probs=150.8

Q ss_pred             CCcceeecCCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHH
Q 026750           72 TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM  151 (234)
Q Consensus        72 ~P~v~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m  151 (234)
                      +|+|+.+.+.++  +|+|+|++|+++|+|||+|+|+++.++.++++|++++.+++.++|.|+||||||+++++++|||+|
T Consensus         3 ~p~~~~~~~~~~--~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i   80 (193)
T 1yg6_A            3 VPMVIEQTSRGE--RSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTM   80 (193)
T ss_dssp             SCBCCSSSCSSC--CCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHH
T ss_pred             CCeecccCCCCc--chhhHHHHHhcCCEEEEcCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHH
Confidence            567776655333  379999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             HhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026750          152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYE  231 (234)
Q Consensus       152 ~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~  231 (234)
                      +.++.||+|+|.|+|||+|++|+++|+++||++.|++++|+|||+++..|++.|++..+++++++++.+.++|+++||++
T Consensus        81 ~~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~  160 (193)
T 1yg6_A           81 QFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQS  160 (193)
T ss_dssp             HHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999988899999999999999999999999999999998


Q ss_pred             CC
Q 026750          232 GF  233 (234)
Q Consensus       232 ~e  233 (234)
                      .|
T Consensus       161 ~~  162 (193)
T 1yg6_A          161 LE  162 (193)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=100.00  E-value=3.1e-41  Score=292.98  Aligned_cols=160  Identities=29%  Similarity=0.538  Sum_probs=136.3

Q ss_pred             CCcceeecCCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHH
Q 026750           72 TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM  151 (234)
Q Consensus        72 ~P~v~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m  151 (234)
                      +|.|..++++++  +|+|||++|+++|||||+|+|++++++.|+++|++++.+++.++|.|+||||||++++|++|||+|
T Consensus        22 ~p~~~~~~~~~~--~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i   99 (218)
T 1y7o_A           22 IPVVIEQTSRGE--RSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTM   99 (218)
T ss_dssp             CCEECC---------CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHH
T ss_pred             CceeeecCCCCc--chhhHHHHhhcCCEEEEeCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHH
Confidence            566666655433  589999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCcc--ccCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026750          152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA--RGQADDIRNEADELLRVRDYIFKELSRKTD  229 (234)
Q Consensus       152 ~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~--~G~a~di~~~a~el~~lr~~i~~iya~~TG  229 (234)
                      +.++.||.|+|.|.|+|+|++|+++|++|||++.|+|+||+|||+++.  .|++.|+++++++++++++.+.++|++++|
T Consensus       100 ~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G  179 (218)
T 1y7o_A          100 NFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSG  179 (218)
T ss_dssp             HHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEecccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999887  899999999999999999999999999999


Q ss_pred             CCCC
Q 026750          230 YEGF  233 (234)
Q Consensus       230 ~~~e  233 (234)
                      ++.+
T Consensus       180 ~~~~  183 (218)
T 1y7o_A          180 QSME  183 (218)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            9854

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=100.00  E-value=1.6e-40  Score=288.52  Aligned_cols=157  Identities=27%  Similarity=0.523  Sum_probs=138.1

Q ss_pred             eeecCCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcC
Q 026750           76 LYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK  155 (234)
Q Consensus        76 ~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~  155 (234)
                      +++.+......|+|+|++|+++|+|||+|+|+++.++.++++|++++.+++ ++|.|+||||||+|+++++|||+|+.++
T Consensus        18 ~~~~~~~~~~~~~d~~~~l~~~riI~l~G~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~~~   96 (215)
T 2f6i_A           18 YFQGHMDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNYIK   96 (215)
T ss_dssp             ----CCCCSCSSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHHHHHHHHHHHSS
T ss_pred             ccCCCCccccccccHHHHHhCceEEEEccEECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            344333334568999999999999999999999999999999999998887 9999999999999999999999999999


Q ss_pred             CCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          156 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       156 ~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      .||+|+|.|+|||+|++|+++|++|||++.|++++|+|||+++..|++.|+..++++++++++.+.++|+++||++.|
T Consensus        97 ~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e  174 (215)
T 2f6i_A           97 SDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVE  174 (215)
T ss_dssp             SCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             CCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence            999999999999999999999999999999999999999999899999999999999999999999999999999865

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=100.00  E-value=1.7e-39  Score=279.88  Aligned_cols=149  Identities=34%  Similarity=0.568  Sum_probs=135.4

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ++|+|+|++|+++|+|||+|+|++..++.|+++|.+++.+++.++|.|+||||||+++++++|||+|+.++.||+|+|.|
T Consensus        15 ~~~~~~~~~l~~~rii~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g   94 (208)
T 2cby_A           15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMG   94 (208)
T ss_dssp             CHHHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEE
T ss_pred             cchhhHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEECc
Confidence            56999999999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      +|||+|++|+++|+++||++.|+|++|+|||+++..|++.|++..+++++++++.+.++|+++||++.+
T Consensus        95 ~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~  163 (208)
T 2cby_A           95 MAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIE  163 (208)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             EeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence            999999999999999999999999999999998889999999999999999999999999999999865

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.85  E-value=6.1e-22  Score=173.59  Aligned_cols=129  Identities=17%  Similarity=0.185  Sum_probs=111.8

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEE---ccccccHHHHHHc
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHC---VGFAYHLAGFLLA  175 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~---~G~AaS~aslIla  175 (234)
                      +|+|+|.|++++++.+.++|..++. ++.+.|.|+||||||++.++..||++|+.++.||.++|   .|.|+|+|++|++
T Consensus        12 vI~i~g~I~~~~~~~l~~~l~~a~~-~~~~~Ivl~inspGG~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~   90 (230)
T 3viv_A           12 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL   90 (230)
T ss_dssp             EEEEESCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEEBSCEEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHH
T ss_pred             EEEEeCEECHHHHHHHHHHHHHHhc-CCCCEEEEEEeCCCcCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHH
Confidence            5889999999999999999998875 45899999999999999999999999999999999999   9999999999999


Q ss_pred             CCCCCCEEeccCceEeeeCCCC--ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          176 GGEKGNRSAMPLSRIALDSPAG--AARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       176 aG~kgkR~a~PnAriMIHqP~~--~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      +|++  |++.|+++|++|+|..  +..|++.++  +.+.+..++.. .+.|++++|++.+
T Consensus        91 a~d~--~~a~p~a~ig~~~p~~~~~~~G~~~~~--~~k~~~~~~~~-~~~la~~~Gr~~~  145 (230)
T 3viv_A           91 GSHL--IAMAPGTSIGACRPILGYSQNGSIIEA--PPAITNYFIAY-IKSLAQESGRNAT  145 (230)
T ss_dssp             TSSE--EEECTTCEEECCCEEEEECTTSCEEEC--CHHHHHHHHHH-HHHHHHHTTCCHH
T ss_pred             hcCc--eeECCCCEEEeccceecCCCCCCchHH--HHHHHHHHHHH-HHHHHHHhCcCHH
Confidence            9994  9999999999999984  456775422  34455555554 4789999998753

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.60  E-value=1.6e-15  Score=147.86  Aligned_cols=140  Identities=12%  Similarity=0.096  Sum_probs=100.8

Q ss_pred             hchHhhhcCCcEEEECccc---ChhhHHHHHHHHhcccccCCCCceEEEEeCCC-CCccHHHHHHHHHHhcC---CCeEE
Q 026750           88 VDLWNALYRERVIFIGQNI---DEEFSNQILATMLYLDSVDDSKRVYMYINGPG-GDVTPTLAIYDTMQSLK---SPVGT  160 (234)
Q Consensus        88 ~Di~~~L~~~RiIfL~g~I---d~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-G~v~aglaIyD~m~~~~---~~V~T  160 (234)
                      .|.+++|+++   |+++++   ++..+++|+++|..+..+++.+.|.|+||||| |++.++..|||+|+.++   .+|++
T Consensus        49 ~~~~~~ll~~---~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~~~I~~~i~~~k~~gkpvva  125 (593)
T 3bf0_A           49 SQRFSKLSRQ---LLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYA  125 (593)
T ss_dssp             ---------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CChHHHHHhh---hccCCcccccccCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCeEEE
Confidence            3556777776   777765   46789999999999988888899999999999 99999999999999995   67888


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc---cc---------------cC--------------HHHHHH
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA---AR---------------GQ--------------ADDIRN  208 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~---~~---------------G~--------------a~di~~  208 (234)
                      ++. .|+|.+.+|+++++  ++++.|++++|+|+|.+.   +.               |+              .++.+.
T Consensus       126 ~~~-~aas~~y~lAsaad--~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~  202 (593)
T 3bf0_A          126 VGE-NYSQGQYYLASFAN--KIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREA  202 (593)
T ss_dssp             EES-CEEHHHHHHHTTSS--EEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHH
T ss_pred             EEc-cchhHHHHHHHhCC--EEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHH
Confidence            864 47888888888886  699999999999999854   11               21              123344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          209 EADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       209 ~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      ..+.|..+.+.+.+.+++++|++.|
T Consensus       203 ~~~~l~~~~~~~~~~va~~Rg~~~e  227 (593)
T 3bf0_A          203 DSRWIGELWQNYLNTVAANRQIPAE  227 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            4456667888888889999998865

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.27  E-value=3.4e-11  Score=104.96  Aligned_cols=133  Identities=13%  Similarity=0.133  Sum_probs=105.0

Q ss_pred             EEEECcccChh------------hHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHh----cCCCeEEEE
Q 026750           99 VIFIGQNIDEE------------FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQS----LKSPVGTHC  162 (234)
Q Consensus        99 iIfL~g~Id~e------------~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~----~~~~V~Tv~  162 (234)
                      +|.+.|+|.+.            ...++.+.|..+..++..+.|.|.+|||||++.++..|++.|+.    .+.||.+.+
T Consensus         7 vi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kPVia~v   86 (240)
T 3rst_A            7 VLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSM   86 (240)
T ss_dssp             EEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             EEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            35566666553            35788899988887777889999999999999999999999987    477999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEeeeCCC---------------------Cc--------ccc-CHHHHHHHHHH
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA---------------------GA--------ARG-QADDIRNEADE  212 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~---------------------~~--------~~G-~a~di~~~a~e  212 (234)
                      .|.|+|.|..|+++|+  +|++.|+++++++-..                     .+        +.. +.++.+...+.
T Consensus        87 ~g~a~~gG~~lA~a~D--~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~  164 (240)
T 3rst_A           87 GSMAASGGYYISTAAD--KIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSM  164 (240)
T ss_dssp             EEEEETHHHHHHTTSS--EEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHH
T ss_pred             CCeehHhHHHHHHhCC--eeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHH
Confidence            9999999999999999  4999999999998331                     11        111 23455555667


Q ss_pred             HHHHHHHHHHHHHHhhCCCCC
Q 026750          213 LLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       213 l~~lr~~i~~iya~~TG~~~e  233 (234)
                      ++.+.+.+.+.+++..|.+.+
T Consensus       165 l~~~~~~f~~~Va~~R~l~~~  185 (240)
T 3rst_A          165 VDNSYEGFVDVISKGRGMPKA  185 (240)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHH
Confidence            778888889999888877643

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.16  E-value=7.6e-11  Score=114.99  Aligned_cols=132  Identities=14%  Similarity=0.047  Sum_probs=104.4

Q ss_pred             EEEECcccChhh-------HHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhc---CCCeEEEEcccccc
Q 026750           99 VIFIGQNIDEEF-------SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYH  168 (234)
Q Consensus        99 iIfL~g~Id~e~-------a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~---~~~V~Tv~~G~AaS  168 (234)
                      +|.|+++|....       .+.+.+.|..+..++..+.|.|.+|||||++.++..|++.|+.+   +.||++.+.|.|+|
T Consensus       305 vI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i~~l~~~~kPVia~v~g~Aas  384 (593)
T 3bf0_A          305 VVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS  384 (593)
T ss_dssp             EEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET
T ss_pred             EEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCChHH
Confidence            588999986543       78999999998877778999999999999999999999988764   57999999999999


Q ss_pred             HHHHHHcCCCCCCEEeccCceEeeeCCC------------Ccc-----------------ccCHHHHHHHHHHHHHHHHH
Q 026750          169 LAGFLLAGGEKGNRSAMPLSRIALDSPA------------GAA-----------------RGQADDIRNEADELLRVRDY  219 (234)
Q Consensus       169 ~aslIlaaG~kgkR~a~PnAriMIHqP~------------~~~-----------------~G~a~di~~~a~el~~lr~~  219 (234)
                      +|.+|+++|+  +|++.|++++....+.            -|.                 .++.++.+...+.++.....
T Consensus       385 gG~~iA~aaD--~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~  462 (593)
T 3bf0_A          385 GGYWISTPAN--YIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKR  462 (593)
T ss_dssp             HHHHTTTTCS--EEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC--EEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999  4999999998765421            111                 12334445555666677777


Q ss_pred             HHHHHHHhhCCCC
Q 026750          220 IFKELSRKTDYEG  232 (234)
Q Consensus       220 i~~iya~~TG~~~  232 (234)
                      +.+.+++..|++.
T Consensus       463 f~~~V~~~Rg~~~  475 (593)
T 3bf0_A          463 FITLVADARHSTP  475 (593)
T ss_dssp             HHHHHHHHTTCCH
T ss_pred             HHHHHHHHcCCCH
Confidence            8888888877654

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=97.27  E-value=0.00028  Score=64.79  Aligned_cols=94  Identities=16%  Similarity=0.089  Sum_probs=71.7

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHH----------HHHHHHHHhcCCCeEEEEcccccc
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT----------LAIYDTMQSLKSPVGTHCVGFAYH  168 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ag----------laIyD~m~~~~~~V~Tv~~G~AaS  168 (234)
                      +-|.+|.++++....+...+..-+ +. .-||..++||||..+..+          ..+...+...+.|+.+++.|-|+|
T Consensus       148 ~~~~~G~~~~~~~~Ka~r~~~~A~-~~-~lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~G  225 (339)
T 2f9y_A          148 IRRNFGMPAPEGYRKALRLMQMAE-RF-KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGS  225 (339)
T ss_dssp             HHTGGGCCCHHHHHHHHHHHHHHH-HT-TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEH
T ss_pred             hhhhcCCCCHHHHHHHHHHHHHHh-hc-CCCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCc
Confidence            334556778877766665555333 33 468999999999887554          335566788889999999999999


Q ss_pred             HHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          169 LAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       169 ~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .|+.++++||  .+++.|+|++-+=.|.
T Consensus       226 GGa~~~~~~D--~via~p~A~~~v~~Pe  251 (339)
T 2f9y_A          226 GGALAIGVGD--KVNMLQYSTYSVISPE  251 (339)
T ss_dssp             HHHHTTCCCS--EEEECTTCEEESSCHH
T ss_pred             HHHHHHhccC--eeeecCCCEEEeeccc
Confidence            9999999998  5999999998764443

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=97.10  E-value=0.0032  Score=54.61  Aligned_cols=98  Identities=12%  Similarity=0.072  Sum_probs=74.9

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH--------------HHHHHHHHHhcC
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP--------------TLAIYDTMQSLK  155 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a--------------glaIyD~m~~~~  155 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..              ...+++.|..++
T Consensus        15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~   94 (257)
T 2ej5_A           15 WLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLE   94 (257)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCC
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCC
Confidence            3556544     778888999999998887665566666555    67888742              124566778889


Q ss_pred             CCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          156 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       156 ~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .||.+.+.|.|.+.|.-|+++||  -|++.++++|-+....-|
T Consensus        95 kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  135 (257)
T 2ej5_A           95 KPVVAAVNGAAAGAGMSLALACD--FRLLSEKASFAPAFIHVG  135 (257)
T ss_dssp             SCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCGGGGT
T ss_pred             CCEEEEECccccchhHHHHHhCC--EEEEcCCCEEeCcccccC
Confidence            99999999999999999999999  499999999887655434

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.04  E-value=0.0016  Score=59.36  Aligned_cols=91  Identities=16%  Similarity=0.063  Sum_probs=70.4

Q ss_pred             ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHH----------HHHHHHHHhcCCCeEEEEccccccHHH
Q 026750          102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT----------LAIYDTMQSLKSPVGTHCVGFAYHLAG  171 (234)
Q Consensus       102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ag----------laIyD~m~~~~~~V~Tv~~G~AaS~as  171 (234)
                      .+|.++++.+..+...+..-+ .. .-||..++||||..+..+          ..+...+...+.|+.+++.|-|.|.|+
T Consensus       137 ~~G~~~~~~~~Ka~r~~~~A~-~~-~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa  214 (327)
T 2f9i_A          137 NFGMAHPEGYRKALRLMKQAE-KF-NRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGA  214 (327)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHH-HT-TCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHh-hc-CCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHH
Confidence            556678877766665555333 33 368999999999887654          235566788889999999999999999


Q ss_pred             HHHcCCCCCCEEeccCceEeeeCCC
Q 026750          172 FLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       172 lIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .++++|+  .+++.|+|++.+=.|.
T Consensus       215 ~~~~~~D--~via~~~A~~~v~~pe  237 (327)
T 2f9i_A          215 LGIGIAN--KVLMLENSTYSVISPE  237 (327)
T ss_dssp             HTTCCCS--EEEEETTCBCBSSCHH
T ss_pred             HHHHCCC--EEEEcCCceEeecCch
Confidence            9999998  5999999998765443

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.03  E-value=0.0017  Score=63.05  Aligned_cols=91  Identities=20%  Similarity=0.162  Sum_probs=73.7

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL  173 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI  173 (234)
                      |.++++.+.....-+..-+.  ..-||..++|+||          |-+.++-.+.+.+.....|+.|++.|-|+|.|.+.
T Consensus       361 G~l~~~~a~Kaar~i~~a~~--~~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~a  438 (548)
T 2bzr_A          361 GCLDINASEKAARFVRTCDC--FNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCV  438 (548)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh--cCCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHH
Confidence            56777766655543333222  2469999999999          88899999999999999999999999999999988


Q ss_pred             HcC----CCCCCEEeccCceEeeeCCCCc
Q 026750          174 LAG----GEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       174 laa----G~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +++    ++  ..++.|||++.+-.|.+.
T Consensus       439 m~~~~~~~d--~~~awp~a~i~Vmgpega  465 (548)
T 2bzr_A          439 MGSKDMGCD--VNLAWPTAQIAVMGASGA  465 (548)
T ss_dssp             TTCGGGTCS--EEEECTTCEEESSCHHHH
T ss_pred             hccccCCCC--EEEEcCCCEEEecCHHHH
Confidence            876    44  589999999999998764

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=97.02  E-value=0.004  Score=54.01  Aligned_cols=98  Identities=14%  Similarity=0.176  Sum_probs=76.8

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHH-------------HHHHHHHHhcCC
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------LAIYDTMQSLKS  156 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~ag-------------laIyD~m~~~~~  156 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..-             +.+++.|..++.
T Consensus        17 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k   96 (258)
T 2pbp_A           17 IIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSIVKT   96 (258)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHHHHHHHTCCS
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence            3556544     778888999999998887655566666555    788887431             145678889999


Q ss_pred             CeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       157 ~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ||.+.+.|.|.+.|.-|+++||  -|++.++++|-+-...-|
T Consensus        97 PvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G  136 (258)
T 2pbp_A           97 PMIAAVNGLALGGGFELALSCD--LIVASSAAEFGFPEVNLG  136 (258)
T ss_dssp             CEEEEECSEEETHHHHHHHTSS--EEEEETTCEEECGGGGGT
T ss_pred             CEEEEEcCEEEhHHHHHHHhCC--EEEEcCCCEEECcccccC
Confidence            9999999999999999999999  499999999887665544

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=96.96  E-value=0.0033  Score=54.83  Aligned_cols=96  Identities=11%  Similarity=0.100  Sum_probs=75.2

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe-----CCCCCccHHH-------------------HHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPTL-------------------AIYD  149 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-----SPGG~v~agl-------------------aIyD  149 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=.     |.|+|+..-.                   .++.
T Consensus        16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (263)
T 3lke_A           16 YITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVL   95 (263)
T ss_dssp             EEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence            4566665     788899999999998887665666666555     7777764322                   3566


Q ss_pred             HHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       150 ~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .|..++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...
T Consensus        96 ~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~  140 (263)
T 3lke_A           96 EIFTSPKVTVALINGYAYGGGFNMMLACD--RRIALRRAKFLENFHK  140 (263)
T ss_dssp             HHHTCSSEEEEEECSEEETHHHHGGGGSS--EEEEETTCEEECCHHH
T ss_pred             HHHhCCCCEEEEECCEeeHHHHHHHHHCC--EEEEcCCCEEeCchHh
Confidence            77888999999999999999999999999  4999999998765433

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=96.88  E-value=0.0058  Score=52.64  Aligned_cols=91  Identities=12%  Similarity=0.216  Sum_probs=68.7

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEE-e----CCCCCccH----------------HHHHHHHHHhcCCCeEEEEcc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYI-N----GPGGDVTP----------------TLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-N----SPGG~v~a----------------glaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ++.++..++.+.|..++.++..+-|.|.= +    |.|+|+..                ...+++.|..++.||.+.+.|
T Consensus        24 l~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  103 (250)
T 2a7k_A           24 FSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDG  103 (250)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            67888899999998887655444444443 2    44676632                123556778889999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|.+.|.-|+++||  -|++.++++|-+-...-|
T Consensus       104 ~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  135 (250)
T 2a7k_A          104 YAIGMGFQFALMFD--QRLMASTANFVMPELKHG  135 (250)
T ss_dssp             EEETHHHHHHTTSS--EEEEETTCEEECCGGGGT
T ss_pred             eEeHHHHHHHHhCC--EEEEcCCCEEeCcccccC
Confidence            99999999999999  499999999887655434

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=96.87  E-value=0.007  Score=52.22  Aligned_cols=90  Identities=12%  Similarity=0.104  Sum_probs=69.9

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH------------------HHHHHHHHHhcCCCeEEEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDTMQSLKSPVGTHC  162 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a------------------glaIyD~m~~~~~~V~Tv~  162 (234)
                      .++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..                  ...+++.|..++.||.+.+
T Consensus        22 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav  101 (253)
T 1uiy_A           22 PLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAV  101 (253)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            3678888899999988887655565655555    77888732                  1234456778899999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .|.|.+.|.-|+++||  -|++.++++|-+-...
T Consensus       102 ~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~  133 (253)
T 1uiy_A          102 NGPAVAGGAGLALACD--LVVMDEEARLGYTEVK  133 (253)
T ss_dssp             CSCEETHHHHHHHTSS--EEEEETTCEEECCHHH
T ss_pred             CCeeeHHHHHHHHhCC--EEEEcCCcEEeCcccc
Confidence            9999999999999999  4999999998775443

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=96.70  E-value=0.0066  Score=52.74  Aligned_cols=92  Identities=13%  Similarity=0.119  Sum_probs=70.7

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe-----CCCCCccH---------------HHHHHHHHHhcCCCeEEEEcc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP---------------TLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-----SPGG~v~a---------------glaIyD~m~~~~~~V~Tv~~G  164 (234)
                      .++.++..++.+.|..++.++..+-|.|.-+     |.|+|+..               ...+++.|..++.||.+.+.|
T Consensus        27 al~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  106 (260)
T 1sg4_A           27 SLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAING  106 (260)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            3778888899999988876655566666555     55777642               124566778889999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEec--cCceEeeeCCCCc
Q 026750          165 FAYHLAGFLLAGGEKGNRSAM--PLSRIALDSPAGA  198 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~--PnAriMIHqP~~~  198 (234)
                      .|.+.|.-|+++||  -|++.  ++++|-+-...-|
T Consensus       107 ~a~GgG~~lalacD--~~ia~~~~~a~f~~pe~~~G  140 (260)
T 1sg4_A          107 ACPAGGCLVALTCD--YRILADNPRYCIGLNETQLG  140 (260)
T ss_dssp             EBCHHHHHHHTTSS--EEEEECCTTCCBSCCGGGGT
T ss_pred             eeehHHHHHHHhCC--EEEEecCCCCEEeCchhhhC
Confidence            99999999999999  49999  8898876544433

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=96.69  E-value=0.011  Score=52.44  Aligned_cols=98  Identities=15%  Similarity=0.128  Sum_probs=73.7

Q ss_pred             EEEECc-----ccChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH----------------HHHHHHHHHh
Q 026750           99 VIFIGQ-----NIDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP----------------TLAIYDTMQS  153 (234)
Q Consensus        99 iIfL~g-----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a----------------glaIyD~m~~  153 (234)
                      +|.|+.     .++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..                ...+++.|..
T Consensus        45 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (287)
T 2vx2_A           45 NIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRN  124 (287)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHh
Confidence            455664     3778888999999988876554454544433    57787632                1245667788


Q ss_pred             cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       125 ~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~lG  167 (287)
T 2vx2_A          125 HPVPVIAMVNGLATAAGCQLVASCD--IAVASDKSSFATPGVNVG  167 (287)
T ss_dssp             CSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCGGGGT
T ss_pred             CCCCEEEEECCEEEcHHHHHHHhCC--EEEEcCCCEEECchhhhC
Confidence            8999999999999999999999999  499999999887655444

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=96.63  E-value=0.012  Score=51.46  Aligned_cols=98  Identities=13%  Similarity=0.137  Sum_probs=76.3

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCC-----CCCccH----------------HHHHHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-----GGDVTP----------------TLAIYDTMQ  152 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-----GG~v~a----------------glaIyD~m~  152 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+.+     |+|+..                ...+++.|.
T Consensus        25 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  104 (273)
T 2uzf_A           25 KVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIR  104 (273)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCCCTHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHH
Confidence            4567655     77888899999999888766566666665544     777642                125667788


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .++.||.+.+.|.|.+.|.-|++++|  -|++.++++|.+....-|
T Consensus       105 ~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  148 (273)
T 2uzf_A          105 IIPKPVIAMVKGYAVGGGNVLNVVCD--LTIAADNAIFGQTGPKVG  148 (273)
T ss_dssp             HSSSCEEEEECEEEETHHHHHHHHSS--EEEEETTCEEECCGGGTT
T ss_pred             hCCCCEEEEECCEEeehhHHHHHhCC--EEEEcCCCEEECchhhhC
Confidence            89999999999999999999999999  499999999887655444

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=96.59  E-value=0.012  Score=50.69  Aligned_cols=88  Identities=9%  Similarity=-0.031  Sum_probs=68.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHHH----------HHHHHHHhcCCCeEEEEccccccHHH
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL----------AIYDTMQSLKSPVGTHCVGFAYHLAG  171 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~agl----------aIyD~m~~~~~~V~Tv~~G~AaS~as  171 (234)
                      ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..-.          .+++.|..++.||.+.+.|.|.+.|.
T Consensus        27 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~  106 (243)
T 2q35_A           27 FSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGL  106 (243)
T ss_dssp             SCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEECSEEETHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhhHHHHHHHHHHhCCCCEEEEEcCccccchH
Confidence            677888889888888876554454444433    6777775432          24677888999999999999999999


Q ss_pred             HHHcCCCCCCEEeccCceEeeeCC
Q 026750          172 FLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       172 lIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      -|++++|  -|++.++++|-+-..
T Consensus       107 ~lalacD--~ria~~~a~f~~pe~  128 (243)
T 2q35_A          107 LLGLYAD--FVVFSQESVYATNFM  128 (243)
T ss_dssp             HHHHTSS--EEEEESSSEEECCHH
T ss_pred             HHHHhCC--EEEEeCCCEEECCcc
Confidence            9999999  499999998876443

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=96.56  E-value=0.017  Score=50.39  Aligned_cols=90  Identities=11%  Similarity=0.090  Sum_probs=67.6

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHH--------------------------HHHHHHHHhc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT--------------------------LAIYDTMQSL  154 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~ag--------------------------laIyD~m~~~  154 (234)
                      .++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..-                          ..+++.|..+
T Consensus        27 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  106 (275)
T 1dci_A           27 AMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKC  106 (275)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence            3778888899998888876544444444322    667776321                          1245567788


Q ss_pred             CCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       155 ~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...
T Consensus       107 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~  146 (275)
T 1dci_A          107 PKPVIAAIHGGCIGGGVDLISACD--IRYCTQDAFFQVKEVD  146 (275)
T ss_dssp             SSCEEEEECSEEETHHHHHHTTSS--EEEEETTCEEECCGGG
T ss_pred             CCCEEEEECCeeeHHHHHHHHhCC--EEEEeCCCEEeCcccc
Confidence            999999999999999999999999  4999999998776544

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=96.55  E-value=0.012  Score=51.39  Aligned_cols=98  Identities=17%  Similarity=0.176  Sum_probs=74.6

Q ss_pred             EEEECc-----ccChhhHHHHHHHHhcccccCCCCceEEEEeCC-----CCCccH---------------HHHHHHHHHh
Q 026750           99 VIFIGQ-----NIDEEFSNQILATMLYLDSVDDSKRVYMYINGP-----GGDVTP---------------TLAIYDTMQS  153 (234)
Q Consensus        99 iIfL~g-----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-----GG~v~a---------------glaIyD~m~~  153 (234)
                      +|.|+.     .++.++..++.+.|..++.++..+-|.|.=+.|     |+|+..               ...+++.|..
T Consensus        24 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  103 (272)
T 1hzd_A           24 VLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIAN  103 (272)
T ss_dssp             EEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHh
Confidence            355653     477888899999998888765555555554443     677632               1245667888


Q ss_pred             cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       104 ~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  146 (272)
T 1hzd_A          104 LPVPTIAAIDGLALGGGLELALACD--IRVAASSAKMGLVETKLA  146 (272)
T ss_dssp             CSSCEEEEESEEEETHHHHHHHHSS--EEEEETTCEEECCGGGGT
T ss_pred             CCCCEEEEeCceEEecHHHHHHhCC--EEEEcCCCEEeCchhccC
Confidence            8999999999999999999999999  599999999888766544

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=96.35  E-value=0.012  Score=51.09  Aligned_cols=98  Identities=15%  Similarity=0.015  Sum_probs=73.5

Q ss_pred             EEEECc----ccChhhHHHHHHHHhcccccCCCCceEEEE-e----CCCCCccH--------------H-HHHHHHHHhc
Q 026750           99 VIFIGQ----NIDEEFSNQILATMLYLDSVDDSKRVYMYI-N----GPGGDVTP--------------T-LAIYDTMQSL  154 (234)
Q Consensus        99 iIfL~g----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-N----SPGG~v~a--------------g-laIyD~m~~~  154 (234)
                      +|.|+.    .++.++..++.+.|..++.++..+-|.|.- +    |.|+|+..              . ..+++.|..+
T Consensus        21 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (265)
T 2ppy_A           21 EIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARS  100 (265)
T ss_dssp             EEEECSSTTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcC
Confidence            355654    466788889999998888655555555554 2    44777642              1 3556778888


Q ss_pred             CCCeEEEEccccccHHHHHHcCCCCCCEEeccCc-eEeeeCCCCc
Q 026750          155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLS-RIALDSPAGA  198 (234)
Q Consensus       155 ~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnA-riMIHqP~~~  198 (234)
                      +.||.+.+.|.|.+.|.-|+++||  -|++.+++ +|-+-...-|
T Consensus       101 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~ag~f~~pe~~~G  143 (265)
T 2ppy_A          101 PQVYIACLEGHTVGGGLEMALACD--LRFMGDEAGKIGLPEVSLG  143 (265)
T ss_dssp             SSEEEEEECSEEETHHHHHHHTSS--EEEEETTCCCEECCGGGGT
T ss_pred             CCCEEEEECCEEeeHHHHHHHhCC--EEEEeCCCCEEECcccccC
Confidence            999999999999999999999999  49999999 8877554434

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=96.34  E-value=0.025  Score=49.09  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=72.8

Q ss_pred             EEEECcc----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH----------------HHHHHHHHHhc
Q 026750           99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP----------------TLAIYDTMQSL  154 (234)
Q Consensus        99 iIfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a----------------glaIyD~m~~~  154 (234)
                      +|.|+.+    ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..                ...+++.|..+
T Consensus        18 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (261)
T 3pea_A           18 VATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKC   97 (261)
T ss_dssp             EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhC
Confidence            4556654    778888899999988886554444444322    45666521                12367778899


Q ss_pred             CCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       155 ~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus        98 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  139 (261)
T 3pea_A           98 SKPVIAAIHGAALGGGLEFAMSCH--MRFATESAKLGLPELTLG  139 (261)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCGGGGT
T ss_pred             CCCEEEEECCeeehHHHHHHHhCC--EEEEcCCCEEECcccccC
Confidence            999999999999999999999999  499999999887655444

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=96.26  E-value=0.035  Score=48.44  Aligned_cols=98  Identities=14%  Similarity=0.097  Sum_probs=71.9

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH-----------------HHHHHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-----------------TLAIYDTMQ  152 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a-----------------glaIyD~m~  152 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=.    |-|+|+..                 ...++..|.
T Consensus        17 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   96 (266)
T 3fdu_A           17 TLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAA   96 (266)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHH
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            3556654     677888888888888876554444433311    33444432                 234667888


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus        97 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  140 (266)
T 3fdu_A           97 RLSKPLIIAVKGVAIGIGVTILLQADL--VFADNTALFQIPFVSLG  140 (266)
T ss_dssp             HCCSCEEEEECSEEETHHHHGGGGCSE--EEECTTCEEECCTTTTT
T ss_pred             hCCCCEEEEECCEEehHHHHHHHhCCE--EEEcCCCEEECchhhhC
Confidence            999999999999999999999999994  99999999887665544

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=96.25  E-value=0.029  Score=49.21  Aligned_cols=95  Identities=12%  Similarity=0.124  Sum_probs=69.4

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCcc----------HHHHHHHHHHhcCCCeE
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVT----------PTLAIYDTMQSLKSPVG  159 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~----------aglaIyD~m~~~~~~V~  159 (234)
                      +|.|+.+     ++.++..++.+.|..++.+ ..+-|.|.    .=|.|+|+.          ....++..|..++.||.
T Consensus        33 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvI  111 (264)
T 3he2_A           33 TIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVV  111 (264)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEE
Confidence            4556544     6788888999999888753 34444332    235666764          23457778888999999


Q ss_pred             EEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       160 Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +.+.|.|.+.|.-|+++||  -|++.++++|.+-...
T Consensus       112 Aav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~  146 (264)
T 3he2_A          112 GAINGPAIGAGLQLAMQCD--LRVVAPDAFFQFPTSK  146 (264)
T ss_dssp             EEECSCEETHHHHHHHHSS--EEEECTTCEEECTHHH
T ss_pred             EEECCcEEcchhHHHHhCC--EEEEcCCCEEECcccc
Confidence            9999999999999999999  4999999997764433

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=96.24  E-value=0.028  Score=48.88  Aligned_cols=89  Identities=9%  Similarity=-0.033  Sum_probs=68.1

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH--------------------HHHHHHHHHhcCCCeEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP--------------------TLAIYDTMQSLKSPVGT  160 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a--------------------glaIyD~m~~~~~~V~T  160 (234)
                      .++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..                    ...+++.|..++.||.+
T Consensus        26 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  105 (269)
T 1nzy_A           26 ALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLA  105 (269)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            3678888899999988886655555555433    67777631                    12345567788999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      .+.|.|.+.|.-|+++||  -|++.++++|-+-..
T Consensus       106 av~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~  138 (269)
T 1nzy_A          106 AINGVAAGGGLGISLASD--MAICADSAKFVCAWH  138 (269)
T ss_dssp             EECSEEETHHHHHHHHSS--EEEEETTCEEECCHH
T ss_pred             EECCeeecHHHHHHHhCC--EEEecCCCEEeCccc
Confidence            999999999999999999  499999999876543

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=96.16  E-value=0.034  Score=48.30  Aligned_cols=94  Identities=12%  Similarity=0.042  Sum_probs=70.8

Q ss_pred             EEECcc----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCcc-----H------------HHHHHHHHHhc
Q 026750          100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVT-----P------------TLAIYDTMQSL  154 (234)
Q Consensus       100 IfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~-----a------------glaIyD~m~~~  154 (234)
                      |.|+.+    ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+.     .            ...+++.|..+
T Consensus        24 itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  103 (264)
T 1wz8_A           24 ITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNF  103 (264)
T ss_dssp             EEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccccccccccchHHHHHHHHHHHHHHHHHHcC
Confidence            445544    778888899999988876555555555444    7788873     1            11345567788


Q ss_pred             CCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       155 ~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      +.||.+.+.|.|.+.|.-|+++||  -|++.++++|-+-..
T Consensus       104 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  142 (264)
T 1wz8_A          104 PRPVVAAVEKVAVGAGLALALAAD--IAVVGKGTRLLDGHL  142 (264)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCHH
T ss_pred             CCCEEEEECCeeechhHHHHHhCC--EEEecCCCEEeCchh
Confidence            999999999999999999999999  499999999876543

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=96.12  E-value=0.04  Score=48.38  Aligned_cols=88  Identities=15%  Similarity=0.082  Sum_probs=66.4

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccHH-------------------HHHHHHHHhcCCCeEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPT-------------------LAIYDTMQSLKSPVGT  160 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~ag-------------------laIyD~m~~~~~~V~T  160 (234)
                      ++.++..++.+.|..++.++..   .|.|-      |.|+|+..-                   ..+++.|..++.||.+
T Consensus        50 l~~~~~~~L~~al~~~~~d~~v---~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  126 (280)
T 2f6q_A           50 INTEMYHEIMRALKAASKDDSI---ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA  126 (280)
T ss_dssp             BCHHHHHHHHHHHHHHHHSSCS---EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCE---EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            6778888999988888764433   44443      677776421                   1345677888999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+.|.|.+.|.-|++++|  -|++.++++|-+-...-|
T Consensus       127 av~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~G  162 (280)
T 2f6q_A          127 VVNGPAVGISVTLLGLFD--AVYASDRATFHTPFSHLG  162 (280)
T ss_dssp             EECSCEETHHHHGGGGCS--EEEEETTCEEECCTGGGT
T ss_pred             EECCeeehHHHHHHHhCC--EEEECCCcEEECchHhhC
Confidence            999999999999999999  499999999887655444

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=96.08  E-value=0.0067  Score=52.70  Aligned_cols=97  Identities=11%  Similarity=0.077  Sum_probs=71.9

Q ss_pred             EEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHHH-------------HHHHHHHhcCCC
Q 026750          100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL-------------AIYDTMQSLKSP  157 (234)
Q Consensus       100 IfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~agl-------------aIyD~m~~~~~~  157 (234)
                      |.|+.+     ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..-.             ..++.|..++.|
T Consensus        20 itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP   99 (260)
T 1mj3_A           20 IQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKP   99 (260)
T ss_dssp             EEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSC
T ss_pred             EEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHHHHHHHHHHHHHHhCCCC
Confidence            556543     778888999999988887555555544433    5778774310             123456677899


Q ss_pred             eEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          158 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       158 V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |.+.+.|.|.+.|.-|++++|  -|++.++++|-+....-|
T Consensus       100 vIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  138 (260)
T 1mj3_A          100 VIAAVNGYALGGGCELAMMCD--IIYAGEKAQFGQPEILLG  138 (260)
T ss_dssp             EEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGGGGT
T ss_pred             EEEEECCEEEeHHHHHHHhCC--EEEEcCCCEEeCcccccC
Confidence            999999999999999999999  499999999987665533

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=96.05  E-value=0.02  Score=56.05  Aligned_cols=98  Identities=12%  Similarity=0.053  Sum_probs=72.9

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEcccccc
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYH  168 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS  168 (234)
                      +...+|.++++.+.....-+..-+.  ..-||..++|.||          |-..++-.+.+.+...+.|+.|++.|-+.|
T Consensus       380 ~~~~~G~l~~~~a~Kaarfi~~c~~--~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~G  457 (587)
T 1pix_A          380 SVGIGGKLYRQGLVKMNEFVTLCAR--DRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTA  457 (587)
T ss_dssp             CCEETTEECHHHHHHHHHHHHHHHH--TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEET
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhhc--CCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCcc
Confidence            3446788888766544333332222  2468999999999          567778889999999999999999999999


Q ss_pred             HHHHHHcC----CCCCCEEeccCceEeeeCCCCc
Q 026750          169 LAGFLLAG----GEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       169 ~aslIlaa----G~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|.+-+++    +.+...++.|+|++-+=.|.+.
T Consensus       458 gg~~am~~~~~~~~~d~~~a~p~A~~~Vm~pega  491 (587)
T 1pix_A          458 AAHYVLGGPQGNDTNAFSIGTAATEIAVMNGETA  491 (587)
T ss_dssp             THHHHTTCTTCTTTEEEEEECTTCEEESSCHHHH
T ss_pred             HHHHHhcCcccCcccceeeeccCCeEecCCHHHH
Confidence            99888875    3002478999999988777643

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.01  E-value=0.01  Score=57.37  Aligned_cols=91  Identities=21%  Similarity=0.258  Sum_probs=68.7

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL  173 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI  173 (234)
                      |.++++.+......+...+.  ..-||..++|+||          |.+.++-.+.+.+...+.|+.|++.|-|+|.|.+-
T Consensus       344 G~~~~~~~~Kaar~i~~a~~--~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~a  421 (527)
T 1vrg_A          344 GVLDIDSSDKAARFIRFLDA--FNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIA  421 (527)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhh--cCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHH
Confidence            56777766554444433332  2468999999999          44566667888888889999999999999998888


Q ss_pred             HcC----CCCCCEEeccCceEeeeCCCCc
Q 026750          174 LAG----GEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       174 laa----G~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +++    ++  ..++.|+|++-+=.|.+.
T Consensus       422 m~~~~~~~d--~~~a~p~a~~~Vm~pega  448 (527)
T 1vrg_A          422 MGSKHLGAD--MVLAWPSAEIAVMGPEGA  448 (527)
T ss_dssp             TTCGGGTCS--EEEECTTCEEESSCHHHH
T ss_pred             hcCCCCCCC--EEEEcCCCeEEecCHHHH
Confidence            776    44  589999999988777654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=95.99  E-value=0.0093  Score=57.56  Aligned_cols=91  Identities=19%  Similarity=0.180  Sum_probs=70.3

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL  173 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI  173 (234)
                      |.++++.+.....-+...+.  ..-||..++|.||          |-+.++-.+.+.+...+.|+.|++.|-++|.|.+-
T Consensus       340 G~~~~~~a~Kaar~i~~~~~--~~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~a  417 (523)
T 1on3_A          340 GCLDINASDKAAEFVNFCDS--FNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLA  417 (523)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHh--cCCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHH
Confidence            56777765544433332232  2468999999998          66778888888999999999999999999999888


Q ss_pred             HcC----CCCCCEEeccCceEeeeCCCCc
Q 026750          174 LAG----GEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       174 laa----G~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ++.    ++  ..++.|+|++-+=.|.+.
T Consensus       418 m~~~~~~~d--~~~a~p~a~~~Vm~pega  444 (523)
T 1on3_A          418 MCNRDLGAD--AVYAWPSAEIAVMGAEGA  444 (523)
T ss_dssp             TTCGGGTCS--EEEECTTCEEESSCHHHH
T ss_pred             hcccCCCCC--EEEEcCCCeEEecCHHHH
Confidence            876    44  589999999988777654

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=95.97  E-value=0.02  Score=49.50  Aligned_cols=92  Identities=10%  Similarity=0.091  Sum_probs=69.7

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCccH----------------HHHHHHHHHhcCCCeEEEEcc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTP----------------TLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~a----------------glaIyD~m~~~~~~V~Tv~~G  164 (234)
                      .++.++..++.+.|..++.++..+-|.|.    .=|.|+|+..                ...++..|..++.||.+.+.|
T Consensus        29 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  108 (256)
T 3qmj_A           29 AFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNG  108 (256)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            46778888899888888765544444442    3455666533                234677888999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|.+.|.-|++++|  -|++.++++|-+....-|
T Consensus       109 ~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G  140 (256)
T 3qmj_A          109 LGVGIGATILGYAD--LAFMSSTARLKCPFTSLG  140 (256)
T ss_dssp             EEETHHHHGGGGCS--EEEEETTCEEECCGGGC-
T ss_pred             eehhHHHHHHHhCC--EEEEeCCCEEECcccccC
Confidence            99999999999999  499999999887655544

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=95.95  E-value=0.031  Score=48.37  Aligned_cols=87  Identities=14%  Similarity=0.218  Sum_probs=65.7

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEE-eCC-----CCCccH--------------HHHHHHHHHhcCCCeEEEEcc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYI-NGP-----GGDVTP--------------TLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-NSP-----GG~v~a--------------glaIyD~m~~~~~~V~Tv~~G  164 (234)
                      .++.++..++.+.|..++.++ .+-|.|.= +.|     |+|+..              ...+++.|..++.||.+.+.|
T Consensus        27 al~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  105 (261)
T 1ef8_A           27 ALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEG  105 (261)
T ss_dssp             CCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            356778888888888887544 44444433 333     666632              235677888899999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDS  194 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHq  194 (234)
                      .|.+.|.-|+++||  -|++.++++|-+-.
T Consensus       106 ~a~GgG~~lalacD--~ria~~~a~f~~pe  133 (261)
T 1ef8_A          106 SVWGGAFEMIMSSD--LIIAASTSTFSMTP  133 (261)
T ss_dssp             EEETHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             EEEeHhHHHHHhCC--EEEecCCCEEeCch
Confidence            99999999999999  49999999887643

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=95.87  E-value=0.011  Score=51.49  Aligned_cols=92  Identities=13%  Similarity=0.165  Sum_probs=68.0

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCccHH-------------HHHHHHHHhcCCCeEEEEccccc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPT-------------LAIYDTMQSLKSPVGTHCVGFAY  167 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~ag-------------laIyD~m~~~~~~V~Tv~~G~Aa  167 (234)
                      .++.++..++.+.|..++.++..+-|.|.    .=|.|+|+..-             ..+++.|..++.||.+.+.|.|.
T Consensus        33 al~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  112 (263)
T 3moy_A           33 ALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYAL  112 (263)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEECBEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence            36778888899988888765544433331    23445555321             23678888999999999999999


Q ss_pred             cHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          168 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       168 S~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.|.-|++++|-  |++.++++|-+-...-|
T Consensus       113 GgG~~lalacD~--~ia~~~a~f~~pe~~~G  141 (263)
T 3moy_A          113 GGGCELAMLCDL--VIAADTARFGQPEITLG  141 (263)
T ss_dssp             THHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             hHHHHHHHHCCE--EEecCCCEEeCcccccC
Confidence            999999999994  99999999887554433

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=95.84  E-value=0.049  Score=47.30  Aligned_cols=98  Identities=15%  Similarity=0.146  Sum_probs=71.4

Q ss_pred             EEEECcc----cChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCccH---------------------HHHHHH
Q 026750           99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTP---------------------TLAIYD  149 (234)
Q Consensus        99 iIfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~a---------------------glaIyD  149 (234)
                      +|.|+.+    ++.++..++.+.|..++.++..+-|.|.    .=|.|+|+..                     ...+++
T Consensus        19 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (263)
T 3l3s_A           19 TLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALML   98 (263)
T ss_dssp             EEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHH
Confidence            3556654    7788888999999888765444433331    2345555421                     134667


Q ss_pred             HHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       150 ~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|..++.||.+.+.|.|.+.|.-|++++|  -|++.++++|-+-...-|
T Consensus        99 ~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  145 (263)
T 3l3s_A           99 DLAHCPKPTIALVEGIATAAGLQLMAACD--LAYASPAARFCLPGVQNG  145 (263)
T ss_dssp             HHHTCSSCEEEEESSEEETHHHHHHHHSS--EEEECTTCEEECCTTTTT
T ss_pred             HHHhCCCCEEEEECCEEEHHHHHHHHHCC--EEEecCCCEEeCchhccC
Confidence            78888999999999999999999999999  499999999887555444

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=95.83  E-value=0.029  Score=49.21  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=67.4

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEE-----eCC-----CCCccH----------------HHHHHHHHHhcCCCe
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYI-----NGP-----GGDVTP----------------TLAIYDTMQSLKSPV  158 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I-----NSP-----GG~v~a----------------glaIyD~m~~~~~~V  158 (234)
                      .++.++..++.+.|..++.++..+-|.|.=     ..+     |+|+..                ...+++.|..++.||
T Consensus        33 al~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  112 (275)
T 4eml_A           33 AFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVV  112 (275)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSSEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCCE
Confidence            367788888999888887665555555444     333     556522                234677888999999


Q ss_pred             EEEEccccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750          159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDS  194 (234)
Q Consensus       159 ~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHq  194 (234)
                      .+.+.|.|.+.|.-|+++||  -|++.++++|.+-.
T Consensus       113 IAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  146 (275)
T 4eml_A          113 IALVAGYAIGGGHVLHLVCD--LTIAADNAIFGQTG  146 (275)
T ss_dssp             EEEECSEEETHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             EEEECCeeehHHHHHHHhCC--EEEEcCCCEEECcc
Confidence            99999999999999999999  49999999987743

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=95.81  E-value=0.032  Score=49.13  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=71.4

Q ss_pred             EEEECcc----cChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccH---------------HHHHHHHHHhcC
Q 026750           99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP---------------TLAIYDTMQSLK  155 (234)
Q Consensus        99 iIfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~a---------------glaIyD~m~~~~  155 (234)
                      +|.|+.+    ++.++..++.+.|..++.++..+-|.|.=    =|.|+|+..               ...+++.|..++
T Consensus        36 ~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (277)
T 4di1_A           36 TLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIP  115 (277)
T ss_dssp             EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCC
Confidence            4566665    77888889999998887654444333321    133444422               124667788899


Q ss_pred             CCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          156 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       156 ~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       116 kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~lG  156 (277)
T 4di1_A          116 KPTVAAVTGYALGAGLTLALAAD--WRVSGDNVKFGATEILAG  156 (277)
T ss_dssp             SCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGGGGT
T ss_pred             CCEEEEECCeEehhHHHHHHhCC--EEEEcCCCEEECcccccC
Confidence            99999999999999999999999  499999999887655444

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=95.78  E-value=0.038  Score=48.90  Aligned_cols=96  Identities=15%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCC-----CCCccH-----------------HHHHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-----GGDVTP-----------------TLAIYDTM  151 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-----GG~v~a-----------------glaIyD~m  151 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+.+     |+|+..                 ...+++.|
T Consensus        40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l  119 (289)
T 3t89_A           40 KITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQI  119 (289)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHH
Confidence            3556543     67788889999998888765555555544444     666632                 22467778


Q ss_pred             HhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       152 ~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      ..++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-.+.
T Consensus       120 ~~~~kPvIAaV~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~  162 (289)
T 3t89_A          120 RTCPKPVVAMVAGYSIGGGHVLHMMCD--LTIAADNAIFGQTGPK  162 (289)
T ss_dssp             HHCSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCHHH
T ss_pred             HcCCCCEEEEECCEeehHHHHHHHhCC--EEEEeCCCEEeccccc
Confidence            899999999999999999999999999  4999999998875443

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=95.73  E-value=0.056  Score=47.18  Aligned_cols=98  Identities=12%  Similarity=0.089  Sum_probs=70.4

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH------------------HHHHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDTM  151 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a------------------glaIyD~m  151 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+    |-|+|+..                  ...++..|
T Consensus        16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l   95 (268)
T 3i47_A           16 LLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSI   95 (268)
T ss_dssp             EEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHH
Confidence            3556543     778888999999988876554444433222    34455432                  12356678


Q ss_pred             HhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       152 ~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ..++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus        96 ~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  140 (268)
T 3i47_A           96 SQSPKPTIAMVQGAAFGGGAGLAAACD--IAIASTSARFCFSEVKLG  140 (268)
T ss_dssp             HHCSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCGGGGT
T ss_pred             HhCCCCEEEEECCEEEhHhHHHHHhCC--EEEEcCCCEEECcccccC
Confidence            888999999999999999999999999  499999999876544433

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=95.73  E-value=0.039  Score=47.94  Aligned_cols=98  Identities=15%  Similarity=0.085  Sum_probs=70.8

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCccH--------------------HHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTP--------------------TLAIYD  149 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~a--------------------glaIyD  149 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.    .=|.|+|+..                    ...++.
T Consensus        23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (267)
T 3oc7_A           23 RLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMR  102 (267)
T ss_dssp             EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHH
Confidence            3556554     7788889999999888876555544442    2355666533                    123556


Q ss_pred             HHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       150 ~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|..++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       103 ~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G  149 (267)
T 3oc7_A          103 AIVESRLPVIAAIDGHVRAGGFGLVGACDI--AVAGPRSSFALTEARIG  149 (267)
T ss_dssp             HHHHCSSCEEEEECSEEETTHHHHHHHSSE--EEECTTCEEECCGGGGT
T ss_pred             HHHhCCCCEEEEEcCeecccchHHHHHCCE--EEEcCCCEEeCcccccC
Confidence            677889999999999999999999999994  99999999876544433

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=95.72  E-value=0.021  Score=49.44  Aligned_cols=96  Identities=20%  Similarity=0.226  Sum_probs=70.4

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH---------HHHHHHHHHhcCCCe
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP---------TLAIYDTMQSLKSPV  158 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a---------glaIyD~m~~~~~~V  158 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|  .+-|      +|+..         ...+++.|..++.||
T Consensus        18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPv   95 (255)
T 3p5m_A           18 RIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLL--TGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPV   95 (255)
T ss_dssp             EEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEE--EESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEE--ECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCE
Confidence            3555543     678888899999988876554443333  3333      44432         236778899999999


Q ss_pred             EEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       159 ~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+.+.|.|.+.|.-|++++|  -|++.++++|.+-...-|
T Consensus        96 IAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G  133 (255)
T 3p5m_A           96 IAGVHGAAVGFGCSLALACD--LVVAAPASYFQLAFTRVG  133 (255)
T ss_dssp             EEEECSEEETHHHHHHHHSS--EEEECTTCEEECGGGGGT
T ss_pred             EEEeCCeehhhHHHHHHHCC--EEEEcCCcEEeCcccccC
Confidence            99999999999999999999  499999999877554433

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=95.70  E-value=0.056  Score=47.26  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=72.7

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH-------------------HHHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------------TLAIYDT  150 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a-------------------glaIyD~  150 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..                   ...+++.
T Consensus        29 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (279)
T 3g64_A           29 TVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRA  108 (279)
T ss_dssp             EEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHH
Confidence            4667654     778888999999998887655554444322    34666532                   1245667


Q ss_pred             HHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       151 m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |..++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       109 l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G  154 (279)
T 3g64_A          109 VRECPFPVIAALHGVAAGAGAVLALAAD--FRVADPSTRFAFLFTRVG  154 (279)
T ss_dssp             HHHSSSCEEEEECSEEETHHHHHHHHSS--EEEECTTCEEECCGGGGT
T ss_pred             HHhCCCCEEEEEcCeeccccHHHHHhCC--EEEEeCCCEEeCchhhcC
Confidence            8889999999999999999999999999  499999999876554444

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=95.67  E-value=0.046  Score=47.52  Aligned_cols=91  Identities=15%  Similarity=0.171  Sum_probs=67.4

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeC-----CCCCccH---------------HHHHHHHHHhcCCCeEEEEccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYING-----PGGDVTP---------------TLAIYDTMQSLKSPVGTHCVGF  165 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS-----PGG~v~a---------------glaIyD~m~~~~~~V~Tv~~G~  165 (234)
                      ++.++..++.+.|..++.++..+-|.|.=+.     -|+|+..               ...+++.|..++.||.+.+.|.
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  112 (265)
T 3kqf_A           33 LSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGI  112 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence            6678888999998888765444433333222     2445422               2346777888999999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |.+.|.-|+++||  -|++.++++|-+-...-|
T Consensus       113 a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  143 (265)
T 3kqf_A          113 ALGGGTELSLACD--FRIAAESASLGLTETTLA  143 (265)
T ss_dssp             EETHHHHHHHHSS--EEEEETTCEEECCGGGGT
T ss_pred             eehHHHHHHHhCC--EEEEcCCcEEECcccccC
Confidence            9999999999999  499999999887665544

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=95.55  E-value=0.038  Score=48.58  Aligned_cols=93  Identities=16%  Similarity=0.102  Sum_probs=68.7

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCccHH-----------------HHHHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPT-----------------LAIYDTMQ  152 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~ag-----------------laIyD~m~  152 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.    .=|.|+|+..-                 ..++..|.
T Consensus        40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~  119 (276)
T 3rrv_A           40 IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMA  119 (276)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence            3556544     6778889999999888765544444442    23455665321                 23566788


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      .++.||.+.+.|.|.+.|.-|+++||  -|++.++++|-+-
T Consensus       120 ~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~p  158 (276)
T 3rrv_A          120 RCRIPVVAAVNGPAVGLGCSLVALSD--IVYIAENAYLADP  158 (276)
T ss_dssp             HCSSCEEEEECSCEETHHHHHHHTSS--EEEEETTCEEECC
T ss_pred             hCCCCEEEEECceeeHHHHHHHHHCC--EEEEeCCCEEECc
Confidence            89999999999999999999999999  4999999988753

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=95.48  E-value=0.01  Score=57.44  Aligned_cols=93  Identities=18%  Similarity=0.148  Sum_probs=67.0

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL  173 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI  173 (234)
                      |.++.+.+.....-+..-+. . .-||..++|+||          |-+..+-.+.+.+...+.|+.|++.|-+.|.|.+-
T Consensus       346 G~l~~~~a~Kaarfi~~c~~-~-~iPlv~lvDtpGf~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~~a  423 (530)
T 3iav_A          346 GCLDITASEKAARFVRTCDA-F-NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYVV  423 (530)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH-T-TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh-c-CCCEEEEeeCCCCCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHH
Confidence            67887766543333332222 2 368999999998          55667778889999999999999999999866655


Q ss_pred             HcCC--CCCCEEeccCceEeeeCCCCc
Q 026750          174 LAGG--EKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       174 laaG--~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +++-  .....++.|||++-+=.|.+.
T Consensus       424 m~~~~~~~d~~~awp~a~~~Vm~~ega  450 (530)
T 3iav_A          424 MGSKHLGADLNLAWPTAQIAVMGAQGA  450 (530)
T ss_dssp             TTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             hcCCCCCCCEEEEcCCceEecCCHHHH
Confidence            5430  123689999999998877653

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=95.42  E-value=0.018  Score=51.78  Aligned_cols=90  Identities=10%  Similarity=0.086  Sum_probs=67.4

Q ss_pred             ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHH-------HHHHHHHhc---CCCeEEEEccccccHHH
Q 026750          102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-------AIYDTMQSL---KSPVGTHCVGFAYHLAG  171 (234)
Q Consensus       102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~agl-------aIyD~m~~~---~~~V~Tv~~G~AaS~as  171 (234)
                      +++.++......+...+......  .-++.++.+|+|+++..+.       .|...+..+   +.|+.+++.|-|++.|+
T Consensus       130 ~ggslg~~~~~Ki~r~~e~A~~~--~~PvI~l~~sGGarlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg~  207 (304)
T 2f9y_B          130 MGGSMGSVVGARFVRAVEQALED--NCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVS  207 (304)
T ss_dssp             TTTCBCTHHHHHHHHHHHHHHHH--TCCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHhC--CCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCccHHH
Confidence            45777778888887777655543  4688888999999986552       244455443   78999999999988886


Q ss_pred             HHH-cCCCCCCEEeccCceEeeeCC
Q 026750          172 FLL-AGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       172 lIl-aaG~kgkR~a~PnAriMIHqP  195 (234)
                      +.+ ++|+  .+++.|+|++.+--|
T Consensus       208 a~~a~~~D--~via~~~A~i~v~Gp  230 (304)
T 2f9y_B          208 ASFAMLGD--LNIAEPKALIGFAGP  230 (304)
T ss_dssp             TTGGGCCS--EEEECTTCBEESSCH
T ss_pred             HHHHhcCC--EEEEeCCcEEEeecH
Confidence            664 4687  489999999987655

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=95.41  E-value=0.06  Score=48.85  Aligned_cols=98  Identities=15%  Similarity=0.090  Sum_probs=75.1

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCC-----------CCCccH-------------------
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGP-----------GGDVTP-------------------  143 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP-----------GG~v~a-------------------  143 (234)
                      +|.|+-+     ++.++..++.+.|..++.++..+-|.|.=+.+           |+|+..                   
T Consensus        69 ~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  148 (334)
T 3t8b_A           69 RVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDV  148 (334)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-----------------
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhH
Confidence            3556654     67888899999999888766555565554433           666642                   


Q ss_pred             -------HHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEec-cCceEeeeCCCCc
Q 026750          144 -------TLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAM-PLSRIALDSPAGA  198 (234)
Q Consensus       144 -------glaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~-PnAriMIHqP~~~  198 (234)
                             ...++..|..++.||.+.+-|.|.+.|.-|+++||  -|++. ++++|.+-...-|
T Consensus       149 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD--~riAs~~~A~f~~pe~~lG  209 (334)
T 3t8b_A          149 ARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCD--LTLASREYARFKQTDADVG  209 (334)
T ss_dssp             -----CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSS--EEEEETTTCEEECCCTTCS
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCC--EEEEeCCCcEEECcccccC
Confidence                   12356778899999999999999999999999999  49999 9999988766544

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=95.35  E-value=0.063  Score=46.45  Aligned_cols=91  Identities=16%  Similarity=0.060  Sum_probs=66.1

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHH-------------------HHHHHHHHhcCCCeEEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------------LAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~ag-------------------laIyD~m~~~~~~V~Tv  161 (234)
                      .++.++..++.+.|..++.++ .+-|.|.=+    |.|+|+..-                   ..+++.|..++.||.+.
T Consensus        29 al~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  107 (261)
T 2gtr_A           29 SLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVA  107 (261)
T ss_dssp             EECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            367788888888888887643 433333221    456665321                   13455677889999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.|.|.+.|.-|++++|-  |++.++++|-+-...-|
T Consensus       108 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  142 (261)
T 2gtr_A          108 VNGPAIGLGASILPLCDV--VWANEKAWFQTPYTTFG  142 (261)
T ss_dssp             ECSCEETHHHHTGGGSSE--EEEETTCEEECCTTTTT
T ss_pred             ECCeEeeHHHHHHHhCCE--EEEcCCCEEeCchhccC
Confidence            999999999999999994  99999999887655544

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=95.35  E-value=0.04  Score=47.84  Aligned_cols=85  Identities=12%  Similarity=-0.020  Sum_probs=64.1

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH---------------HHHHHHHHHhcCCCeEEEEccc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP---------------TLAIYDTMQSLKSPVGTHCVGF  165 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a---------------glaIyD~m~~~~~~V~Tv~~G~  165 (234)
                      .++.+...++.+.|..++.++..+-|.|.=+    |.|+|+..               ...+++.|..++.||.+.+.|.
T Consensus        39 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  118 (257)
T 1szo_A           39 VWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGP  118 (257)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Confidence            3678888889998888876554554444433    55666632               1245667788899999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEee
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      |. .|.-|++++|  -|++.++++|.+
T Consensus       119 a~-GG~~LalacD--~ria~~~a~f~~  142 (257)
T 1szo_A          119 VT-NAPEIPVMSD--IVLAAESATFQD  142 (257)
T ss_dssp             BC-SSTHHHHTSS--EEEEETTCEEEC
T ss_pred             hH-HHHHHHHHCC--EEEEeCCCEEec
Confidence            99 5888999999  499999999876

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=95.33  E-value=0.024  Score=54.62  Aligned_cols=90  Identities=19%  Similarity=0.244  Sum_probs=73.4

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL  173 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI  173 (234)
                      |.++++.+..+...+..-+..  .-||..++||||          |.+.++-.+.+.+...+.|+.|++.|-+++.|++.
T Consensus       339 G~l~~~~~~K~ar~i~~a~~~--~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~  416 (522)
T 1x0u_A          339 GSIDIDAADKAARFIRFCDAF--NIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIA  416 (522)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHhhC--CCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHH
Confidence            567777777666555543332  469999999999          77788888889999999999999999999999998


Q ss_pred             HcC----CCCCCEEeccCceEeeeCCCC
Q 026750          174 LAG----GEKGNRSAMPLSRIALDSPAG  197 (234)
Q Consensus       174 laa----G~kgkR~a~PnAriMIHqP~~  197 (234)
                      ++.    ++  ..++.|+|++-+=.|.+
T Consensus       417 ~a~~a~~~D--~v~a~p~A~i~v~gpeg  442 (522)
T 1x0u_A          417 MSIKSLGAD--LVYAWPTAEIAVTGPEG  442 (522)
T ss_dssp             TCCGGGTCS--EEEECTTCEEESSCHHH
T ss_pred             hcccccCCC--EEEEeCCCEEEecCHHH
Confidence            887    66  47999999999988874

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=95.28  E-value=0.094  Score=45.88  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=70.7

Q ss_pred             EEEECc-----ccChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH-------------------HHHHHHH
Q 026750           99 VIFIGQ-----NIDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------------TLAIYDT  150 (234)
Q Consensus        99 iIfL~g-----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a-------------------glaIyD~  150 (234)
                      +|.|+-     .++.++..++.+.|..++.++..+-|.|.=+    |-|+|+..                   ...++..
T Consensus        27 ~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  106 (274)
T 4fzw_C           27 TLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRR  106 (274)
T ss_dssp             EEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHH
T ss_pred             EEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHH
Confidence            355654     3778888999999988886554433332211    34455432                   1135667


Q ss_pred             HHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       151 m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |..++.||.+.+.|.|...|.-|+++||  -|++.++++|.+-...-|
T Consensus       107 l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  152 (274)
T 4fzw_C          107 LAKLPKPVICAVNGVAAGAGATLALGGD--IVIAARSAKFVMAFSKLG  152 (274)
T ss_dssp             HHHCSSCEEEEECSCEETHHHHHHHTSS--EEEEETTCEEECCGGGTT
T ss_pred             HHHCCCCEEEEECCceeecCceeeeccc--eEEECCCCEEECcccCcc
Confidence            8889999999999999999999999999  499999999987665544

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=95.26  E-value=0.042  Score=47.96  Aligned_cols=85  Identities=11%  Similarity=0.023  Sum_probs=64.1

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccH----------------HHHHHHHHHhcCCCeEEEEcc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP----------------TLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~a----------------glaIyD~m~~~~~~V~Tv~~G  164 (234)
                      .++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..                ...+++.|...+.||.+.+.|
T Consensus        47 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  126 (263)
T 2j5g_A           47 VFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNG  126 (263)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            3678888899999988876555554544433    67777632                123556777889999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEee
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIAL  192 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMI  192 (234)
                      .|. .|.-|+++||  -|++.++++|.+
T Consensus       127 ~a~-GG~~LalacD--~ria~~~a~f~~  151 (263)
T 2j5g_A          127 AAL-LHSEYILTTD--IILASENTVFQD  151 (263)
T ss_dssp             EEC-SCGGGGGGCS--EEEEETTCEECC
T ss_pred             cch-HHHHHHHhCC--EEEEcCCCEEec
Confidence            999 5888888999  599999999876

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=95.25  E-value=0.1  Score=46.11  Aligned_cols=93  Identities=14%  Similarity=0.056  Sum_probs=69.2

Q ss_pred             EEECc----ccChhhHHHHHHHHhcccccCCCCceEEEEeCC----CC-CccH------------------HHHHHHHHH
Q 026750          100 IFIGQ----NIDEEFSNQILATMLYLDSVDDSKRVYMYINGP----GG-DVTP------------------TLAIYDTMQ  152 (234)
Q Consensus       100 IfL~g----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP----GG-~v~a------------------glaIyD~m~  152 (234)
                      |.|+.    .++.++..++.+.|..++.++..+-|.|.=+.+    || |+..                  ...++..|.
T Consensus        21 itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  100 (289)
T 3h0u_A           21 ATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLS  100 (289)
T ss_dssp             EEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHH
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHH
Confidence            44554    377888889999998887655455555544333    34 6532                  224667788


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccC-ceEeeeC
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL-SRIALDS  194 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~Pn-AriMIHq  194 (234)
                      .++.||.+.+.|.|.+.|.-|+++||  -|++.++ ++|-+-.
T Consensus       101 ~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~~a~f~~pe  141 (289)
T 3h0u_A          101 QLPAVTIAKLRGRARGAGSEFLLACD--MRFASRENAILGQPE  141 (289)
T ss_dssp             TCSSEEEEEECSEEETHHHHHHHHSS--EEEEETTTCEEECTH
T ss_pred             hCCCCEEEEECCEeehhhHHHHHhCC--EEEEeCCCcEEeCch
Confidence            99999999999999999999999999  4999998 9887643

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=95.24  E-value=0.091  Score=45.15  Aligned_cols=96  Identities=17%  Similarity=0.172  Sum_probs=71.3

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCcc--------------HHHHHHHHHHh
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVT--------------PTLAIYDTMQS  153 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~--------------aglaIyD~m~~  153 (234)
                      +|-|+-|     ++.++..++.+.|..++.++..+-|  .|.+-|      +|+.              ....+++.|..
T Consensus        12 ~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~   89 (254)
T 3hrx_A           12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRAL--LLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSG   89 (254)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEE--EEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHT
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEE--EEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHh
Confidence            4556654     7888899999999988865544333  333333      3332              23357788889


Q ss_pred             cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ++.||.+.+.|.|...|.-|+++||  -|++.++++|.+-...-|
T Consensus        90 ~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~lG  132 (254)
T 3hrx_A           90 LEKPLVVAVNGVAAGAGMSLALWGD--LRLAAVGASFTTAFVRIG  132 (254)
T ss_dssp             CSSCEEEEECSEEETHHHHHHTTCS--EEEEETTCEEECCGGGGT
T ss_pred             CCCCEEEEECCEeeehhhhhhhccc--eeeEcCCCEEEchhhCcC
Confidence            9999999999999999999999999  499999999877555444

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=95.24  E-value=0.076  Score=46.46  Aligned_cols=95  Identities=13%  Similarity=0.014  Sum_probs=68.5

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHH-------------------------
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------------------  144 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~ag-------------------------  144 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..-                         
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (280)
T 1pjh_A           21 IIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVAR  100 (280)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHH
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHH
Confidence            3455544     677888888888888876544443433322    556665320                         


Q ss_pred             -HHHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEec-cCceEeeeCC
Q 026750          145 -LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAM-PLSRIALDSP  195 (234)
Q Consensus       145 -laIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~-PnAriMIHqP  195 (234)
                       ..+++.|..++.||.+.+.|.|.+.|.-|+++||  -|++. ++++|-+-..
T Consensus       101 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD--~~ia~~~~a~f~~pe~  151 (280)
T 1pjh_A          101 NVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCD--IVYSINDKVYLLYPFA  151 (280)
T ss_dssp             HHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSS--EEEESSTTCEEECCHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCC--EEEEeCCCCEEeCchh
Confidence             1345667788999999999999999999999999  49999 9998876543

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=95.23  E-value=0.032  Score=48.83  Aligned_cols=91  Identities=8%  Similarity=0.067  Sum_probs=64.5

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHHH------------H--------HHHHHHhcCCCeEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL------------A--------IYDTMQSLKSPVGTH  161 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~agl------------a--------IyD~m~~~~~~V~Tv  161 (234)
                      ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..-.            .        +++.|..++.||.+.
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  112 (276)
T 2j5i_A           33 MSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAM  112 (276)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            677888888888888875443333333322    6778774311            0        123345667899999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       113 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  147 (276)
T 2j5i_A          113 VNGWCFGGGFSPLVACD--LAICADEATFGLSEINWG  147 (276)
T ss_dssp             ECSCEEGGGHHHHHHSS--EEEEETTCEEECGGGGGT
T ss_pred             ECCeeehhHHHHHHhCC--EEEEcCCCEEeCcccccC
Confidence            99999999999999999  499999999887554433

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=95.19  E-value=0.048  Score=48.12  Aligned_cols=98  Identities=16%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             EEEECc-----ccChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccH----------------HHHHHHHHHh
Q 026750           99 VIFIGQ-----NIDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP----------------TLAIYDTMQS  153 (234)
Q Consensus        99 iIfL~g-----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~a----------------glaIyD~m~~  153 (234)
                      +|.|+.     .++.++..++.+.|..++.++..+-|.|.=    =|.|+|+..                ...++..|..
T Consensus        38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~  117 (286)
T 3myb_A           38 TLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQR  117 (286)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHc
Confidence            355654     467788889999998887654444443321    234455432                1245667788


Q ss_pred             cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       118 ~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lG  160 (286)
T 3myb_A          118 LPAPVIARVHGIATAAGCQLVAMCDL--AVATRDARFAVSGINVG  160 (286)
T ss_dssp             SSSCEEEEECSCEETHHHHHHHHSSE--EEEETTCEEECGGGGGT
T ss_pred             CCCCEEEEECCeehHHHHHHHHhCCE--EEEcCCCEEECcccccC
Confidence            89999999999999999999999994  99999999876555444

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=95.07  E-value=0.086  Score=46.65  Aligned_cols=89  Identities=18%  Similarity=0.080  Sum_probs=64.7

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccHH-------------------HHHHHHHHhcCCCeEEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPT-------------------LAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~ag-------------------laIyD~m~~~~~~V~Tv  161 (234)
                      .++.++..++.+.|..++.++ .+-|.|.=    =|.|+|+..-                   ..++..|..++.||.+.
T Consensus        47 al~~~m~~~L~~al~~~~~d~-~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  125 (291)
T 2fbm_A           47 ALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVS  125 (291)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCC-CeEEEEECCCCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            477888888988888887543 33222221    1466776431                   12445677889999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +.|.|.+.|.-|+++||-  |++.++++|.+-...
T Consensus       126 V~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~  158 (291)
T 2fbm_A          126 VNGPAIGLGASILPLCDL--VWANEKAWFQTPYTT  158 (291)
T ss_dssp             ECSCEETHHHHTGGGSSE--EEEETTCEEECCHHH
T ss_pred             ECCeeecHHHHHHHhCCE--EEEeCCCEEECcHHh
Confidence            999999999999999994  999999998765433

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=95.06  E-value=0.059  Score=47.60  Aligned_cols=98  Identities=12%  Similarity=0.055  Sum_probs=67.6

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccH----------------------HHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP----------------------TLAI  147 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~a----------------------glaI  147 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=    =|.|+|+..                      ...+
T Consensus        36 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (290)
T 3sll_A           36 LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEV  115 (290)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHH
Confidence            3556543     56788888888888887654444333321    233444321                      2245


Q ss_pred             HHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       148 yD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ++.|..++.||.+.+.|.|.+.|.-|+++||-  |++.++++|.+-...-|
T Consensus       116 ~~~l~~~~kPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G  164 (290)
T 3sll_A          116 ILTLRRMHQPVIAAINGAAIGGGLCLALACDV--RVASQDAYFRAAGINNG  164 (290)
T ss_dssp             HHHHHHCSSCEEEEECSEEETHHHHHHHHSSE--EEEETTCEEECTTTTTT
T ss_pred             HHHHHhCCCCEEEEECCeehHHHHHHHHHCCE--EEEeCCCEEECchhccC
Confidence            67788899999999999999999999999994  99999999877554434

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=95.05  E-value=0.037  Score=48.74  Aligned_cols=98  Identities=13%  Similarity=0.170  Sum_probs=70.2

Q ss_pred             EEEECc-----ccChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCccHHH-------------HHHHHHHhcCC
Q 026750           99 VIFIGQ-----NIDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPTL-------------AIYDTMQSLKS  156 (234)
Q Consensus        99 iIfL~g-----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~agl-------------aIyD~m~~~~~  156 (234)
                      +|.|+.     .++.++..++.+.|..++.++..+-|.|.    .=|.|+|+..-.             ..++.|..++.
T Consensus        37 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k  116 (278)
T 3h81_A           37 IITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRT  116 (278)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCS
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHHHHHHHHHhCCC
Confidence            355653     46788888999988888765444433331    234455653211             11456888899


Q ss_pred             CeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       157 ~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       117 PvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~lG  156 (278)
T 3h81_A          117 PTIAAVAGYALGGGCELAMMCD--VLIAADTAKFGQPEIKLG  156 (278)
T ss_dssp             CEEEEECBEEETHHHHHHHHSS--EEEEETTCEEECGGGGGT
T ss_pred             CEEEEECCeeehHHHHHHHHCC--EEEEcCCCEEECchhhcC
Confidence            9999999999999999999999  499999999887655544

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.04  E-value=0.07  Score=52.25  Aligned_cols=99  Identities=10%  Similarity=-0.012  Sum_probs=71.3

Q ss_pred             cEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccc
Q 026750           98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAY  167 (234)
Q Consensus        98 RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~Aa  167 (234)
                      ++..++|.++++.+.....-+..-+..  .-||..++|.||          |-+.+|-.+...+...+.|+.|++.|-+.
T Consensus       381 ~~~~~~G~l~~~~a~Kaarfi~lcd~f--~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~  458 (588)
T 3gf3_A          381 NSVGIGGKLYRQGLIKMNEFVTLCARD--RIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKAS  458 (588)
T ss_dssp             SCEEETTEECHHHHHHHHHHHHHHHHT--TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSEEE
T ss_pred             hhhccCCCcCHHHHHHHHHHHHHhhhc--CCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCcc
Confidence            344466788887654333222222222  368999999998          66778888999999999999999999999


Q ss_pred             cHHHHHHcC---CCC-CCEEeccCceEeeeCCCCc
Q 026750          168 HLAGFLLAG---GEK-GNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       168 S~aslIlaa---G~k-gkR~a~PnAriMIHqP~~~  198 (234)
                      +.|.+.+++   +.. ...++.|+|++-+-.|.+.
T Consensus       459 Ggg~~am~~~~~~~~~~~~~awp~A~~sVm~pEga  493 (588)
T 3gf3_A          459 AAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETA  493 (588)
T ss_dssp             TTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHHH
T ss_pred             HHHHHHhcccccCCccceEEECCCceEEeCCHHHH
Confidence            988776664   220 1357899999988877654

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=95.03  E-value=0.074  Score=51.76  Aligned_cols=92  Identities=12%  Similarity=0.036  Sum_probs=68.7

Q ss_pred             ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHH
Q 026750          102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAG  171 (234)
Q Consensus       102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~as  171 (234)
                      -.|.++.+.+.....-+..-+..  .-||..++|+||          |-+.++-.+...+...+.|+.|++.|-+.+.|+
T Consensus       364 n~G~l~~~~a~Kaarfi~~c~~~--~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~  441 (555)
T 3u9r_B          364 NNGILFAEAAQKGAHFIELACQR--GIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGN  441 (555)
T ss_dssp             ECSSBCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHH
T ss_pred             eCCccCHHHHHHHHHHHHHHhcC--CCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhh
Confidence            34778887665433333322222  368999999999          556777788889999999999999999999988


Q ss_pred             HHHcC----CCCCCEEeccCceEeeeCCCC
Q 026750          172 FLLAG----GEKGNRSAMPLSRIALDSPAG  197 (234)
Q Consensus       172 lIlaa----G~kgkR~a~PnAriMIHqP~~  197 (234)
                      +-+++    ++  ..++.|+|++-+=.|.+
T Consensus       442 ~am~~~~~~~d--~~~a~p~A~i~Vmgpeg  469 (555)
T 3u9r_B          442 YGMCGRAYDPR--FLWMWPNARIGVMGGEQ  469 (555)
T ss_dssp             HHTTCGGGCCS--EEEECTTCEEESSCHHH
T ss_pred             HhhcCccCCCC--eEEEcCCcEEEcCCHHH
Confidence            87764    34  57999999998876654

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=94.91  E-value=0.17  Score=45.58  Aligned_cols=47  Identities=9%  Similarity=0.085  Sum_probs=40.7

Q ss_pred             HHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       148 yD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +..|..++.||.+.+.|.|.+.|.-|+++||  -|++.++++|-+-...
T Consensus       150 ~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~rias~~a~f~~pe~~  196 (333)
T 3njd_A          150 FASLMHCDKPTVVKIHGYCVAGGTDIALHAD--QVIAAADAKIGYPPMR  196 (333)
T ss_dssp             HTHHHHSSSCEEEEECSEEETHHHHHHTTSS--EEEECTTCEEECGGGG
T ss_pred             HHHHHhCCCCEEEEECCEEeHHHHHHHHhCC--EEEECCCCeeechhhc
Confidence            4567778999999999999999999999999  4999999998776543

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=94.86  E-value=0.036  Score=48.20  Aligned_cols=95  Identities=15%  Similarity=0.031  Sum_probs=66.0

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHHH------HHHHHHHhcCCCeEEEEc
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL------AIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~agl------aIyD~m~~~~~~V~Tv~~  163 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+    |.|+|+..-.      .+...+..++.||.+.+.
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~  100 (256)
T 3pe8_A           21 TLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAIN  100 (256)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEEC
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEEC
Confidence            3556654     678888999999988876554443333221    3344443211      122345567889999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      |.|.+.|.-|+++||  -|++.++++|.+...
T Consensus       101 G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  130 (256)
T 3pe8_A          101 GAAVTGGLELALYCD--ILIASENAKFADTHA  130 (256)
T ss_dssp             SEEETHHHHHHHHSS--EEEEETTCEEECCHH
T ss_pred             CeeechHHHHHHhCC--EEEEcCCCEEECchh
Confidence            999999999999999  499999999876543

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=94.85  E-value=0.21  Score=43.68  Aligned_cols=96  Identities=13%  Similarity=0.013  Sum_probs=68.1

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHH--------------------HHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT--------------------LAIYD  149 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~ag--------------------laIyD  149 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=.    |-|+|+..-                    ..++.
T Consensus        32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
T 3t3w_A           32 TITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSL  111 (279)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence            3556654     678888999999988876544443333222    334554311                    12445


Q ss_pred             HHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       150 ~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .|..++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...
T Consensus       112 ~l~~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~  156 (279)
T 3t3w_A          112 RWRNVPKPSIAAVQGRCISGGLLLCWPCD--LIIAAEDALFSDPVVL  156 (279)
T ss_dssp             HHHHCSSCEEEEECSEEEGGGHHHHTTSS--EEEEETTCEEECCGGG
T ss_pred             HHHhCCCCEEEEECCeEhHHHHHHHHhCC--EEEecCCCEEeCcHHh
Confidence            67788999999999999999999999999  4999999998765443

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=94.84  E-value=0.14  Score=46.65  Aligned_cols=96  Identities=13%  Similarity=0.162  Sum_probs=70.0

Q ss_pred             EEEECc-----ccChhhHHHHHHHHhcccccCCCCceEEEEe-----CCCCCccH------------------HHHHHHH
Q 026750           99 VIFIGQ-----NIDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP------------------TLAIYDT  150 (234)
Q Consensus        99 iIfL~g-----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-----SPGG~v~a------------------glaIyD~  150 (234)
                      +|-|+-     .++.++...+.+.|..++.++..+-|.|.=+     |-|||+..                  ...++..
T Consensus        21 ~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (353)
T 4hdt_A           21 LLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAH  100 (353)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHH
Confidence            455654     3778888999999988876554443333212     23556532                  1235667


Q ss_pred             HHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       151 m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      |..++.||.+.+.|.|...|.-|+++||  -|++.++++|.+-...
T Consensus       101 i~~~~kPvIAav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~  144 (353)
T 4hdt_A          101 IGRYPKPYVSIMDGIVMGGGVGVGAHGN--VRVVTDTTKMAMPEVG  144 (353)
T ss_dssp             HHHCSSCEEEEECBEEETHHHHHHTTSS--EEEECTTCEEECCGGG
T ss_pred             HHHCCCCEEEEeECceeecCccccCCcC--eeccchhccccCcccc
Confidence            8889999999999999999999999999  4999999998775443

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=94.83  E-value=0.082  Score=45.06  Aligned_cols=89  Identities=19%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccH---------------HHHHHHHHHhcCCCeEEEEc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTP---------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~a---------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      .++.++..++.+.+..++.+ +.+  .+.|.      |.|+|+..               ...++..|..++.||.+.+.
T Consensus        27 al~~~~~~~L~~al~~~~~d-~vr--~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  103 (233)
T 3r6h_A           27 VLGPTMQQALNEAIDAADRD-NVG--ALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACT  103 (233)
T ss_dssp             CCSHHHHHHHHHHHHHHHHH-TCS--EEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHhC-CCe--EEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            46778888888888888753 333  23333      33455421               23466778889999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |.|.+.|.-|+++||  -|++.++++|-+-...-|
T Consensus       104 G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G  136 (233)
T 3r6h_A          104 GHAIAMGAFLLCSGD--HRVAAHAYNVQANEVAIG  136 (233)
T ss_dssp             SEEETHHHHHHTTSS--EEEECTTCCEECCGGGGT
T ss_pred             CcchHHHHHHHHhCC--EEEEeCCcEEECchhhhC
Confidence            999999999999999  499999999887554444

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.81  E-value=0.039  Score=53.42  Aligned_cols=91  Identities=18%  Similarity=0.159  Sum_probs=69.3

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL  173 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslI  173 (234)
                      |.++.+.+.....-+. +-... .-||..++|+||          |-+.++-.+.+.+...+.|+.|++.|-++|.|.+-
T Consensus       352 G~l~~~~a~Kaarfi~-lcd~~-~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~a  429 (531)
T 3n6r_B          352 GCLDIDSSRKAARFVR-FCDAF-EIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVV  429 (531)
T ss_dssp             GCBCHHHHHHHHHHHH-HHHHT-TCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH-Hhhcc-CCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhh
Confidence            6677776543333222 22222 368999999999          44677788899999999999999999999999888


Q ss_pred             HcC----CCCCCEEeccCceEeeeCCCCc
Q 026750          174 LAG----GEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       174 laa----G~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +++    ++  ..++.|+|++-+=.|.+.
T Consensus       430 m~~~~~~~d--~~~awp~A~i~Vm~pega  456 (531)
T 3n6r_B          430 MSSKHLRAD--FNYAWPTAEVAVMGAKGA  456 (531)
T ss_dssp             TTCGGGTCS--EEEECTTCEEESSCHHHH
T ss_pred             ccCccCCCC--eEEEcCCceEecCCHHHH
Confidence            875    44  579999999998877653

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=94.81  E-value=0.088  Score=45.67  Aligned_cols=96  Identities=17%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH------------HHH-HHHHH-H-
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP------------TLA-IYDTM-Q-  152 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a------------gla-IyD~m-~-  152 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.  |.+-|      +|+..            ... +++.| . 
T Consensus        21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (265)
T 3rsi_A           21 ILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAI--LTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLS   98 (265)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEE--EEESTTCSEECC--------------CCCHHHHHHHTTSS
T ss_pred             EEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEE--EECCCCCcccCcCCCcccccchHHHHHHhHHHHHHHHHHh
Confidence            4566654     67888899999998887655444333  33333      44420            012 66777 7 


Q ss_pred             -hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          153 -SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       153 -~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                       .++.||.+.+.|.|.+.|.-|++++|  -|++.++++|.+-...-|
T Consensus        99 ~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G  143 (265)
T 3rsi_A           99 HTLTKPLIAAVNGACLGGGCEMLQQTD--IRVSDEHATFGLPEVQRG  143 (265)
T ss_dssp             CCCSSCEEEEECSCEETHHHHHHTTCS--EEEEETTCEEECGGGGGT
T ss_pred             cCCCCCEEEEECCeeeHHHHHHHHHCC--EEEecCCCEEECchhccC
Confidence             78899999999999999999999999  499999999876554433

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=94.78  E-value=0.049  Score=47.60  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=69.0

Q ss_pred             EEEECcc----cChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccHH-----------------HHHHHHHHh
Q 026750           99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPT-----------------LAIYDTMQS  153 (234)
Q Consensus        99 iIfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~ag-----------------laIyD~m~~  153 (234)
                      +|.|+.+    ++.++..++.+.|..++.++..+-|.|.=    =|.|+|+..-                 ..++..|..
T Consensus        26 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  105 (272)
T 3qk8_A           26 NLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVN  105 (272)
T ss_dssp             EEEECCHHHHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCcCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHh
Confidence            3556654    67888889999998888655444433321    2344454221                 135566788


Q ss_pred             cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      ++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-..
T Consensus       106 ~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  145 (272)
T 3qk8_A          106 LDKPVVSAIRGPAVGAGLVVALLAD--ISVASATAKIIDGHT  145 (272)
T ss_dssp             CCSCEEEEECSEEEHHHHHHHHHSS--EEEEETTCEEECCHH
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCC--EEEEcCCCEEECchh
Confidence            8999999999999999999999999  499999999876544

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=94.54  E-value=0.023  Score=49.43  Aligned_cols=91  Identities=16%  Similarity=0.131  Sum_probs=67.1

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCccHH--------------HHHHHHHHhcCCCeEEEEccccc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPT--------------LAIYDTMQSLKSPVGTHCVGFAY  167 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~ag--------------laIyD~m~~~~~~V~Tv~~G~Aa  167 (234)
                      ++.++..++.+.|..++.++..+-|.|.    .=|.|+|+..-              ..++..|..++.||.+.+.|.|.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  110 (265)
T 3qxz_A           31 FTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAI  110 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSCCCSCCSSSCGGGSSSCEEEEECSEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence            7788889999999888865544444442    23455555321              22455678889999999999999


Q ss_pred             cHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          168 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       168 S~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.|.-|+++||  -|++.++++|-+-...-|
T Consensus       111 GgG~~lalacD--~~ia~~~a~f~~pe~~~G  139 (265)
T 3qxz_A          111 GIGMTLALHAD--IRILAEEGRYAIPQVRFG  139 (265)
T ss_dssp             THHHHHHTTSS--EEEEETTCCEECCGGGGT
T ss_pred             hHhHHHHHHCC--EEEEcCCCEEECcccccC
Confidence            99999999999  499999999886554433

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=94.47  E-value=0.22  Score=42.87  Aligned_cols=96  Identities=11%  Similarity=0.078  Sum_probs=69.1

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH---------------HHHHHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP---------------TLAIYDTMQ  152 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a---------------glaIyD~m~  152 (234)
                      +|.|+.+     ++.++..++.+.|..++. +..+-|  .|-+      -|+|+..               ...++..|.
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (254)
T 3isa_A           19 TFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLL--VFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVA   95 (254)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEE--EEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEE--EEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHH
Confidence            3555544     678888889988888864 333322  3333      3445421               123567788


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCcc
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA  199 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~  199 (234)
                      .++.||.+.+.|.|.+.|.-|++++|  -|++.++++|-+....-|.
T Consensus        96 ~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl  140 (254)
T 3isa_A           96 GSPSLTLALAHGRNFGAGVDLFAACK--WRYCTPEAGFRMPGLKFGL  140 (254)
T ss_dssp             TCSSEEEEEECSEEETHHHHHHHHSS--EEEECTTCEEECCGGGGTC
T ss_pred             hCCCCEEEEECCeEeecchhHHHhCC--EEEEcCCCEEECchhccCc
Confidence            88999999999999999999999999  4999999998876555443

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=94.27  E-value=0.12  Score=45.55  Aligned_cols=92  Identities=9%  Similarity=-0.036  Sum_probs=68.1

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe-----CCCCCccH--------------------HHHHHHHHHhcCCCeE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP--------------------TLAIYDTMQSLKSPVG  159 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-----SPGG~v~a--------------------glaIyD~m~~~~~~V~  159 (234)
                      .++.++..++.+.|..++.++..+-|.|.=.     |-|+|+..                    ...++..|..++.||.
T Consensus        31 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  110 (287)
T 3gkb_A           31 VIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTI  110 (287)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEEE
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            4677888889888888876554444444322     33566532                    1236778889999999


Q ss_pred             EEEccccccHHHHHHcCCCCCCEEecc-CceEeeeCCCCc
Q 026750          160 THCVGFAYHLAGFLLAGGEKGNRSAMP-LSRIALDSPAGA  198 (234)
Q Consensus       160 Tv~~G~AaS~aslIlaaG~kgkR~a~P-nAriMIHqP~~~  198 (234)
                      +.+.|.|.+.|.-|+++||  -|++.+ +++|-+-...-|
T Consensus       111 AaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~lG  148 (287)
T 3gkb_A          111 VKLAGKARGGGAEFVAAAD--MAFAAAETAGLGQIEALMG  148 (287)
T ss_dssp             EEECSEEETHHHHHHHHSS--EEEEETTTCEEECGGGGGT
T ss_pred             EEECCeeehHHHHHHHHCC--EEEEeCCCcEEECcccccC
Confidence            9999999999999999999  499999 999887554433

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=93.97  E-value=0.14  Score=44.33  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCcc-------------HHHHHHHHHHhcCCCeEEEEccc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVT-------------PTLAIYDTMQSLKSPVGTHCVGF  165 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~-------------aglaIyD~m~~~~~~V~Tv~~G~  165 (234)
                      -++.++..++.+.|..++.++..+-  |.|.+-      |+|+.             ....++..|..++.||.+.+.|.
T Consensus        28 al~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  105 (258)
T 4fzw_A           28 ALNNALLMQLVNELEAAATDTSISV--CVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGY  105 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCE--EEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEECSE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeEE--EEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEcCc
Confidence            3677888889988888876543332  233433      34432             12357788999999999999999


Q ss_pred             cccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       166 AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |...|.-|+++||-  |++.++++|.+-...-|
T Consensus       106 a~GgG~~lalacD~--ria~~~a~f~~pe~~~G  136 (258)
T 4fzw_A          106 ALGAGCELALLCDV--VVAGENARFGLPEITLG  136 (258)
T ss_dssp             EETHHHHHHHHSSE--EEEETTCEEECCGGGGT
T ss_pred             ceeeeeEeecccce--EEECCCCEEECcccCCC
Confidence            99999999999994  99999999887655444

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=93.78  E-value=0.13  Score=45.00  Aligned_cols=96  Identities=17%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHH---------------------HHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI---------------------YDTMQ  152 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaI---------------------yD~m~  152 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|  .|.+-|+...+|.-|                     ++.|.
T Consensus        32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  109 (278)
T 4f47_A           32 IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCC--ILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALL  109 (278)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEE--EEEESTTCCC----------------------CTTCBTTTT
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEE--EEECCCCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHH
Confidence            4566654     6788888999999888765444433  334444444343222                     23344


Q ss_pred             ---hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          153 ---SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       153 ---~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                         .++.||.+.+.|.|.+.|.-|+++||  -|++.++++|-+-...-|
T Consensus       110 ~~~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  156 (278)
T 4f47_A          110 KGRRLKKPLIAAVEGPAIAGGTEILQGTD--IRVAAESAKFGISEAKWS  156 (278)
T ss_dssp             BSCCCSSCEEEEECSEEETHHHHHHTTCS--EEEEETTCEEECCGGGGT
T ss_pred             HhcCCCCCEEEEECCEEehHHHHHHHhCC--EEEEcCCCEEECcccccC
Confidence               67889999999999999999999999  499999999876554433

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=93.69  E-value=0.38  Score=42.15  Aligned_cols=94  Identities=17%  Similarity=0.179  Sum_probs=67.2

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH---------------HHHHHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP---------------TLAIYDTMQ  152 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a---------------glaIyD~m~  152 (234)
                      +|.|+.+     ++.++..++.+.|..++  +..+-  |.|-+      -|+|+..               ...+++.|.
T Consensus        28 ~itlnrP~~~Nal~~~~~~~L~~al~~~d--~~vr~--vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  103 (275)
T 3hin_A           28 TIGLNRPKKRNALNDGLMAALKDCLTDIP--DQIRA--VVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQ  103 (275)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHTSSCC--TTCCE--EEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHhC--cCceE--EEEECCCCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence            3556544     67788888888877772  22222  23333      3444421               234667788


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .++.||.+.+-|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       104 ~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  147 (275)
T 3hin_A          104 YCRVPVIAALKGAVIGGGLELACAAH--IRVAEASAYYALPEGSRG  147 (275)
T ss_dssp             TCSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGGGGT
T ss_pred             hCCCCEEEEECCeeehHHHHHHHhCC--EEEEcCCCEEECchhccC
Confidence            89999999999999999999999999  499999999887665544

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=93.62  E-value=0.17  Score=47.12  Aligned_cols=96  Identities=19%  Similarity=0.191  Sum_probs=68.1

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeC-----CCCCccHHH----------------------H
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYING-----PGGDVTPTL----------------------A  146 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS-----PGG~v~agl----------------------a  146 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=..     -|||+..-.                      .
T Consensus        54 ~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (407)
T 3ju1_A           54 VVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYR  133 (407)
T ss_dssp             EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHH
Confidence            3556654     6778888999998888764433333332222     266654311                      2


Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      ++..|..++.||.+.+.|.|.+.|.-|+++||  -|++.++++|-+-...
T Consensus       134 l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe~~  181 (407)
T 3ju1_A          134 LDYLLHTYGKPVLVWGDGIVMGGGLGLMAGAS--HKVVTETSRIAMPEVT  181 (407)
T ss_dssp             HHHHHHTCSSCEEEECCSEEETHHHHHHHHCS--EEEECTTCEEECGGGG
T ss_pred             HHHHHHHCCCCEEEEECCccccCcchHHhcCC--EEEEcCCCEEeChHhh
Confidence            44567788999999999999999999999999  4999999988765443

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=93.51  E-value=0.14  Score=44.33  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=68.3

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe----CCCCCccHHHH---------------HHHHH-Hh
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTLA---------------IYDTM-QS  153 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN----SPGG~v~agla---------------IyD~m-~~  153 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+    |-|+|+..-..               +++.| ..
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (265)
T 3swx_A           21 VIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQ  100 (265)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCC
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence            4556554     678888899999988876554444433322    22455433211               22344 66


Q ss_pred             cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ++.||.+.+.|.|.+.|.-|++++|  -|++.++++|.+-...-|
T Consensus       101 ~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G  143 (265)
T 3swx_A          101 LSKPLLVAVHGKVLTLGIELALAAD--IVIADETATFAQLEVNRG  143 (265)
T ss_dssp             CSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGGGGT
T ss_pred             CCCCEEEEEcCeeehHHHHHHHHCC--EEEEcCCCEEECcccccc
Confidence            7889999999999999999999999  499999999887655433

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=93.38  E-value=0.34  Score=41.13  Aligned_cols=88  Identities=18%  Similarity=0.171  Sum_probs=65.3

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEe------CCCCCccH--------------HHHHHHHHHhcCCCeEEEEcc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTP--------------TLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN------SPGG~v~a--------------glaIyD~m~~~~~~V~Tv~~G  164 (234)
                      .++.++..++.+.|..++.+ . +  .+.|-      |.|+|+..              ...++..|..++.||.+.+.|
T Consensus        28 al~~~~~~~L~~al~~~~~d-~-~--~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  103 (232)
T 3ot6_A           28 AISPDVIIAFNAALDQAEKD-R-A--IVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPG  103 (232)
T ss_dssp             CBCHHHHHHHHHHHHHHHHT-T-C--EEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECCE
T ss_pred             CCCHHHHHHHHHHHHHHhcC-C-C--EEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            46778888888888887743 2 3  23333      44555532              135677788899999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccC-ceEeeeCCCCc
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPL-SRIALDSPAGA  198 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~Pn-AriMIHqP~~~  198 (234)
                      .|.+.|.-|+++||  -|++.++ ++|-+-...-|
T Consensus       104 ~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~G  136 (232)
T 3ot6_A          104 HAVAKGAFLLLSAD--YRIGVAGPFSIGLNEVQIG  136 (232)
T ss_dssp             EEETHHHHHHTTSS--EEEEECSSCCEECCTTTTT
T ss_pred             EeehHHHHHHHHCC--EEEEeCCCcEEECcccccC
Confidence            99999999999999  4999998 78877555444

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=93.08  E-value=0.098  Score=45.21  Aligned_cols=90  Identities=13%  Similarity=0.157  Sum_probs=63.9

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeC----CCCCccHH---------------HHHHHHH-HhcCCCeEEEEcc
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYING----PGGDVTPT---------------LAIYDTM-QSLKSPVGTHCVG  164 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS----PGG~v~ag---------------laIyD~m-~~~~~~V~Tv~~G  164 (234)
                      .++.++..++.+.|..++.++..+-|.|.=+.    -|+|+..-               ..+++.| ..++.||.+.+.|
T Consensus        35 al~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G  114 (258)
T 3lao_A           35 AFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQG  114 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            46678888888888888765544444443332    24444221               1234455 6778999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .|.+.|.-|++++|  -|++.++++|.+-...
T Consensus       115 ~a~GgG~~lalacD--~~ia~~~a~f~~pe~~  144 (258)
T 3lao_A          115 TCWTAGIELMLNAD--IAVAARGTRFAHLEVL  144 (258)
T ss_dssp             EEETHHHHHHHTSS--EEEEETTCEEECGGGG
T ss_pred             EeEhHHHHHHHhCC--EEEEcCCCEEeCcccc
Confidence            99999999999999  4999999998775543

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=93.06  E-value=0.15  Score=49.60  Aligned_cols=87  Identities=8%  Similarity=-0.051  Sum_probs=65.4

Q ss_pred             cChhhHHHHHHHHhccccc-CCCCceEEEE-----eCCCCCccHH---------------HHHHHHH----HhcCCCeEE
Q 026750          106 IDEEFSNQILATMLYLDSV-DDSKRVYMYI-----NGPGGDVTPT---------------LAIYDTM----QSLKSPVGT  160 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~-~~~k~I~L~I-----NSPGG~v~ag---------------laIyD~m----~~~~~~V~T  160 (234)
                      ++.++..++.+.|..++.+ +..+-|.|.=     -|.|+++..-               ..+++.|    ..++.||.+
T Consensus        55 Ls~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIA  134 (556)
T 2w3p_A           55 YDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLA  134 (556)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            5567778888888888765 5455555543     2677776431               2345566    788999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccC--ceEeeeC
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIALDS  194 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~Pn--AriMIHq  194 (234)
                      .+.|.|.+.|.-|+++||  -|++.++  ++|.+-.
T Consensus       135 AVnG~AlGGGleLALACD--~rIAse~~~A~FglPE  168 (556)
T 2w3p_A          135 AVNGACAGGGYELALACD--EIYLVDDRSSSVSLPE  168 (556)
T ss_dssp             EECSEEETHHHHHHHHSS--EEEEECSSSCEEECCH
T ss_pred             EECCeechhhHHHHHhCC--EEEEcCCCCcEEeccc
Confidence            999999999999999999  4999999  8877643

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=92.63  E-value=0.067  Score=47.53  Aligned_cols=96  Identities=10%  Similarity=-0.018  Sum_probs=63.6

Q ss_pred             EEEECc-----ccChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccHHH-----------------------H
Q 026750           99 VIFIGQ-----NIDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPTL-----------------------A  146 (234)
Q Consensus        99 iIfL~g-----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~agl-----------------------a  146 (234)
                      +|.|+.     .++.++..++.+.|..++.++..+-|.|.=    =|-|+|+..-.                       .
T Consensus        42 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (298)
T 3qre_A           42 IITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGER  121 (298)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------------------C
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHH
Confidence            355654     367788888888888887654443333321    12234432211                       1


Q ss_pred             HHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       147 IyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      ++..|..++.||.+.+-|.|.+.|.-|+++||  -|++.++++|.+-...
T Consensus       122 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~  169 (298)
T 3qre_A          122 PPHFVTMLRKPVIAAINGPCVGIGLTQALMCD--VRFAAAGAKFAAVFAR  169 (298)
T ss_dssp             CTTGGGGSSSCEEEEECSCEETHHHHHHHHSS--EEEEETTCEEECCCCH
T ss_pred             HHHHHHhCCCCEEEEECCceeecchHHHhhCC--EEEEcCCCEEECcccc
Confidence            22345677889999999999999999999999  4999999998775443

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=92.63  E-value=0.46  Score=43.21  Aligned_cols=91  Identities=15%  Similarity=0.108  Sum_probs=65.1

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEe-----CCCCCccHH------------------HHHHHHHHhcCCCeEEEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT------------------LAIYDTMQSLKSPVGTHC  162 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-----SPGG~v~ag------------------laIyD~m~~~~~~V~Tv~  162 (234)
                      ++.++..++.+.|..++.++..+-|.|.=+     |-|+|+..-                  ..++..|..++.||.+.+
T Consensus        30 l~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  109 (363)
T 3bpt_A           30 LTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALI  109 (363)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            677888888888888876544433333221     235555321                  124457778899999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       110 ~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~G  143 (363)
T 3bpt_A          110 HGITMGGGVGLSVHGQ--FRVATEKCLFAMPETAIG  143 (363)
T ss_dssp             CSEEETHHHHTTTTSS--EEEECTTCEEECCGGGTT
T ss_pred             CCEEehHHHHHHHhCC--EEEEcCCeEEeCCccccC
Confidence            9999999999999999  499999999887655433

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=92.49  E-value=0.11  Score=45.14  Aligned_cols=94  Identities=14%  Similarity=0.086  Sum_probs=64.5

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccHHH-------------HHHHHHHhcCC
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPTL-------------AIYDTMQSLKS  156 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~agl-------------aIyD~m~~~~~  156 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=    =|.|+|+..-.             .++..+..++.
T Consensus        23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k  102 (262)
T 3r9q_A           23 TVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSK  102 (262)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTSSCTTSSTTCCCSS
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhhhhHHHHHHHhCCC
Confidence            3556554     77888889999998887655444333321    13344442211             12223446778


Q ss_pred             CeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeC
Q 026750          157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDS  194 (234)
Q Consensus       157 ~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHq  194 (234)
                      ||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-.
T Consensus       103 PvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  138 (262)
T 3r9q_A          103 PVIAAISGHAVAGGIELALWCD--LRVVEEDAVLGVFC  138 (262)
T ss_dssp             CEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECTH
T ss_pred             CEEEEECCeeehhhhHHHHhCC--EEEEeCCCEEecch
Confidence            9999999999999999999999  49999999887643

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=92.47  E-value=0.6  Score=41.37  Aligned_cols=89  Identities=10%  Similarity=-0.054  Sum_probs=61.5

Q ss_pred             ccChhhHHHHHHHHhccccc----CCCCceEEEEeCC------CCCccHHH----------------HHHHHHHh-----
Q 026750          105 NIDEEFSNQILATMLYLDSV----DDSKRVYMYINGP------GGDVTPTL----------------AIYDTMQS-----  153 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~----~~~k~I~L~INSP------GG~v~agl----------------aIyD~m~~-----  153 (234)
                      .++.++..++.+.|..++..    |+.-. .|.|.+-      |+|+..-.                .+++.++.     
T Consensus        59 al~~~m~~eL~~al~~~~~d~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (305)
T 3m6n_A           59 CFSTRLVDDITGYQTNLGQRLNTAGVLAP-HVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGL  137 (305)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHHHHHTCSSC-EEEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGG
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCCCeE-EEEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            48899999999999888753    22212 2333433      34443211                23334433     


Q ss_pred             -cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          154 -LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       154 -~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                       ++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...
T Consensus       138 ~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~  179 (305)
T 3m6n_A          138 GARAHSIALVQGNALGGGFEAALSCH--TIIAEEGVMMGLPEVL  179 (305)
T ss_dssp             GTTCEEEEEECSCEETHHHHHHHHSS--EEEEETTCEEECGGGG
T ss_pred             CCCCCEEEEECCEeehHHHHHHHhCC--EEEEcCCCEEECchhc
Confidence             4889999999999999999999999  4999999998765443

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=92.44  E-value=0.14  Score=44.62  Aligned_cols=96  Identities=11%  Similarity=0.023  Sum_probs=65.3

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCccHHHH----------------------H
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPTLA----------------------I  147 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~agla----------------------I  147 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.    .=|.|+|+..-..                      +
T Consensus        23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (274)
T 3tlf_A           23 TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEG  102 (274)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSGGGGSCCCTT
T ss_pred             EEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            3556543     6778888999999888765544433332    1234555543221                      2


Q ss_pred             HHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       148 yD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      ++.|..++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...
T Consensus       103 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~  149 (274)
T 3tlf_A          103 TPPFRTMAKPVLTAVNGICCGAGMDWVTTTD--IVIASEQATFFDPHVS  149 (274)
T ss_dssp             CCCTTSCCSCEEEEECSEEEGGGHHHHHHSS--EEEEETTCEEECCGGG
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhCC--EEEEcCCCEEECcccc
Confidence            3345667789999999999999999999999  4999999998875443

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=92.38  E-value=0.3  Score=42.51  Aligned_cols=89  Identities=11%  Similarity=0.086  Sum_probs=64.1

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCcc-----------------HHHHHHHHHHhcCCCeEEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVT-----------------PTLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~-----------------aglaIyD~m~~~~~~V~Tv  161 (234)
                      .++.++..++.+.|..++. |+.+  .+.|-+-|      +|+.                 ....++..|..++.||.+.
T Consensus        30 al~~~~~~~L~~al~~~~~-d~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  106 (267)
T 3hp0_A           30 TINDTLIEECLQVLNQCET-STVT--VVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISH  106 (267)
T ss_dssp             CBCSHHHHHHHHHHHHHHH-SSCC--EEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhc-CCCE--EEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3667778888888887765 3222  23334333      3332                 1234667788889999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.|.|.+.|.-|+++||  -|++.++++|-+-...-|
T Consensus       107 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  141 (267)
T 3hp0_A          107 VRGKVNAGGLGFVSATD--IAIADQTASFSLSELLFG  141 (267)
T ss_dssp             ECSEEETTHHHHHHHSS--EEEECTTCEEECCGGGGT
T ss_pred             ECCEEeehHHHHHHhCC--EEEEcCCCEEECchhccC
Confidence            99999999999999999  499999999887655444

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=91.46  E-value=0.36  Score=42.98  Aligned_cols=90  Identities=8%  Similarity=0.017  Sum_probs=64.1

Q ss_pred             CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHH-------HHHHHH---hcCCCeEEEEccccccHHHH
Q 026750          103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA-------IYDTMQ---SLKSPVGTHCVGFAYHLAGF  172 (234)
Q Consensus       103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~agla-------IyD~m~---~~~~~V~Tv~~G~AaS~asl  172 (234)
                      +|.++.+.++.++..+..-.. . .-|+..+++|||....+|..       |...+.   ....|..++..|-+.+.++.
T Consensus       134 gGs~g~~~~~K~~r~ie~A~~-~-~lPlI~l~dsgGar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~a  211 (285)
T 2f9i_B          134 MGSMGSVIGEKICRIIDYCTE-N-RLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSA  211 (285)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHH-T-TCCEEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHT
T ss_pred             cCcCCHHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCcchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHHHH
Confidence            466777777777765554333 2 36899999999998877654       222333   34689999999999777766


Q ss_pred             HHc-CCCCCCEEeccCceEeeeCCC
Q 026750          173 LLA-GGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       173 Ila-aG~kgkR~a~PnAriMIHqP~  196 (234)
                      .++ .|+  -.++.|+|++-+--|.
T Consensus       212 s~a~~~D--~i~a~p~A~i~~aGP~  234 (285)
T 2f9i_B          212 SFASVGD--INLSEPKALIGFAGRR  234 (285)
T ss_dssp             TGGGCCS--EEEECTTCBEESSCHH
T ss_pred             HhhhCCC--EEEEeCCcEEEEcCHH
Confidence            644 455  4789999999987775

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=91.45  E-value=0.27  Score=42.76  Aligned_cols=98  Identities=14%  Similarity=0.058  Sum_probs=67.1

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe-----CCCCCccHHHH------------HHHH--HHhc
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPTLA------------IYDT--MQSL  154 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-----SPGG~v~agla------------IyD~--m~~~  154 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.=+     |.|+|+..-..            +...  +..+
T Consensus        21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (267)
T 3r9t_A           21 VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFI  100 (267)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGTTTCCC
T ss_pred             EEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHHHHHhC
Confidence            4666655     678888899999988886554444444222     23455432111            0011  1256


Q ss_pred             CCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       155 ~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       101 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  142 (267)
T 3r9t_A          101 DKPTIAAVNGTALGGGTELALASD--LVVADERAQFGLPEVKRG  142 (267)
T ss_dssp             SSCEEEEECSEECTHHHHHHHHSS--EEEEETTCEECCGGGGTT
T ss_pred             CCCEEEEECCEEEhHHHHHHHhCC--EEEEcCCCEEECcccccC
Confidence            789999999999999999999999  499999999877555444

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=91.37  E-value=0.21  Score=43.19  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEE----EeCCCCCccHHHH----------HHHHHHhcCCCeE
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPTLA----------IYDTMQSLKSPVG  159 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~----INSPGG~v~agla----------IyD~m~~~~~~V~  159 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|.|.    .=|.|+|+..-..          -+..+ .++.||.
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~kPvI   97 (256)
T 3trr_A           19 LITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTNV-PPRKPII   97 (256)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEETTSSS-CCSSCEE
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhhhHHHh-cCCCCEE
Confidence            3556543     6678888898888888765544433332    1244455432111          01222 5578999


Q ss_pred             EEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       160 Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +.+.|.|.+.|.-|+++||  -|++.++++|.+-...
T Consensus        98 Aav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~  132 (256)
T 3trr_A           98 AAVEGFALAGGTELVLSCD--LVVAGRSAKFGIPEVK  132 (256)
T ss_dssp             EEECSBCCTHHHHHHHTSS--EEEEETTCEECCCGGG
T ss_pred             EEECCeeeechhHHHHhCC--EEEECCCCEEEehhhc
Confidence            9999999999999999999  4999999998765443

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=91.21  E-value=0.34  Score=42.02  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHH-----------------HHHHHhcCC
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI-----------------YDTMQSLKS  156 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaI-----------------yD~m~~~~~  156 (234)
                      +|.|+.+     ++.++..++.+.|..++.++..+-|  .|-+-|....+|.-+                 +..+.. +.
T Consensus        27 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~-~k  103 (265)
T 3qxi_A           27 IITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVG--ILTGAGGSFCAGMDLKAFARGENVVVEGRGLGFTERPP-AK  103 (265)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEE--EEEESTTCCCCSBC-------CCCEETTTEETTTTSCC-SS
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEE--EEECCCCCeeCCCChhhhhccchhhhhhhhhhHHHhhC-CC
Confidence            4556654     6778888999988888765433333  333333333222221                 111112 67


Q ss_pred             CeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       157 ~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      ||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       104 PvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G  143 (265)
T 3qxi_A          104 PLIAAVEGYALAGGTELALATD--LIVAARDSAFGIPEVKRG  143 (265)
T ss_dssp             CEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGGGGT
T ss_pred             CEEEEECCceeHHHHHHHHhCC--EEEEcCCCEEECcccccC
Confidence            9999999999999999999999  499999999876655433

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=91.12  E-value=1.3  Score=41.80  Aligned_cols=98  Identities=11%  Similarity=-0.001  Sum_probs=67.4

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEe-------------CCCCCccHHH---------------
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-------------GPGGDVTPTL---------------  145 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~IN-------------SPGG~v~agl---------------  145 (234)
                      +|.|+-+     ++.++..++.+.|..++.++..+-|.|.=+             |-|+|+..-.               
T Consensus       179 ~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~~~~~~  258 (440)
T 2np9_A          179 RLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRREL  258 (440)
T ss_dssp             EEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhhhhhHHHH
Confidence            4556543     677888899999988876554444444332             2234442210               


Q ss_pred             -HHHHHHH---------------hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          146 -AIYDTMQ---------------SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       146 -aIyD~m~---------------~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                       .+.+.++               .++.||.+.+.|.|.+.|.-|+++||  -|++.++++|.+-...-|
T Consensus       259 ~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCD--irIAae~A~Fglpev~lG  325 (440)
T 2np9_A          259 GYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFD--RVLASSDAYFSLPAAKEG  325 (440)
T ss_dssp             THHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCS--EEEEETTCEEECCCTTTC
T ss_pred             HHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCC--EEEEcCCCEEECchhccC
Confidence             0122222               46789999999999999999999999  499999999888766555

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=90.96  E-value=0.58  Score=47.13  Aligned_cols=104  Identities=14%  Similarity=0.052  Sum_probs=73.9

Q ss_pred             hhcCCcEEE-ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEE
Q 026750           93 ALYRERVIF-IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus        93 ~L~~~RiIf-L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv  161 (234)
                      ...++++.. .+|.++++.+.....-+...+. ...-||..++|.||          |-+.+|-.+.+.+...+.|+.|+
T Consensus       435 p~~~e~~~~~~gG~l~pe~a~KaArfI~lcd~-~f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itV  513 (758)
T 3k8x_A          435 PNSAETLIQEPGQVWHPNSAFKTAQAINDFNN-GEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIY  513 (758)
T ss_dssp             TTCCCEEEEECTTEECHHHHHHHHHHHHHHHH-TSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             cchhhhHHhhcCCCCCHHHHHHHHHHHHHhhh-ccCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEE
Confidence            344566655 4589999876655433333332 12468999999998          56778889999999999999999


Q ss_pred             Ec--cccccHHHHHHcCCC--CCC--EEeccCceEeeeCCCCc
Q 026750          162 CV--GFAYHLAGFLLAGGE--KGN--RSAMPLSRIALDSPAGA  198 (234)
Q Consensus       162 ~~--G~AaS~aslIlaaG~--kgk--R~a~PnAriMIHqP~~~  198 (234)
                      +.  |-+.+.|. +.+++.  ...  .++.|+|++-+=.|.+.
T Consensus       514 I~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~isVM~pEga  555 (758)
T 3k8x_A          514 IPPTGELRGGSW-VVVDPTINADQMEMYADVNARAGVLEPQGM  555 (758)
T ss_dssp             ECTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEESSCHHHH
T ss_pred             EecCCccchHHH-HHhCcccCCCHHHHhcCCCCEEEccCHHHH
Confidence            99  99877554 444421  223  79999999988877653

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.85  E-value=1.5  Score=43.74  Aligned_cols=96  Identities=19%  Similarity=0.159  Sum_probs=71.7

Q ss_pred             EEEECcc----cChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCc---------cHHHHHHHHHHhcCCCeE
Q 026750           99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDV---------TPTLAIYDTMQSLKSPVG  159 (234)
Q Consensus        99 iIfL~g~----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v---------~aglaIyD~m~~~~~~V~  159 (234)
                      +|-|+-+    ++.++..++.+.|..++.++..+-  +.|-+-|      +|+         .+.-.+++.|..++.||.
T Consensus        33 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~F~aGaDl~~~~~~~~~~~~~~~~~~i~~~~kPvI  110 (742)
T 3zwc_A           33 MIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKA--IVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVL  110 (742)
T ss_dssp             EEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCE--EEEEESTTCSBCCBCSSSCCSSCSCSHHHHHHHHHHHCSSCEE
T ss_pred             EEEeCCCcccCCCHHHHHHHHHHHHHHhhCCCCeE--EEEECCCCccccCcChHhhhccChhHHHHHHHHHHHhCCCCEE
Confidence            4556654    778888899999988876554443  3344444      332         233468889999999999


Q ss_pred             EEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       160 Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.+-|.|...|.-|+++||  -|++.++++|-+-...-|
T Consensus       111 Aai~G~a~GGG~elalacD--~ria~~~a~fg~pev~lG  147 (742)
T 3zwc_A          111 AAIQGVALGGGLELALGCH--YRIANAKARVGLPEVTLG  147 (742)
T ss_dssp             EEECSEEETHHHHHHHTSS--EEEEETTCEEECGGGGGT
T ss_pred             EEECccchHHHHHHHHhcC--EEEEcCCCEEECcccCcc
Confidence            9999999999999999999  599999999876544433

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=90.74  E-value=0.53  Score=47.65  Aligned_cols=103  Identities=14%  Similarity=0.082  Sum_probs=75.0

Q ss_pred             hhcCCcEEE-ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEE
Q 026750           93 ALYRERVIF-IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus        93 ~L~~~RiIf-L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv  161 (234)
                      .-.++++.. ++|.++++.+.....-+...+.  ..-||..++|.||          |-+.+|-.+.+.+...+.|+.|+
T Consensus       450 ~~~~e~~~~~~gG~l~~~~a~KaarfI~~cd~--f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itv  527 (793)
T 2x24_A          450 LDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNR--EKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIY  527 (793)
T ss_dssp             TTCCCEEEEECTTEECHHHHHHHHHHHHHHHT--TTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             cchhhhhhhhcCCcccHHHHHHHHHHHHHhcc--CCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEE
Confidence            344666664 4689999876654444443333  2468999999999          66788889999999999999999


Q ss_pred             E--ccccccHHHHHHcCCCCC-C---EEeccCceEeeeCCCCc
Q 026750          162 C--VGFAYHLAGFLLAGGEKG-N---RSAMPLSRIALDSPAGA  198 (234)
Q Consensus       162 ~--~G~AaS~aslIlaaG~kg-k---R~a~PnAriMIHqP~~~  198 (234)
                      +  .|-+.+ |++++++..-+ .   .++.|+|++-+=.|.+.
T Consensus       528 I~r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp~A~~~VM~pEga  569 (793)
T 2x24_A          528 IPPYAEVRG-GSWAVMDTSINPLCIEMYADRESRASVLEPEGT  569 (793)
T ss_dssp             ECTTCEEEH-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHHH
T ss_pred             EecCCcccc-hhHHhhhcccCccHHHHhhhccCEEEecCHHHH
Confidence            9  788765 66666643222 2   48999999988877654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=89.62  E-value=0.99  Score=44.65  Aligned_cols=91  Identities=15%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccH------------------HHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP------------------TLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~a------------------glaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++..++.+.|..++.++..+-|.|.=    =|-|+|+..                  ...+++.|..++.||.+.+-
T Consensus        32 l~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  111 (715)
T 1wdk_A           32 FNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAIN  111 (715)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            46677888888888887654443333321    122333311                  12356677788999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      |.|.+.|.-|+++|+  -|++.++++|-+-...-|
T Consensus       112 G~a~GgG~elalacD--~ria~~~a~fglpev~lG  144 (715)
T 1wdk_A          112 GIALGGGLEMCLAAD--FRVMADSAKIGLPEVKLG  144 (715)
T ss_dssp             SCEETHHHHHHHTSS--EEEEETTCEEECGGGGGT
T ss_pred             CEeeHHHHHHHHHCC--EEEEeCCCEEeChhhccC
Confidence            999999999999999  499999999776544433

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=83.68  E-value=0.7  Score=45.84  Aligned_cols=92  Identities=15%  Similarity=0.073  Sum_probs=60.5

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEE----eCCCCCccHHH---------------HHH---HHHHhcCCCeEEEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPTL---------------AIY---DTMQSLKSPVGTHC  162 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~I----NSPGG~v~agl---------------aIy---D~m~~~~~~V~Tv~  162 (234)
                      .++.++..++.+.|..++.++..+-|.|.=    =|-|+|+..-.               .++   +.|..++.||.+.+
T Consensus        30 al~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  109 (725)
T 2wtb_A           30 SLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAI  109 (725)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCTTCCEEEEEESSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEEE
Confidence            356677888888888887654444333321    13344543210               122   23445678999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|.|.+.|.-|+++|+  -|++.++++|-+-...-|
T Consensus       110 ~G~a~GgG~elalacD--~ria~~~a~fglpev~lG  143 (725)
T 2wtb_A          110 DGLALGGGLELAMACH--ARISAPAAQLGLPELQLG  143 (725)
T ss_dssp             CSEEETHHHHHHHHSS--EEEECTTCEEECCGGGGT
T ss_pred             CCccCcccHHHHHhCC--EEEEcCCCEEeCchhccC
Confidence            9999999999999999  599999999766444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	234
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	4e-45
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	4e-39
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	3e-32
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	7e-31
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	1e-25

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score =  146 bits (371), Expect = 4e-45
 Identities = 59/148 (39%), Positives = 93/148 (62%), Gaps = 3/148 (2%)

Query: 81  GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGD 140
           GE S+   D+++ L +ERVIF+   +++  +N I+A ML+L++ +  K +Y+YIN PGG 
Sbjct: 3   GERSF---DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGV 59

Query: 141 VTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR 200
           +T  ++IYDTMQ +K  V T C+G A  +  FLL  G KG R  +P SR+ +  P G  +
Sbjct: 60  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ 119

Query: 201 GQADDIRNEADELLRVRDYIFKELSRKT 228
           GQA DI   A E+L+V+  + + ++  T
Sbjct: 120 GQATDIEIHAREILKVKGRMNELMALHT 147

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  131 bits (332), Expect = 4e-39
 Identities = 62/158 (39%), Positives = 101/158 (63%), Gaps = 4/158 (2%)

Query: 72  TPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRV 130
            P V+ +T  GE ++   D+++ L RER++ +   ID+  ++ ++A +L+L S  + K +
Sbjct: 3   IPIVVEQTGRGERAY---DIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 59

Query: 131 YMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRI 190
           +MYIN PGG VT  LAIYDTMQ + +P+ T CVG A  +   LLA G  G R ++P SRI
Sbjct: 60  HMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 119

Query: 191 ALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228
            +  P+G ARGQA DI  +A+E+++++  ++   ++ T
Sbjct: 120 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHT 157

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  113 bits (284), Expect = 3e-32
 Identities = 50/140 (35%), Positives = 82/140 (58%)

Query: 89  DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIY 148
            ++  L  ER+IF+G  +++E +N++ A +L L + D SK + +YIN PGG ++  +AIY
Sbjct: 5   SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 64

Query: 149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN 208
           DTM      + T+ +G A  +  FLLA G KG R A+P +RI +  P G   G A DI  
Sbjct: 65  DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAI 124

Query: 209 EADELLRVRDYIFKELSRKT 228
           +A++   ++  +F+  +  T
Sbjct: 125 QAEQFAVIKKEMFRLNAEFT 144

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score =  110 bits (276), Expect = 7e-31
 Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 6/159 (3%)

Query: 73  PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVY 131
           P V+ +T  GE S+   D+++ L ++R+I +   +++  +N ++A +L+LD+ D +K +Y
Sbjct: 2   PVVIEQTSRGERSY---DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIY 58

Query: 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIA 191
           +Y+N PGG V+  LAI DTM  +K+ V T  +G A  +   + + G KG R  +P +   
Sbjct: 59  LYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYM 118

Query: 192 LDSPAGAA--RGQADDIRNEADELLRVRDYIFKELSRKT 228
           +  P G      Q  D+    + LL+ R+ + K L+  +
Sbjct: 119 IHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENS 157

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score = 96.7 bits (240), Expect = 1e-25
 Identities = 43/141 (30%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 89  DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIY 148
           D+    +++R+I++   I+++ ++++++ +LYLD+  +   + +YIN PGG +   LAI 
Sbjct: 10  DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDN-INHNDIKIYINSPGGSINEGLAIL 68

Query: 149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN 208
           D    +KS + T   G    +A  +LA G+KG R ++P  RI +  P G A G   DI  
Sbjct: 69  DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEI 128

Query: 209 EADELLRVRDYIFKELSRKTD 229
           +  E+L ++  ++  LS  T+
Sbjct: 129 QTKEILYLKKLLYHYLSSFTN 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	100.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	100.0
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	100.0
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.54
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.35
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	96.05
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.03
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	95.7
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	95.39
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	95.36
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	95.19
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.11
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	95.1
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	95.04
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	94.85
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	94.82
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	94.74
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	94.51
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	94.11
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	93.98
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	93.65
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	93.63
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	92.93
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	90.29
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	89.36
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	85.43

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.6e-50  Score=344.02  Aligned_cols=150  Identities=38%  Similarity=0.648  Sum_probs=144.7

Q ss_pred             CchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        85 ~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      .+|+|||++||++|||||+|+|+++++++++++|++|+.++++++|+||||||||++++|++|||+|++++++|+|+|.|
T Consensus        14 ~~~~Di~s~l~~~Riifl~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~~~~V~tv~~G   93 (193)
T d1tg6a1          14 ERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVG   93 (193)
T ss_dssp             ---CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSCSCEEEEEEE
T ss_pred             chhhhHhHHHhccCEEEECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCcccHHHHHHHHHHHHhhcCceEEEEcc
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      .|||||++|++||++|+|+++|||++|||||++++.|++.|+++++++++++++.+.++|+++||++.++
T Consensus        94 ~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~  163 (193)
T d1tg6a1          94 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQV  163 (193)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             chHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999753

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=7.3e-49  Score=332.83  Aligned_cols=161  Identities=29%  Similarity=0.546  Sum_probs=138.0

Q ss_pred             CCcceeecCCCCCCchhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHH
Q 026750           72 TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM  151 (234)
Q Consensus        72 ~P~v~~~~~g~~~~~w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m  151 (234)
                      +|+|++++++.++  +.|||++||++|||||+|+|++++++.++++|++|+.+++.++|+||||||||+|.+|++|||+|
T Consensus         1 ~p~v~~~~~~~~~--~~di~s~Ll~~rii~l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v~~glai~d~i   78 (192)
T d1y7oa1           1 IPVVIEQTSRGER--SYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTM   78 (192)
T ss_dssp             CCEECC---------CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCcc--hhhhhhHHhccCEEEECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCCCCHHHHHHHHHHH
Confidence            5889988886554  46999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccC--HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026750          152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQ--ADDIRNEADELLRVRDYIFKELSRKTD  229 (234)
Q Consensus       152 ~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~--a~di~~~a~el~~lr~~i~~iya~~TG  229 (234)
                      ++++.+|+|+|.|.|||||++|++||++|+|+++|||++|||||+++..|+  +.|++++++|+.++++.+.++|+++||
T Consensus        79 ~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg  158 (192)
T d1y7oa1          79 NFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSG  158 (192)
T ss_dssp             HHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999998876  568899999999999999999999999


Q ss_pred             CCCCC
Q 026750          230 YEGFK  234 (234)
Q Consensus       230 ~~~ek  234 (234)
                      ++.++
T Consensus       159 ~~~~~  163 (192)
T d1y7oa1         159 QSMEK  163 (192)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            99763

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.5e-45  Score=308.80  Aligned_cols=146  Identities=34%  Similarity=0.612  Sum_probs=133.4

Q ss_pred             chHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcccccc
Q 026750           89 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYH  168 (234)
Q Consensus        89 Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~AaS  168 (234)
                      +||++|+++|||||+|+||++++++++++|++|+.+++.++|+||||||||+|.+|++|||+|+.++.+|+|+|.|.|+|
T Consensus         5 ~i~~~l~~~rii~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~gl~i~d~i~~~~~~v~t~~~G~aaS   84 (179)
T d2cbya1           5 SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAAS   84 (179)
T ss_dssp             HHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEEEEET
T ss_pred             HHHHHHHhCCEEEECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCCCCHHHHHHHHHHHHhhccceeeehhhhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 026750          169 LAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGFK  234 (234)
Q Consensus       169 ~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~ek  234 (234)
                      ||++|+++|+||+|+++|||++|||||++++.|++.|+++++++++++++.+.++|+++||++.++
T Consensus        85 ~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~  150 (179)
T d2cbya1          85 MGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIER  150 (179)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999753

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-45  Score=305.30  Aligned_cols=147  Identities=38%  Similarity=0.669  Sum_probs=144.1

Q ss_pred             hhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcccc
Q 026750           87 WVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFA  166 (234)
Q Consensus        87 w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~A  166 (234)
                      -+|||++|+++|+|||+|+|+++++++++++|++|+.+++.++|+||||||||++++|++|||+|+.++.||+|+|.|.|
T Consensus         6 ~~di~s~L~~~riI~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~~~~v~tv~~G~a   85 (183)
T d1yg6a1           6 SFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQA   85 (183)
T ss_dssp             CCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             hhhHhHHHhccCEEEECCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCCccHHHHHHHHHHHHhCCCCEEEEEEEEe
Confidence            38999999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       167 aS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      ||||++|++||+||+|+++|||++|||||+++..|++.|++.++++++++++.+.++|+++||++.|
T Consensus        86 aS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e  152 (183)
T d1yg6a1          86 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLE  152 (183)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999975

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.4e-43  Score=299.79  Aligned_cols=146  Identities=29%  Similarity=0.576  Sum_probs=134.4

Q ss_pred             hhchHhhhcCCcEEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHHHHHHHHHhcCCCeEEEEcccc
Q 026750           87 WVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFA  166 (234)
Q Consensus        87 w~Di~~~L~~~RiIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~aglaIyD~m~~~~~~V~Tv~~G~A  166 (234)
                      +.|++++||++|||||+|+||++++++++++|++|+.++ .++|+||||||||+|++|++|||+|+.++.+|+|+|.|.|
T Consensus         8 ~~d~~~~l~~~rii~l~g~Id~~~~~~~i~~l~~l~~~~-~~~I~l~INS~GG~v~~g~ai~d~i~~~~~~v~tv~~G~a   86 (190)
T d2f6ia1           8 KKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLV   86 (190)
T ss_dssp             SHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHC-CSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             hhhHHHHHHcCcEEEECCeeCHHHHHHHHHHHHHHhccC-CCCeEEEEeCchhhhhHHHHHHHHHHhhCCceEEEEeccc
Confidence            689999999999999999999999999999999999876 4789999999999999999999999999999999999999


Q ss_pred             ccHHHHHHcCCCCCCEEeccCceEeeeCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026750          167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTDYEGF  233 (234)
Q Consensus       167 aS~aslIlaaG~kgkR~a~PnAriMIHqP~~~~~G~a~di~~~a~el~~lr~~i~~iya~~TG~~~e  233 (234)
                      +|||++|+++|++|+|+++|||++|+|||+++.+|+..|++.++++++++++.+.++|+++||++.|
T Consensus        87 aS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~  153 (190)
T d2f6ia1          87 ASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVE  153 (190)
T ss_dssp             CHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             cchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999975

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0012  Score=57.93  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=59.9

Q ss_pred             CCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          127 SKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       127 ~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .-||..+|++||          |...++-.....|-..+.|+.+++.|-+.|.|++.++.++  +.++++||.+.+=.|.
T Consensus       151 ~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d--~v~m~~~a~~svispE  228 (316)
T d2f9ya1         151 KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGD--KVNMLQYSTYSVISPE  228 (316)
T ss_dssp             TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCS--EEEECTTCEEESSCHH
T ss_pred             CcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhh--HHHHHhhhHHhhccch
Confidence            368999999999          4456666667777788899999999999999999999998  5899999999988887


Q ss_pred             Cc
Q 026750          197 GA  198 (234)
Q Consensus       197 ~~  198 (234)
                      +.
T Consensus       229 g~  230 (316)
T d2f9ya1         229 GC  230 (316)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.003  Score=53.84  Aligned_cols=94  Identities=20%  Similarity=0.248  Sum_probs=72.2

Q ss_pred             CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHH
Q 026750          103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGF  172 (234)
Q Consensus       103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~asl  172 (234)
                      +|.|+.+.+.....-+...+..  .=+|..++|+||          |-+.+|-.+..++...+.|..|++.|-+++.|.+
T Consensus        80 ~G~~~~~~a~Kaa~fi~lc~~~--~iPli~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~  157 (264)
T d1vrga2          80 AGVLDIDSSDKAARFIRFLDAF--NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYI  157 (264)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             ccchhhhhHHHHHHHHHHHHHh--CCceEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhh
Confidence            4779988766555444444433  258999999999          6678888999999999999999999999998887


Q ss_pred             HHcCC--CCCCEEeccCceEeeeCCCCc
Q 026750          173 LLAGG--EKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       173 IlaaG--~kgkR~a~PnAriMIHqP~~~  198 (234)
                      -+++.  .....++.|+|++.+=.|.+.
T Consensus       158 am~~~~~~~d~~~awP~a~~~vm~pe~a  185 (264)
T d1vrga2         158 AMGSKHLGADMVLAWPSAEIAVMGPEGA  185 (264)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             hccCCccCCCeeeeccceeEEecCHHHh
Confidence            77641  223588899999888777654

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.05  E-value=0.016  Score=47.83  Aligned_cols=86  Identities=12%  Similarity=0.147  Sum_probs=66.2

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccHH--------------------------HHHHHHHHh
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTPT--------------------------LAIYDTMQS  153 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~ag--------------------------laIyD~m~~  153 (234)
                      ++.++..++.+.|..++.+++.+  .|.|.+-      |+++..-                          ..+++.|..
T Consensus        28 ls~~m~~el~~~l~~~~~d~~v~--~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (275)
T d1dcia_          28 MNRAFWRELVECFQKISKDSDCR--AVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEK  105 (275)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCC--EEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEeccccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHh
Confidence            78888899999999887644332  2444554      4554322                          236678899


Q ss_pred             cCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       154 ~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      .+.||.+.+.|.|...|.-|++++|  -|++.++++|-+...
T Consensus       106 ~~kPvIaav~G~a~GgG~~lal~~D--~ria~~~a~f~~pe~  145 (275)
T d1dcia_         106 CPKPVIAAIHGGCIGGGVDLISACD--IRYCTQDAFFQVKEV  145 (275)
T ss_dssp             SSSCEEEEECSEEETHHHHHHTTSS--EEEEETTCEEECCGG
T ss_pred             cCCCEEEEEeeEeehhhHHHHhhcC--chhhccCccccchhc
Confidence            9999999999999999999999999  499999998876544

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.03  E-value=0.0051  Score=52.37  Aligned_cols=94  Identities=18%  Similarity=0.186  Sum_probs=71.8

Q ss_pred             CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHH
Q 026750          103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGF  172 (234)
Q Consensus       103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~asl  172 (234)
                      +|.|+.+.+.....-+...+..  .=+|..++|+||          |-+..|-.+..++.....|..|++.|-|++.|.+
T Consensus        80 ~G~~~~~~a~Kaarfi~lc~~~--~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~  157 (264)
T d1on3a2          80 SGCLDINASDKAAEFVNFCDSF--NIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYL  157 (264)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             ccccChHHHHHHHHHHHHHHhc--CCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCcccc
Confidence            6778887665444333333332  358999999999          6778899999999999999999999999998888


Q ss_pred             HHcCCC--CCCEEeccCceEeeeCCCCc
Q 026750          173 LLAGGE--KGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       173 IlaaG~--kgkR~a~PnAriMIHqP~~~  198 (234)
                      -++++.  ...+++.|+|++-+=.|.+.
T Consensus       158 am~g~~~~~d~~~aWP~A~~~vMg~Ega  185 (264)
T d1on3a2         158 AMCNRDLGADAVYAWPSAEIAVMGAEGA  185 (264)
T ss_dssp             TTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             ccccccCChhheeeHHhhHhhhccHHHH
Confidence            777532  23578888888888777654

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.70  E-value=0.0026  Score=54.20  Aligned_cols=95  Identities=18%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             ECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHH
Q 026750          102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAG  171 (234)
Q Consensus       102 L~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~as  171 (234)
                      ++|.|+.+.+.....-+..-+..  .=||..++|+||          |-+.++-.+..++...+.|..|++.|-+.+.|.
T Consensus        77 ~~G~~~~~~a~Ka~~fi~lc~~~--~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~  154 (263)
T d1xnya2          77 FAGCLDITASEKAARFVRTCDAF--NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAY  154 (263)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             ecCCcchhhHHHHHHHHHHHHHh--CCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCccccce
Confidence            34789988776555544444433  358999999999          556788889999999999999999999999777


Q ss_pred             HHHcCC--CCCCEEeccCceEeeeCCCCc
Q 026750          172 FLLAGG--EKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       172 lIlaaG--~kgkR~a~PnAriMIHqP~~~  198 (234)
                      +.+++.  .....++.|+|++-+=.|.+.
T Consensus       155 ~~m~~~~~~~d~~~awP~a~~gvm~pe~a  183 (263)
T d1xnya2         155 DVMGSKHLGADLNLAWPTAQIAVMGAQGA  183 (263)
T ss_dssp             HHTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             eccCCcccCCcEEEEcchhhhhccCHHHH
Confidence            665542  223689999999988777643

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=95.39  E-value=0.039  Score=44.68  Aligned_cols=90  Identities=12%  Similarity=0.135  Sum_probs=67.1

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCcc------------------HHHHHHHHHHhcCCCeEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVT------------------PTLAIYDTMQSLKSPVGT  160 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~------------------aglaIyD~m~~~~~~V~T  160 (234)
                      .++.++..++...+..++.++..+  .|.|.+-|      |+..                  ....++..|..++.||.+
T Consensus        22 al~~~~~~el~~~l~~~~~d~~v~--~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa   99 (253)
T d1uiya_          22 PLSPEMALSLLQALDDLEADPGVR--AVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVA   99 (253)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCTTCC--EEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEecccccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEE
Confidence            477888899999998887654333  33444443      3321                  122345668889999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+.|.|...|..|++++|  -|++.+++++.++....+
T Consensus       100 av~G~a~GgG~~lal~~D--~ria~~~a~~~~~e~~~g  135 (253)
T d1uiya_         100 AVNGPAVAGGAGLALACD--LVVMDEEARLGYTEVKIG  135 (253)
T ss_dssp             EECSCEETHHHHHHHTSS--EEEEETTCEEECCHHHHT
T ss_pred             EeCeEEehhhHHHHhhhh--hhhhhhhhHHhhhhcccc
Confidence            999999999999999999  599999999988765544

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.063  Score=43.77  Aligned_cols=88  Identities=14%  Similarity=0.081  Sum_probs=67.4

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHH-------------------------HHHHHHHHhcCCCeEE
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT-------------------------LAIYDTMQSLKSPVGT  160 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ag-------------------------laIyD~m~~~~~~V~T  160 (234)
                      ++.++..++.+.|..++.++   .+.+.+.+-|+...+|                         ..++..|..++.||.+
T Consensus        27 ls~~~~~~l~~~l~~~~~d~---~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa  103 (245)
T d2f6qa1          27 INTEMYHEIMRALKAASKDD---SIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA  103 (245)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS---CSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCC---ceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEE
Confidence            77788889999888887543   3456676655432222                         2456678889999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+.|.|...|.-|++++|  -|++.++++|.+-...-|
T Consensus       104 ~v~G~a~GgG~~la~~~D--~~ia~~~a~f~~pe~~~G  139 (245)
T d2f6qa1         104 VVNGPAVGISVTLLGLFD--AVYASDRATFHTPFSHLG  139 (245)
T ss_dssp             EECSCEETHHHHGGGGCS--EEEEETTCEEECCTGGGT
T ss_pred             EECCccccccccchhhhh--hhhhhccCeEecccccCC
Confidence            999999999999999999  599999999987655434

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.038  Score=45.62  Aligned_cols=88  Identities=11%  Similarity=0.062  Sum_probs=65.2

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeCC------CCCccH-----------------HHHHHHHHHhcCCCeEEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTP-----------------TLAIYDTMQSLKSPVGTH  161 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP------GG~v~a-----------------glaIyD~m~~~~~~V~Tv  161 (234)
                      .++.++..++...+..++.++..+  .|.|.+-      |+|+..                 ...++..|..++.||.+.
T Consensus        32 al~~~m~~el~~~~~~~~~d~~vr--~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~  109 (263)
T d1wz8a1          32 AMPPALHRGLARVWRDLEAVEGVR--AVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAA  109 (263)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCTTCS--EEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCCe--EEEEecccccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeee
Confidence            467788888998888887654333  3334443      454421                 223566788889999999


Q ss_pred             EccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          162 CVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       162 ~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +.|.|...|..|++++|-  |++.++++|.+....
T Consensus       110 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~  142 (263)
T d1wz8a1         110 VEKVAVGAGLALALAADI--AVVGKGTRLLDGHLR  142 (263)
T ss_dssp             ECSEEETHHHHHHHHSSE--EEEETTCEEECCHHH
T ss_pred             cccccccccccccccccc--ccccccccccccccc
Confidence            999999999999999994  999999998776543

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.11  E-value=0.019  Score=48.81  Aligned_cols=92  Identities=17%  Similarity=0.110  Sum_probs=69.4

Q ss_pred             CcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEccccccHHHH
Q 026750          103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGF  172 (234)
Q Consensus       103 ~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS~asl  172 (234)
                      +|.++.+.+.....-+..-+. . .-+|..++|+||          |-+..|-.+..++...+.|..|++.|-+++.|.+
T Consensus        83 ~G~~~~~~~~Ka~rfi~lc~~-~-~iPlv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~  160 (271)
T d2a7sa2          83 AGCLDINASEKAARFVRTCDC-F-NIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYC  160 (271)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHH-T-TCCEEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHH-h-CCceEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhh
Confidence            478898877654433333332 2 358999999999          5678888999999999999999999999998777


Q ss_pred             HHcCC--CCCCEEeccCceEeeeCCC
Q 026750          173 LLAGG--EKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       173 IlaaG--~kgkR~a~PnAriMIHqP~  196 (234)
                      .+++.  .....++.|+|++-+=.|.
T Consensus       161 am~~~~~~~d~~~AwP~A~igvMgpe  186 (271)
T d2a7sa2         161 VMGSKDMGCDVNLAWPTAQIAVMGAS  186 (271)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHH
T ss_pred             hhcccccccceEEEecceeEeecCHH
Confidence            66652  2235789999998776554

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=95.10  E-value=0.02  Score=47.49  Aligned_cols=90  Identities=9%  Similarity=0.013  Sum_probs=67.6

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHH--------------------------HHHHHHHHhcCCCe
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT--------------------------LAIYDTMQSLKSPV  158 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ag--------------------------laIyD~m~~~~~~V  158 (234)
                      .++.++..++.+.|..++.++..+  .|.|.+.|+...+|                          ..+++.|..++.||
T Consensus        26 al~~~~~~el~~~l~~~~~d~~i~--~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  103 (269)
T d1nzya_          26 ALSVKAMQEVTDALNRAEEDDSVG--AVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPV  103 (269)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCC--EEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEeCCcccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchh
Confidence            367788889999998888654332  34445555433222                          13566678899999


Q ss_pred             EEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       159 ~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+.+.|.|...|..|++++|  -|++.+++++.+.....+
T Consensus       104 Iaav~G~a~GgG~~lal~~D--~ria~~~a~~~~~~~~~g  141 (269)
T d1nzya_         104 LAAINGVAAGGGLGISLASD--MAICADSAKFVCAWHTIG  141 (269)
T ss_dssp             EEEECSEEETHHHHHHHHSS--EEEEETTCEEECCHHHHT
T ss_pred             ehhhhhhcCCCceeeeeccc--Hhhhhhhhhhcccccccc
Confidence            99999999999999999999  599999999988766543

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=95.04  E-value=0.096  Score=42.29  Aligned_cols=95  Identities=11%  Similarity=0.162  Sum_probs=68.7

Q ss_pred             EEEECcc-----cChhhHHHHHHHHhcccccCCCCceE-EEEeCCCCCc-----------------------cHHHHHHH
Q 026750           99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVY-MYINGPGGDV-----------------------TPTLAIYD  149 (234)
Q Consensus        99 iIfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~-L~INSPGG~v-----------------------~aglaIyD  149 (234)
                      +|-|+.+     ++.++..++.+.+..++.++   .+. +.|-|-||..                       .....++.
T Consensus        12 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~---~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   88 (230)
T d2a7ka1          12 VITLDHPNKHNPFSRTLETSVKDALARANADD---SVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQ   88 (230)
T ss_dssp             EEEECCSSTTCBCCHHHHHHHHHHHHHHHHCT---TCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCC---cccccceeccchhhhhhhcccccccccccccccccchhhhhhhhh
Confidence            3556543     67788888888888777543   343 4555555431                       12234677


Q ss_pred             HHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       150 ~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .|..++.||.+.+.|.|...|.-|++++|  -|++.++++|.+-....|
T Consensus        89 ~i~~~~kpvIaav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~G  135 (230)
T d2a7ka1          89 AVLNVNKPTIAAVDGYAIGMGFQFALMFD--QRLMASTANFVMPELKHG  135 (230)
T ss_dssp             HHHTCCSCEEEEECSEEETHHHHHHTTSS--EEEEETTCEEECCGGGGT
T ss_pred             cccchhcceeeecccccccccccchhccc--hhhccccchhhhcccccc
Confidence            88889999999999999999999999999  499999999876444333

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.043  Score=45.27  Aligned_cols=88  Identities=15%  Similarity=0.147  Sum_probs=66.4

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeCCC-------CCc---------------cHHHHHHHHHHhcCCCeEEEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDV---------------TPTLAIYDTMQSLKSPVGTHC  162 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG-------G~v---------------~aglaIyD~m~~~~~~V~Tv~  162 (234)
                      .++.++..++...+..++.+++.+-|  .|-+-|       ++.               .....++..|..++.||.+.+
T Consensus        29 al~~~~~~~l~~~l~~~~~d~~v~~v--Vl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav  106 (266)
T d1hzda_          29 SLSKNLIKMLSKAVDALKSDKKVRTI--IIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAI  106 (266)
T ss_dssp             CBCTTHHHHHHHHHHHHHHCSSCSEE--EEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcceE--EEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCccccccc
Confidence            37788899999999988865543333  333333       221               233357778889999999999


Q ss_pred             ccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       163 ~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      .|.|...|.-|++++|-  |++.++++|.+..-.
T Consensus       107 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~  138 (266)
T d1hzda_         107 DGLALGGGLELALACDI--RVAASSAKMGLVETK  138 (266)
T ss_dssp             SEEEETHHHHHHHHSSE--EEEETTCEEECCGGG
T ss_pred             ccccccccceeccccce--eeecCCcEEeecccc
Confidence            99999999999999994  999999998765544

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.092  Score=43.06  Aligned_cols=86  Identities=15%  Similarity=0.226  Sum_probs=64.3

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCCC-------Cc--------------cHHHHHHHHHHhcCCCeEEEEcc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG-------DV--------------TPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG-------~v--------------~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ++.++..++.+.|..++. ++. ...|..-+.||       |+              .....+++.|..++.||.+.+.|
T Consensus        28 l~~~~~~~l~~al~~~~~-~~~-~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  105 (261)
T d1ef8a_          28 LSKVFIDDLMQALSDLNR-PEI-RCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEG  105 (261)
T ss_dssp             CCHHHHHHHHHHHHHTCS-TTC-CEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHhC-CCC-EEEEEeccccchhhcccccccccccCCccccccccchhhhHHHHHhCchhhhhcccc
Confidence            677888889988888753 322 23333334443       32              22347899999999999999999


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      .|...|..|++++|  -|++.++++|-+-..
T Consensus       106 ~a~GgG~~lal~cD--~ria~~~a~~~~pe~  134 (261)
T d1ef8a_         106 SVWGGAFEMIMSSD--LIIAASTSTFSMTPV  134 (261)
T ss_dssp             EEETHHHHHHHHSS--EEEEETTCEEECCHH
T ss_pred             cccchhhhhhhhhh--hhhhhHhHHHhhhhc
Confidence            99999999999999  499999998765433

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=94.74  E-value=0.022  Score=49.07  Aligned_cols=77  Identities=10%  Similarity=0.015  Sum_probs=59.9

Q ss_pred             EEEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEcccccc
Q 026750           99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYH  168 (234)
Q Consensus        99 iIfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G~AaS  168 (234)
                      ....+|.|+.+.+.....-+...+..  .-+|..++|+||          |.+..|-.+..++.....|..|+++|-+++
T Consensus        92 ~~~~~G~l~~~~a~K~~rfi~lc~~~--~iPlv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G  169 (299)
T d1pixa3          92 SVGIGGKLYRQGLVKMNEFVTLCARD--RLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTA  169 (299)
T ss_dssp             CCEETTEECHHHHHHHHHHHHHHHHT--TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEET
T ss_pred             CcCCCCccCHHHHHHHHHHHHHHHHc--CCeEEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEeccccc
Confidence            44589999998877655544444332  358999999999          456777888899999999999999999999


Q ss_pred             HHHHHHcCC
Q 026750          169 LAGFLLAGG  177 (234)
Q Consensus       169 ~aslIlaaG  177 (234)
                      .|.+.+++.
T Consensus       170 ~a~~am~g~  178 (299)
T d1pixa3         170 AAHYVLGGP  178 (299)
T ss_dssp             THHHHTTCT
T ss_pred             ccccccccC
Confidence            888766653

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=94.51  E-value=0.031  Score=45.95  Aligned_cols=88  Identities=7%  Similarity=0.034  Sum_probs=65.5

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCC-------c---------------cHHHHHHHHHHhcCCCeEEEEc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGD-------V---------------TPTLAIYDTMQSLKSPVGTHCV  163 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~-------v---------------~aglaIyD~m~~~~~~V~Tv~~  163 (234)
                      ++.++..++.+.|..++.++..+  .+.|.|-|+.       +               .....++..|..++.||.+.+.
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~v~--~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~  104 (249)
T d1sg4a1          27 LSLEFLTELVISLEKLENDKSFR--GVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN  104 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCC--EEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcc--EEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhc
Confidence            56778888888888877543322  3444555532       1               1222466778888999999999


Q ss_pred             cccccHHHHHHcCCCCCCEEeccCceEeeeCCCC
Q 026750          164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG  197 (234)
Q Consensus       164 G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~  197 (234)
                      |.|...|.-|++++|  -|++.+++++.+..|..
T Consensus       105 G~a~GgG~~lal~~D--~~ia~~~a~f~~~~pe~  136 (249)
T d1sg4a1         105 GACPAGGCLVALTCD--YRILADNPRYCIGLNET  136 (249)
T ss_dssp             EEBCHHHHHHHTTSS--EEEEECCTTCCBSCCGG
T ss_pred             ccccccccccccccc--cceeecccccccccccc
Confidence            999999999999999  59999999998877753

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.074  Score=43.67  Aligned_cols=87  Identities=15%  Similarity=0.119  Sum_probs=64.9

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHH-------------------------HHHHHHHHhcCCCeE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT-------------------------LAIYDTMQSLKSPVG  159 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~ag-------------------------laIyD~m~~~~~~V~  159 (234)
                      .++.++..++...|..++.+ +.+  .|.|.+-|....+|                         ..++..|..++.||.
T Consensus        26 als~~~~~el~~al~~~~~d-~~~--~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~I  102 (258)
T d2fw2a1          26 ALNTEVIKEMVNALNSAAAD-DSK--LVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIV  102 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHS-SCS--EEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHcC-CCE--EEEEecCccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeee
Confidence            46678888888888887753 333  45566665443222                         235567788899999


Q ss_pred             EEEccccccHHHHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       160 Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      +.+.|.|...|..|++++|-  |++.++++|-+....
T Consensus       103 aav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~  137 (258)
T d2fw2a1         103 VSVNGPAIGLGASILPLCDL--VWANEKAWFQTPYTT  137 (258)
T ss_dssp             EEECSCEETHHHHTGGGSSE--EEEETTCEEECCHHH
T ss_pred             eecccccccccccccccccc--cceecccceeecccc
Confidence            99999999999999999994  999999998765443

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.98  E-value=0.09  Score=44.56  Aligned_cols=90  Identities=13%  Similarity=0.123  Sum_probs=65.9

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeCCC------CCccH------------------HHHHHHHHHhcCCCeEE
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP------------------TLAIYDTMQSLKSPVGT  160 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG------G~v~a------------------glaIyD~m~~~~~~V~T  160 (234)
                      .++.++..++...+..++.+++.+-  |.|.+-|      +++..                  ...++..|..++.||.+
T Consensus        31 al~~~~~~el~~al~~~~~d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  108 (310)
T d1wdka4          31 KFNRLTLNELRQAVDAIKADASVKG--VIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVA  108 (310)
T ss_dssp             BCCHHHHHHHHHHHHHHHHCTTCCE--EEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCcccee
Confidence            4778888888888888876543332  3344433      33211                  12366778889999999


Q ss_pred             EEccccccHHHHHHcCCCCCCEEeccCceEeeeCCCCc
Q 026750          161 HCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       161 v~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP~~~  198 (234)
                      .+.|.|...|.-|+++||  -|++.++++|-+....-|
T Consensus       109 av~G~a~GgG~elal~cD--~ria~~~a~f~~pe~~~G  144 (310)
T d1wdka4         109 AINGIALGGGLEMCLAAD--FRVMADSAKIGLPEVKLG  144 (310)
T ss_dssp             EECSCEETHHHHHHHTSS--EEEEETTCEEECGGGGGT
T ss_pred             eccccccccccccchhhh--hhhccccceecccccccC
Confidence            999999999999999999  499999998877654433

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.65  E-value=0.023  Score=46.32  Aligned_cols=93  Identities=11%  Similarity=0.081  Sum_probs=67.4

Q ss_pred             EEEECc-----ccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHH-------------------HHHHHHHhc
Q 026750           99 VIFIGQ-----NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-------------------AIYDTMQSL  154 (234)
Q Consensus        99 iIfL~g-----~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~agl-------------------aIyD~m~~~  154 (234)
                      +|.|+-     .++.++..++.+.|..++.++..+  .|.|.+-|+...+|.                   .+++.|..+
T Consensus        19 ~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (260)
T d1mj3a_          19 LIQLNRPKALNALCNGLIEELNQALETFEEDPAVG--AIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRI   96 (260)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCC--EEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGC
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcc--eEEEecccccccccchhhhhhccchhhhhHHHHHHHHHHhccC
Confidence            455653     367788888888888887654333  344455554433331                   134567778


Q ss_pred             CCCeEEEEccccccHHHHHHcCCCCCCEEeccCceEeeeCC
Q 026750          155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP  195 (234)
Q Consensus       155 ~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~PnAriMIHqP  195 (234)
                      +.||.+.+-|.|...|..|++++|  -|++.++++|.+-..
T Consensus        97 ~kPvIaav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~  135 (260)
T d1mj3a_          97 KKPVIAAVNGYALGGGCELAMMCD--IIYAGEKAQFGQPEI  135 (260)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             CCeEEEEEcCeEeHHHHHHHHHCC--EEEEcCCCEEECchh
Confidence            899999999999999999999999  499999999887443

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.07  Score=43.81  Aligned_cols=84  Identities=14%  Similarity=0.053  Sum_probs=60.6

Q ss_pred             ccChhhHHHHHHHHhcccccCCCCceEEEEeC------CCCCccH--------------------------HHHHHHHHH
Q 026750          105 NIDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP--------------------------TLAIYDTMQ  152 (234)
Q Consensus       105 ~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INS------PGG~v~a--------------------------glaIyD~m~  152 (234)
                      .++.+...++...|..++.++..+  .+.|.+      .|+|+..                          ...+++.|.
T Consensus        28 a~~~~~~~el~~al~~~~~d~~v~--~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  105 (266)
T d1pjha_          28 ALEGEDYIYLGELLELADRNRDVY--FTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFI  105 (266)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCC--EEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEeccccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            467788888888888887643322  333454      4444321                          123677888


Q ss_pred             hcCCCeEEEEccccccHHHHHHcCCCCCCEEeccC-ceEee
Q 026750          153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL-SRIAL  192 (234)
Q Consensus       153 ~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~Pn-AriMI  192 (234)
                      .++.||.+.+.|.|.+.|..|++++|  -|++.+. +.+.+
T Consensus       106 ~~~kP~IAav~G~a~GgG~~lal~~D--~~ia~~~~~~~~~  144 (266)
T d1pjha_         106 KHSKVLICCLNGPAIGLSAALVALCD--IVYSINDKVYLLY  144 (266)
T ss_dssp             HCCSEEEEEECSCEEHHHHHHHHHSS--EEEESSTTCEEEC
T ss_pred             hcchhhhhhhhcccccccccchhccc--hhhhhhccccccc
Confidence            99999999999999999999999999  4888654 56654

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.93  E-value=0.15  Score=42.46  Aligned_cols=101  Identities=14%  Similarity=0.057  Sum_probs=70.8

Q ss_pred             CCcE--EEECcc-----cChhhHHHHHHHHhcccccCCCCceEEEEeCC----CCCccH---------------------
Q 026750           96 RERV--IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGP----GGDVTP---------------------  143 (234)
Q Consensus        96 ~~Ri--IfL~g~-----Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSP----GG~v~a---------------------  143 (234)
                      .+.|  |.|+-+     ++.++..++.+.|..++.++..+-|.|.=+.+    ||....                     
T Consensus        27 ~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~  106 (297)
T d1q52a_          27 DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTA  106 (297)
T ss_dssp             SSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC------------------
T ss_pred             cCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhccccccccccccc
Confidence            4455  566543     77888899999888887655454444443433    343211                     


Q ss_pred             ------------HHHHHHHHHhcCCCeEEEEccccccHHHHHHcCCCCCCEEeccC-ceEeeeCCCCc
Q 026750          144 ------------TLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL-SRIALDSPAGA  198 (234)
Q Consensus       144 ------------glaIyD~m~~~~~~V~Tv~~G~AaS~aslIlaaG~kgkR~a~Pn-AriMIHqP~~~  198 (234)
                                  ...+++.|..++.||.+.+.|.|...|..|++++|-  |++.+. ++|-+.....|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~--~ia~~~~~~f~~pe~~~G  172 (297)
T d1q52a_         107 DTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDL--TLASREYARFKQTDADVG  172 (297)
T ss_dssp             -----------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSE--EEEETTTCEEECCGGGGT
T ss_pred             chhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhc--cccccccccceeeeeccc
Confidence                        124677788899999999999999999999999994  888775 46766655444

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.29  E-value=0.21  Score=44.68  Aligned_cols=102  Identities=13%  Similarity=0.033  Sum_probs=72.7

Q ss_pred             CCcE-EEECcccChhhHHHHHHHHhcccccCCCCceEEEEeCCC----------CCccHHHHHHHHHHhcCCCeEEEEcc
Q 026750           96 RERV-IFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus        96 ~~Ri-IfL~g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPG----------G~v~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      .+++ --.+|.+.++.+......+..+... ..-||.++.|.||          |-+..|-.|.+.+..++.|+.|++.+
T Consensus        99 ~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~-~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~~vP~i~vI~~  177 (404)
T d1uyra2          99 AETLIQEPGQVWHPNSAFKTAQAINDFNNG-EQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPP  177 (404)
T ss_dssp             CCEEEEECTTCBCHHHHHHHHHHHHHHHTT-SCCCEEECCCCCCBCC------CTHHHHHHHHHHHHHTCCSCEEEEECT
T ss_pred             hhhhhhccCCccCchHHHHHHHHHHHhhhc-cccceEEeecCCcccCcHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence            4444 4478899998877666666545321 1358999999999          56788999999999999999999964


Q ss_pred             cccc-HHHHHHcCCCCC----CEEeccCceEeeeCCCCc
Q 026750          165 FAYH-LAGFLLAGGEKG----NRSAMPLSRIALDSPAGA  198 (234)
Q Consensus       165 ~AaS-~aslIlaaG~kg----kR~a~PnAriMIHqP~~~  198 (234)
                      .+.+ .|+++.+++...    ..|+-|+|++-+=.|.+.
T Consensus       178 ~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGa  216 (404)
T d1uyra2         178 TGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGM  216 (404)
T ss_dssp             TCEEEHHHHHTTCGGGGTTTEEEEEETTCEEESSCHHHH
T ss_pred             CcccchhhhhcccCccCCccceEEECCccccccCChhhh
Confidence            4322 355555544321    136789999988888765

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=89.36  E-value=0.6  Score=37.82  Aligned_cols=83  Identities=10%  Similarity=0.049  Sum_probs=59.2

Q ss_pred             cChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCc---------------------cHHHHHHHHHHhcCCCeEEEEcc
Q 026750          106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV---------------------TPTLAIYDTMQSLKSPVGTHCVG  164 (234)
Q Consensus       106 Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v---------------------~aglaIyD~m~~~~~~V~Tv~~G  164 (234)
                      ++.++..++...+..++.++..  -.+.|.+.|...                     .....++..|..++.||.+.+-|
T Consensus        37 l~~~~~~el~~al~~~~~d~~v--~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g  114 (249)
T d1szoa_          37 WTSTAHDELAYCFHDIACDREN--KVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG  114 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTC--CEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCc--ceEeeecccccccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeeecc
Confidence            5678888888888888764332  235556555332                     22345677888999999999988


Q ss_pred             ccccHHHHHHcCCCCCCEEeccCceEeee
Q 026750          165 FAYHLAGFLLAGGEKGNRSAMPLSRIALD  193 (234)
Q Consensus       165 ~AaS~aslIlaaG~kgkR~a~PnAriMIH  193 (234)
                      .|.. |..|++++|  -|++.+++++...
T Consensus       115 ~~~G-G~~l~l~~D--~ria~~~a~f~~~  140 (249)
T d1szoa_         115 PVTN-APEIPVMSD--IVLAAESATFQDG  140 (249)
T ss_dssp             CBCS-STHHHHTSS--EEEEETTCEEECT
T ss_pred             cccc-ccccccccc--cccccCCcEEEEe
Confidence            7766 556777788  4999999998643

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=85.43  E-value=0.8  Score=38.55  Aligned_cols=89  Identities=11%  Similarity=0.025  Sum_probs=60.6

Q ss_pred             cccChhhHHHHHHHHhcccccCCCCceEEEEeCCCCCccHHH-----------HHHHH--HHhcCCCeEEEEccccccHH
Q 026750          104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-----------AIYDT--MQSLKSPVGTHCVGFAYHLA  170 (234)
Q Consensus       104 g~Id~e~a~~iia~Ll~L~~~~~~k~I~L~INSPGG~v~agl-----------aIyD~--m~~~~~~V~Tv~~G~AaS~a  170 (234)
                      |-+++.....+...+. +..+. .-|+..+++|||+.+..+.           .+++.  |.....|+.+++.|-|.+.|
T Consensus       118 Gs~~~~~~~K~~r~~~-lA~~~-~lP~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gGg  195 (287)
T d1pixa2         118 GAWVPGQAECLLRASD-TAKTL-HVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGG  195 (287)
T ss_dssp             TEECTTHHHHHHHHHH-HHHHH-TCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHH
T ss_pred             ccchhhHHHHHHHHHH-hhhhc-CCCEEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEEEecCCccccc
Confidence            6667766666555443 33333 3588889999998764332           33433  33446799999999999999


Q ss_pred             HHHHcCCCCCCEEeccCceEeeeCCC
Q 026750          171 GFLLAGGEKGNRSAMPLSRIALDSPA  196 (234)
Q Consensus       171 slIlaaG~kgkR~a~PnAriMIHqP~  196 (234)
                      ++..++++.  -++.+++++.+--|.
T Consensus       196 Ay~~~~~~~--i~~~~~a~i~~~Gp~  219 (287)
T d1pixa2         196 GYHSISPTV--IIAHEKANMAVGGAG  219 (287)
T ss_dssp             HHHHHSSSE--EEEETTCEEESCCCT
T ss_pred             eecccccee--EEecCCeEEEEECHH
Confidence            997766652  566678988887664