Citrus Sinensis ID: 026751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Secondary Structure (PSIPRED)
cccccHHHHcccHHHHHHcccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEEEEEEEccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccHHHcccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEEEEEEccccccccccHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEccc
Coil and Loop (DISEMBL)
mskepkdcrETYSQIKRRRMLQFDTqvvdsslcsdempspflksnergesveevlpeasqwttefsagvsasscdgtdqslEGWIseclndpemnfstdeldfsgasdiqidisefsnsppayddanilqqhctktphnvvfrgrkslirtptklassvaypfafikpcgvhgditlkdinqrihspastlrqntedpsaypksafsgkpvvgktkirteggkgsITIMRTKG
Flexible Loop (DISEMBL)
mskepkdcretysqikrrrmlqfDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSpastlrqntedpsaypksafsgkpvvgktkirteggkgsitimrtkg
Low Complexity Region (SEG)
MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Disordered region (IsUnstruct)
********************************************************************************LEGWISECLN******************IQIDI*********YDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQ***************************************************
Disordered Region (DISOPRED)
*****************RRMLQF**************************************TTEFSAGVSASSCDGTDQSLEGWISE***********************************************************************VAYPFAFIKPCGVHGDITLKDINQR*************************KPVVGKTKIRTEGGKGSITIMRTK*
Disordered Region (DISEMBL)
***********YSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTT*************TDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS**************SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Disordered Region (DISPRO)
***************KR****QFD****************************EV*P*ASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFS********************************************************KLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS*******DP******AFSGKPVVGKTKIRTEGGKGSITIMRTKG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q6NLW5	300	Protein XRI1 OS=Arabidops	no	no	0.948	0.736	0.544	6e-60

>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2

 Score =  230 bits (587), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 158/224 (70%), Gaps = 3/224 (1%)

Query: 10  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct: 80  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query: 70  SASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANIL 129
           SASS +G D   E W ++CLND E     D+L+F G+ D+Q+DISE+ N PP  +   + 
Sbjct: 139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDLNF-GSPDVQVDISEYLNVPPETETREV- 196

Query: 130 QQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS 189
           Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +
Sbjct: 197 QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPA 256

Query: 190 TLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
             + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 257 KPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

Required for mitotic division of the generative cell nucleus and the development of mature tricellular pollen grains, and for male and female meiosis.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
255560125	293	conserved hypothetical protein [Ricinus	0.995	0.791	0.640	6e-84
224069822	280	predicted protein [Populus trichocarpa]	0.987	0.821	0.623	3e-75
449453276	304	PREDICTED: protein XRI1-like [Cucumis sa	0.991	0.759	0.582	9e-69
356559041	309	PREDICTED: protein XRI1-like [Glycine ma	0.991	0.747	0.564	6e-67
356527366	302	PREDICTED: protein XRI1-like [Glycine ma	0.974	0.751	0.559	1e-66
147771043	320	hypothetical protein VITISV_010925 [Viti	0.811	0.590	0.661	2e-66
363808040	298	uncharacterized protein LOC100791247 [Gl	0.982	0.768	0.578	2e-66
356506666	327	PREDICTED: LOW QUALITY PROTEIN: protein	0.974	0.694	0.572	3e-65
297792063	266	hypothetical protein ARALYDRAFT_494937 [	0.948	0.830	0.558	1e-59
79532088	266	protein XRI1 [Arabidopsis thaliana] gi|4	0.948	0.830	0.544	1e-58

>gi|255560125|ref|XP_002521080.1| conserved hypothetical protein [Ricinus communis] gi|223539649|gb|EEF41231.1| conserved hypothetical protein [Ricinus communis]

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 157/245 (64%), Positives = 189/245 (77%), Gaps = 13/245 (5%)

Query: 1   MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSN-----------ERGE 49
           M KEP++ RET SQ+KRRRMLQFDTQ  DS LC +E+ S FL+SN           ER +
Sbjct: 50  MHKEPEEHRETSSQLKRRRMLQFDTQAADSPLCHEEISSVFLQSNATVNVFVTYVQERED 109

Query: 50  SVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDI 109
           S+EEVLP+AS W   FSA VSASS +  D S EGW+++C ND EM  S ++++F GA D+
Sbjct: 110 SLEEVLPQASDWVPGFSADVSASSYEALDHSSEGWLADCFNDTEMGLSPNDMNFPGACDV 169

Query: 110 QIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPC 169
           QIDISEF N P   ++A+ +Q+  T+TP NV+F+G+KS IRTPTKLASSV YPFAFIKPC
Sbjct: 170 QIDISEFCNGPLG-NEAHAVQKRITRTPRNVIFKGKKSFIRTPTKLASSVVYPFAFIKPC 228

Query: 170 GVHGDITLKDINQRIHS-PASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITI 228
           G HGD+TLKDINQ+I + P S L+QN EDP+AYP SAFSGKPVVGKTKIRTEGGKGSITI
Sbjct: 229 GFHGDVTLKDINQKIRTPPPSKLKQNEEDPAAYPTSAFSGKPVVGKTKIRTEGGKGSITI 288

Query: 229 MRTKG 233
           MRTKG
Sbjct: 289 MRTKG 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069822|ref|XP_002303048.1| predicted protein [Populus trichocarpa] gi|222844774|gb|EEE82321.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/234 (62%), Positives = 181/234 (77%), Gaps = 4/234 (1%)

Query: 1   MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQ 60
           M+KEP++ RET  Q KRRR LQFDT + DS  C +++ S FLKSNE  ES+EEV P+ASQ
Sbjct: 50  MNKEPEERRETCFQFKRRR-LQFDTHLADSPFCDEDLTSVFLKSNETEESLEEVFPQASQ 108

Query: 61  WTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSP 120
           W + +   +SAS  +G D S + WI++C ND  M+FS ++++F GASDIQIDIS+F N P
Sbjct: 109 WDSGYQ-DMSASCYNGLDPSSDPWIADCFNDSGMHFSPNDMNFPGASDIQIDISDFCNDP 167

Query: 121 PAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDI 180
           P ++ A+ +Q+   +TP NVVF+G KS I+TPTKLA+SVAYPFAFIKPCGVHGD+TL +I
Sbjct: 168 PEFE-ASTVQKCVPRTPRNVVFKGTKSFIQTPTKLATSVAYPFAFIKPCGVHGDVTLNEI 226

Query: 181 NQRIHS-PASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
           NQRI + P S  +Q  EDP  YP SAFSGKPVVGKTKIRTEGGKGSITIMRTKG
Sbjct: 227 NQRIRTPPPSKSKQKDEDPVVYPMSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453276|ref|XP_004144384.1| PREDICTED: protein XRI1-like [Cucumis sativus] gi|449529551|ref|XP_004171763.1| PREDICTED: protein XRI1-like [Cucumis sativus]

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 138/237 (58%), Positives = 174/237 (73%), Gaps = 6/237 (2%)

Query: 2   SKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQW 61
           +K+ ++ RET+SQ KRRRMLQF  Q +++S+C +++ S FLKS+ +  S    L E S  
Sbjct: 69  NKKSEESRETHSQAKRRRMLQFTAQDLETSICREDLSSRFLKSHNKVVSSPAALAEVSYG 128

Query: 62  TTEFSA---GVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSN 118
             E S     V  S  +  D S EGWI+ECLND +M+ S ++L F+G SDIQID+SEF +
Sbjct: 129 IPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDLSFAGTSDIQIDVSEFCD 188

Query: 119 SPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLK 178
             P +  +N++Q H T+ P N++F+GRKS IRTPTKLASSVAYPFAFIKPCG HGD+TLK
Sbjct: 189 GAPEFK-SNVVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAYPFAFIKPCGFHGDVTLK 247

Query: 179 DINQRIHS-PASTLRQNTEDPS-AYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
           DINQRI + P S L+   EDPS +YP SAFSGKPVVGKTKI TEGGKGSITIMRT+G
Sbjct: 248 DINQRIRTPPPSKLKHQPEDPSESYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTRG 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559041|ref|XP_003547810.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 135/239 (56%), Positives = 172/239 (71%), Gaps = 8/239 (3%)

Query: 1   MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQ 60
           M KE ++CRETYSQ KRRRMLQF++Q  D SL ++ M   +LK N + + V+E+ PE SQ
Sbjct: 73  MQKELEECRETYSQAKRRRMLQFNSQESDQSLSNEGMSLSYLK-NGKEDPVKEIFPEVSQ 131

Query: 61  WTT---EFSAGVSASSCDGTD-QSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEF 116
           W +   +F+ G +AS+ D  D +S E W+++  ND EM+ S +EL FS A D+QID +E 
Sbjct: 132 WVSGASDFTLG-NASASDYVDLESTETWLADYFNDAEMDISPEELKFSVADDVQIDGTEV 190

Query: 117 SNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDIT 176
           S   P+ +   + Q H  +T  N++F+GRKS I  PTKLASSVAYPFAFIKP G HGD+T
Sbjct: 191 SAIKPSREQNVVQQTHIPRTTRNIIFKGRKSFIHMPTKLASSVAYPFAFIKPSGAHGDVT 250

Query: 177 LKDINQRIHS--PASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
           LK+INQ I +  P  + + N +DPSAYPKSAFSGKPVVGKTKIRTEGGKGSITI RTKG
Sbjct: 251 LKEINQHIQTPPPLKSKQSNDDDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITITRTKG 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527366|ref|XP_003532282.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 131/234 (55%), Positives = 168/234 (71%), Gaps = 7/234 (2%)

Query: 3   KEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWT 62
           KE   C ++  QIKRRRMLQF++Q     L +++M S +LK  E  E  E+V PE SQW 
Sbjct: 73  KESDKCLKSSYQIKRRRMLQFNSQDGGHLLSNEQMSSAYLKGKE--EPKEDVFPEFSQWV 130

Query: 63  TEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPA 122
           +      SAS+ +   +S EGW+++C  D EM    D+L+FSGA ++Q+D+++  N PPA
Sbjct: 131 SGTPGSASASNYEDL-ESAEGWLADCFKDAEMQLCPDDLNFSGADEVQVDVADLGNFPPA 189

Query: 123 YDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQ 182
            +  N++Q   T+TP N++F+G KS I TPTKLA+SVAYPFAFIKPCG HGD+TLK+INQ
Sbjct: 190 CEQ-NVVQHGFTQTPKNIIFKGGKSFIETPTKLAASVAYPFAFIKPCGAHGDVTLKEINQ 248

Query: 183 RIHSPASTLR---QNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
           RI SP   L+   Q+ EDPSAYPKSAFSGKPVVGKT+I  EGGKGSITIMRTKG
Sbjct: 249 RILSPPPPLKSQQQSMEDPSAYPKSAFSGKPVVGKTRIHIEGGKGSITIMRTKG 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771043|emb|CAN65243.1| hypothetical protein VITISV_010925 [Vitis vinifera]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 152/192 (79%), Gaps = 3/192 (1%)

Query: 44  SNERGESVEEVLPEASQWTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDF 103
           S ER   VEE  P+ASQW + F   +S S  +G D+S EGW++EC ND EM+FS D+++ 
Sbjct: 130 SQERESFVEETQPDASQWVSGFPENMSVSGYEGLDKSSEGWLAECFNDAEMHFSPDDMNL 189

Query: 104 SGASDIQIDISEFSNSPPAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPF 163
           S  SD+QID++EF N P  Y+ AN +Q+  T+TP NV+F+GRKS +RTPTKLASSVAYPF
Sbjct: 190 SEISDVQIDVTEFYNIPTEYE-ANTVQERATRTPQNVIFKGRKSYMRTPTKLASSVAYPF 248

Query: 164 AFIKPCGVHGDITLKDINQRIHS-PASTLRQNTEDPS-AYPKSAFSGKPVVGKTKIRTEG 221
           AFIKPCGVHGD+TLKDINQRI + P S  RQ+ EDPS +YP SAFSGKPVVGKTKIRTEG
Sbjct: 249 AFIKPCGVHGDVTLKDINQRIRTPPPSKSRQSNEDPSVSYPTSAFSGKPVVGKTKIRTEG 308

Query: 222 GKGSITIMRTKG 233
           GKGSITIMRTKG
Sbjct: 309 GKGSITIMRTKG 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808040|ref|NP_001242722.1| uncharacterized protein LOC100791247 [Glycine max] gi|255647285|gb|ACU24109.1| unknown [Glycine max]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/235 (57%), Positives = 167/235 (71%), Gaps = 6/235 (2%)

Query: 1   MSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQ 60
           + KE   C ++  QIKRRRMLQF+TQ     L ++ M S +LK  E  ES E+V PE S 
Sbjct: 68  LQKESDKCLKSSDQIKRRRMLQFNTQDGGHFLSNEHMSSAYLKGKE--ESNEDVFPELSH 125

Query: 61  WTTEFSAGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSP 120
           W +  S   SAS+ +   +S EGW+++C  D EM    D+L+FSGA  +QID+++  N P
Sbjct: 126 WVSGASGSASASNYEDL-ESAEGWLADCFKDAEMQLCPDDLNFSGADAVQIDVADLCNFP 184

Query: 121 PAYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDI 180
           PA +  N+LQ H T+TP N+VF+G KS I TPTKLA+SVAYPF FIKPCG HGD+TLK+I
Sbjct: 185 PACE-QNVLQHHVTQTPKNIVFKGGKSFIETPTKLAASVAYPFTFIKPCGAHGDVTLKEI 243

Query: 181 NQRIHSPASTLR--QNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
           NQRI SP   L+  Q+ EDPSAYPKSAFSGKPVVGKTKI  EGGKGSITIM TKG
Sbjct: 244 NQRILSPPPPLKSQQSMEDPSAYPKSAFSGKPVVGKTKIHIEGGKGSITIMGTKG 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506666|ref|XP_003522097.1| PREDICTED: LOW QUALITY PROTEIN: protein XRI1-like [Glycine max]

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 170/234 (72%), Gaps = 7/234 (2%)

Query: 4   EPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTT 63
           EP++CRETYSQ KRRRMLQF++Q  D SL ++EM   +LK N + + V+E+ PE SQW +
Sbjct: 97  EPEECRETYSQXKRRRMLQFNSQDSDQSLSNEEMSLSYLK-NGKEDPVKEIFPEVSQWVS 155

Query: 64  EFSAGVSASSCDGTD-QSLEGWISECLNDPEMNFSTDELDFSGASDIQIDI-SEFSNSPP 121
             S   SAS  D  D +S E W+++  ND  M+FS +EL+FS A  +QID  +E S   P
Sbjct: 156 GASGNASAS--DYVDLESTETWLADYFNDAVMDFSPEELNFSVADGVQIDDGTEVSAITP 213

Query: 122 AYDDANILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDIN 181
           +++   + Q H  +T  N++F+GRKS I  PTKLASSVAYPFAFIKP G HGD+TLK+IN
Sbjct: 214 SHEQNVVQQTHVPRTTCNIIFKGRKSFIHMPTKLASSVAYPFAFIKPSGAHGDVTLKEIN 273

Query: 182 QRIHSPASTLRQNT--EDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
           QRI +P+ +    +  +DPSAYPKSAFSGKPVVGKTKIRTEGGKGSITI RTKG
Sbjct: 274 QRIQTPSPSKSNQSIDDDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITITRTKG 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792063|ref|XP_002863916.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata] gi|297309751|gb|EFH40175.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 157/224 (70%), Gaps = 3/224 (1%)

Query: 10  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R E+ +E+LPE SQ    FS   
Sbjct: 46  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDETFDELLPEGSQLIEGFSEDA 104

Query: 70  SASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANIL 129
           SASS +G D   E W +ECLND E     D+L F G+ D+Q+DISE+ N PP  +     
Sbjct: 105 SASSFEGLDLYAEEWYAECLNDAETPMLPDDLSF-GSPDVQVDISEYLNVPPETETREA- 162

Query: 130 QQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS 189
           Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +
Sbjct: 163 QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPA 222

Query: 190 TLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
             +Q+ E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 223 KPKQHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79532088|ref|NP_199683.2| protein XRI1 [Arabidopsis thaliana] gi|45773794|gb|AAS76701.1| At5g48720 [Arabidopsis thaliana] gi|58531328|gb|AAW78586.1| At5g48720 [Arabidopsis thaliana] gi|332008332|gb|AED95715.1| protein XRI1 [Arabidopsis thaliana]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 158/224 (70%), Gaps = 3/224 (1%)

Query: 10  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct: 46  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 104

Query: 70  SASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANIL 129
           SASS +G D   E W ++CLND E     D+L+F G+ D+Q+DISE+ N PP  +   + 
Sbjct: 105 SASSFEGLDLYAEEWYADCLNDAETPMLPDDLNF-GSPDVQVDISEYLNVPPETETREV- 162

Query: 130 QQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS 189
           Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +
Sbjct: 163 QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPA 222

Query: 190 TLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
             + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 223 KPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2156519	300	XRI1 "AT5G48720" [Arabidopsis	0.948	0.736	0.544	1.1e-57
TAIR|locus:2041110	213	AT2G01990 "AT2G01990" [Arabido	0.622	0.680	0.369	2.7e-13
TAIR|locus:2204538	226	AT1G14630 "AT1G14630" [Arabido	0.317	0.327	0.506	7.3e-09

TAIR|locus:2156519 XRI1 "AT5G48720" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 122/224 (54%), Positives = 158/224 (70%)

Query:    10 ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSAGV 69
             ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct:    80 ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query:    70 SASSCDGTDQSLEGWISECLNDPEMNFSTDELDFSGASDIQIDISEFSNSPPAYDDANIL 129
             SASS +G D   E W ++CLND E     D+L+F G+ D+Q+DISE+ N PP  +   + 
Sbjct:   139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDLNF-GSPDVQVDISEYLNVPPETETREV- 196

Query:   130 QQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSPAS 189
             Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P +
Sbjct:   197 QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPA 256

Query:   190 TLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
               + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct:   257 KPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010165 "response to X-ray" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2041110 AT2G01990 "AT2G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 64/173 (36%), Positives = 85/173 (49%)

Query:    78 DQSLEGW-ISE---CLND----PEMNFSTDELDFSGASDIQIDISEFSNSPP---AYDDA 126
             D S   W + E   CLN     P +N  T E   SG S  Q  IS    SP    +YD  
Sbjct:    52 DDSQNDWGLHESYSCLNSQFVTPHVN--TGER-ISGVSYCQETISNVYESPDTSVSYDKI 108

Query:   127 NILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRI-H 185
              + ++  T+   +      K LI   TKL     YPF  +KP G   D+TL DIN+RI  
Sbjct:   109 YVREKSPTEPSSSNCGNKNKRLI---TKLV----YPFGLVKPGGRENDVTLNDINERILM 161

Query:   186 SPASTLRQNTEDPSAYP-----KSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 233
             +P+  +R    D ++ P         SGK VV  TKI+T+G +G+ITI+RTKG
Sbjct:   162 APSRPIRHPVGDFASRPCVSGRGPGLSGKAVVALTKIQTQG-RGTITIIRTKG 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204538 AT1G14630 "AT1G14630" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 41/81 (50%), Positives = 49/81 (60%)

Query:   159 VAYPFAFIKPCGVHGDITLKDINQRIHSP-ASTLRQNTEDPSAYP-KSA----FSGKPVV 212
             V YPF  +KP G   DITL DIN+RI  P A  +R    D +  P  SA     SGK VV
Sbjct:   147 VVYPFGVVKPGGREEDITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAVV 206

Query:   213 GKTKIRTEGGKGSITIMRTKG 233
               TKI+T G +G+ITI+RTKG
Sbjct:   207 AFTKIQTLG-RGTITIIRTKG 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       233   0.00086  113 3  11 23  0.48    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  188 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.25u 0.19s 22.44t   Elapsed:  00:00:01
  Total cpu time:  22.25u 0.19s 22.44t   Elapsed:  00:00:01
  Start:  Sat May 11 04:32:04 2013   End:  Sat May 11 04:32:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011760001 SubName- Full=Chromosome undetermined scaffold_336, whole genome shotgun sequence; (313 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00