Citrus Sinensis ID: 026757

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFSFLARSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccEEEEcccccEEEEEcccccEEEcccccccEEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEEcccEEEEEcHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHccccccccccccccccccccccHHcccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccEEEcccccEEEEEccccEEEEcccccEEEEccccccccEEEEEEccccccHHHcccHHHHHHHHHHHHHccccccEEEEEEEEEcccccEEEEEEEEEEccccccEEEEEEEEccccEEEEHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maslqhspsssihqtsflnslpqlgvqkyggvlpAVCRRGISLIVKAEhasmassansldkcgrrqmIAVGVIapwvslvnqtppsfaaesnkgflsvtdkkdgysfvypfgwqeVIIEGQDKVFKDVIEplesvsvnliptgkqdirdfgppQEVAETLIKKflapptqktkIIAAsendvdgkayYAFEFTAQAPNYIRHALgvvtvgngmklITTREFEVHHFSFLARSL
Flexible Loop (DISEMBL)
maslqhspsssiHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSvnliptgkqdirdFGPPQEVAETLIKkflapptqktkiIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFSFLARSL
Low Complexity Region (SEG)
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFSFLARSL
Disordered region (IsUnstruct)
****************FLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHA********LDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFSFL****
Disordered Region (DISOPRED)
******************************************************************MIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQ*IRDFGPPQEVAETLIKKFLAPPTQKT*IIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFSFLARSL
Disordered Region (DISEMBL)
**************TSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFSFLARSL
Disordered Region (DISPRO)
************H**SFLNSLPQL*****GGVLPAVCRRGISLIVKAEH**********DKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFSFLARSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFSFLARSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
P82538	230	PsbP-like protein 1, chlo	yes	no	0.776	0.786	0.670	2e-68
O80634	238	PsbP-like protein 2, chlo	no	no	0.690	0.676	0.350	4e-20
O23403	287	PsbP domain-containing pr	no	no	0.579	0.470	0.284	1e-06
P82537	30	Thylakoid lumenal 17 kDa	N/A	no	0.128	1.0	0.766	1e-05
O49080	264	Oxygen-evolving enhancer	N/A	no	0.493	0.435	0.315	6e-05

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score =  259 bits (661), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 153/182 (84%), Gaps = 1/182 (0%)

Query: 31  GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
           GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAE
Sbjct: 18  GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76

Query: 91  SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
           S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77  SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136

Query: 151 GPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVG 210
           GPP+++AETLIKK LAPP QKT +I ASE+DVDGK YY FEFT QA NY RHALG +TV 
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVF 196

Query: 211 NG 212
           NG
Sbjct: 197 NG 198

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.
Arabidopsis thaliana (taxid: 3702)

>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 46  KAEHASMASSANSLDKCGRRQ-MIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDK 101
           KA+ +       S +   RRQ ++ VG      +LV  + P+    A E  K +    D+
Sbjct: 41  KADSSESTYQKGSGNNWKRRQALVGVG------TLVATSIPATLLLAEEIPKSYSPFVDR 94

Query: 102 KDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLI 161
           +DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV   L+
Sbjct: 95  EDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLV 154

Query: 162 KKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           K   A P Q   I    E   DGK YY FE+  + P Y   +   V VGN 
Sbjct: 155 KHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGNN 205

Required for accumulation of the chloroplast NAD(P)H dehydrogenase (NDH) complex. May be a subunit of this complex.

Arabidopsis thaliana (taxid: 3702)

>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 16/151 (10%)

Query: 54  SSANSLDKCGRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPF 111
           + A  +   GRR+ + +G++   + +V+Q   P +FA  S   F    D  DGYSF YP 
Sbjct: 69  TDAKQVCAVGRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQ 125

Query: 112 GWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD---IRDFGPPQEVAETLIKKFLAP- 167
            W +V   G D  F+D +   E++SV        +   + D G P+EV + +++++L   
Sbjct: 126 NWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEF 185

Query: 168 -------PTQKTKIIAASENDVDGKAYYAFE 191
                    Q   +  +S    DGK YY  E
Sbjct: 186 MSTRLGVKRQANILSTSSRVADDGKLYYQVE 216

Arabidopsis thaliana (taxid: 3702)

>sp|P82537|TL1X_SPIOL Thylakoid lumenal 17 kDa protein (Fragment) OS=Spinacia oleracea PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/30 (76%), Positives = 25/30 (83%)

Query: 89  AESNKGFLSVTDKKDGYSFVYPFGWQEVII 118
           AES KGFL V DKKDGY+F+YPFG QEV I
Sbjct: 1   AESKKGFLPVIDKKDGYTFLYPFGGQEVSI 30

Spinacia oleracea (taxid: 3562)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 43  LIVKAEHASMASSANSLDKCGRRQMI-------AVGV-IAPWVSLVNQTPPSFA-AESNK 93
           LI +A+ +S  +  NS     RR  +       AVG  IAP  +   +    F  A++N 
Sbjct: 36  LICRAQKSS-DTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNT 94

Query: 94  GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
            FL  T   DG++ + P  W   +EV   GQ   ++D  +   +VSV + PT K+ I D+
Sbjct: 95  DFLPYTG--DGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDY 152

Query: 151 GPPQEVAETL 160
           G P+E   T+
Sbjct: 153 GTPEEFLSTV 162

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
224109588	243	predicted protein [Populus trichocarpa]	0.896	0.860	0.699	6e-80
255582368	242	Thylakoid lumenal 25.6 kDa protein, chlo	0.896	0.863	0.679	1e-79
225449633	238	PREDICTED: putative oxygen evolving enha	0.879	0.861	0.683	4e-78
388493196	240	unknown [Lotus japonicus]	0.879	0.854	0.658	4e-72
449464194	236	PREDICTED: psbP-like protein 1, chloropl	0.854	0.843	0.625	1e-69
255626971	216	unknown [Glycine max]	0.871	0.939	0.641	4e-68
356568959	236	PREDICTED: uncharacterized protein LOC10	0.871	0.860	0.641	5e-68
15233245	230	PsbP-like protein 1 [Arabidopsis thalian	0.776	0.786	0.670	9e-67
297820294	229	photosystem II reaction center PsbP fami	0.751	0.764	0.691	3e-66
356499671	232	PREDICTED: psbP-like protein 1, chloropl	0.854	0.857	0.641	5e-66

>gi|224109588|ref|XP_002315246.1| predicted protein [Populus trichocarpa] gi|222864286|gb|EEF01417.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 149/213 (69%), Positives = 176/213 (82%), Gaps = 4/213 (1%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLG-VQKYGGVLPAVCRRGISLIVKAEHASMASSANSL 59
           MASLQ+SPS  ++ T    SLPQ+G  QK  G+L + CRRG+S +V+AE +S  S++ S 
Sbjct: 1   MASLQNSPS--VYHTLSPYSLPQVGGAQKNHGML-SFCRRGLSFLVRAEQSSPNSTSLSQ 57

Query: 60  DKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE 119
            + GRR++IAV VIAPWVS+VNQTPPSFAAES KGFL VTDKKDGYSF+YPFGWQEV+IE
Sbjct: 58  VRFGRRELIAVSVIAPWVSMVNQTPPSFAAESKKGFLLVTDKKDGYSFLYPFGWQEVVIE 117

Query: 120 GQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE 179
           GQDKVFKDVIEPLES+SVN+IPT KQDIRDFGPPQ+VAETLIKK LAPP+QKTK+I A E
Sbjct: 118 GQDKVFKDVIEPLESISVNVIPTVKQDIRDFGPPQQVAETLIKKVLAPPSQKTKLIEAKE 177

Query: 180 NDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           +  DGK YY FEF AQAPN+ RHAL  + +GNG
Sbjct: 178 HGADGKIYYTFEFVAQAPNFTRHALSAIAIGNG 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582368|ref|XP_002531973.1| Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223528370|gb|EEF30409.1| Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 172/212 (81%), Gaps = 3/212 (1%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           MASLQ+SPS     T   NS PQ+G+Q+Y    P  CR+GIS +V+AEH+    ++ S  
Sbjct: 1   MASLQNSPS--FCYTLSPNSFPQIGLQRYYDSFPC-CRKGISFVVRAEHSLPNLTSLSQV 57

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           + GRRQ++AV ++APWVSLVNQT PSFAAE+ KGFL VTDKKDGYSF+YPFGWQEV IEG
Sbjct: 58  RPGRRQLVAVSLVAPWVSLVNQTSPSFAAETKKGFLLVTDKKDGYSFLYPFGWQEVFIEG 117

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKD+IEPLE+VSV  +PT KQDIRDFGPPQ+VAE LIKK LAPP+QKTK+I ASE+
Sbjct: 118 QDKVFKDIIEPLENVSVTTVPTSKQDIRDFGPPQQVAEVLIKKVLAPPSQKTKLIEASEH 177

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           DVDGK YY FEFTA+APNY RHAL  +++GNG
Sbjct: 178 DVDGKTYYTFEFTARAPNYTRHALSTISIGNG 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449633|ref|XP_002284256.1| PREDICTED: putative oxygen evolving enhancer protein [Vitis vinifera] gi|296086290|emb|CBI31731.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 145/212 (68%), Positives = 170/212 (80%), Gaps = 7/212 (3%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           MASLQ+SP+  IH+T F NS  QLG+QK+G      CRRG+SL+V+AE  S   + N  D
Sbjct: 1   MASLQNSPA--IHRTLFPNSFSQLGLQKHGQF--RCCRRGVSLLVRAEQVS---TTNRED 53

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
             GRRQ++AVG I  WVSLVNQT  SFAAE+ KGFL+V DKKDGYSF+YPFGWQEV+I+G
Sbjct: 54  GPGRRQVLAVGAIGSWVSLVNQTSISFAAETKKGFLAVMDKKDGYSFLYPFGWQEVVIDG 113

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKDVIEPLESVSVN+IPT KQDIR+ G PQEVAE LIKK LAPP+QKTK++ A E+
Sbjct: 114 QDKVFKDVIEPLESVSVNMIPTVKQDIRELGSPQEVAEALIKKVLAPPSQKTKLVEAVEH 173

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           DVDGKAYY FEFT QA N+ RHAL  +T+GNG
Sbjct: 174 DVDGKAYYTFEFTVQAANFTRHALSAITIGNG 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493196|gb|AFK34664.1| unknown [Lotus japonicus]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 141/214 (65%), Positives = 164/214 (76%), Gaps = 9/214 (4%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSAN--S 58
           M SLQ+SP+  +H+T FLNS PQ    K+G    +  R GIS  VKA H   ASSA   S
Sbjct: 1   MVSLQNSPT--LHRTLFLNSFPQ----KHGASR-SPRREGISFTVKAAHEPSASSAGFPS 53

Query: 59  LDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVII 118
            D+ GRR++IA+G  AP V L +Q   SFAAE+ KGFL VTD+KDGY+F+YPFGWQEV I
Sbjct: 54  QDRPGRREVIAIGTTAPLVFLFSQNSSSFAAENKKGFLPVTDQKDGYTFIYPFGWQEVSI 113

Query: 119 EGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAAS 178
           EGQDKVFKDVIEPLESVSVN+IPTGKQ+I++FGPPQ+V ETLIK+ LAPP QKTKII A+
Sbjct: 114 EGQDKVFKDVIEPLESVSVNIIPTGKQNIKEFGPPQQVGETLIKRVLAPPNQKTKIIEAT 173

Query: 179 ENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           E DVDGK YY FEF AQAPNY RHAL  V+V NG
Sbjct: 174 EQDVDGKTYYRFEFIAQAPNYTRHALSTVSVSNG 207

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464194|ref|XP_004149814.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Cucumis sativus] gi|449519084|ref|XP_004166565.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Cucumis sativus]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 135/216 (62%), Positives = 160/216 (74%), Gaps = 17/216 (7%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMAS----SA 56
           MASLQ+S         F+NSLPQ    K  G     CR G+S +V+AE A  +S    + 
Sbjct: 1   MASLQNSL--------FINSLPQ----KLHGRF-VCCRAGVSFLVRAEQAHGSSINGHAC 47

Query: 57  NSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEV 116
           +S D+ GRRQ+++      W+SL +    SFAAE+ KGFLSV+DKKDGYSFVYPFGWQEV
Sbjct: 48  SSEDRLGRRQLLSGSAFITWISLADMNSMSFAAETKKGFLSVSDKKDGYSFVYPFGWQEV 107

Query: 117 IIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIA 176
           +I+GQDKVFKDVIEPLE+VSVNLIPT K+DIRDFGPPQ+VAETLIKK LAP  QKTK+I 
Sbjct: 108 VIDGQDKVFKDVIEPLENVSVNLIPTSKEDIRDFGPPQQVAETLIKKVLAPSNQKTKLIE 167

Query: 177 ASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           ASE+DV+GKAYY FEF AQAPNY RHAL  + V NG
Sbjct: 168 ASEHDVNGKAYYTFEFVAQAPNYTRHALSTIAVANG 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626971|gb|ACU13830.1| unknown [Glycine max]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 155/212 (73%), Gaps = 9/212 (4%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M SLQ+SP+  +H+T   NS PQ    +      +  R  IS IVKA     AS A S D
Sbjct: 1   MTSLQNSPT--LHRTMLHNSFPQKHATR------SSRRDAISFIVKAAQEPSASLA-SQD 51

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IA G  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 52  RQRRRQVIAFGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 111

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEVAETLIKK LAPP QKTKI+ A E 
Sbjct: 112 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKEQ 171

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           DV+GK YY FEF A+APNY RHAL  V++GNG
Sbjct: 172 DVEGKKYYQFEFIAKAPNYTRHALSTVSIGNG 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568959|ref|XP_003552675.1| PREDICTED: uncharacterized protein LOC100305918 [Glycine max]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 155/212 (73%), Gaps = 9/212 (4%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M SLQ+SP+  +H+T   NS PQ    +      +  R  IS IVKA     AS A S D
Sbjct: 1   MTSLQNSPT--LHRTMLHNSFPQKHATR------SSRRDAISFIVKAAQEPSASLA-SQD 51

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IA G  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 52  RQRRRQVIAFGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 111

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEVAETLIKK LAPP QKTKI+ A E 
Sbjct: 112 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKEQ 171

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           DV+GK YY FEF A+APNY RHAL  V++GNG
Sbjct: 172 DVEGKKYYQFEFIAKAPNYTRHALSTVSIGNG 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233245|ref|NP_191093.1| PsbP-like protein 1 [Arabidopsis thaliana] gi|9297075|sp|P82538.1|PPL1_ARATH RecName: Full=PsbP-like protein 1, chloroplastic; AltName: Full=OEC23-like protein 4; AltName: Full=PsbP-related thylakoid lumenal protein 2; Flags: Precursor gi|16930399|gb|AAL31885.1|AF419553_1 AT3g55330/T26I12_210 [Arabidopsis thaliana] gi|7019666|emb|CAB75767.1| putative protein [Arabidopsis thaliana] gi|20453231|gb|AAM19854.1| AT3g55330/T26I12_210 [Arabidopsis thaliana] gi|21593252|gb|AAM65201.1| unknown [Arabidopsis thaliana] gi|332645848|gb|AEE79369.1| PsbP-like protein 1 [Arabidopsis thaliana]

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 153/182 (84%), Gaps = 1/182 (0%)

Query: 31  GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
           GV+P+  ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAE
Sbjct: 18  GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76

Query: 91  SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
           S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77  SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136

Query: 151 GPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVG 210
           GPP+++AETLIKK LAPP QKT +I ASE+DVDGK YY FEFT QA NY RHALG +TV 
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVF 196

Query: 211 NG 212
           NG
Sbjct: 197 NG 198

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820294|ref|XP_002878030.1| photosystem II reaction center PsbP family protein [Arabidopsis lyrata subsp. lyrata] gi|297323868|gb|EFH54289.1| photosystem II reaction center PsbP family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/175 (69%), Positives = 148/175 (84%)

Query: 38  RRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLS 97
           ++G+S +VKAEH S +SS++  DKC RR ++  GV+APW+SL+++ P SFAAES KGFL+
Sbjct: 23  KKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLA 82

Query: 98  VTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVA 157
           V+D KD YSF+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNLIPT KQ I++FGPP+++A
Sbjct: 83  VSDNKDAYSFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLIPTSKQTIKEFGPPKQIA 142

Query: 158 ETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           ETLIKK LAPP QKT +I ASE+DVDGK YY FEFT QA NY RHALG +TV NG
Sbjct: 143 ETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNG 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499671|ref|XP_003518660.1| PREDICTED: psbP-like protein 1, chloroplastic-like [Glycine max]

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 155/212 (73%), Gaps = 13/212 (6%)

Query: 1   MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
           M+ LQ+SP+  +H +SF    PQ  V +      +  R  IS IVKA     AS   S D
Sbjct: 1   MSLLQNSPT--LHNSSF----PQKHVTR------SSRRDAISFIVKAVQEPSAS-LTSQD 47

Query: 61  KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
           +  RRQ+IAVG  AP V L NQ   SFAAE+ KGFL V DKKDGYSF+YPFGWQEV+IEG
Sbjct: 48  RQRRRQVIAVGTTAPLVFLFNQHSNSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEG 107

Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
           QDKVFKDVIEPLE+VSVN+IPTGKQDI +FG PQEVAETLIKK LAPP QKTKI+ A E 
Sbjct: 108 QDKVFKDVIEPLENVSVNVIPTGKQDITEFGSPQEVAETLIKKVLAPPNQKTKIVEAKEL 167

Query: 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
           DV+GK YY FEF AQAPNY RHAL  V++GNG
Sbjct: 168 DVEGKKYYQFEFIAQAPNYTRHALSTVSIGNG 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.849	0.860	0.622	7.4e-66
TAIR|locus:2039727	238	PnsL1 "Photosynthetic NDH subc	0.690	0.676	0.360	3.5e-20
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.579	0.470	0.298	3.2e-07

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 132/212 (62%), Positives = 167/212 (78%)

Query:     1 MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
             MASL+ SPSS I       S+ ++GV      +P+  ++G+S +VKAEH S +SS++  D
Sbjct:     1 MASLKLSPSSPI-------SISKVGV------IPS-SKKGLSFLVKAEHHSSSSSSHLQD 46

Query:    61 KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
             KC RR ++  GV+APW+SL+++ P SFAAES KGFL+V+D KD Y+F+YPFGWQEV+IEG
Sbjct:    47 KCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEG 106

Query:   121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASEN 180
             QDKV+KDVIEPLESVSVNL+PT KQ I++FGPP+++AETLIKK LAPP QKT +I ASE+
Sbjct:   107 QDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASEH 166

Query:   181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG 212
             DVDGK YY FEFT QA NY RHALG +TV NG
Sbjct:   167 DVDGKTYYQFEFTVQARNYTRHALGTITVFNG 198

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2039727 PnsL1 "Photosynthetic NDH subcomplex L 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 61/169 (36%), Positives = 81/169 (47%)

Query:    46 KAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDKK 102
             KA+ +       S +   RRQ + VGV     +LV  + P+    A E  K +    D++
Sbjct:    41 KADSSESTYQKGSGNNWKRRQAL-VGV----GTLVATSIPATLLLAEEIPKSYSPFVDRE 95

Query:   103 DGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIK 162
             DGYS+ YP  W+E      D  FKD    L++V V  IPT K DI + GP +EV   L+K
Sbjct:    96 DGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVK 155

Query:   163 KFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGN 211
                A P Q   I    E   DGK YY FE+  + P Y   +   V VGN
Sbjct:   156 HKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGN 204

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 45/151 (29%), Positives = 74/151 (49%)

Query:    54 SSANSLDKCGRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPF 111
             + A  +   GRR+ + +G++   + +V+Q   P +FA  S   F    D  DGYSF YP 
Sbjct:    69 TDAKQVCAVGRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQ 125

Query:   112 GWQEVIIEGQDKVFKDVIEPLESVSVNLI-PTGKQ--DIRDFGPPQEVAETLIKKFLAP- 167
              W +V   G D  F+D +   E++SV    P+      + D G P+EV + +++++L   
Sbjct:   126 NWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEF 185

Query:   168 -PTQ-----KTKIIAASENDVD-GKAYYAFE 191
               T+     +  I++ S    D GK YY  E
Sbjct:   186 MSTRLGVKRQANILSTSSRVADDGKLYYQVE 216


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       233   0.00086  113 3  11 22  0.42    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  170 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.80u 0.12s 19.92t   Elapsed:  00:00:01
  Total cpu time:  19.80u 0.12s 19.92t   Elapsed:  00:00:01
  Start:  Sat May 11 04:41:24 2013   End:  Sat May 11 04:41:25 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82538	PPL1_ARATH	No assigned EC number	0.6703	0.7768	0.7869	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_X2323	hypothetical protein (243 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_V0051	hypothetical protein (130 aa)			•				•		0.674
	gw1.XIII.355.1	hypothetical protein (158 aa)			•	•			•		0.673
	eugene3.00160848	hypothetical protein (215 aa)			•	•					0.632
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•			•		0.619
	estExt_Genewise1_v1.C_LG_X6026	hypothetical protein (200 aa)			•	•					0.610
	estExt_Genewise1_v1.C_LG_II4195	SubName- Full=Putative uncharacterized protein; (140 aa)			•	•					0.609
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•	•			•		0.599
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•	•			•		0.588
	estExt_fgenesh4_pg.C_LG_VII0722	photosystem II stability/assembly factor (394 aa)			•	•			•		0.577
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.564

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
pfam01789	163	pfam01789, PsbP, PsbP	3e-48
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	1e-07
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	1e-06

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  155 bits (395), Expect = 3e-48
 Identities = 58/137 (42%), Positives = 83/137 (60%), Gaps = 6/137 (4%)

Query: 86  SFAAESNKGFLSVTDKKDGYSFVYPFGW-QEVIIEGQDKVFKDVIEPLESVSVNLIPTGK 144
           +  A++N GF +  D  DGY F+YP GW +EV+ +G D VF D+IE  E+VSV + P  K
Sbjct: 1   ACKAKTNAGFQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDK 60

Query: 145 Q-DIRDFGPPQEVAETLIKKFLAPP--TQKTKIIAASENDVDGKAYYAFEFTAQAPNYI- 200
           +  + D G P+EV E L++  LAP    ++ +++ ASE +VDGK YY  E+  +  +   
Sbjct: 61  KKSLEDLGSPEEVGERLLRGVLAPEGSGREAELLEASEREVDGKTYYDLEYLVRLADGGD 120

Query: 201 RHALGVVTVGNGMKLIT 217
           RH L  VTV  G KL T
Sbjct: 121 RHELATVTVDRG-KLYT 136

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 12/149 (8%)

Query: 54  SSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGW 113
           + A  +   GRR+ + +G++   + +V++     A  S   F    D  DGYSF YP  W
Sbjct: 69  TDAKQVCAVGRRKSMMMGLLMSGL-IVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNW 127

Query: 114 QEVIIEGQDKVFKDVIEPLESVSVNL-IPTGKQ--DIRDFGPPQEVAETLIKKFLAP--- 167
            +V   G D  F+D +   E++SV    P+  +   + D G P+EV + +++++L     
Sbjct: 128 IQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMS 187

Query: 168 ----PTQKTKIIAASENDV-DGKAYYAFE 191
                 ++  I++ S     DGK YY  E
Sbjct: 188 TRLGVKREANILSTSSRVADDGKLYYQVE 216

Length = 286

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 36/199 (18%)

Query: 46  KAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAA-----------ESNKG 94
           +       +         RR   A+ ++A   +   +  P+ AA           ++N G
Sbjct: 34  RPSQVVCRAQEEDNSAVSRR--AALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTG 91

Query: 95  FLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFG 151
           FL      DG+  + P  W   +E    GQ   F+D  +   ++SV + PT K+ I D+G
Sbjct: 92  FLPYNG--DGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYG 149

Query: 152 PPQEVAET---LIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---T 193
            P+E       L+ K            F A       ++ +S  +V GK YY       T
Sbjct: 150 SPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRT 209

Query: 194 AQAPNYIRHALGVVTVGNG 212
           A      +H L   TV +G
Sbjct: 210 ADGDEGGKHQLITATVSDG 228

Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.9
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	96.67
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	93.02
PRK11615	185	hypothetical protein; Provisional	87.8

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=1.8e-44  Score=318.79  Aligned_cols=167  Identities=27%  Similarity=0.449  Sum_probs=148.3

Q ss_pred             cCccchhHHHHHHH-HHHHhhhcCCCCCCccccccCCceeeeeCCCCeEEecCCCceEeeecCceeeeeccCCCCceEEE
Q 026757           59 LDKCGRRQMIAVGV-IAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSV  137 (233)
Q Consensus        59 ~~~~~RR~~L~~~~-~aa~~s~~~~~~~A~A~e~~~gf~~y~D~~dgYsf~yP~~W~e~~~~G~d~~f~d~~~~~enVsV  137 (233)
                      ...++||++|+.++ .+.+.+.....+.|||+  +.||+.|+|..|||+|+||.||+++++.|+|++|||+++.+|||+|
T Consensus        74 ~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~--~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVSV  151 (286)
T PLN00059         74 VCAVGRRKSMMMGLLMSGLIVSEANLPTAFAS--IPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSV  151 (286)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHhhcCchhhcC--CcccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceEE
Confidence            35678999988766 34555555555678886  4589999999999999999999999999999999999999999999


Q ss_pred             EEecCC---CCCccccCChHHHHHHHHHHhcCCC-------CCceeEEEeeEec-cCCeEEEEEEEEEeC----------
Q 026757          138 NLIPTG---KQDIRDFGPPQEVAETLIKKFLAPP-------TQKTKIIAASEND-VDGKAYYAFEFTAQA----------  196 (233)
Q Consensus       138 vv~P~~---~~si~dlGspeeva~~Ll~~~~~~~-------~~~a~ll~a~~r~-~dGk~YY~~Ey~v~~----------  196 (233)
                      +|+|++   +++|+|||+|+|||++|++++++++       +++++||+|++|+ .||++||+|||.++.          
T Consensus       152 ~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~  231 (286)
T PLN00059        152 EFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVM  231 (286)
T ss_pred             EEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCccccccccc
Confidence            999875   5999999999999999999999874       3799999999995 599999999999887          


Q ss_pred             -------CCCcceEEEEEEEeCCeEEEEEEEecceeee
Q 026757          197 -------PNYIRHALGVVTVGNGMKLITTREFEVHHFS  227 (233)
Q Consensus       197 -------~~~~RH~la~vtv~~gkLYtl~~q~~~~~f~  227 (233)
                             ++|.||+|++++|+|||||||++|+++.+|.
T Consensus       232 ~qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~  269 (286)
T PLN00059        232 PQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFL  269 (286)
T ss_pred             ccccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHH
Confidence                   3789999999999999999999999999984

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=2.4e-42  Score=305.56  Aligned_cols=166  Identities=25%  Similarity=0.405  Sum_probs=143.5

Q ss_pred             CccchhHHHHHHHH-HHHhhhcCCCCCCcccc--------ccCCceeeeeCCCCeEEecCCCce---EeeecCceeeeec
Q 026757           60 DKCGRRQMIAVGVI-APWVSLVNQTPPSFAAE--------SNKGFLSVTDKKDGYSFVYPFGWQ---EVIIEGQDKVFKD  127 (233)
Q Consensus        60 ~~~~RR~~L~~~~~-aa~~s~~~~~~~A~A~e--------~~~gf~~y~D~~dgYsf~yP~~W~---e~~~~G~d~~f~d  127 (233)
                      ....||.+|++++. +++.+.+.|+.+||+++        ...||.+|.  +|||+|+||.+|+   |..++|+|++|+|
T Consensus        48 ~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~D  125 (260)
T PLN00042         48 SAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFED  125 (260)
T ss_pred             ccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEeec
Confidence            44679988876553 34568889999999754        468999995  5999999999998   5557899999999


Q ss_pred             cCCCCceEEEEEecCCCCCccccCChHHHHHH----HHHHhcCCC---------C--CceeEEEeeEeccCCeEEEEEEE
Q 026757          128 VIEPLESVSVNLIPTGKQDIRDFGPPQEVAET----LIKKFLAPP---------T--QKTKIIAASENDVDGKAYYAFEF  192 (233)
Q Consensus       128 ~~~~~enVsVvv~P~~~~si~dlGspeeva~~----Ll~~~~~~~---------~--~~a~ll~a~~r~~dGk~YY~~Ey  192 (233)
                      +++.++||+|+|+|+++++|+|||+||||+++    |.++++.++         +  ..++||+++++++||++||+|||
T Consensus       126 ~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~  205 (260)
T PLN00042        126 NFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSV  205 (260)
T ss_pred             cccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEE
Confidence            99999999999999999999999999996554    557887754         1  25799999999999999999999


Q ss_pred             EEeCC---CCcceEEEEEEEeCCeEEEEEEEecceeee
Q 026757          193 TAQAP---NYIRHALGVVTVGNGMKLITTREFEVHHFS  227 (233)
Q Consensus       193 ~v~~~---~~~RH~la~vtv~~gkLYtl~~q~~~~~f~  227 (233)
                      .++.+   +++||+|+++||.|||||||++|++|++|-
T Consensus       206 ~~~~ad~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~  243 (260)
T PLN00042        206 LTRTADGDEGGKHQLITATVSDGKLYICKAQAGDKRWF  243 (260)
T ss_pred             EEecCCCCCCCceEEEEEEEECCEEEEEEecCchhhhh
Confidence            98865   489999999999999999999999999994

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=3.9e-38  Score=265.37  Aligned_cols=145  Identities=46%  Similarity=0.741  Sum_probs=129.5

Q ss_pred             CCCCccccccCCceeeeeCCCCeEEecCCCceEeeecCceeeeeccCCCCceEEEEEecCCCC-CccccCChHHHHHHHH
Q 026757           83 TPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQ-DIRDFGPPQEVAETLI  161 (233)
Q Consensus        83 ~~~A~A~e~~~gf~~y~D~~dgYsf~yP~~W~e~~~~G~d~~f~d~~~~~enVsVvv~P~~~~-si~dlGspeeva~~Ll  161 (233)
                      +..+.+++...||++|.|+.+||+|.||.+|+++++.|+|++|+|+.+..+||+|+|.|+.+. +|+|||+|++|+++|+
T Consensus        11 ~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~   90 (175)
T PF01789_consen   11 ANVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLL   90 (175)
T ss_dssp             -----STT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHH
T ss_pred             chhhhcccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHh
Confidence            334444567789999999999999999999999999999999999999999999999999875 9999999999999999


Q ss_pred             HHhcCCCC--CceeEEEeeEeccCCeEEEEEEEEEeCCC-CcceEEEEEEEeCCeEEEEEEEecceeee
Q 026757          162 KKFLAPPT--QKTKIIAASENDVDGKAYYAFEFTAQAPN-YIRHALGVVTVGNGMKLITTREFEVHHFS  227 (233)
Q Consensus       162 ~~~~~~~~--~~a~ll~a~~r~~dGk~YY~~Ey~v~~~~-~~RH~la~vtv~~gkLYtl~~q~~~~~f~  227 (233)
                      +..+++++  +.++||++++++.+|++||+|||.++.++ +.||+|++++|.|||||+|++|+++.||.
T Consensus        91 ~~~~~~~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~l~~~a~e~~w~  159 (175)
T PF01789_consen   91 NGELASPGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYTLTAQAPESRWD  159 (175)
T ss_dssp             HHCCCHCTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEHHHHH
T ss_pred             hhhcccccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEEEEEEcCHHHHH
Confidence            99888776  78999999999999999999999999988 99999999999999999999999999985

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=7.8e-37  Score=270.10  Aligned_cols=168  Identities=17%  Similarity=0.290  Sum_probs=139.3

Q ss_pred             CccCccchhHHHHHHHHHHHhhhcCCCCCCcc-----------ccccCCceeeeeC-----------CCCeEEecCCCce
Q 026757           57 NSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFA-----------AESNKGFLSVTDK-----------KDGYSFVYPFGWQ  114 (233)
Q Consensus        57 ~~~~~~~RR~~L~~~~~aa~~s~~~~~~~A~A-----------~e~~~gf~~y~D~-----------~dgYsf~yP~~W~  114 (233)
                      .......||++|.++++++++++..+. .+.|           .....||..|...           ..||+|+||.+|+
T Consensus        38 ~~~~~~~rr~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~  116 (263)
T PLN00067         38 RAAVVIHRRELLLGLALAPLILIAPEP-PAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWK  116 (263)
T ss_pred             cccchhHHHHHHhhhhhhhhhhccCCc-hhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCc
Confidence            445567899998766655544443322 2223           1123588888532           3489999999999


Q ss_pred             Eeeec----C-----------ceeeeeccCCCCceEEEEEecC------CCCCccccCChHHHHHHHHHHhcCCCCCcee
Q 026757          115 EVIIE----G-----------QDKVFKDVIEPLESVSVNLIPT------GKQDIRDFGPPQEVAETLIKKFLAPPTQKTK  173 (233)
Q Consensus       115 e~~~~----G-----------~d~~f~d~~~~~enVsVvv~P~------~~~si~dlGspeeva~~Ll~~~~~~~~~~a~  173 (233)
                      +++++    |           +|++|+|.+  ++||+|+|+|+      +.++|+|||+|++|+++|.+.++++++++++
T Consensus       117 ~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~e  194 (263)
T PLN00067        117 QTRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDE  194 (263)
T ss_pred             CccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcc
Confidence            98885    4           799999955  68999999997      3489999999999999999999988778899


Q ss_pred             EEEeeEeccCCeEEEEEEEEEeCCCCcceEEEEEEEeCCeEEEEEEEecceeee
Q 026757          174 IIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFS  227 (233)
Q Consensus       174 ll~a~~r~~dGk~YY~~Ey~v~~~~~~RH~la~vtv~~gkLYtl~~q~~~~~f~  227 (233)
                      ||++++++.||++||+|||.++..+++||+|+++||++||||||++|++|+||.
T Consensus       195 LLeAs~re~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~  248 (263)
T PLN00067        195 LLETSVEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQ  248 (263)
T ss_pred             eEEeeeEeeCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999995

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=1.5e-34  Score=257.20  Aligned_cols=164  Identities=20%  Similarity=0.370  Sum_probs=132.7

Q ss_pred             CccCccchhHHHHHHHHHHHhhhc-CCC--CCC-cc----------ccccCCceeeeeCC-------------CCeEEec
Q 026757           57 NSLDKCGRRQMIAVGVIAPWVSLV-NQT--PPS-FA----------AESNKGFLSVTDKK-------------DGYSFVY  109 (233)
Q Consensus        57 ~~~~~~~RR~~L~~~~~aa~~s~~-~~~--~~A-~A----------~e~~~gf~~y~D~~-------------dgYsf~y  109 (233)
                      .....+.||.+|+.++++++.+.+ .|+  .++ ++          +.+..||++|..+.             .+|+|+|
T Consensus        40 ~~~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~y  119 (262)
T PLN00066         40 DVATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKV  119 (262)
T ss_pred             hhcchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEEC
Confidence            334566899999876654332222 222  111 11          23447999998764             4799999


Q ss_pred             CCCceEeeec-----CceeeeeccCCCCceEEEEEecC--------CCCCccccCChHHHHHHHHHHhcCCCCCceeEEE
Q 026757          110 PFGWQEVIIE-----GQDKVFKDVIEPLESVSVNLIPT--------GKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIA  176 (233)
Q Consensus       110 P~~W~e~~~~-----G~d~~f~d~~~~~enVsVvv~P~--------~~~si~dlGspeeva~~Ll~~~~~~~~~~a~ll~  176 (233)
                      |.+|+|+.++     |+++.+++..+..+||+|+|.|+        ++++|+|||+|++|++.|+++++.++.++++|++
T Consensus       120 P~GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eLl~  199 (262)
T PLN00066        120 PQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLS  199 (262)
T ss_pred             CCCCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccceeE
Confidence            9999999886     55555666667889999999997        4689999999999999999998888878899999


Q ss_pred             eeEeccCCeEEEEEEEEEeCCCCcceEEEEEEEeCCeEEEEEEEecceeee
Q 026757          177 ASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFS  227 (233)
Q Consensus       177 a~~r~~dGk~YY~~Ey~v~~~~~~RH~la~vtv~~gkLYtl~~q~~~~~f~  227 (233)
                      +++++.||++||+|||       .||+|+++||.+||||||++|+++.||.
T Consensus       200 a~~re~dGktYY~~E~-------~rH~LasaTV~~GrLYt~~asape~rW~  243 (262)
T PLN00066        200 MEVAEHSGRTYYQFEL-------PPHTLVTATAAGNRVYIFSVTANGLQWK  243 (262)
T ss_pred             eeeeecCCcEEEEEEE-------eCceEEEEEEECCEEEEEEeecchHhhH
Confidence            9999999999999999       3899999999999999999999999995

>PLN03152 hypothetical protein; Provisional

Probab=99.90  E-value=2.4e-23  Score=180.49  Aligned_cols=156  Identities=24%  Similarity=0.367  Sum_probs=112.4

Q ss_pred             CccchhHHHHHHHHHHHhh--hcCCCCCCcccc------------ccCCceeeeeCCCCeEEecCCCceEeee----c--
Q 026757           60 DKCGRRQMIAVGVIAPWVS--LVNQTPPSFAAE------------SNKGFLSVTDKKDGYSFVYPFGWQEVII----E--  119 (233)
Q Consensus        60 ~~~~RR~~L~~~~~aa~~s--~~~~~~~A~A~e------------~~~gf~~y~D~~dgYsf~yP~~W~e~~~----~--  119 (233)
                      +...||+++.-.+.+.+++  ...|...++|+.            +++.+-.|  -++||++.||.+++.+.-    +  
T Consensus        29 ~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~--~g~gf~~~~pp~f~di~e~~~~~~g  106 (241)
T PLN03152         29 CGASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQF--YGDGFSIRVPPSFEDIMEPEDYNAG  106 (241)
T ss_pred             ccccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhh--hCCceEEeCCCChhhhcChhhcccc
Confidence            3445888875443222222  223445555532            22445555  489999999999985421    1  


Q ss_pred             ----C-------ceeeeeccCCCCceEEEEEecCC--------CCCccccCChHHHHHHHHHHhcCCCCC---ceeEEEe
Q 026757          120 ----G-------QDKVFKDVIEPLESVSVNLIPTG--------KQDIRDFGPPQEVAETLIKKFLAPPTQ---KTKIIAA  177 (233)
Q Consensus       120 ----G-------~d~~f~d~~~~~enVsVvv~P~~--------~~si~dlGspeeva~~Ll~~~~~~~~~---~a~ll~a  177 (233)
                          |       -..||..+ +.+|||||+|.|++        .++|+|||+|+||++.++     +++.   .++.++.
T Consensus       107 ~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~v-----P~g~~~~saR~iel  180 (241)
T PLN03152        107 LSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFV-----PGGATLYSARTIKV  180 (241)
T ss_pred             cceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhC-----CCcccccccceeee
Confidence                2       12445443 45899999999974        589999999999996665     4442   5666766


Q ss_pred             eEeccCCeEEEEEEEEEeCCCCcceEEEEEEEeCCeEEEEEEEecceeeeE
Q 026757          178 SENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHFSF  228 (233)
Q Consensus       178 ~~r~~dGk~YY~~Ey~v~~~~~~RH~la~vtv~~gkLYtl~~q~~~~~f~~  228 (233)
                      + ++.||++||+|||.++    .||+|++|+|.+||||||++++++.+|.-
T Consensus       181 ~-~E~dGKtYY~lEy~v~----~RH~LaTVaVsrGKLYTl~aSt~EkRW~K  226 (241)
T PLN03152        181 K-EEEGIRTYYFYEFGRD----EQHVALVATVNSGKAYIAGATAPESKWDD  226 (241)
T ss_pred             e-eecCCceeEEEEEEeC----CcEEEEEEEEcCCeEEEEecCCchhchHH
Confidence            4 4899999999999986    89999999999999999999999999963

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=96.67  E-value=0.15  Score=40.50  Aligned_cols=111  Identities=13%  Similarity=0.096  Sum_probs=70.8

Q ss_pred             EEecCCCceEeeecCceeeeeccCCCCceEEEEEecCCCCCccccCChHHHHHHHHHHhcCCCCCceeEEEeeEeccCCe
Q 026757          106 SFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGK  185 (233)
Q Consensus       106 sf~yP~~W~e~~~~G~d~~f~d~~~~~enVsVvv~P~~~~si~dlGspeeva~~Ll~~~~~~~~~~a~ll~a~~r~~dGk  185 (233)
                      +|..|.+|+...+  +-.++.|.....-|+.|+-.+..     +=.+.++..++.+++.- .....-++++......+|.
T Consensus         3 ~~~lP~~~~D~t~--nv~~~~~~~~~~~slvIsR~~l~-----~g~tl~~~~~~q~~~l~-~~l~~~~~~~~~~~~l~~~   74 (130)
T PF08786_consen    3 SLTLPDGWQDRTM--NVLVLPDSGGSGPSLVISRDPLP-----DGETLEDYLQRQLAQLR-KQLPGFQLVERQPITLGGR   74 (130)
T ss_dssp             EEEEETTSEE--B--EEEEE--BTTB-EEEEEEEE--------TTS-HHHHHHHHHHHHH-CCSTT-EEEEEEEEEETTE
T ss_pred             eEeCCCcceeceE--EEEEccCCCCCcceEEEEeccCC-----CCCCHHHHHHHHHHHHH-hhCCCcEEEeeEEEEeCCC
Confidence            5788999997543  11223333222233444433332     22356667777665443 2224567888777789999


Q ss_pred             EEEEEEEEEeCCCCcceEEEEEEEeC-CeEEEEEEEecce
Q 026757          186 AYYAFEFTAQAPNYIRHALGVVTVGN-GMKLITTREFEVH  224 (233)
Q Consensus       186 ~YY~~Ey~v~~~~~~RH~la~vtv~~-gkLYtl~~q~~~~  224 (233)
                      +-+.+||.-...+..-|+..++..-+ +++|+++.+++..
T Consensus        75 ~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~  114 (130)
T PF08786_consen   75 PARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGP  114 (130)
T ss_dssp             EEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECC
T ss_pred             CeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCC
Confidence            99999999888888899999999988 9999999998653

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=93.02  E-value=4.5  Score=33.68  Aligned_cols=44  Identities=16%  Similarity=0.280  Sum_probs=26.1

Q ss_pred             eeeeeCCCCeEEecCCCceEeeecCce-eeeeccCCCCceEEEEEe
Q 026757           96 LSVTDKKDGYSFVYPFGWQEVIIEGQD-KVFKDVIEPLESVSVNLI  140 (233)
Q Consensus        96 ~~y~D~~dgYsf~yP~~W~e~~~~G~d-~~f~d~~~~~enVsVvv~  140 (233)
                      .-|..++.=|+..||.+|.|.+ .|.+ -.|.||..=++|..+..-
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfE-D~E~sflFYnp~~WTGNfRISay   46 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFE-DGEGSFLFYNPDQWTGNFRISAY   46 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE----TTEEEEE-SSS---EEEEEEE
T ss_pred             CcccCCCceEEEecCCCcchhc-cCCcceEEEChHHhcCceEEEEE
Confidence            4577788889999999999987 5654 458999888999887753

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

>PRK11615 hypothetical protein; Provisional

Probab=87.80  E-value=17  Score=31.42  Aligned_cols=114  Identities=12%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             CCCCeEEecCCCceEeeec-C----ceeeeeccCCCCceEEEEEecCCCCCccccCChHHHHHHHHHH-hcCCCCCceeE
Q 026757          101 KKDGYSFVYPFGWQEVIIE-G----QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKK-FLAPPTQKTKI  174 (233)
Q Consensus       101 ~~dgYsf~yP~~W~e~~~~-G----~d~~f~d~~~~~enVsVvv~P~~~~si~dlGspeeva~~Ll~~-~~~~~~~~a~l  174 (233)
                      -..+.+|.+|.++.+.... |    .--+|-|..  ...+-|+|.+ +. +=++   .+..+.+|..+ .-+-|  .-.+
T Consensus        46 LdGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~t--g~kavIVi~g-D~-~~~~---Ld~la~rl~~qQr~rdp--~lqv  116 (185)
T PRK11615         46 LDGKLSFTLPADMSDQSGKLGTQANNMHVYADAT--GQKAVIVILG-DD-TNED---LAVLAKRLEDQQRSRDP--QLQV  116 (185)
T ss_pred             eccEEEEEcCCccccccccccccccceEEEEcCC--CCEEEEEEeC-CC-Chhh---HHHHHHHHHHHHHhhCc--Ccee
Confidence            3568999999999855332 2    335677743  3444333322 21 1111   24455566532 22222  2345


Q ss_pred             EEeeEeccCCeEEEEEEEEEeCCCCcceEEEEEEEeCCeEEEEEEEecc
Q 026757          175 IAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEV  223 (233)
Q Consensus       175 l~a~~r~~dGk~YY~~Ey~v~~~~~~RH~la~vtv~~gkLYtl~~q~~~  223 (233)
                      +.-+.-+++|+++++++-.+...+..--.-++++..++||-||.+..+-
T Consensus       117 vsnK~i~i~G~~~qQLDS~~t~~Gqk~~SSvvL~~v~~rl~tlQitlpA  165 (185)
T PRK11615        117 VTNKAIELKGHKLQQLDSIISAKGQTAYSSVVLGKVDNQLLTMQITLPA  165 (185)
T ss_pred             ecceeEEECCeeeEEeeeeeecCCceEEEEEEEEeeCCeEEEEEEecCC
Confidence            5555557899999999998877665555556667779999999887664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		2e-14
2lnj_A	170	Solution Structure Of Cyanobacterial Psbp (Cyanop)		5e-12

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQ-DKVFKDVIEPLESVS--VNLIPTGK 144
            + +  G  +  D  DGY F+YP GW +V +E   D VF D+IE  E+VS  VN + + K
Sbjct: 1   GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTK 60
Query: 145 QDIRDFGPPQEVAETLIKKFLAPPT--QKTKIIAASENDVDGKAYYAFEFTAQAPN---- 198
             + + G P+EV + L++  +AP    + + +IAA+    D K YY  E+    P     
Sbjct: 61  S-LEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNT 119
Query: 199 -YIRHALGVVTVGNG 212
              RH L  + V  G
Sbjct: 120 AQQRHNLSSIAVSRG 134

>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From Synechocystis Sp. Pcc 6803 Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 99  TDKKDGYSFVYPFGWQEVIIEGQ----DKVFKDVIEPLESVSVNL--IPTGKQDIRDFGP 152
           +D KDGY F+YP GW  V ++G     D VF+D+IE  E++SV +  IP+ K  + D G 
Sbjct: 18  SDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LTDLGT 76
Query: 153 PQEVAETLIKKF--LAPPTQKTKIIAASENDVDGKAYYAFEFTAQ-APNYIRHALGVVTV 209
             +V    +K     +   ++ ++I A   D DG+ YY  E+      N  RH L  VT 
Sbjct: 77  ATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTT 136
Query: 210 GNGMKLIT 217
             G KLIT
Sbjct: 137 NRG-KLIT 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	3e-33
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	7e-31
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	6e-30
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	2e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score =  111 bits (277), Expect = 7e-31
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 10/139 (7%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIP-TGKQ 145
            + +  G  +  D  DGY F+YP GW +V +E   D VF D+IE  E+VSV +      +
Sbjct: 1   GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTK 60

Query: 146 DIRDFGPPQEVAETLIKKFLAPP--TQKTKIIAASENDVDGKAYYAFEFTAQAPNYI--- 200
            + + G P+EV + L++  +AP    + + +IAA+    D K YY  E+    P      
Sbjct: 61  SLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTA 120

Query: 201 --RHALGVVTVGNGMKLIT 217
             RH L  + V  G K+ T
Sbjct: 121 QQRHNLSSIAVSRG-KVYT 138

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score =  108 bits (271), Expect = 6e-30
 Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPT- 142
                      +D KDGY F+YP GW  V ++    G D VF+D+IE  E++SV +    
Sbjct: 7   GGVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIP 66

Query: 143 GKQDIRDFGPPQEVAETLIKKFLAPP--TQKTKIIAASENDVDGKAYYAFEFTAQ-APNY 199
             + + D G   +V    +K         ++ ++I A   D DG+ YY  E+      N 
Sbjct: 67  SDKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNV 126

Query: 200 IRHALGVVTVGNGMKLIT 217
            RH L  VT   G KLIT
Sbjct: 127 ERHDLASVTTNRG-KLIT 143

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score =  107 bits (268), Expect = 2e-29
 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 23/146 (15%)

Query: 88  AAESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGK 144
             +++  F +     DG+    P  W   +EV   GQ   F+D  +   +V V + PT K
Sbjct: 2   KPKTDTDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDK 59

Query: 145 QDIRDFGPPQE----VAETLIKKFLAPPTQK-----------TKIIAASENDVDGKAYYA 189
           + I DFG P++    V   L ++  +  T               ++  S  +V GK YY 
Sbjct: 60  KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYY 119

Query: 190 FEFTAQAPN---YIRHALGVVTVGNG 212
                +  +     +H L   TV +G
Sbjct: 120 LSILTRTADGNEGGKHQLVTATVNDG 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 31/121 (25%)

Query: 110 PFG--WQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDI-RDFGPPQ--EVAETLIKKF 164
            F   W  +         + V+E L+ +   + P                   +  +++ 
Sbjct: 181 DFKIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 165 LA-PPTQKTKIIAASENDV-DGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFE 222
           L   P +   ++     +V + KA+ AF  + +                   L+TTR  +
Sbjct: 238 LKSKPYENCLLVL---LNVQNAKAWNAFNLSCKI------------------LLTTRFKQ 276

Query: 223 V 223
           V
Sbjct: 277 V 277

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	96.48
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	93.77

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.6e-36  Score=256.07  Aligned_cols=137  Identities=23%  Similarity=0.396  Sum_probs=114.4

Q ss_pred             cccCCceeeeeCCCCeEEecCCCceEee---ecCceeeeeccCCCCceEEEEEecCCCCCccccCChHHHHH----HHHH
Q 026757           90 ESNKGFLSVTDKKDGYSFVYPFGWQEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAE----TLIK  162 (233)
Q Consensus        90 e~~~gf~~y~D~~dgYsf~yP~~W~e~~---~~G~d~~f~d~~~~~enVsVvv~P~~~~si~dlGspeeva~----~Ll~  162 (233)
                      +.+.||++|.  .+||+|+||.+|++++   ++|+|++|+|+++.++||+|+|+|+++++|+|||+|++|++    .|++
T Consensus         4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~   81 (177)
T 1v2b_A            4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGR   81 (177)
T ss_dssp             ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC--
T ss_pred             CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHH
Confidence            4568999997  9999999999999644   56999999999999999999999999999999999999654    4667


Q ss_pred             HhcCCC-----C------CceeEEEeeEeccCCeEEEEEEEEEeCCC---CcceEEEEEEEeCCeEEEEEEEecceeeeE
Q 026757          163 KFLAPP-----T------QKTKIIAASENDVDGKAYYAFEFTAQAPN---YIRHALGVVTVGNGMKLITTREFEVHHFSF  228 (233)
Q Consensus       163 ~~~~~~-----~------~~a~ll~a~~r~~dGk~YY~~Ey~v~~~~---~~RH~la~vtv~~gkLYtl~~q~~~~~f~~  228 (233)
                      +++++.     +      ++++||++++++.||++||+|||.++.++   +.||+|+++||+|||||+|++|+++.||.-
T Consensus        82 ~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k  161 (177)
T 1v2b_A           82 QAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFK  161 (177)
T ss_dssp             ----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCST
T ss_pred             HhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhhh
Confidence            767641     2      67999999999999999999999999877   899999999999999999999999999953

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=1.4e-35  Score=245.69  Aligned_cols=137  Identities=31%  Similarity=0.621  Sum_probs=128.0

Q ss_pred             ccCCceeeeeCCCCeEEecCCCceEeeec-CceeeeeccCCCCceEEEEEecCCC-CCccccCChHHHHHHHHHHhcCCC
Q 026757           91 SNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKFLAPP  168 (233)
Q Consensus        91 ~~~gf~~y~D~~dgYsf~yP~~W~e~~~~-G~d~~f~d~~~~~enVsVvv~P~~~-~si~dlGspeeva~~Ll~~~~~~~  168 (233)
                      .+.||++|.|+.+||+|.||.+|+++.++ |+|++|+|+.+..+||+|+|.|+++ ++|+|||+|++|+++|+++.++++
T Consensus         4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~   83 (165)
T 2xb3_A            4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS   83 (165)
T ss_dssp             --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred             CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence            45799999999999999999999999998 8999999999999999999999986 999999999999999999999877


Q ss_pred             --CCceeEEEeeEeccCCeEEEEEEEEEeCCC-----CcceEEEEEEEeCCeEEEEEEEecceeee
Q 026757          169 --TQKTKIIAASENDVDGKAYYAFEFTAQAPN-----YIRHALGVVTVGNGMKLITTREFEVHHFS  227 (233)
Q Consensus       169 --~~~a~ll~a~~r~~dGk~YY~~Ey~v~~~~-----~~RH~la~vtv~~gkLYtl~~q~~~~~f~  227 (233)
                        ++.++|+++++++.+|++||+|||.++.++     +.||+|+++++++||||+|++|+++.+|.
T Consensus        84 ~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~  149 (165)
T 2xb3_A           84 ESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWP  149 (165)
T ss_dssp             TSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHH
T ss_pred             CCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhH
Confidence              478999999999999999999999999887     89999999999999999999999999985

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=7.5e-37  Score=255.48  Aligned_cols=139  Identities=29%  Similarity=0.493  Sum_probs=131.4

Q ss_pred             cccCCceeeeeCCCCeEEecCCCceEeeec----CceeeeeccCCCCceEEEEEecCCC-CCccccCChHHHHHHHHHHh
Q 026757           90 ESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKF  164 (233)
Q Consensus        90 e~~~gf~~y~D~~dgYsf~yP~~W~e~~~~----G~d~~f~d~~~~~enVsVvv~P~~~-~si~dlGspeeva~~Ll~~~  164 (233)
                      +.+.||++|.|+.|||+|.||++|++++++    |+|++|+|+++..+||+|+|+|+++ ++|+|||+|++|+++|++++
T Consensus         9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~   88 (170)
T 2lnj_A            9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV   88 (170)
Confidence            356799999999999999999999998887    9999999999999999999999987 99999999999999999999


Q ss_pred             cCCC--CCceeEEEeeEeccCCeEEEEEEEEEeCC-CCcceEEEEEEEeCCeEEEEEEEecceeeeE
Q 026757          165 LAPP--TQKTKIIAASENDVDGKAYYAFEFTAQAP-NYIRHALGVVTVGNGMKLITTREFEVHHFSF  228 (233)
Q Consensus       165 ~~~~--~~~a~ll~a~~r~~dGk~YY~~Ey~v~~~-~~~RH~la~vtv~~gkLYtl~~q~~~~~f~~  228 (233)
                      ++++  ++.++||++++++.||++||+|||.++.+ ++.||+|++++|++||||+|++|+++.+|.-
T Consensus        89 ~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~  155 (170)
T 2lnj_A           89 NDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDT  155 (170)
Confidence            8887  47899999999999999999999999998 7999999999999999999999999999963

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=96.48  E-value=0.11  Score=41.42  Aligned_cols=119  Identities=13%  Similarity=0.036  Sum_probs=75.4

Q ss_pred             ceeeeeCCCCeEEecCCCceEeeecCceeeeeccCCCC--ceEEEEEecCCCCCccccCChHHHHHHHHHHhcCCCCCce
Q 026757           95 FLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPL--ESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKT  172 (233)
Q Consensus        95 f~~y~D~~dgYsf~yP~~W~e~~~~G~d~~f~d~~~~~--enVsVvv~P~~~~si~dlGspeeva~~Ll~~~~~~~~~~a  172 (233)
                      +..|  ..+.++|.+|.+|++..   .-+.+-....+.  -||.|...+..     +=.+.++..++-+++..+. ...-
T Consensus         3 m~~y--~~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~-----~~~~l~~~~~~q~~~l~~~-l~~y   71 (148)
T 1tu1_A            3 MTLY--RLHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQ-----GDAPFADYVARQLENAEKQ-LPGF   71 (148)
T ss_dssp             EEEE--ECSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHHHHHHHHH-STTC
T ss_pred             CceE--EECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCC-----CCCCHHHHHHHHHHHHHhh-CcCc
Confidence            5567  48899999999999542   233332222212  34444444332     2135555665544322110 1234


Q ss_pred             eEEEeeEeccCCeEEEEEEEEEeCCCCcceEEEEEEEeCCeEEEEEEEecce
Q 026757          173 KIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVH  224 (233)
Q Consensus       173 ~ll~a~~r~~dGk~YY~~Ey~v~~~~~~RH~la~vtv~~gkLYtl~~q~~~~  224 (233)
                      +++.......+|.+--.+||.=...+..+|++-++.+..+++|+|+.+++..
T Consensus        72 ~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~  123 (148)
T 1tu1_A           72 KLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPA  123 (148)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGG
T ss_pred             EEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCC
Confidence            5555444456888888888888888889999999999977999999999764

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=93.77  E-value=2.2  Score=34.84  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=67.9

Q ss_pred             CCeEEecCCCceEeeecCceeeee-ccCC--CCceEEEEEecCCCCCccccCChHHHHHHHHHHhcC-CCCCceeEEEee
Q 026757          103 DGYSFVYPFGWQEVIIEGQDKVFK-DVIE--PLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLA-PPTQKTKIIAAS  178 (233)
Q Consensus       103 dgYsf~yP~~W~e~~~~G~d~~f~-d~~~--~~enVsVvv~P~~~~si~dlGspeeva~~Ll~~~~~-~~~~~a~ll~a~  178 (233)
                      -++++-.|.||+.....|.-.... +...  -.-|+-|++.-...    |+  . |.+.+=+.+..+ -+  .-++++-.
T Consensus        18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~----~~--~-e~~r~el~~~~~~lp--~~~~~~r~   88 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT----GA--L-HNQRTELDQRATQLP--DYAERGRT   88 (161)
T ss_dssp             CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT----TH--H-HHHHHHHHHHHTTST--TCEEEEEE
T ss_pred             ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc----HH--H-HHHHHHHHHHHhhCC--CcEeeccc
Confidence            468999999999885555422222 2211  13677776653321    12  2 233333344332 22  23455545


Q ss_pred             EeccCCeEEEEEEEEEeCCCCcceE--EEEEEE-eCCeEEEE--EEEecceee
Q 026757          179 ENDVDGKAYYAFEFTAQAPNYIRHA--LGVVTV-GNGMKLIT--TREFEVHHF  226 (233)
Q Consensus       179 ~r~~dGk~YY~~Ey~v~~~~~~RH~--la~vtv-~~gkLYtl--~~q~~~~~f  226 (233)
                      ..+.+|.+-|..||.=..++.+.+.  +..+.| .++..|.+  ++++...|+
T Consensus        89 ~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~  141 (161)
T 3lyd_A           89 ETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQT  141 (161)
T ss_dssp             EEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGH
T ss_pred             ccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccc
Confidence            5589999999999997666666662  344444 47877777  888877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	2e-27

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  100 bits (251), Expect = 2e-27
 Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 24/145 (16%)

Query: 94  GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
            F +     DG+    P  W   +EV   GQ   F+D  +   +V V + PT K+ I DF
Sbjct: 2   DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDF 59

Query: 151 GPPQE----VAETLIKKFLAPPTQK-----------TKIIAASENDVDGKAYYAFEF--- 192
           G P++    V   L ++  +  T               ++  S  +V GK YY       
Sbjct: 60  GSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTR 119

Query: 193 TAQAPNYIRHALGVVTVGNGMKLIT 217
           TA      +H L   TV +G KL  
Sbjct: 120 TADGNEGGKHQLVTATVNDG-KLYI 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	97.69

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=4.7e-34  Score=236.58  Aligned_cols=132  Identities=23%  Similarity=0.409  Sum_probs=113.5

Q ss_pred             CceeeeeCCCCeEEecCCCceEee---ecCceeeeeccCCCCceEEEEEecCCCCCccccCChHHHHHHHH----HHhcC
Q 026757           94 GFLSVTDKKDGYSFVYPFGWQEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLI----KKFLA  166 (233)
Q Consensus        94 gf~~y~D~~dgYsf~yP~~W~e~~---~~G~d~~f~d~~~~~enVsVvv~P~~~~si~dlGspeeva~~Ll----~~~~~  166 (233)
                      +|++|.|  |||+|+||++|+++.   ..|+|++|+|+++..+||+|+|.|+++++|++||+|+++++++.    ++++.
T Consensus         2 ~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~   79 (171)
T d1v2ba_           2 DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYS   79 (171)
T ss_dssp             CEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC------
T ss_pred             CcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhc
Confidence            6999986  899999999998654   45899999999999999999999999999999999999998865    33333


Q ss_pred             CC-----------CCceeEEEeeEeccCCeEEEEEEEEEeCC---CCcceEEEEEEEeCCeEEEEEEEecceeee
Q 026757          167 PP-----------TQKTKIIAASENDVDGKAYYAFEFTAQAP---NYIRHALGVVTVGNGMKLITTREFEVHHFS  227 (233)
Q Consensus       167 ~~-----------~~~a~ll~a~~r~~dGk~YY~~Ey~v~~~---~~~RH~la~vtv~~gkLYtl~~q~~~~~f~  227 (233)
                      ++           ++.++|+++++++.||++||+|||.++.+   ++.||+|++++|++||||||++|+++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grLYtl~~~~pe~~w~  154 (171)
T d1v2ba_          80 GKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWF  154 (171)
T ss_dssp             ------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCS
T ss_pred             ccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeCCEEEEEEEecCHHHhh
Confidence            21           36789999999999999999999998865   478999999999999999999999999983

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.69  E-value=0.00044  Score=53.04  Aligned_cols=120  Identities=15%  Similarity=0.096  Sum_probs=81.8

Q ss_pred             ceeeeeCCCCeEEecCCCceEeeecCceeeeeccC-CCC--ceEEEEEecCCCCCccccCChHHHHHHHHHHhcCCCCCc
Q 026757           95 FLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVI-EPL--ESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQK  171 (233)
Q Consensus        95 f~~y~D~~dgYsf~yP~~W~e~~~~G~d~~f~d~~-~~~--enVsVvv~P~~~~si~dlGspeeva~~Ll~~~~~~~~~~  171 (233)
                      +..|.  .+.=+|.+|.+|++..+   . .|..+. +..  -||.|+..+..     +=.+++++.++.++..-+. ...
T Consensus         3 ~~~Y~--~~Egs~~lP~gw~d~t~---n-i~~~~~~~~~~~~~lvIsr~~l~-----~~~~l~~~~~~~~~~l~~~-l~~   70 (144)
T d1tu1a_           3 MTLYR--LHEADLEIPDAWQDQSI---N-IFKLPASGPAREASFVISRDASQ-----GDAPFADYVARQLENAEKQ-LPG   70 (144)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCB---E-EEEECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHHHHHHHHH-STT
T ss_pred             CceeE--EcCEEEeCCCCceeCcc---e-EEEecCCCCCcceEEEEEeecCC-----CCCCHHHHHHHHHHHHHhh-CCC
Confidence            44553  44458999999986532   2 233222 222  34555555532     2346677777755433211 124


Q ss_pred             eeEEEeeEeccCCeEEEEEEEEEeCCCCcceEEEEEEEeCCeEEEEEEEecceee
Q 026757          172 TKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGMKLITTREFEVHHF  226 (233)
Q Consensus       172 a~ll~a~~r~~dGk~YY~~Ey~v~~~~~~RH~la~vtv~~gkLYtl~~q~~~~~f  226 (233)
                      -++++..+...+|.+-+.+||.-...+...|+.-++.+.++++|+|+.++....|
T Consensus        71 ~~~~~~~~~~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~  125 (144)
T d1tu1a_          71 FKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADL  125 (144)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGH
T ss_pred             cEEEeeEecccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCC
Confidence            5788877778899999999999988888999999999999999999999987765