Citrus Sinensis ID: 026767

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHcccccccccHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHccHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNecgrsqpaSDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLaadkcnatnSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLArklptgdvsalkkanavqdeepldendlt
Flexible Loop (DISEMBL)
MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLIsaytegdveEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALkkanavqdeepldendlt
Low Complexity Region (SEG)
MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPasdalakaaraledaVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT
Disordered region (IsUnstruct)
*****************LAKELHNWREVADFYRKASELYNEC****************LEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKLP*************************
Disordered Region (DISOPRED)
**SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLA*****************************
Disordered Region (DISEMBL)
**************AAALAKELHNWREVADFYRKASELYNE*****************LEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKLPTGD**********************
Disordered Region (DISPRO)
**SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKLPT************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q9SPE5	291	Gamma-soluble NSF attachm	yes	no	0.982	0.786	0.742	3e-99
Q9U9R7	324	Gamma-soluble NSF attachm	yes	no	0.858	0.617	0.315	3e-22
P81127	312	Gamma-soluble NSF attachm	yes	no	0.939	0.701	0.260	8e-15
Q9CWZ7	312	Gamma-soluble NSF attachm	yes	no	0.939	0.701	0.251	1e-14
Q99747	312	Gamma-soluble NSF attachm	yes	no	0.939	0.701	0.251	3e-12

>sp|Q9SPE5|SNAG_ARATH Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1

 Score =  360 bits (925), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 173/233 (74%), Positives = 205/233 (87%), Gaps = 4/233 (1%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           M +SPWDAAKHMESAAALA++L  W EVADFYRKASELY ECGR+QPASDAL KAARALE
Sbjct: 63  MQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALGKAARALE 122

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           D  P+DAIQLYTDAC +LEED ++QMAFDLYRA  NVYIKLEK+ DAATF LR G+AADK
Sbjct: 123 DVKPDDAIQLYTDACEILEEDGRDQMAFDLYRACANVYIKLEKFTDAATFFLRLGVAADK 182

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           C+ATNSQCKAYLSAII+YLYA+D +QAEKCYNDCSQ+DAFL+SDQ+R A++L++AY EGD
Sbjct: 183 CDATNSQCKAYLSAIILYLYAHDLQQAEKCYNDCSQIDAFLKSDQSRSASRLLTAYNEGD 242

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
           +EEIK+VA +S +SNLDH+IIKLARKLPTGDV+A++    +   + LDE+DLT
Sbjct: 243 IEEIKKVASASTVSNLDHMIIKLARKLPTGDVTAIQ----MNTNDDLDEDDLT 291

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9U9R7|SNAG_DICDI Gamma-soluble NSF attachment protein OS=Dictyostelium discoideum GN=snpC PE=1 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 108/200 (54%)

Query: 8   AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDA 67
           AAK ME+A+A+AKEL   +E A+   ++ +LY   G S  A+D + KAA+ LED      
Sbjct: 78  AAKSMENASAMAKELKETQECANLLLESCKLYRTNGNSFQAADTMTKAAKLLEDIDLNQT 137

Query: 68  IQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127
           I+L TDAC + E DDK+  + D ++   ++ +K +KY +A   ++       K    +  
Sbjct: 138 IKLLTDACELFELDDKDHFSGDTFKQTISMLLKHKKYTEAVDLMILQNRVFVKLEQNHDL 197

Query: 128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRV 187
            K+ LS I + L  +D   ++K Y       +F+ S +   A +LI+A+   DV+ +K++
Sbjct: 198 HKSCLSVITISLATDDIVASKKYYEQFLDYPSFIHSQEGTTAQELITAFDNHDVDGVKKI 257

Query: 188 AQSSAISNLDHVIIKLARKL 207
                 + LD+ + K+A+ L
Sbjct: 258 VSRHIFNFLDNQVAKIAKNL 277

May be required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus (By similarity). Involved in vesicle fusion with nsfA and probably SNARE proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|P81127|SNAG_BOVIN Gamma-soluble NSF attachment protein OS=Bos taurus GN=NAPG PE=1 SV=3

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 6   WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPE 65
           + AAK  E A  + KE+    E      KAS +Y E G    A+ AL +A + +E+  PE
Sbjct: 72  FHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPE 131

Query: 66  DAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN 125
            A+QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +     
Sbjct: 132 KAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAAISIQKEKNIYKEIENYP 191

Query: 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIK 185
           +  K  ++ ++V+L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++ 
Sbjct: 192 TCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVA 251

Query: 186 RVAQSSAISNLDHVIIKLARKL--PTGDVSALKKANAVQDEEP 226
            V  S     +D+   KL   L  P G V   KKA A    +P
Sbjct: 252 EVCNSPLFKYMDNDYAKLGLSLVVPGGGVK--KKAAAPPQAKP 292

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Bos taurus (taxid: 9913)

>sp|Q9CWZ7|SNAG_MOUSE Gamma-soluble NSF attachment protein OS=Mus musculus GN=Napg PE=1 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 6   WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPE 65
           + AAK  E A  + KE+    E      KAS +Y E G    A+ AL +A + +E+  PE
Sbjct: 72  FHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPE 131

Query: 66  DAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN 125
            A+QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +     
Sbjct: 132 KAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYP 191

Query: 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIK 185
           +  K  ++ ++V+L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++ 
Sbjct: 192 TCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVS 251

Query: 186 RVAQSSAISNLDHVIIKLARKL--PTGDVSALKKANAVQDEEP 226
            V  S     +D+   KL   L  P G +   KK+ A    +P
Sbjct: 252 EVCNSPLFKYMDNDYAKLGLSLVVPGGGIK--KKSPATPQAKP 292

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Mus musculus (taxid: 10090)

>sp|Q99747|SNAG_HUMAN Gamma-soluble NSF attachment protein OS=Homo sapiens GN=NAPG PE=1 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 6   WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPE 65
           + AAK  E A  + KE+    E      KAS +Y E G    A+ AL +A + +E+  PE
Sbjct: 72  FHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPE 131

Query: 66  DAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN 125
            A+QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +     
Sbjct: 132 KAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYP 191

Query: 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIK 185
           +  K  ++ ++V+L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++ 
Sbjct: 192 TCYKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVS 251

Query: 186 RVAQSSAISNLDHVIIKLARKL--PTGDVSALKKANAVQDEEP 226
            V  S     +D+   KL   L  P G +   KK+ A    +P
Sbjct: 252 DVCNSPLFKYMDNDYAKLGLSLVVPGGGIK--KKSPATPQAKP 292

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
224115246	296	predicted protein [Populus trichocarpa]	1.0	0.787	0.836	1e-110
225444207	295	PREDICTED: gamma-soluble NSF attachment	1.0	0.789	0.828	1e-109
356556487	296	PREDICTED: gamma-soluble NSF attachment	1.0	0.787	0.815	1e-109
358344551	296	Gamma-soluble NSF attachment protein [Me	1.0	0.787	0.819	1e-109
224117848	296	predicted protein [Populus trichocarpa]	1.0	0.787	0.828	1e-108
357442887	296	Gamma-soluble NSF attachment protein [Me	1.0	0.787	0.815	1e-108
255578029	295	gamma-soluble nsf attachment protein, pu	0.995	0.786	0.802	1e-105
449435560	296	PREDICTED: gamma-soluble NSF attachment	1.0	0.787	0.785	1e-101
388508284	295	unknown [Lotus japonicus]	0.944	0.745	0.8	1e-101
242077210	295	hypothetical protein SORBIDRAFT_06g02874	0.991	0.783	0.751	4e-98

>gi|224115246|ref|XP_002332197.1| predicted protein [Populus trichocarpa] gi|222875304|gb|EEF12435.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/233 (83%), Positives = 213/233 (91%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           MLSSPWDAAKHMESAAALAKEL NW EV DFYR+ASELY ECGR QPASDALAKAARALE
Sbjct: 64  MLSSPWDAAKHMESAAALAKELGNWNEVTDFYRRASELYMECGRPQPASDALAKAARALE 123

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           DA+PE A+Q+Y DA  +LEED KEQMAFDLYRAAT+VY+KLEKY+DAA+ LL+ GLAADK
Sbjct: 124 DAMPEAAVQMYNDASAILEEDGKEQMAFDLYRAATSVYVKLEKYSDAASSLLQLGLAADK 183

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           CNATNSQCKAYL AIIVYLYA+DFKQAEKCYNDCSQVDAFLRSDQNRCA+KL+SAYTEGD
Sbjct: 184 CNATNSQCKAYLGAIIVYLYAHDFKQAEKCYNDCSQVDAFLRSDQNRCASKLLSAYTEGD 243

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
           +EEIKRV QSS +SNLDHV+IKLARKLPTGDVSALK     ++EEPLDENDLT
Sbjct: 244 IEEIKRVVQSSTVSNLDHVVIKLARKLPTGDVSALKTDVGKEEEEPLDENDLT 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444207|ref|XP_002276285.1| PREDICTED: gamma-soluble NSF attachment protein [Vitis vinifera] gi|296089230|emb|CBI39002.3| unnamed protein product [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/233 (82%), Positives = 213/233 (91%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           MLSS WDAAKHMESAAALAKEL+NW EVADFYR+ASELY ECGRSQPASDALAK ARALE
Sbjct: 63  MLSSQWDAAKHMESAAALAKELNNWGEVADFYRRASELYTECGRSQPASDALAKGARALE 122

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           DA P++AIQLYTDAC +LEED KE MAFDLYRAAT+VYIKLEKYADAATFLLRWGLAADK
Sbjct: 123 DAAPDEAIQLYTDACTILEEDGKEHMAFDLYRAATSVYIKLEKYADAATFLLRWGLAADK 182

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           C AT+SQ KAYLSAI+VYLYA+DFK+AEKCYNDCSQ+DAFL SDQ RCA+KL+SAY +GD
Sbjct: 183 CKATHSQFKAYLSAIVVYLYAHDFKEAEKCYNDCSQIDAFLSSDQGRCASKLLSAYADGD 242

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
           +EEIKRVAQSS ISNLDH+II+LARKLPTGDVSA+K     + EEPLDE+DLT
Sbjct: 243 IEEIKRVAQSSTISNLDHMIIRLARKLPTGDVSAMKANAGNEQEEPLDEDDLT 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556487|ref|XP_003546556.1| PREDICTED: gamma-soluble NSF attachment protein-like [Glycine max]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/233 (81%), Positives = 214/233 (91%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           MLSSPWDAAKHMESAAALAK+L +W+EV DFYRKASELY ECGR QPASDALAK ARALE
Sbjct: 64  MLSSPWDAAKHMESAAALAKDLRHWQEVVDFYRKASELYMECGRPQPASDALAKGARALE 123

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           D++ E+AIQLYTDAC +LE+D +EQMAFDLYRAATNVYIKLEKY DAA+F+LR G AADK
Sbjct: 124 DSMSEEAIQLYTDACTILEDDGREQMAFDLYRAATNVYIKLEKYTDAASFMLRLGFAADK 183

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           CNATNSQCKAYL+AI++YLYA+DF QAEKCYNDCSQ+DAFLRSDQNRCA+ L++AYT+GD
Sbjct: 184 CNATNSQCKAYLNAIVIYLYAHDFNQAEKCYNDCSQIDAFLRSDQNRCASNLLAAYTDGD 243

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
           VEEIKR+AQSS IS+LDHVIIKLARKLPTGDVS+LK   A  +EEPLDENDLT
Sbjct: 244 VEEIKRIAQSSVISHLDHVIIKLARKLPTGDVSSLKANKAEDEEEPLDENDLT 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344551|ref|XP_003636352.1| Gamma-soluble NSF attachment protein [Medicago truncatula] gi|217072584|gb|ACJ84652.1| unknown [Medicago truncatula] gi|355502287|gb|AES83490.1| Gamma-soluble NSF attachment protein [Medicago truncatula] gi|388510514|gb|AFK43323.1| unknown [Medicago truncatula]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/233 (81%), Positives = 213/233 (91%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           MLSSPWDAAKHMESAAALAKEL NWREVADFY+KASELY ECGR QPASDALAK ARALE
Sbjct: 64  MLSSPWDAAKHMESAAALAKELSNWREVADFYQKASELYMECGRPQPASDALAKGARALE 123

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           D +PE+AIQLYTDAC +LE+D+KEQM FDLYRA T+VYIKLEKY DAA+ LLR GLAADK
Sbjct: 124 DTMPEEAIQLYTDACTILEDDEKEQMTFDLYRAVTSVYIKLEKYTDAASSLLRLGLAADK 183

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           CNATNSQ KAYLSAIIVYLYA+DFKQAEKCYNDCSQ+DAFL+SD NRCA+K +SAYT+GD
Sbjct: 184 CNATNSQSKAYLSAIIVYLYAHDFKQAEKCYNDCSQIDAFLKSDHNRCASKFLSAYTDGD 243

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
           V+EIK++AQSSA+S+LDH II+LARKLPTGDVSALK + A  DE+ LDENDLT
Sbjct: 244 VDEIKKIAQSSAVSHLDHAIIRLARKLPTGDVSALKTSTAEDDEDSLDENDLT 296

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117848|ref|XP_002317683.1| predicted protein [Populus trichocarpa] gi|118486827|gb|ABK95248.1| unknown [Populus trichocarpa] gi|222860748|gb|EEE98295.1| predicted protein [Populus trichocarpa]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/233 (82%), Positives = 213/233 (91%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           MLSSPWDAAK MESAAALAKEL NW EV+DFYR+ASELY ECGR QPASDALAKAARALE
Sbjct: 64  MLSSPWDAAKDMESAAALAKELGNWNEVSDFYRRASELYMECGRPQPASDALAKAARALE 123

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           D +P+ A+QLY DA  +LEED KEQMAFDLYRAA++VYIKLEKY+DAA  LL+ GLAADK
Sbjct: 124 DTIPDAAVQLYNDASTILEEDGKEQMAFDLYRAASSVYIKLEKYSDAAASLLQLGLAADK 183

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           CNATNSQCKAYL AIIVYLYA+DFKQAEKCYNDCSQVDAFLRSDQNRCA+KL+SAYTEGD
Sbjct: 184 CNATNSQCKAYLGAIIVYLYAHDFKQAEKCYNDCSQVDAFLRSDQNRCASKLLSAYTEGD 243

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
           +EEIKR+AQS+ +SNLDHV+IKLARKLPTGDVSALK   A ++EEPLDENDLT
Sbjct: 244 IEEIKRLAQSNTVSNLDHVVIKLARKLPTGDVSALKTDAAKEEEEPLDENDLT 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442887|ref|XP_003591721.1| Gamma-soluble NSF attachment protein [Medicago truncatula] gi|355480769|gb|AES61972.1| Gamma-soluble NSF attachment protein [Medicago truncatula]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/233 (81%), Positives = 212/233 (90%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           MLSSPWDAAKHMESAAALAKEL NWREVADFY+KASELY ECGR QPASDALAK ARALE
Sbjct: 64  MLSSPWDAAKHMESAAALAKELSNWREVADFYQKASELYMECGRPQPASDALAKGARALE 123

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           D +PE+AIQLY DAC +LE+D+KEQM FDLYRA T+VYIKLEKY DAA+ LLR GLAADK
Sbjct: 124 DTMPEEAIQLYIDACTILEDDEKEQMTFDLYRAVTSVYIKLEKYTDAASSLLRLGLAADK 183

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           CNATNSQ KAYLSAIIVYLYA+DFKQAEKCYNDCSQ+DAFL+SD NRCA+K +SAYT+GD
Sbjct: 184 CNATNSQSKAYLSAIIVYLYAHDFKQAEKCYNDCSQIDAFLKSDHNRCASKFLSAYTDGD 243

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
           V+EIK++AQSSA+S+LDH II+LARKLPTGDVSALK + A  DE+ LDENDLT
Sbjct: 244 VDEIKKIAQSSAVSHLDHAIIRLARKLPTGDVSALKTSTAEDDEDSLDENDLT 296

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578029|ref|XP_002529885.1| gamma-soluble nsf attachment protein, putative [Ricinus communis] gi|223530612|gb|EEF32488.1| gamma-soluble nsf attachment protein, putative [Ricinus communis]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/233 (80%), Positives = 209/233 (89%), Gaps = 1/233 (0%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           +LSSPWDAAKHMESAAALAKEL NW EVAD Y+KASELY ECGRSQPASDALAK ARALE
Sbjct: 64  ILSSPWDAAKHMESAAALAKELRNWNEVADLYKKASELYIECGRSQPASDALAKGARALE 123

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           DAVP+ A+QLYTD+C++LEED KEQMAFDLYRAA +VYIKLEKY DAA  LLR G+AA  
Sbjct: 124 DAVPDAAVQLYTDSCVILEEDGKEQMAFDLYRAAASVYIKLEKYTDAAAILLRLGVAASN 183

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           CNATNSQCKAYLSAIIVYLYA+DFKQAE+CYNDCSQ+DAFL SDQNR  +KL+SAY EGD
Sbjct: 184 CNATNSQCKAYLSAIIVYLYAHDFKQAEQCYNDCSQIDAFLSSDQNRSVSKLLSAYREGD 243

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
           +EEIKR+ QSS IS+LD+VIIKLARKLPTGD++A  K +A +DEEPLDENDLT
Sbjct: 244 IEEIKRLVQSSTISHLDNVIIKLARKLPTGDINAF-KTDAAKDEEPLDENDLT 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435560|ref|XP_004135563.1| PREDICTED: gamma-soluble NSF attachment protein-like [Cucumis sativus]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/233 (78%), Positives = 203/233 (87%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           MLSSPWDAAKHMESA ALAKEL N  EVADFYR+ASELY  CGRSQPASDAL+K A ALE
Sbjct: 64  MLSSPWDAAKHMESAGALAKELGNLTEVADFYRRASELYVLCGRSQPASDALSKGAHALE 123

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           D+ P++AI LYT+AC +LE+D +EQMAFDLYR AT+V++KLEKY+DAA  LLRWGLAADK
Sbjct: 124 DSKPDEAITLYTEACTLLEDDGREQMAFDLYRDATSVFVKLEKYSDAAELLLRWGLAADK 183

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           CNA +SQ KAYLSAIIVYLYA+DFKQAEKCYNDCSQVDAF R+DQ R A+KL+SAY EGD
Sbjct: 184 CNAVHSQGKAYLSAIIVYLYAHDFKQAEKCYNDCSQVDAFTRTDQYRAASKLLSAYREGD 243

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
           VEEIKRVAQSS IS+LDHVII+LARKLPTGDVSALK       EE LDENDLT
Sbjct: 244 VEEIKRVAQSSTISHLDHVIIRLARKLPTGDVSALKTDTTEDQEEALDENDLT 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508284|gb|AFK42208.1| unknown [Lotus japonicus]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/220 (80%), Positives = 197/220 (89%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           MLSSPWDAAKHMESAAALAKEL NWRE ADFYRKASELY EC R QPASDAL K ARALE
Sbjct: 64  MLSSPWDAAKHMESAAALAKELSNWREAADFYRKASELYMECDRPQPASDALGKGARALE 123

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           DA+PE+A+QLY DAC +LEED KEQM FDLYRAA++VYIKLEKY D A+ +L  GLAADK
Sbjct: 124 DAMPEEAVQLYADACTILEEDGKEQMTFDLYRAASSVYIKLEKYTDVASVMLNLGLAADK 183

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           CNATNS+CKAYL AII+YLYA+DFKQA+KCYNDCSQ+DAFL SDQ+RCA+K ++AYT+GD
Sbjct: 184 CNATNSRCKAYLGAIIIYLYAHDFKQAQKCYNDCSQIDAFLSSDQSRCASKFLAAYTDGD 243

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANA 220
           VEEIKR+AQSSA+S+LDHVIIKLARKLPTGDVS  K A A
Sbjct: 244 VEEIKRIAQSSAVSHLDHVIIKLARKLPTGDVSGFKTATA 283

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242077210|ref|XP_002448541.1| hypothetical protein SORBIDRAFT_06g028740 [Sorghum bicolor] gi|241939724|gb|EES12869.1| hypothetical protein SORBIDRAFT_06g028740 [Sorghum bicolor]

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 175/233 (75%), Positives = 203/233 (87%), Gaps = 2/233 (0%)

Query: 1   MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE 60
           M+SSPWDAAKHMESAAALAK+L  W EV+DFY +ASELY ECGRSQPASDALAK A ALE
Sbjct: 65  MISSPWDAAKHMESAAALAKDLGRWNEVSDFYHRASELYRECGRSQPASDALAKGASALE 124

Query: 61  DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
           +  PE+AI++Y +AC +LEED KEQMAFDLYRAA  +YIK+EKY+DAA F LR G +ADK
Sbjct: 125 EKSPEEAIKMYDEACSVLEEDGKEQMAFDLYRAAAALYIKMEKYSDAAAFFLRLGSSADK 184

Query: 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
           CNA NSQCKAYLSAIIVYLYA+DF+QA+KCYNDCS+V AFL SDQNRCATKL+SAY EGD
Sbjct: 185 CNAINSQCKAYLSAIIVYLYAHDFQQAQKCYNDCSEVQAFLNSDQNRCATKLLSAYEEGD 244

Query: 181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
            EEIKR+AQSSA ++LDHV+I+LARKLPTGD+ A+KKA+    EE LDE+DLT
Sbjct: 245 AEEIKRIAQSSAFNHLDHVVIRLARKLPTGDLQAIKKAD--DGEESLDEDDLT 295

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2128669	291	GSNAP "AT4G20410" [Arabidopsis	0.982	0.786	0.695	7.2e-84
DICTYBASE|DDB_G0269186	324	snpC "soluble NSF attachment p	0.969	0.697	0.256	1.2e-19
ZFIN|ZDB-GENE-050320-46	308	napgl "N-ethylmaleimide-sensit	0.978	0.740	0.25	5.1e-16
UNIPROTKB|E1BWS2	314	NAPG "Uncharacterized protein"	0.927	0.687	0.237	7e-15
UNIPROTKB|P81127	312	NAPG "Gamma-soluble NSF attach	0.931	0.695	0.239	2e-14
MGI|MGI:104561	312	Napg "N-ethylmaleimide sensiti	0.931	0.695	0.230	2.5e-14
UNIPROTKB|Q99747	312	NAPG "Gamma-soluble NSF attach	0.931	0.695	0.230	4.4e-14
UNIPROTKB|E2R561	311	NAPG "Uncharacterized protein"	0.914	0.684	0.235	1.2e-13
RGD|1310109	230	Napg "N-ethylmaleimide-sensiti	0.888	0.9	0.218	1.2e-12
UNIPROTKB|B4DFC9	230	NAPG "Gamma-soluble NSF attach	0.888	0.9	0.218	1.9e-12

TAIR|locus:2128669 GSNAP "AT4G20410" [Arabidopsis thaliana (taxid:3702)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 162/233 (69%), Positives = 192/233 (82%)

Query:     1 MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXX 60
             M +SPWDAAKHMESAAALA++L  W EVADFYRKASELY ECGR+QP             
Sbjct:    63 MQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALGKAARALE 122

Query:    61 XXVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120
                P+DAIQLYTDAC +LEED ++QMAFDLYRA  NVYIKLEK+ DAATF LR G+AADK
Sbjct:   123 DVKPDDAIQLYTDACEILEEDGRDQMAFDLYRACANVYIKLEKFTDAATFFLRLGVAADK 182

Query:   121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD 180
             C+ATNSQCKAYLSAII+YLYA+D +QAEKCYNDCSQ+DAFL+SDQ+R A++L++AY EGD
Sbjct:   183 CDATNSQCKAYLSAIILYLYAHDLQQAEKCYNDCSQIDAFLKSDQSRSASRLLTAYNEGD 242

Query:   181 VEEIKRVAQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
             +EEIK+VA +S +SNLDH+IIKLARKLPTGDV+A++  N   D   LDE+DLT
Sbjct:   243 IEEIKKVASASTVSNLDHMIIKLARKLPTGDVTAIQM-NTNDD---LDEDDLT 291

GO:0005215 "transporter activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0269186 snpC "soluble NSF attachment protein gamma isoform" [Dictyostelium discoideum (taxid:44689)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 58/226 (25%), Positives = 103/226 (45%)

Query:     8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDA 67
             AAK ME+A+A+AKEL   +E A+   ++ +LY   G S                      
Sbjct:    78 AAKSMENASAMAKELKETQECANLLLESCKLYRTNGNSFQAADTMTKAAKLLEDIDLNQT 137

Query:    68 IQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127
             I+L TDAC + E DDK+  + D ++   ++ +K +KY +A   ++       K    +  
Sbjct:   138 IKLLTDACELFELDDKDHFSGDTFKQTISMLLKHKKYTEAVDLMILQNRVFVKLEQNHDL 197

Query:   128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRV 187
              K+ LS I + L  +D   ++K Y       +F+ S +   A +LI+A+   DV+ +K++
Sbjct:   198 HKSCLSVITISLATDDIVASKKYYEQFLDYPSFIHSQEGTTAQELITAFDNHDVDGVKKI 257

Query:   188 AQSSAISNLDHVIIKLARKLPTGDVSALKKANAVQDEEPLDENDLT 233
                   + LD+ + K+A+ L     S     N+   ++       T
Sbjct:   258 VSRHIFNFLDNQVAKIAKNLSISKDSLNPTINSTAPQQQYSNTTTT 303

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005483 "soluble NSF attachment protein activity" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-050320-46 napgl "N-ethylmaleimide-sensitive factor attachment protein, gamma, like" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 5.1e-16, P = 5.1e-16
 Identities = 58/232 (25%), Positives = 102/232 (43%)

Query:     4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXV 63
             S + AAK  E A  + K+L    E   +  KAS +Y E G                    
Sbjct:    69 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLD 128

Query:    64 PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA 123
                A+ LY  A  + E +++ + A +L   A+ + ++ +K+ +AA  L +      +   
Sbjct:   129 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 188

Query:   124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEE 183
               +  K  ++ ++V L+  D+  A+KC  +   +  F  S+       L+ AY E D E+
Sbjct:   189 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQ 248

Query:   184 IKRVAQSSAISNLDHVIIKLA--RKLPTGDVSA--LKKANAVQDEEPLDEND 231
             + RV +S  ++ +D+   KLA   K+P G       KK +A    +P +E D
Sbjct:   249 LLRVCRSPLVTYMDNDYAKLAISLKVPGGGGGGGGKKKPSASASAQPQEEED 300

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1BWS2 NAPG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 52/219 (23%), Positives = 93/219 (42%)

Query:     8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDA 67
             AAK  E A  + KE+    E      KAS +Y E G                    PE A
Sbjct:    74 AAKAYEQAGMMLKEMQRLPEAVQLIEKASMMYLENGTPDTAAIALERAGKLIENVSPEKA 133

Query:    68 IQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127
             +QLY  A  + E +++ + A ++   A+ + ++  +  +AA  L +      +     + 
Sbjct:   134 VQLYQQAASVFENEERLRQALEMLGKASRLLVRGRRLDEAALSLQKEKSIYKEIENYPTC 193

Query:   128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRV 187
              K  ++ ++V+L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++  V
Sbjct:   194 YKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVSEV 253

Query:   188 AQSSAISNLDHVIIKLARKL--PTGDVSALKKANAVQDE 224
                     +D+   KL   L  P G +   K  NA QD+
Sbjct:   254 CNLPLFKYMDNDYAKLGLTLVVPGGGIKK-KSPNATQDK 291

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|P81127 NAPG "Gamma-soluble NSF attachment protein" [Bos taurus (taxid:9913)]

 Score = 187 (70.9 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 53/221 (23%), Positives = 94/221 (42%)

Query:     8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDA 67
             AAK  E A  + KE+    E      KAS +Y E G                    PE A
Sbjct:    74 AAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKA 133

Query:    68 IQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127
             +QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +     + 
Sbjct:   134 VQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAAISIQKEKNIYKEIENYPTC 193

Query:   128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRV 187
              K  ++ ++V+L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++  V
Sbjct:   194 YKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVAEV 253

Query:   188 AQSSAISNLDHVIIKLARKL--PTGDVSALKKANAVQDEEP 226
               S     +D+   KL   L  P G V   KKA A    +P
Sbjct:   254 CNSPLFKYMDNDYAKLGLSLVVPGGGVK--KKAAAPPQAKP 292

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:104561 Napg "N-ethylmaleimide sensitive fusion protein attachment protein gamma" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 51/221 (23%), Positives = 94/221 (42%)

Query:     8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDA 67
             AAK  E A  + KE+    E      KAS +Y E G                    PE A
Sbjct:    74 AAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKA 133

Query:    68 IQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127
             +QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +     + 
Sbjct:   134 VQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTC 193

Query:   128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRV 187
              K  ++ ++V+L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++  V
Sbjct:   194 YKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVSEV 253

Query:   188 AQSSAISNLDHVIIKLARKL--PTGDVSALKKANAVQDEEP 226
               S     +D+   KL   L  P G +   KK+ A    +P
Sbjct:   254 CNSPLFKYMDNDYAKLGLSLVVPGGGIK--KKSPATPQAKP 292

GO:0005739 "mitochondrion" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q99747 NAPG "Gamma-soluble NSF attachment protein" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 51/221 (23%), Positives = 94/221 (42%)

Query:     8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDA 67
             AAK  E A  + KE+    E      KAS +Y E G                    PE A
Sbjct:    74 AAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKA 133

Query:    68 IQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127
             +QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +     + 
Sbjct:   134 VQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTC 193

Query:   128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRV 187
              K  ++ ++V+L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++  V
Sbjct:   194 YKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVSDV 253

Query:   188 AQSSAISNLDHVIIKLARKL--PTGDVSALKKANAVQDEEP 226
               S     +D+   KL   L  P G +   KK+ A    +P
Sbjct:   254 CNSPLFKYMDNDYAKLGLSLVVPGGGIK--KKSPATPQAKP 292

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0050821 "protein stabilization" evidence=NAS

GO:0006461 "protein complex assembly" evidence=NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=TAS

UNIPROTKB|E2R561 NAPG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 51/217 (23%), Positives = 92/217 (42%)

Query:     8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDA 67
             AAK  E A  + KE+    E      KAS +Y E G                    PE A
Sbjct:    74 AAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKA 133

Query:    68 IQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127
             +QLY     + E +++ + A +L   A+ + ++  ++ +AA  + +      +     + 
Sbjct:   134 VQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTC 193

Query:   128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRV 187
              K  ++ ++V+L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++  V
Sbjct:   194 YKKTIAQVLVHLHRNDYVAAERCVRESYSIPGFSGSEDCAALEQLLEGYDQQDQDQVSDV 253

Query:   188 AQSSAISNLDHVIIKLARKL--PTGDVSALKKANAVQ 222
               S     +D+   KL   L  P G +   KK  A Q
Sbjct:   254 CNSPLFKYMDNDYAKLGLSLVVPGGGIK--KKPAAPQ 288

GO:0005739 "mitochondrion" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|1310109 Napg "N-ethylmaleimide-sensitive factor attachment protein, gamma" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 46/211 (21%), Positives = 89/211 (42%)

Query:    18 LAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIM 77
             + KE+    E      KAS +Y E G                    PE A+QLY     +
Sbjct:     2 MLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANV 61

Query:    78 LEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV 137
              E +++ + A +L   A+ + ++  ++ +AA  + +      +     +  K  ++ ++V
Sbjct:    62 FENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCYKKTIAQVLV 121

Query:   138 YLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLD 197
             +L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++  V  S     +D
Sbjct:   122 HLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVSEVCNSPLFKYMD 181

Query:   198 HVIIKLARKL--PTGDVSALKKANAVQDEEP 226
             +   KL   L  P G +   KK+ A    +P
Sbjct:   182 NDYAKLGLSLVVPGGGIK--KKSPATPQAKP 210

GO:0005739 "mitochondrion" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|B4DFC9 NAPG "Gamma-soluble NSF attachment protein" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 46/211 (21%), Positives = 89/211 (42%)

Query:    18 LAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIM 77
             + KE+    E      KAS +Y E G                    PE A+QLY     +
Sbjct:     2 MLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANV 61

Query:    78 LEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV 137
              E +++ + A +L   A+ + ++  ++ +AA  + +      +     +  K  ++ ++V
Sbjct:    62 FENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCYKKTIAQVLV 121

Query:   138 YLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLD 197
             +L+ ND+  AE+C  +   +  F  S+      +L+  Y + D +++  V  S     +D
Sbjct:   122 HLHRNDYVAAERCVRESYSIPGFNGSEDCAALEQLLEGYDQQDQDQVSDVCNSPLFKYMD 181

Query:   198 HVIIKLARKL--PTGDVSALKKANAVQDEEP 226
             +   KL   L  P G +   KK+ A    +P
Sbjct:   182 NDYAKLGLSLVVPGGGIK--KKSPATPQAKP 210

GO:0006886 "intracellular protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SPE5	SNAG_ARATH	No assigned EC number	0.7424	0.9828	0.7869	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02020010 hypothetical protein (296 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.97
KOG1585	308	consensus Protein required for fusion of vesicles	99.97
KOG1586	288	consensus Protein required for fusion of vesicles	99.95
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.89
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.79
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.76
KOG1586	288	consensus Protein required for fusion of vesicles	99.72
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.72
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.71
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.69
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.69
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.68
KOG1585	308	consensus Protein required for fusion of vesicles	99.57
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.54
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.49
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.44
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.42
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.38
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.36
PRK04841	903	transcriptional regulator MalT; Provisional	99.33
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.32
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.31
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.31
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.31
PRK11189	296	lipoprotein NlpI; Provisional	99.3
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.28
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.27
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.27
PRK12370	553	invasion protein regulator; Provisional	99.22
PRK04841	903	transcriptional regulator MalT; Provisional	99.22
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.22
KOG1126	638	consensus DNA-binding cell division cycle control	99.2
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.19
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.19
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.19
PRK12370	553	invasion protein regulator; Provisional	99.18
KOG1126	638	consensus DNA-binding cell division cycle control	99.17
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.16
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.15
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.15
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.14
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.12
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.11
KOG2003	840	consensus TPR repeat-containing protein [General f	99.11
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.1
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.09
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.09
PRK15359	144	type III secretion system chaperone protein SscB;	99.08
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.06
PRK15359	144	type III secretion system chaperone protein SscB;	99.06
KOG1129	478	consensus TPR repeat-containing protein [General f	99.04
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.03
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.03
PRK11189	296	lipoprotein NlpI; Provisional	99.03
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.02
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.01
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.96
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.94
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.9
KOG2003	840	consensus TPR repeat-containing protein [General f	98.9
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.87
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.82
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.81
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.8
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.79
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.78
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.77
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.76
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.75
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.75
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.74
KOG0553	304	consensus TPR repeat-containing protein [General f	98.74
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.73
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.72
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.72
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.71
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.7
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.7
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.7
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.69
PF12688	120	TPR_5: Tetratrico peptide repeat	98.68
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.67
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.67
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.67
KOG1125	579	consensus TPR repeat-containing protein [General f	98.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.63
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.62
KOG0553	304	consensus TPR repeat-containing protein [General f	98.61
PF12688	120	TPR_5: Tetratrico peptide repeat	98.6
KOG1125	579	consensus TPR repeat-containing protein [General f	98.6
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.58
KOG1129	478	consensus TPR repeat-containing protein [General f	98.55
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.51
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.5
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.5
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.49
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.49
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.49
PRK14574	822	hmsH outer membrane protein; Provisional	98.45
PRK10803	263	tol-pal system protein YbgF; Provisional	98.41
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.37
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.36
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.36
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.36
KOG4555	175	consensus TPR repeat-containing protein [Function	98.34
PRK10803	263	tol-pal system protein YbgF; Provisional	98.33
KOG2076	895	consensus RNA polymerase III transcription factor	98.31
PRK14574	822	hmsH outer membrane protein; Provisional	98.31
PLN03218	1060	maturation of RBCL 1; Provisional	98.29
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.29
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.28
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.27
KOG4555	175	consensus TPR repeat-containing protein [Function	98.24
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.23
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.23
PLN03218	1060	maturation of RBCL 1; Provisional	98.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.15
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	98.14
PLN03077	857	Protein ECB2; Provisional	98.12
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	98.12
KOG2076	895	consensus RNA polymerase III transcription factor	98.11
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.08
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.07
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.06
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.05
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.04
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.02
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	98.0
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.99
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.99
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.98
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.95
PLN03077	857	Protein ECB2; Provisional	97.95
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.94
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.88
PRK15331	165	chaperone protein SicA; Provisional	97.87
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.86
PLN02789	320	farnesyltranstransferase	97.86
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.84
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.84
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.84
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.82
KOG4234	271	consensus TPR repeat-containing protein [General f	97.81
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.8
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.8
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.78
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.76
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.74
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.73
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.72
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.71
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.68
PF13371	73	TPR_9: Tetratricopeptide repeat	97.68
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	97.67
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.67
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.66
PLN02789	320	farnesyltranstransferase	97.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.63
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.63
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.61
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.61
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.59
PRK15331	165	chaperone protein SicA; Provisional	97.58
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	97.57
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.57
PF13371	73	TPR_9: Tetratricopeptide repeat	97.56
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.55
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.54
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.53
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.5
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.49
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.49
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.48
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	97.45
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.45
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.45
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.45
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.43
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.41
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.41
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.4
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.4
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.39
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.37
KOG4234	271	consensus TPR repeat-containing protein [General f	97.37
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.36
PF13512	142	TPR_18: Tetratricopeptide repeat	97.36
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.33
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.32
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.31
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.3
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.29
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.27
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.24
PRK11906	458	transcriptional regulator; Provisional	97.21
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.21
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.19
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.17
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.12
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.1
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.1
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.07
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.06
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.04
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.03
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.03
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.01
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.97
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.89
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.85
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.85
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.84
KOG2581	493	consensus 26S proteasome regulatory complex, subun	96.84
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.77
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.77
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.76
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.75
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.75
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.7
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.7
PF13512	142	TPR_18: Tetratricopeptide repeat	96.65
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.64
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.64
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.6
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.6
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.58
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.43
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.36
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	96.36
PF13428	44	TPR_14: Tetratricopeptide repeat	96.32
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.29
PF13431	34	TPR_17: Tetratricopeptide repeat	96.26
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.26
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.26
PF13431	34	TPR_17: Tetratricopeptide repeat	96.25
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.25
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.15
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.15
PRK11906	458	transcriptional regulator; Provisional	96.14
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.14
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.11
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.11
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.06
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.03
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.01
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.89
KOG1463	411	consensus 26S proteasome regulatory complex, subun	95.87
KOG0687	393	consensus 26S proteasome regulatory complex, subun	95.85
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	95.81
KOG2471	696	consensus TPR repeat-containing protein [General f	95.8
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.77
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.61
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.55
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.51
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.5
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.5
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.42
KOG2471	696	consensus TPR repeat-containing protein [General f	95.37
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.35
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.31
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.07
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.04
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	95.04
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.01
PF13428	44	TPR_14: Tetratricopeptide repeat	95.01
KOG3024	312	consensus Uncharacterized conserved protein [Funct	94.98
COG5159	421	RPN6 26S proteasome regulatory complex component [	94.86
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.83
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.82
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.69
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.6
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.5
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	94.44
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.34
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.34
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.02
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.98
KOG2041	1189	consensus WD40 repeat protein [General function pr	93.79
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.78
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	93.69
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.68
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	93.62
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.35
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	93.31
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.26
KOG2908	380	consensus 26S proteasome regulatory complex, subun	93.1
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	92.92
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.79
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.68
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.62
KOG0687	393	consensus 26S proteasome regulatory complex, subun	92.42
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.33
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.15
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	91.97
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.86
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.45
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.34
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.32
KOG4014	248	consensus Uncharacterized conserved protein (conta	91.11
COG5159	421	RPN6 26S proteasome regulatory complex component [	90.74
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	90.73
COG5187	412	RPN7 26S proteasome regulatory complex component,	90.67
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.64
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	90.42
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.34
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.34
KOG2041	1189	consensus WD40 repeat protein [General function pr	90.32
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	90.28
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.14
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	89.85
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.74
PF04212	69	MIT: MIT (microtubule interacting and transport) d	89.68
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.54
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	89.36
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	89.21
PRK10941	269	hypothetical protein; Provisional	89.17
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	89.17
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	89.13
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.12
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	88.98
PF04212	69	MIT: MIT (microtubule interacting and transport) d	88.9
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.77
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	88.63
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	88.54
KOG1915	677	consensus Cell cycle control protein (crooked neck	88.45
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	88.09
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	88.08
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	87.72
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.6
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	87.36
COG4976	287	Predicted methyltransferase (contains TPR repeat)	87.26
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.9
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	86.74
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.66
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	86.65
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.24
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	86.16
KOG4814	872	consensus Uncharacterized conserved protein [Funct	85.93
KOG2908	380	consensus 26S proteasome regulatory complex, subun	85.86
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	85.3
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.09
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	85.06
COG2178	204	Predicted RNA-binding protein of the translin fami	84.99
PF12854	34	PPR_1: PPR repeat	84.83
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	84.4
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	84.24
PF12854	34	PPR_1: PPR repeat	84.1
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	84.03
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	83.81
cd02656	75	MIT MIT: domain contained within Microtubule Inter	83.34
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	83.26
COG3898	531	Uncharacterized membrane-bound protein [Function u	82.84
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	82.51
COG5187	412	RPN7 26S proteasome regulatory complex component,	81.8
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	81.77
COG3947	361	Response regulator containing CheY-like receiver a	81.72
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	81.66
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	81.62
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	81.27
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	80.72
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	80.52

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.97  E-value=2.5e-30  Score=216.95  Aligned_cols=206  Identities=29%  Similarity=0.371  Sum_probs=182.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHH
Q 026767            2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLE   79 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~   79 (233)
                      +++++.++++|.+++.+|+.. ++++|+.+|++|+.+|...|++..+|.++.++|.+|+ . |++++|+++|++|+++|+
T Consensus        68 ~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~  146 (282)
T PF14938_consen   68 LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE  146 (282)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            578999999999999999976 9999999999999999999999999999999999999 7 899999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH-hHHHHHHHHHhhCCHHHHHHHHHHhh-cC
Q 026767           80 EDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK-AYLSAIIVYLYANDFKQAEKCYNDCS-QV  157 (233)
Q Consensus        80 ~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~-~~~~lg~~~~~~gd~~~A~~~~~~al-~~  157 (233)
                      ..+....+..++.++|.++.++|+|++|++.|++.+..+.+.+.....++ .+++.++|++..||++.|.+.++++. ..
T Consensus       147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~  226 (282)
T PF14938_consen  147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD  226 (282)
T ss_dssp             HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred             HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999987766665554454 45899999999999999999999998 56


Q ss_pred             CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc-ccccchHHHHHHhccCC
Q 026767          158 DAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS-AISNLDHVIIKLARKLP  208 (233)
Q Consensus       158 ~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l~  208 (233)
                      ++|.+++|+.++..|+++++.||.+.+.+++.++ .+++||+|.+.|+.+++
T Consensus       227 ~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k  278 (282)
T PF14938_consen  227 PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIK  278 (282)
T ss_dssp             TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999 99999999999987654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.5e-30  Score=202.53  Aligned_cols=222  Identities=51%  Similarity=0.815  Sum_probs=213.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhc
Q 026767            2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      ..++|++|++|++++.+.+....+.|++++|++|..+|.+.|++..++.++.+.|.+++..+|+.|++.|++++.++++.
T Consensus        64 nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen   64 NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL  161 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~  161 (233)
                      ++.+++...+...+.++++..+|.+|...+.+-..+..+........+.+....++|+...||+.|.++++.+.+++.|.
T Consensus       144 dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~  223 (308)
T KOG1585|consen  144 DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL  223 (308)
T ss_pred             chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence            99999999999999999999999999999999999998988889999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHhcCCHHHHHHHHhhcccccchHHHHHHhccC--CCCchh--hhhhhhcCCC
Q 026767          162 RSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKL--PTGDVS--ALKKANAVQD  223 (233)
Q Consensus       162 ~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~~~~~ld~~~~~l~~~l--~~~~~~--~~~~~~~~~~  223 (233)
                      .+++++++++|+.+|..||.+.+...+..+.++.||+++.+|.+.|  |.|+++  ++.+|+++|+
T Consensus       224 ~sed~r~lenLL~ayd~gD~E~~~kvl~sp~~r~MDneya~l~kdl~~P~gn~~~~~~~~~~~~~~  289 (308)
T KOG1585|consen  224 KSEDSRSLENLLTAYDEGDIEEIKKVLSSPTVRNMDNEYAHLNKDLSNPNGNYVFLCFRMYLFCIM  289 (308)
T ss_pred             ChHHHHHHHHHHHHhccCCHHHHHHHHcChHhhhhhHHHHHHhhccCCCCCCccccccchhhhhHH
Confidence            9999999999999999999999999999999999999999999876  777777  9999998886

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-25  Score=176.89  Aligned_cols=207  Identities=24%  Similarity=0.231  Sum_probs=191.1

Q ss_pred             CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHH
Q 026767            1 MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIML   78 (233)
Q Consensus         1 ~~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~   78 (233)
                      +.++..++|+.|..++++|+ .+++.+|+.+.++|+++|...|++..+|+-+..||.+|+ . .++++||.+|++|.++|
T Consensus        66 k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y  144 (288)
T KOG1586|consen   66 KAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY  144 (288)
T ss_pred             hcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999 569999999999999999999999999999999999999 5 89999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHHHHhh-c
Q 026767           79 EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCYNDCS-Q  156 (233)
Q Consensus        79 ~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al-~  156 (233)
                      ........+..|+...+..-..+++|.+|+..|++...-....+....-++-| +..|+||+...|...+...++++. .
T Consensus       145 k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  145 KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999987665555555555555 999999999999999999999998 6


Q ss_pred             CCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc-ccccchHHHHHHhccCC
Q 026767          157 VDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS-AISNLDHVIIKLARKLP  208 (233)
Q Consensus       157 ~~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l~  208 (233)
                      .|.|.+++|+.+|..|.++++.+|.+.+.++++++ .+++||.|.+.|+.+++
T Consensus       225 dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK  277 (288)
T KOG1586|consen  225 DPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIK  277 (288)
T ss_pred             CCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999 99999999998888764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.89  E-value=3.3e-21  Score=161.74  Aligned_cols=202  Identities=19%  Similarity=0.262  Sum_probs=167.3

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCC
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ++.+++..|..+|+.|+..+++++|.++|.+|.+++.+.+++..++.++.+++.+|..+++++|+.+|++|+++|...|+
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~  109 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGR  109 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCc
Confidence            56789999999999999999999999999999999999999999999999999999977999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC---
Q 026767           84 EQMAFDLYRAATNVYIKL-EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA---  159 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~---  159 (233)
                      +..++.++.++|.+|... |++++|+++|++|+++++..+.......++..++.++...|+|.+|.+.|++......   
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~  189 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN  189 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence            999999999999999998 9999999999999999999998888899999999999999999999999999873322   


Q ss_pred             CCCchHHH-HHHHHHHHHhcCCHHHHHHHHhhc--c-cccchHHHHHHhc
Q 026767          160 FLRSDQNR-CATKLISAYTEGDVEEIKRVAQSS--A-ISNLDHVIIKLAR  205 (233)
Q Consensus       160 ~~~~~e~~-~l~~L~~a~~~gd~~~a~~~~~~~--~-~~~ld~~~~~l~~  205 (233)
                      .....-.. .+..++-.+..||+..|...++++  . -++.+..-.+++.
T Consensus       190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~  239 (282)
T PF14938_consen  190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE  239 (282)
T ss_dssp             TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence            11222323 344544444789999999999998  2 2444454344433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.79  E-value=1.6e-19  Score=152.75  Aligned_cols=197  Identities=16%  Similarity=0.119  Sum_probs=154.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC-----------------
Q 026767            2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV-----------------   63 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~-----------------   63 (233)
                      +|+..+.|++--|+|++++.+|.|++|+.|..+-+++.++.||.-..+++|.|+|.||. .|.                 
T Consensus        88 lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev  167 (639)
T KOG1130|consen   88 LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV  167 (639)
T ss_pred             hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH
Confidence            47788888888889999988899999999999999998999998888888888888877 542                 


Q ss_pred             ---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767           64 ---PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        64 ---~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~  140 (233)
                         ++.|.++|+.-+++.+..|+....+.++.++|..|.-+|+|+.|+.+-+.=+++.++.|++-.+-+++.+||.||.-
T Consensus       168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif  247 (639)
T KOG1130|consen  168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF  247 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence               35677778888888888888777778888888888888888888888888888888888887777888888888888


Q ss_pred             hCCHHHHHHHHHHhhcCC--CCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchH
Q 026767          141 ANDFKQAEKCYNDCSQVD--AFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDH  198 (233)
Q Consensus       141 ~gd~~~A~~~~~~al~~~--~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~  198 (233)
                      .|+++.|.++|...+.+.  -..+..|+..+..||.+| -..++..|.+++++.  +.+.|.+
T Consensus       248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D  310 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED  310 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888776333  235667777778888777 566777777776665  4444443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.76  E-value=5e-18  Score=143.75  Aligned_cols=190  Identities=13%  Similarity=0.024  Sum_probs=172.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-
Q 026767            2 LSSPWDAAKHMESAAALAKELHN--------------------WREVADFYRKASELYNECGRSQPASDALAKAARALE-   60 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~--------------------~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-   60 (233)
                      |||.-..++++.|+|++|-..|+                    ++.|+.+|++-+++.++.||...+++++.++|..|+ 
T Consensus       128 LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl  207 (639)
T KOG1130|consen  128 LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL  207 (639)
T ss_pred             HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee
Confidence            67888899999999999986665                    356788888888888999999999999999999999 


Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~  140 (233)
                      .|++++||.+.+.=++|.++.|++...-.++.|+|.+|+-+|+++.|+++|.+.+.+..+++++..++..-+++|.+|.-
T Consensus       208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl  287 (639)
T KOG1130|consen  208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL  287 (639)
T ss_pred             eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence            89999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHhhcCCCC--CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          141 ANDFKQAEKCYNDCSQVDAF--LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       141 ~gd~~~A~~~~~~al~~~~~--~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..++.+|+.++.+-+.|...  ++.+|.+++-.||.+| ..|..++|..+....
T Consensus       288 l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h  341 (639)
T KOG1130|consen  288 LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH  341 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            99999999999998877652  5789999999999999 789999988776665

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.8e-15  Score=119.73  Aligned_cols=187  Identities=19%  Similarity=0.219  Sum_probs=165.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ...++..|..+|++|+..+++..|...|.+|.+++.+.|+.+.+|.++..++.+|..+++.+|+.++++|++||...|+.
T Consensus        30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf  109 (288)
T KOG1586|consen   30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRF  109 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC--C-CC
Q 026767           85 QMAFDLYRAATNVYIK-LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV--D-AF  160 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~--~-~~  160 (233)
                      ..++.-...||++|-. +.++.+|+.+|+++.+.+..........++++..+..-...|+|.+|++.|++....  . ..
T Consensus       110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            9999999999999975 499999999999999999887777788889999999999999999999999997522  1 11


Q ss_pred             CC-chHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          161 LR-SDQNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       161 ~~-~~e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      .. +-...++......+...|.-.+..+++.+
T Consensus       190 LKys~KdyflkAgLChl~~~D~v~a~~ALeky  221 (288)
T KOG1586|consen  190 LKYSAKDYFLKAGLCHLCKADEVNAQRALEKY  221 (288)
T ss_pred             HHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence            12 33445665555555779999999999988

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.72  E-value=2.7e-16  Score=138.92  Aligned_cols=159  Identities=20%  Similarity=0.225  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      .+|+|+|+.++..|+..||.+||.+|+.+.      ..-+.+++|+|.+|. +|..++|..+|++|++.++..      +
T Consensus       321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~------a  388 (966)
T KOG4626|consen  321 DAYNNLANALKDKGSVTEAVDCYNKALRLC------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF------A  388 (966)
T ss_pred             HHHhHHHHHHHhccchHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh------h
Confidence            578999999999999999999999998884      356788999999999 899999999999999999863      4


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCchHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRSDQNR  167 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~~e~~  167 (233)
                      .+.+|+|.+|.++|++++|+.+|++++.+      .+.-+.+|.++|.+|-.+||...|..+|.+++.+ +.|     ++
T Consensus       389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~-----Ae  457 (966)
T KOG4626|consen  389 AAHNNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF-----AE  457 (966)
T ss_pred             hhhhhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-----HH
Confidence            58999999999999999999999999976      5667889999999999999999999999999855 445     77


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          168 CATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       168 ~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +..+|+..| ..|+..+|....+.+
T Consensus       458 AhsNLasi~kDsGni~~AI~sY~~a  482 (966)
T KOG4626|consen  458 AHSNLASIYKDSGNIPEAIQSYRTA  482 (966)
T ss_pred             HHhhHHHHhhccCCcHHHHHHHHHH
Confidence            889999999 799999999888887

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.71  E-value=3.6e-15  Score=132.66  Aligned_cols=188  Identities=15%  Similarity=0.146  Sum_probs=162.1

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNEC--GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~--g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .....+....++|.+|..++++++|+..|++|+.+++..  .+....|.+++|+|..|. .|++++|..++++|++|++.
T Consensus       236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            355677888899999999999999999999999999863  557788999999999999 89999999999999999998


Q ss_pred             cC--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc-cCc-chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           81 DD--KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC-NAT-NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        81 ~g--~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~-~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      .-  .....+..+.+++.++...+++++|..++++++.++... +.. ...+..+.++|.+|+.+|+|.+|++.|++++.
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            32  344455789999999999999999999999999998843 222 36788999999999999999999999999995


Q ss_pred             CCC---C-CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          157 VDA---F-LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       157 ~~~---~-~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +.+   + .+...+.++.+|+.+| +.+....|.....++
T Consensus       396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            532   2 3678899999999999 778888788777777

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.69  E-value=1e-14  Score=129.78  Aligned_cols=189  Identities=15%  Similarity=0.204  Sum_probs=164.5

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNE--CGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLE   79 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~--~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~   79 (233)
                      .+.+.+|..++++|.+|...|+++||..|+++|++++.+  .-+....+..+.+++.++. .+++++|+.+|+++++++.
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~  356 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL  356 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999987  2345567888999999999 8999999999999999999


Q ss_pred             hcC--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC--cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           80 EDD--KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA--TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        80 ~~g--~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ..-  +....+.+..++|.+|..+|+|.+|.++|++++.+.++...  ....+..++.+|..|...+.+.+|...|.++.
T Consensus       357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~  436 (508)
T KOG1840|consen  357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK  436 (508)
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            432  44467789999999999999999999999999999988765  56678889999999999999999999999998


Q ss_pred             cCC-CC--CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          156 QVD-AF--LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       156 ~~~-~~--~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .+. .+  +.+.--..+.+|+.+| ..|+.+.|.+.....
T Consensus       437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            543 22  3456667899999999 799999999887655

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.69  E-value=4.2e-15  Score=117.59  Aligned_cols=178  Identities=15%  Similarity=0.007  Sum_probs=150.8

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      +...++++...+|.-|.+.|++..|..-+++|++.-     | .-..++.-++.+|. .|+++.|-+.|++|+.+.+..|
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-----P-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G  103 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-----P-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG  103 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence            466789999999999999999999999999999874     3 35677888999999 8999999999999999999877


Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-CCCCC
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-VDAFL  161 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~~~~~  161 (233)
                            .++||.|.+++.+|+|++|...|++|+.    .......+.++.|+|.|.++.|+++.|.++|++++. .+.+.
T Consensus       104 ------dVLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         104 ------DVLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             ------chhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence                  5899999999999999999999999994    456677888999999999999999999999999994 45553


Q ss_pred             CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHH
Q 026767          162 RSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIK  202 (233)
Q Consensus       162 ~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~  202 (233)
                           ..+..+.+.+ ..||+..|+.+++.+ .-.....+...
T Consensus       174 -----~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~  211 (250)
T COG3063         174 -----PALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLL  211 (250)
T ss_pred             -----hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHH
Confidence                 3444566655 899999999999988 33334444333

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.68  E-value=1.3e-15  Score=134.72  Aligned_cols=188  Identities=20%  Similarity=0.239  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCchHHHH--------------HHHHHHHHhh
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASEL--------------YNECGRSQPASD--------------ALAKAARALE   60 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g~~~~~a~--------------~l~~lg~~~~   60 (233)
                      ..+|.|+|++|++.+.|++|+.+|.+|+.+              |.+.|..+-+..              +++|+|..+.
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk  331 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK  331 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence            568999999999999999999999999986              233344333332              3444555555


Q ss_pred             -hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           61 -DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        61 -~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                       .|+..+|..+|.+|+.+-..      -+.+++|+|.++.++|.++.|..+|+++++++      +.-+.++.+|+.+|.
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~E~~~~e~A~~ly~~al~v~------p~~aaa~nNLa~i~k  399 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYREQGKIEEATRLYLKALEVF------PEFAAAHNNLASIYK  399 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC------hhhhhhhhhHHHHHH
Confidence             45555566666655555442      24678899999999999999999999998874      344667899999999


Q ss_pred             hhCCHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchH-HHHHHhccC-CCCchh
Q 026767          140 YANDFKQAEKCYNDCSQV-DAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDH-VIIKLARKL-PTGDVS  213 (233)
Q Consensus       140 ~~gd~~~A~~~~~~al~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~-~~~~l~~~l-~~~~~~  213 (233)
                      .+|++++|+.+|.+++.+ +.|     +..+.++|..| +.||...|..++.++ .+..--. .+..|+--- ..|.|+
T Consensus       400 qqgnl~~Ai~~YkealrI~P~f-----Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~  473 (966)
T KOG4626|consen  400 QQGNLDDAIMCYKEALRIKPTF-----ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP  473 (966)
T ss_pred             hcccHHHHHHHHHHHHhcCchH-----HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence            999999999999999965 556     78999999999 899999999999999 5554322 345554433 346665

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=8.7e-13  Score=105.27  Aligned_cols=210  Identities=17%  Similarity=0.110  Sum_probs=169.0

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      .|+.++|..|..+++.|+...+|++|..+..+|++.|+.+.++..+|.++..++.+.. ...+.++..+|++|..+|.+.
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999999999999999999999999999 799999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC-CC
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD-AF  160 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-~~  160 (233)
                      |.+..++.++.+.|.+. +..+.++|+.+|++++.+++..+..+.....+-..+.++.+...+.+|-..+.+-..+. .+
T Consensus       105 GspdtAAmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~  183 (308)
T KOG1585|consen  105 GSPDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC  183 (308)
T ss_pred             CCcchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence            99999999999999875 67899999999999999998876666666667888999999999999988887643221 11


Q ss_pred             C-CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchHHHHHHhccC----CCCchh
Q 026767          161 L-RSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDHVIIKLARKL----PTGDVS  213 (233)
Q Consensus       161 ~-~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~~~~l~~~l----~~~~~~  213 (233)
                      . -...+......+-++ -..|+..+..+.+..  +=.+++++-.+.+.+|    -.|++-
T Consensus       184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E  244 (308)
T KOG1585|consen  184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIE  244 (308)
T ss_pred             hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHH
Confidence            1 122333333333334 578999999998875  5556666544433332    445554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.54  E-value=1.2e-12  Score=104.58  Aligned_cols=168  Identities=18%  Similarity=0.079  Sum_probs=138.8

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      +....+..+.++|.+|...|++++|+.++++++...     + ....++..+|.++. .|++++|+++|++++++.+...
T Consensus        26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~   99 (234)
T TIGR02521        26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-----P-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG   99 (234)
T ss_pred             cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence            445678899999999999999999999999998763     2 23578888999999 8999999999999999865422


Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR  162 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~  162 (233)
                            .++.++|.++...|++++|+.+|++++...    ........+.++|.++...|++.+|...+++++.....  
T Consensus       100 ------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--  167 (234)
T TIGR02521       100 ------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--  167 (234)
T ss_pred             ------HHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--
Confidence                  478899999999999999999999998631    22334556788999999999999999999999854321  


Q ss_pred             chHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                        .......++..+ ..|+.++|...++++
T Consensus       168 --~~~~~~~la~~~~~~~~~~~A~~~~~~~  195 (234)
T TIGR02521       168 --RPESLLELAELYYLRGQYKDARAYLERY  195 (234)
T ss_pred             --ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              234566788877 899999999999988

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.49  E-value=2.3e-12  Score=119.23  Aligned_cols=164  Identities=11%  Similarity=0.017  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ...+.++..+|.++..+|++++|+.+|++++.+.     + ....++.++|.++. .|++++|+.+|++++++.+..   
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-----P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---  398 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-----P-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED---  398 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence            3566788999999999999999999999999874     2 34567889999999 799999999999999884432   


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD  164 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~  164 (233)
                         ..++..+|.++...|++++|+.+|++++.+.      +.....+..+|.++..+|++++|+..|++++...    ..
T Consensus       399 ---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----P~  465 (615)
T TIGR00990       399 ---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF----PE  465 (615)
T ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CC
Confidence               3578999999999999999999999999762      2334568899999999999999999999998542    12


Q ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          165 QNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       165 e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ...+...+|.++ ..|+++.|...++++
T Consensus       466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~A  493 (615)
T TIGR00990       466 APDVYNYYGELLLDQNKFDEAIEKFDTA  493 (615)
T ss_pred             ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            245777889888 799999999999988

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.44  E-value=8.9e-12  Score=115.35  Aligned_cols=132  Identities=14%  Similarity=0.016  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ...++..+|.++...|++++|+.+|++++++.     + .-..++..+|.++. .|++++|+.+|++++++.+..     
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-----  432 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-----S-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-----  432 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-----
Confidence            35677888888888888888888888887762     2 22456777888877 688888888888888775532     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                       ...+.++|.++..+|++++|+.+|++++...      +....++..+|.++..+|++++|++.|++++.+
T Consensus       433 -~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       433 -IFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence             2356677777777777777777777777542      223446677777777777777777777777643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.42  E-value=3.7e-11  Score=95.84  Aligned_cols=163  Identities=17%  Similarity=0.109  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ..++..+|.+|...|++++|+.+|++++.+..      ....++.++|.++. .|++++|+.+|++++......    ..
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~  134 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNP------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP----QP  134 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----cc
Confidence            56788899999999999999999999998742      22357889999999 799999999999999753211    12


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNR  167 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~  167 (233)
                      ...+.++|.++...|++++|..+|++++....      .....+..++.++...|++++|...+++++....    ....
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~  204 (234)
T TIGR02521       135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDP------QRPESLLELAELYYLRGQYKDARAYLERYQQTYN----QTAE  204 (234)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHH
Confidence            34678899999999999999999999987521      2245678999999999999999999999986521    1233


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          168 CATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       168 ~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .+..++..+ ..|+.+.+...++..
T Consensus       205 ~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       205 SLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344556666 689999998876654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.38  E-value=1.2e-10  Score=101.54  Aligned_cols=91  Identities=10%  Similarity=-0.002  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT  170 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~  170 (233)
                      +..+|.++...|++++|+.+|++++..     .+.....++..++.+|...|++++|...+++++....     ......
T Consensus       217 ~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~~~~~~  286 (389)
T PRK11788        217 SILLGDLALAQGDYAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-----GADLLL  286 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CchHHH
Confidence            334444444444444444444444432     1111122344455555555555555555555442210     011224


Q ss_pred             HHHHHH-hcCCHHHHHHHHhhc
Q 026767          171 KLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       171 ~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .++..+ ..|++++|...+++.
T Consensus       287 ~la~~~~~~g~~~~A~~~l~~~  308 (389)
T PRK11788        287 ALAQLLEEQEGPEAAQALLREQ  308 (389)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHH
Confidence            555555 566666666666666

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.36  E-value=1.1e-11  Score=83.71  Aligned_cols=73  Identities=23%  Similarity=0.373  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQ-PASDALAKAARALE-DAVPEDAIQLYTDACIMLE   79 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~-~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~   79 (233)
                      ..+.++.++|.+|..+|++++|+.+|++|+++....|+.. ..+.++.++|.++. .|++++|+++|++|+++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            4556666666666666666666666666666655566543 24666666666666 5666666666666666654

...

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.33  E-value=4.8e-10  Score=107.97  Aligned_cols=183  Identities=11%  Similarity=0.005  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .+......+.++...|++++|..++++++... ..++....+.++..+|.++. .|++++|..++++++.+++..|....
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~  529 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY  529 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence            44455567788888999999999999999863 23444456677888999988 89999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc--chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-CCCc
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT--NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-FLRS  163 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~~~~  163 (233)
                      ...++.++|.++...|++++|..++++++.+....+..  ...+..+..+|.++...|++++|...+++++.... ....
T Consensus       530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  609 (903)
T PRK04841        530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ  609 (903)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence            77899999999999999999999999999998876543  22344567889999999999999999999985433 2333


Q ss_pred             hHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          164 DQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       164 ~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .....+..++.++ ..||.+.|...+.+.
T Consensus       610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a  638 (903)
T PRK04841        610 QQLQCLAMLAKISLARGDLDNARRYLNRL  638 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4455666677777 799999999988877

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.32  E-value=8.4e-11  Score=98.88  Aligned_cols=167  Identities=12%  Similarity=-0.012  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC--C--h
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD--K--E   84 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g--~--~   84 (233)
                      ...-.+|+.+.-++.+++++++|+.|+.+....+|+.-.-+++..+|.+|. ..|+++|+-+..+|.++.+..+  +  .
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            445568888888899999999999999999999999999999999999999 7999999999999999999887  2  2


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC--CCC
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA--FLR  162 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~--~~~  162 (233)
                      .....++..++..+..+|+...|.++++++..+....|++...++++..++.+|...||.+.|...|+++..+..  .++
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr  282 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR  282 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence            223457788888999999999999999999999999999999999999999999999999999999999985433  245


Q ss_pred             chHHHHHHHHHHHH
Q 026767          163 SDQNRCATKLISAY  176 (233)
Q Consensus       163 ~~e~~~l~~L~~a~  176 (233)
                      -++-.++...++..
T Consensus       283 mgqv~al~g~Akc~  296 (518)
T KOG1941|consen  283 MGQVEALDGAAKCL  296 (518)
T ss_pred             HHHHHHHHHHHHHH
Confidence            56667777766644

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.31  E-value=3.4e-10  Score=98.64  Aligned_cols=168  Identities=12%  Similarity=0.047  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ....+..+|.+|...|++++|+.+|++++..     ++ ....++..++.++. .|++++|++.+++++...+..... .
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~  178 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE-----GD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-E  178 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----Cc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-H
Confidence            4568899999999999999999999999875     22 34567889999999 899999999999999988766543 3


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                      ....+..+|.++.+.|++++|+.+|++++....      ....++..+|.++...|++++|.+.|++++....   ..-.
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~  249 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKALAADP------QCVRASILLGDLALAQGDYAAAIEALERVEEQDP---EYLS  249 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh---hhHH
Confidence            345678899999999999999999999987532      2345778999999999999999999999984321   1123


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          167 RCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .++..++.++ ..|+.+.|...+++.
T Consensus       250 ~~~~~l~~~~~~~g~~~~A~~~l~~~  275 (389)
T PRK11788        250 EVLPKLMECYQALGDEAEGLEFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4567788888 799999999999887

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.31  E-value=8.2e-10  Score=89.93  Aligned_cols=179  Identities=13%  Similarity=0.013  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ...+..+.+.|..+...|++++|+..|++++..+..   ......++..+|.++. .|++++|+..|+++++.++.....
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            445678899999999999999999999999887631   1234567889999999 899999999999999999865543


Q ss_pred             HHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHhHccCcc-----------hHHHhHHHHHHHHHhhCCHH
Q 026767           85 QMAFDLYRAATNVYIKL--------EKYADAATFLLRWGLAADKCNATN-----------SQCKAYLSAIIVYLYANDFK  145 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~-----------~~a~~~~~lg~~~~~~gd~~  145 (233)
                         ..++..+|.++...        |++++|+..|++++..........           ........+|.+++..|++.
T Consensus       107 ---~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~  183 (235)
T TIGR03302       107 ---DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV  183 (235)
T ss_pred             ---HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence               24678888888876        899999999999987543321111           01112357899999999999


Q ss_pred             HHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          146 QAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       146 ~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +|+..|++++....- ......++..++.++ ..|+.++|..+.+..
T Consensus       184 ~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       184 AAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999843211 233467788999999 799999999876654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.31  E-value=4.8e-11  Score=80.49  Aligned_cols=74  Identities=16%  Similarity=0.196  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ-MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~-~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      ..+.++.++|.+|. .|++++|+.+|++|+++.+..|+.. ..+.++.++|.++..+|++++|+++++++++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            46788999999999 7999999999999999988888655 45789999999999999999999999999988753

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.30  E-value=3.9e-10  Score=95.36  Aligned_cols=168  Identities=14%  Similarity=0.015  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +...+..|.+.|.+|...|++++|+..|++|+.+.     + .-+.++.++|.++. .|++++|+..|.+++++.+..  
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--  131 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----P-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--  131 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--
Confidence            45668889999999999999999999999999974     3 34678999999999 799999999999999987653  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-C-CCC-
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-V-DAF-  160 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~-~~~-  160 (233)
                          ..++.++|.++...|++++|++.|++++.+....   .  ...+.  ..+....+++++|...|++... . +.. 
T Consensus       132 ----~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~---~--~~~~~--~~l~~~~~~~~~A~~~l~~~~~~~~~~~~  200 (296)
T PRK11189        132 ----NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND---P--YRALW--LYLAESKLDPKQAKENLKQRYEKLDKEQW  200 (296)
T ss_pred             ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---H--HHHHH--HHHHHccCCHHHHHHHHHHHHhhCCcccc
Confidence                2478999999999999999999999999753211   1  11111  1123456778888888866541 1 110 


Q ss_pred             ---------CCc---------------------hHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          161 ---------LRS---------------------DQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       161 ---------~~~---------------------~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                               ...                     ..+.+...||.++ ..||.++|..+++++
T Consensus       201 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A  262 (296)
T PRK11189        201 GWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA  262 (296)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                     011                     1123455678888 799999999999998

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.28  E-value=3e-10  Score=109.29  Aligned_cols=113  Identities=13%  Similarity=0.045  Sum_probs=66.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA  141 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~  141 (233)
                      |++++|+.+|++++++.+.       ...+.++|.++.++|++++|+..|++++.+      .+....++.++|.++...
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~nLG~aL~~~  656 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAALGYALWDS  656 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHC
Confidence            6666666666666655541       135566666666666666666666666654      222334556666666666


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          142 NDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       142 gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      |++++|+..|++++.+.    +....+...++.++ ..||++.|..+++++
T Consensus       657 G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        657 GDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             CCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            66666666666666332    11234555666655 566666666666655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.4e-10  Score=100.13  Aligned_cols=157  Identities=13%  Similarity=0.127  Sum_probs=134.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY   91 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l   91 (233)
                      .-+|+-|...+++++|+.||++|+++-.      +-..+|+-+|.=|. ..+.+.|++.|++|+++-+..      -.++
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALkLNp------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D------yRAW  401 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALKLNP------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD------YRAW  401 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHhcCc------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh------HHHH
Confidence            3467888888999999999999999842      45667888999888 799999999999999998763      2578


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATK  171 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~  171 (233)
                      ..+|..|.-++-+-=|+-+|++|..+      .+.-.+.+..+|.||-++++.++|+++|.+++.....    |+.++..
T Consensus       402 YGLGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt----e~~~l~~  471 (559)
T KOG1155|consen  402 YGLGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT----EGSALVR  471 (559)
T ss_pred             hhhhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc----chHHHHH
Confidence            89999999999999999999999976      3445568899999999999999999999999854422    6789999


Q ss_pred             HHHHH-hcCCHHHHHHHHhhc
Q 026767          172 LISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       172 L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      |+++| +.+|.++|..+.+.+
T Consensus       472 LakLye~l~d~~eAa~~yek~  492 (559)
T KOG1155|consen  472 LAKLYEELKDLNEAAQYYEKY  492 (559)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH
Confidence            99999 789999999888887

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.27  E-value=1.7e-10  Score=111.05  Aligned_cols=146  Identities=8%  Similarity=-0.064  Sum_probs=114.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767           23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL  101 (233)
Q Consensus        23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~  101 (233)
                      |++++|+.+|++|+.+.     |.  +.++.++|.++. .|++++|+.+|++++.+.+...      .++.++|.++...
T Consensus       590 Gr~~eAl~~~~~AL~l~-----P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~------~a~~nLG~aL~~~  656 (987)
T PRK09782        590 GQPELALNDLTRSLNIA-----PS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS------NYQAALGYALWDS  656 (987)
T ss_pred             CCHHHHHHHHHHHHHhC-----CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHC
Confidence            55555555555555442     22  456788899999 7999999999999999976532      5899999999999


Q ss_pred             ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCC
Q 026767          102 EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGD  180 (233)
Q Consensus       102 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd  180 (233)
                      |++++|+.+|++++.+      .+....++.++|.++..+|++++|+.+|++++.+..    .-+.+....++.. ...+
T Consensus       657 G~~eeAi~~l~~AL~l------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P----~~a~i~~~~g~~~~~~~~  726 (987)
T PRK09782        657 GDIAQSREMLERAHKG------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID----NQALITPLTPEQNQQRFN  726 (987)
T ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCchhhhhhhHHHHHHHH
Confidence            9999999999999975      334456889999999999999999999999985431    2245555666666 5677


Q ss_pred             HHHHHHHHhhc
Q 026767          181 VEEIKRVAQSS  191 (233)
Q Consensus       181 ~~~a~~~~~~~  191 (233)
                      +..+.+.+++.
T Consensus       727 ~~~a~~~~~r~  737 (987)
T PRK09782        727 FRRLHEEVGRR  737 (987)
T ss_pred             HHHHHHHHHHH
Confidence            88888888877

>PRK12370 invasion protein regulator; Provisional

Probab=99.22  E-value=5.8e-10  Score=102.06  Aligned_cols=162  Identities=10%  Similarity=0.004  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKE---------LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIML   78 (233)
Q Consensus         9 a~~~~~~g~~~~~---------~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~   78 (233)
                      +.++..+|.+|..         .+++++|+.++++|+++-     + .-+.++..+|.++. .|++++|+.+|++|+++.
T Consensus       295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-----P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~  368 (553)
T PRK12370        295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-----H-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS  368 (553)
T ss_pred             HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4566777776643         244789999999998873     3 23567788899988 799999999999999987


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           79 EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        79 ~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      +..      ..++..+|.++...|++++|+..+++++.+.     +.. ...+...+.+++..|++++|+..+++++...
T Consensus       369 P~~------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        369 PIS------ADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             CCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence            642      2478899999999999999999999999762     111 1233445556777899999999999987332


Q ss_pred             CCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          159 AFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       159 ~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .   .........++.++ ..|+.++|...+++.
T Consensus       437 ~---p~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        437 L---QDNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             c---ccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            1   11233556677777 789999999998876

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.22  E-value=4.6e-09  Score=101.23  Aligned_cols=151  Identities=11%  Similarity=0.057  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      .+..+.+...+|.++...|++++|..++++++..++..|+....+.++.++|.++. .|++++|..++++++++.+..+.
T Consensus       487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~  566 (903)
T PRK04841        487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL  566 (903)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence            34456677888999999999999999999999999999999999999999999999 89999999999999999998763


Q ss_pred             h--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           84 E--QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        84 ~--~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      .  .....++..+|.++...|++++|...+++++.+....+ ......++..++.++...|++.+|...++++..
T Consensus       567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2  22334567889999999999999999999999887655 334556778899999999999999999988863

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.22  E-value=7.1e-10  Score=103.37  Aligned_cols=156  Identities=9%  Similarity=0.011  Sum_probs=116.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHH----HHHHHHHHHHHHHhcCChHHHH
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPED----AIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~----A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      .++.++...|++++|+..|++++.+.     + ....++.++|.++. .|++++    |+.+|++++++.+..      .
T Consensus       217 ~l~~~l~~~g~~~eA~~~~~~al~~~-----p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~------~  284 (656)
T PRK15174        217 LAVDTLCAVGKYQEAIQTGESALARG-----L-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN------V  284 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC------H
Confidence            34566667778888888888777652     1 23567788898888 788875    789999998876642      3


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC  168 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~  168 (233)
                      .++.++|.++...|++++|+.++++++.+.      +....++..+|.++...|++++|+..|++++.....    ....
T Consensus       285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~----~~~~  354 (656)
T PRK15174        285 RIVTLYADALIRTGQNEKAIPLLQQSLATH------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV----TSKW  354 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----chHH
Confidence            578889999999999999999999988752      223456778899999999999999999988743211    1223


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          169 ATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ...++.++ ..|+.++|...++++
T Consensus       355 ~~~~a~al~~~G~~deA~~~l~~a  378 (656)
T PRK15174        355 NRYAAAALLQAGKTSEAESVFEHY  378 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34456666 789999999988887

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=2.9e-10  Score=101.70  Aligned_cols=161  Identities=8%  Similarity=-0.009  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------H---------------------cCCchHHHHHHHHHHHHhh
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYN-------E---------------------CGRSQPASDALAKAARALE   60 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~-------~---------------------~g~~~~~a~~l~~lg~~~~   60 (233)
                      -++|.-+|++|.-+++++.|+.+|++|+.+-.       -                     .+--..--++|..+|.+|.
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            46789999999999999999999999998621       1                     1111222345666677777


Q ss_pred             -hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           61 -DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        61 -~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                       ++.++.|.-+|++|+++-+..      ..++..+|.++.++|+.++|+.+|++|+.+     ++. ...+.+.-+.++.
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~k-n~l~~~~~~~il~  568 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPK-NPLCKYHRASILF  568 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCC-CchhHHHHHHHHH
Confidence             677777777777777766542      135566777777777777777777777754     111 1223456666777


Q ss_pred             hhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHH
Q 026767          140 YANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIK  185 (233)
Q Consensus       140 ~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~  185 (233)
                      .++++++|+..+++...+.    ..|.-++..||..| +.|....|.
T Consensus       569 ~~~~~~eal~~LEeLk~~v----P~es~v~~llgki~k~~~~~~~Al  611 (638)
T KOG1126|consen  569 SLGRYVEALQELEELKELV----PQESSVFALLGKIYKRLGNTDLAL  611 (638)
T ss_pred             hhcchHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHccchHHH
Confidence            7777777777777665433    35666777777777 556555443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.19  E-value=1.3e-09  Score=107.55  Aligned_cols=173  Identities=12%  Similarity=0.035  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchH--------HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQP--------ASDALAKAARALE-DAVPEDAIQLYTDACIMLE   79 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~--------~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~   79 (233)
                      +.++..+|.+|...|++++|+.+|++++.+.........        ....+...|.++. .|++++|+.+|++++++.+
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P  382 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN  382 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            456677777777788888888888887776543322110        1123344566666 6888888888888887754


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc------------ch---------------------
Q 026767           80 EDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT------------NS---------------------  126 (233)
Q Consensus        80 ~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~---------------------  126 (233)
                      ..      ..++..+|.++...|++++|+++|++++.+.......            ..                     
T Consensus       383 ~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~  456 (1157)
T PRK11447        383 TD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE  456 (1157)
T ss_pred             CC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence            31      2467778888888888888888888887642211000            00                     


Q ss_pred             ---HHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          127 ---QCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       127 ---~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                         ....+..+|.++...|++.+|+..|++++....    ....+...++.++ ..|++++|...+++.
T Consensus       457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P----~~~~~~~~LA~~~~~~G~~~~A~~~l~~a  521 (1157)
T PRK11447        457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP----GSVWLTYRLAQDLRQAGQRSQADALMRRL  521 (1157)
T ss_pred             HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               011233456677778888888888888874421    1234566777777 788888888888877

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.19  E-value=1.3e-09  Score=107.53  Aligned_cols=162  Identities=15%  Similarity=0.129  Sum_probs=126.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH-H-----
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ-M-----   86 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~-~-----   86 (233)
                      ..|.++...|++++|+.+|++++.+.-      .-..++..+|.++. .|++++|+.+|++++++.+...... .     
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~  347 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANP------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK  347 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence            347888889999999999999999742      23577899999999 8999999999999999887654321 0     


Q ss_pred             --HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767           87 --AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD  164 (233)
Q Consensus        87 --~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~  164 (233)
                        ....+...|.++...|++++|+.+|++++.+.      +....++..+|.++...|++++|+++|++++.+...    
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~----  417 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG----  417 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----
Confidence              11234567889999999999999999999762      233457889999999999999999999999855321    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          165 QNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       165 e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      ...++..|+..+..++.++|...++..
T Consensus       418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l  444 (1157)
T PRK11447        418 NTNAVRGLANLYRQQSPEKALAFIASL  444 (1157)
T ss_pred             CHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            134567777777666778887766543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.19  E-value=3e-09  Score=99.24  Aligned_cols=119  Identities=12%  Similarity=-0.040  Sum_probs=84.2

Q ss_pred             HHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHHhHccCcchHHHhH
Q 026767           57 RALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYAD----AATFLLRWGLAADKCNATNSQCKAY  131 (233)
Q Consensus        57 ~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~a~~~  131 (233)
                      .++. .|++++|+..|++++++.+..      ..++.++|.++...|++++    |+..|++++.+.      +....++
T Consensus       220 ~~l~~~g~~~eA~~~~~~al~~~p~~------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~------P~~~~a~  287 (656)
T PRK15174        220 DTLCAVGKYQEAIQTGESALARGLDG------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN------SDNVRIV  287 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC------CCCHHHH
Confidence            3344 466666666666666543221      2467778888888888885    788888888652      2345678


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          132 LSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       132 ~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .++|.++..+|++++|+..+++++....    ....+...++.++ ..|++++|...+++.
T Consensus       288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P----~~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        288 TLYADALIRTGQNEKAIPLLQQSLATHP----DLPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            8889999999999999999999885421    1234566678888 789999998888877

>PRK12370 invasion protein regulator; Provisional

Probab=99.18  E-value=2.2e-09  Score=98.34  Aligned_cols=131  Identities=9%  Similarity=-0.039  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +.++..+|.++...|++++|+.+|++|+.+.     | .-+.++..+|.++. .|++++|+.+|++|+++.+...     
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-----  406 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS-----P-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-----  406 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence            4567788999999999999999999999883     3 23557889999999 7999999999999999977532     


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                       .+...++.++...|++++|+..+++++...     ++.....+..+|.++..+|++++|...+++...
T Consensus       407 -~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-----~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~  469 (553)
T PRK12370        407 -AAGITKLWITYYHTGIDDAIRLGDELRSQH-----LQDNPILLSMQVMFLSLKGKHELARKLTKEIST  469 (553)
T ss_pred             -hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-----cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence             123345556777999999999999987531     223344678999999999999999999988753

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=1.9e-10  Score=102.87  Aligned_cols=174  Identities=9%  Similarity=0.061  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------HcC-------------CchHHHHHHHHHHHHhh
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYN---------------ECG-------------RSQPASDALAKAARALE   60 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~---------------~~g-------------~~~~~a~~l~~lg~~~~   60 (233)
                      ..++.++|..|.++++|++|..+|+.+-++.-               -..             .-...-.+|--+|.+|.
T Consensus       353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS  432 (638)
T KOG1126|consen  353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS  432 (638)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence            36788999999999999999999998877521               000             00112245667799999


Q ss_pred             -hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           61 -DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        61 -~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                       +++++.||++|+||+.+-+..      +.++.-+|.=++.+.+|++|..+|+.|+.+      .....++++.+|.||+
T Consensus       433 LQkdh~~Aik~f~RAiQldp~f------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~------~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  433 LQKDHDTAIKCFKRAIQLDPRF------AYAYTLLGHESIATEEFDKAMKSFRKALGV------DPRHYNAWYGLGTVYL  500 (638)
T ss_pred             hhhHHHHHHHHHHHhhccCCcc------chhhhhcCChhhhhHHHHhHHHHHHhhhcC------CchhhHHHHhhhhhee
Confidence             899999999999999886642      357788888889999999999999999854      3445678999999999


Q ss_pred             hhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchH
Q 026767          140 YANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDH  198 (233)
Q Consensus       140 ~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~  198 (233)
                      +++.++.|+-+|++|+.+.    .....++..+|..+ +.|+.++|...++++ .++..++
T Consensus       501 Kqek~e~Ae~~fqkA~~IN----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEIN----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             ccchhhHHHHHHHhhhcCC----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence            9999999999999998764    23355777788777 789999999999999 6666655

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.16  E-value=3.2e-09  Score=82.26  Aligned_cols=115  Identities=12%  Similarity=-0.076  Sum_probs=86.4

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      +....+..+.++|.++...|++++|+.+|++|+.+.   .++...+.++.++|.++. .|++++|+.+|++|+.+.+..+
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~  106 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP  106 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            345567888999999988999999999999998874   234445678899999999 7999999999999998855443


Q ss_pred             C-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           83 K-EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        83 ~-~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      . ....+.++.++|.++..+|++..|+..+.+++..+++.
T Consensus       107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033        107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            1 22234455555666668888888888888888776553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=4.8e-09  Score=90.78  Aligned_cols=182  Identities=18%  Similarity=0.144  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      -..++.-+|.=|.++++...|++.|++|+++-.      .--++|..+|..|. .+.+.=|+-+|++|+++-+...    
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs----  432 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP------RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS----  432 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch----
Confidence            356778888889999999999999999999852      34567999999999 8999999999999999877543    


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC---CCCCc
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD---AFLRS  163 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~---~~~~~  163 (233)
                        ..+..+|.+|.++++.++|+.+|.+++..    ++.  ++.++..||.+|-.++|+.+|..+|++++...   +....
T Consensus       433 --Rlw~aLG~CY~kl~~~~eAiKCykrai~~----~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~  504 (559)
T KOG1155|consen  433 --RLWVALGECYEKLNRLEEAIKCYKRAILL----GDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD  504 (559)
T ss_pred             --HHHHHHHHHHHHhccHHHHHHHHHHHHhc----ccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence              46778999999999999999999999965    343  56789999999999999999999999998532   22222


Q ss_pred             hHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHhccC
Q 026767          164 DQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLARKL  207 (233)
Q Consensus       164 ~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l  207 (233)
                      .-..+..-|+.-+ ..+|.++|..++... .....-.+...|.+.+
T Consensus       505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei  550 (559)
T KOG1155|consen  505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI  550 (559)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            2333444477766 789999999988887 5544444555555543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.15  E-value=3.9e-09  Score=88.99  Aligned_cols=147  Identities=15%  Similarity=0.024  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +-++..++..++.+|+...|.++.++|.++..+.||....++++.-+|.||. .|+.+.|-.-|++|..+....|++.+.
T Consensus       206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq  285 (518)
T KOG1941|consen  206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ  285 (518)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH
Confidence            4456778899999999999999999999999999999999999999999999 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccHHH-----HHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           88 FDLYRAATNVYIKLEKYAD-----AATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ..++...+..+....-.++     |+++-++.+++..++|.....-+.+..++.+|..+|+-++=..++.++.
T Consensus       286 v~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~  358 (518)
T KOG1941|consen  286 VEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH  358 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            9999999999988877777     9999999999999999999999999999999999998888777777664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.14  E-value=1.5e-09  Score=86.35  Aligned_cols=151  Identities=11%  Similarity=-0.027  Sum_probs=126.5

Q ss_pred             CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           43 GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        43 g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      -+...++.+...+|.-|. .|++..|...+++|+++-+..      ..++..++.+|...|+.+.|-+.|++|+.+    
T Consensus        29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----   98 (250)
T COG3063          29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESYRKALSL----   98 (250)
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhc----
Confidence            346678889999999999 799999999999999987753      357778999999999999999999999976    


Q ss_pred             cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchH
Q 026767          122 NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDH  198 (233)
Q Consensus       122 ~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~  198 (233)
                        .+..+.+++|-|.-.+.+|++++|...|++|+..|.+.  .....+.++|-+. ..|+.+.++..++++  +-...+.
T Consensus        99 --~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~--~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~  174 (250)
T COG3063          99 --APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP  174 (250)
T ss_pred             --CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC--CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence              45566789999999999999999999999999888752  2244566777644 899999999999999  6666677


Q ss_pred             HHHHHhccC
Q 026767          199 VIIKLARKL  207 (233)
Q Consensus       199 ~~~~l~~~l  207 (233)
                      ....+++..
T Consensus       175 ~~l~~a~~~  183 (250)
T COG3063         175 ALLELARLH  183 (250)
T ss_pred             HHHHHHHHH
Confidence            777777654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=1.2e-08  Score=84.82  Aligned_cols=183  Identities=13%  Similarity=0.071  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHH-------------------------------HHHHHHHHHHcCC-chHHHHHHH
Q 026767            6 WDAAKHMESAAALAKELHNWREVADF-------------------------------YRKASELYNECGR-SQPASDALA   53 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~-------------------------------~~~A~~l~~~~g~-~~~~a~~l~   53 (233)
                      .+.-++...+|++|++.|..|.|+..                               |++|-++|...-| +.-+-.++.
T Consensus        66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Alq  145 (389)
T COG2956          66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQ  145 (389)
T ss_pred             chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence            34456777899999999999998875                               4455555555544 444555666


Q ss_pred             HHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHH
Q 026767           54 KAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYL  132 (233)
Q Consensus        54 ~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~  132 (233)
                      .+-.+|+ ..+.++||+.-++-..+-.+. .....+..+..++..+....+.++|+..+.+|+..      .+.-.++-.
T Consensus       146 qLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi  218 (389)
T COG2956         146 QLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASI  218 (389)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------Cccceehhh
Confidence            6677777 577777777666555444433 34456678888888888889999999999999864      223345567


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchHH
Q 026767          133 SAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDHV  199 (233)
Q Consensus       133 ~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~  199 (233)
                      .+|.+++..|+|.+|.+.++.++ +.+.+    -.+++..|..+| ..|+++.+..++.++  .+..++.+
T Consensus       219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~  285 (389)
T COG2956         219 ILGRVELAKGDYQKAVEALERVLEQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE  285 (389)
T ss_pred             hhhHHHHhccchHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence            89999999999999999999988 55544    467999999999 799999999999999  55555554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.11  E-value=4e-09  Score=99.84  Aligned_cols=160  Identities=16%  Similarity=0.111  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ....+..+|.++...|++++|+.+|++++......       .++.+++.++. .|++++|++.++++++..+..     
T Consensus       702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-----  769 (899)
T TIGR02917       702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-----  769 (899)
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----
Confidence            35667888999999999999999999998764211       44566777777 677777777777777654431     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                       ..++..+|.++...|++++|+.+|++++...      +....++.+++.++...|+ .+|+..+++++....-    ..
T Consensus       770 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~----~~  837 (899)
T TIGR02917       770 -AVLRTALAELYLAQKDYDKAIKHYRTVVKKA------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN----IP  837 (899)
T ss_pred             -HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC----Cc
Confidence             2466777777777777777777777777542      1234456677777777777 6677777777643211    12


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          167 RCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .++..++.++ ..|+++.|...++++
T Consensus       838 ~~~~~~~~~~~~~g~~~~A~~~~~~a  863 (899)
T TIGR02917       838 AILDTLGWLLVEKGEADRALPLLRKA  863 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445566665 677777777777777

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=1.2e-08  Score=88.34  Aligned_cols=142  Identities=19%  Similarity=0.227  Sum_probs=113.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHH-----
Q 026767            2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDAC-----   75 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al-----   75 (233)
                      |++.-++.+++.|+|..+..+|+.++|+++|-+-..+.+      .-+.++..++.+|+ ..++.+||++|.++.     
T Consensus       517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl~qianiye~led~aqaie~~~q~~slip~  590 (840)
T KOG2003|consen  517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN  590 (840)
T ss_pred             HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence            355667888999999999999999999999998888764      46789999999999 899999999998775     


Q ss_pred             ---------HHHHhcCChHHHHHHH--------------HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHH
Q 026767           76 ---------IMLEEDDKEQMAFDLY--------------RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYL  132 (233)
Q Consensus        76 ---------~~~~~~g~~~~~~~~l--------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~  132 (233)
                               ++|.+.|+..++..|+              ..+|..|+...=+++|+.||+++.-+      .+.+.+...
T Consensus       591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali------qp~~~kwql  664 (840)
T KOG2003|consen  591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI------QPNQSKWQL  664 (840)
T ss_pred             CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc------CccHHHHHH
Confidence                     4566667666665543              34566677777777888888877643      455666668


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHhh
Q 026767          133 SAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       133 ~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      .++.|+.+.|+|.+|...|....
T Consensus       665 miasc~rrsgnyqka~d~yk~~h  687 (840)
T KOG2003|consen  665 MIASCFRRSGNYQKAFDLYKDIH  687 (840)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHH
Confidence            89999999999999999998865

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.10  E-value=9.3e-09  Score=97.36  Aligned_cols=137  Identities=17%  Similarity=0.084  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcC---------------CchHHHHHHHHHHHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASEL--------------YNECG---------------RSQPASDALAKAARA   58 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g---------------~~~~~a~~l~~lg~~   58 (233)
                      .+.++..+|.+|...|++++|+..+++++..              +...|               +....+.++..+|.+
T Consensus        55 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  134 (899)
T TIGR02917        55 DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA  134 (899)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHH
Confidence            3456777899999999999999998888763              11222               333445566677888


Q ss_pred             hh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767           59 LE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV  137 (233)
Q Consensus        59 ~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~  137 (233)
                      +. .|++++|+.+|+++++..+..      ..++..++.++...|++++|+..+++++...      +....++..+|.+
T Consensus       135 ~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~  202 (899)
T TIGR02917       135 YLGLGQLELAQKSYEQALAIDPRS------LYAKLGLAQLALAENRFDEARALIDEVLTAD------PGNVDALLLKGDL  202 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCC------hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHH
Confidence            88 789999999999888765532      2356778888888888888888888877541      1223456777778


Q ss_pred             HHhhCCHHHHHHHHHHhhc
Q 026767          138 YLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus       138 ~~~~gd~~~A~~~~~~al~  156 (233)
                      +...|++++|...|++++.
T Consensus       203 ~~~~g~~~~A~~~~~~a~~  221 (899)
T TIGR02917       203 LLSLGNIELALAAYRKAIA  221 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHh
Confidence            8888888888888887763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.09  E-value=1.8e-09  Score=90.42  Aligned_cols=162  Identities=19%  Similarity=0.210  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      ..+..+..++...++++++...++++..    ..........+...|.++. .|++++|++.|++|+++.+...      
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~------  180 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP------  180 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H------
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------
Confidence            4455666777788888888888888663    3334466788889999999 7999999999999999988632      


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC  168 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~  168 (233)
                      .++..++.+++..|+++++.+.+.........  +    ...+..+|.++..+|++++|+..|++++...    +....+
T Consensus       181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~--~----~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~----p~d~~~  250 (280)
T PF13429_consen  181 DARNALAWLLIDMGDYDEAREALKRLLKAAPD--D----PDLWDALAAAYLQLGRYEEALEYLEKALKLN----PDDPLW  250 (280)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT--S----CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS----TT-HHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC--H----HHHHHHHHHHhcccccccccccccccccccc----cccccc
Confidence            46778999999999999988888776654311  1    1234678999999999999999999987432    234678


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          169 ATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +..+++++ ..|+.+.|....+++
T Consensus       251 ~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  251 LLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccc
Confidence            88999999 799999998887766

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.09  E-value=1.2e-08  Score=83.14  Aligned_cols=142  Identities=12%  Similarity=-0.029  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h--------CCHHHHHHHHHHHHHHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D--------AVPEDAIQLYTDACIML   78 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~--------g~~~~A~~~~~~Al~~~   78 (233)
                      ...++..+|.+|...|++++|+..|++++..+....   ....++..+|.++. .        |++++|++.|++++..+
T Consensus        69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  145 (235)
T TIGR03302        69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY  145 (235)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence            346788899999999999999999999998875332   33456777888776 4        78999999999999988


Q ss_pred             HhcCChHHHH-----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHH
Q 026767           79 EEDDKEQMAF-----------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQA  147 (233)
Q Consensus        79 ~~~g~~~~~~-----------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A  147 (233)
                      +.......+-           .....+|.++...|++.+|+..|++++..+.   +.+....+++.+|.++..+|++.+|
T Consensus       146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~~~A  222 (235)
T TIGR03302       146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLKDLA  222 (235)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCHHHH
Confidence            8765322111           1124678999999999999999999997643   2344567899999999999999999


Q ss_pred             HHHHHHhh
Q 026767          148 EKCYNDCS  155 (233)
Q Consensus       148 ~~~~~~al  155 (233)
                      ..+++...
T Consensus       223 ~~~~~~l~  230 (235)
T TIGR03302       223 QDAAAVLG  230 (235)
T ss_pred             HHHHHHHH
Confidence            99888754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.08  E-value=3.1e-09  Score=80.37  Aligned_cols=107  Identities=10%  Similarity=0.068  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Q 026767           30 DFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAA  108 (233)
Q Consensus        30 ~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~  108 (233)
                      .++++|+.+--.         .+.+.|.++. .|++++|+.+|++++.+-+..      ..++.++|.++..+|++++|+
T Consensus        14 ~~~~~al~~~p~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~   78 (144)
T PRK15359         14 DILKQLLSVDPE---------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAI   78 (144)
T ss_pred             HHHHHHHHcCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHH
Confidence            566777666422         1445677877 799999999999988775532      357889999999999999999


Q ss_pred             HHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          109 TFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       109 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ..|++++.+      .+..+.+++++|.++..+|++.+|+..|++++.+
T Consensus        79 ~~y~~Al~l------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         79 NFYGHALML------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             HHHHHHHhc------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999865      3344567899999999999999999999999854

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=9.4e-09  Score=90.77  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=57.5

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK  129 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~  129 (233)
                      ++.+|.+.. .+.+.+|+.+|+.+++..+..+.... -.-+++|||.++.++++|++|+.+|++++.+.      +.-+.
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~------~k~~~  490 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS------PKDAS  490 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC------CCchh
Confidence            444455555 45666666666666655555543321 23445666666666666666666666666542      12244


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      ++.++|.+|..+|+++.|.++|.+++.+.
T Consensus       491 ~~asig~iy~llgnld~Aid~fhKaL~l~  519 (611)
T KOG1173|consen  491 THASIGYIYHLLGNLDKAIDHFHKALALK  519 (611)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence            55666666666666666666666666444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.06  E-value=2.2e-09  Score=81.25  Aligned_cols=111  Identities=6%  Similarity=-0.158  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      .+.+.|.++...|++++|+.+|++++.+-     + .-..++.++|.++. .|++++|+.+|.+|+++.+..      ..
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~------~~   93 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-----P-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH------PE   93 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------cH
Confidence            37778888889999999999999987662     2 35677888999888 799999999999999875543      25


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                      .+.++|.++..+|++++|+..|++++.+.      +.....+.+.+.+..
T Consensus        94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~------p~~~~~~~~~~~~~~  137 (144)
T PRK15359         94 PVYQTGVCLKMMGEPGLAREAFQTAIKMS------YADASWSEIRQNAQI  137 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHH
Confidence            78889999999999999999999988752      222334455555543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=1.3e-09  Score=90.87  Aligned_cols=161  Identities=15%  Similarity=0.194  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL   90 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~   90 (233)
                      +..++.++..+++.++|+++|..++++.-      .-..+...+|.-|. .++++-|+.+|++.+.+-...+      +.
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~------~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp------eL  360 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHP------INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP------EL  360 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCC------ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh------HH
Confidence            33444444445555555555555444321      11112223444555 6888888888888887755443      68


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT  170 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~  170 (233)
                      +.|||.++..-++++-++..|++++.....   +...+.+++|||.|....||+.-|.++|+-++...    ...++.++
T Consensus       361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d----~~h~ealn  433 (478)
T KOG1129|consen  361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD----AQHGEALN  433 (478)
T ss_pred             HhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhccC----cchHHHHH
Confidence            999999999999999999999999987653   34457789999999999999999999999988322    23477889


Q ss_pred             HHHHHH-hcCCHHHHHHHHhhc
Q 026767          171 KLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       171 ~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +|+-.- +.||.+.|+..++.+
T Consensus       434 NLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  434 NLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             hHHHHHhhcCchHHHHHHHHHh
Confidence            998744 899999999999887

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4.7e-09  Score=92.61  Aligned_cols=179  Identities=11%  Similarity=0.039  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +.+|...|.+|.-.+..++|+.+|..|.+++...--|.      .=+|.-|. .+.+.-|-++|.+|+.+++...     
T Consensus       346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~------LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp-----  414 (611)
T KOG1173|consen  346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS------LYLGMEYMRTNNLKLAEKFFKQALAIAPSDP-----  414 (611)
T ss_pred             cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH------HHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-----
Confidence            46788899999999999999999999999997666653      44788888 6999999999999999999754     


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch-HHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCchH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS-QCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRSDQ  165 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~~e  165 (233)
                       -+++.+|.+....+.|.+|..+|+.++........... ....+.+||.++.+.+.+.+|+.+|++++.. +.+     
T Consensus       415 -lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-----  488 (611)
T KOG1173|consen  415 -LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-----  488 (611)
T ss_pred             -hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-----
Confidence             58899999999999999999999999988877665543 3456799999999999999999999999844 323     


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHh
Q 026767          166 NRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLA  204 (233)
Q Consensus       166 ~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~  204 (233)
                      ......+|-.| -.|+.+.|.+++..+ .+++-+.-...|.
T Consensus       489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL  529 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence            45566777777 689999999999999 4555443333333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.03  E-value=1.1e-08  Score=95.28  Aligned_cols=137  Identities=9%  Similarity=-0.054  Sum_probs=105.6

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      ++..-+.++.++|.+....|++++|..+++.++++.     | .-..+..+.+.++. .+++++|+..+++++..-+.. 
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-  153 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----P-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-  153 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----C-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-
Confidence            344557788888888888888888888888888875     3 45566777788877 788888888888888776643 


Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                           +..+..+|.++.++|+|++|+++|++++.      ..+....++.+.|.++..+|+.++|...|++++...
T Consensus       154 -----~~~~~~~a~~l~~~g~~~~A~~~y~~~~~------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        154 -----AREILLEAKSWDEIGQSEQADACFERLSR------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             -----HHHHHHHHHHHHHhcchHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                 35778888888888888888888888885      123445678888888888888888888888887544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.03  E-value=1.9e-08  Score=85.02  Aligned_cols=151  Identities=11%  Similarity=-0.045  Sum_probs=115.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767           23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL  101 (233)
Q Consensus        23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~  101 (233)
                      +..+.++..+.+.+...  .-++...+..+.+.|.++. .|++++|+..|++|+++.+..      ..+++++|.++...
T Consensus        40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~  111 (296)
T PRK11189         40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQA  111 (296)
T ss_pred             hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC
Confidence            44567777777766432  2445677889999999999 799999999999999986642      36899999999999


Q ss_pred             ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHhcCCH
Q 026767          102 EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDV  181 (233)
Q Consensus       102 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~~gd~  181 (233)
                      |++++|+..|++++++      .+....++.++|.++...|++++|.+.|++++.....+.  .......+  ....++.
T Consensus       112 g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~--~~~~~~~l--~~~~~~~  181 (296)
T PRK11189        112 GNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP--YRALWLYL--AESKLDP  181 (296)
T ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH--HHccCCH
Confidence            9999999999999976      233456789999999999999999999999985432211  11111111  1246788


Q ss_pred             HHHHHHHhhc
Q 026767          182 EEIKRVAQSS  191 (233)
Q Consensus       182 ~~a~~~~~~~  191 (233)
                      ++|...+++.
T Consensus       182 ~~A~~~l~~~  191 (296)
T PRK11189        182 KQAKENLKQR  191 (296)
T ss_pred             HHHHHHHHHH
Confidence            8888888665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.02  E-value=7.3e-08  Score=72.84  Aligned_cols=135  Identities=14%  Similarity=0.060  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      .++..|..+-..+. .+++..+...+++-..   ..++..-+..+...+|.++. .|++++|+..|++++.-.   .+..
T Consensus        10 ~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~   82 (145)
T PF09976_consen   10 QASALYEQALQALQ-AGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPE   82 (145)
T ss_pred             HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHH
Confidence            34555666655554 7788877665544433   34555566777888888888 799999999999988844   3334


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ....+..+++.+++..|+|++|+..++..       ......+.++...|.++...|++++|+..|++++
T Consensus        83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   83 LKPLARLRLARILLQQGQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            44557788999999999999999988652       2334455677889999999999999999998874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.01  E-value=2.9e-08  Score=79.10  Aligned_cols=97  Identities=14%  Similarity=0.131  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHhcc--HHHHHHHHHHHHHHHhHccCc
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVY-IKLEK--YADAATFLLRWGLAADKCNAT  124 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~  124 (233)
                      +..|..+|.+|. .|++++|+..|++|+.+....      ..++.++|.++ ...|+  +++|...+++++..      .
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~------d  140 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYYQAGQHMTPQTREMIDKALAL------D  140 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh------C
Confidence            456777788887 688888888888888777643      24667777764 56666  47888888888764      2


Q ss_pred             chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      +....+++.+|.++...|++++|+.+|++++..
T Consensus       141 P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        141 ANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            334456788888888888888888888888744

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.96  E-value=3.5e-08  Score=76.74  Aligned_cols=107  Identities=13%  Similarity=0.072  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      .....+..+.+.|..+...|++++|+.+|++++.+...   +...+.++.++|.++. .|++++|+.+|++++.+.+.. 
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-  105 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-  105 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-
Confidence            45567788999999999999999999999999987543   2235678999999999 799999999999999986543 


Q ss_pred             ChHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHh
Q 026767           83 KEQMAFDLYRAATNVYIKLEK-------YADAATFLLRWGLAAD  119 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~-------~~~A~~~~~~al~~~~  119 (233)
                           ...+..+|.++...|+       +++|+..|++++..++
T Consensus       106 -----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~  144 (172)
T PRK02603        106 -----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWK  144 (172)
T ss_pred             -----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence                 2345566777766555       5555555555554443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.94  E-value=7.4e-08  Score=89.80  Aligned_cols=154  Identities=10%  Similarity=0.070  Sum_probs=123.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 026767           18 LAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATN   96 (233)
Q Consensus        18 ~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~   96 (233)
                      +....+....+.+..-+++.+.+   ++..-+.++.++|.+.. .|++++|..+++.++++.++.      ..+..+++.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~------~~a~~~~a~  128 (694)
T PRK15179         58 VLERHAAVHKPAAALPELLDYVR---RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS------SEAFILMLR  128 (694)
T ss_pred             HHHHhhhhcchHhhHHHHHHHHH---hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc------HHHHHHHHH
Confidence            33334444444444444444443   23344778999999999 799999999999999999863      358899999


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-CCCCCCchHHHHHHHHHHH
Q 026767           97 VYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-VDAFLRSDQNRCATKLISA  175 (233)
Q Consensus        97 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~~~~~~~~e~~~l~~L~~a  175 (233)
                      ++.+.+++++|+..+++++..      .+..+.+++.+|.+..+.|+|++|...|++++. .+     ....++..++.+
T Consensus       129 ~L~~~~~~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-----~~~~~~~~~a~~  197 (694)
T PRK15179        129 GVKRQQGIEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-----EFENGYVGWAQS  197 (694)
T ss_pred             HHHHhccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CcHHHHHHHHHH
Confidence            999999999999999999964      445567889999999999999999999999984 33     346788899998


Q ss_pred             H-hcCCHHHHHHHHhhc
Q 026767          176 Y-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       176 ~-~~gd~~~a~~~~~~~  191 (233)
                      + ..|+.++|..+++.+
T Consensus       198 l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        198 LTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            8 799999999999988

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.90  E-value=4.6e-08  Score=75.73  Aligned_cols=110  Identities=8%  Similarity=-0.044  Sum_probs=82.5

Q ss_pred             CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           43 GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        43 g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      ......+.++.++|.++. .|++++|+.+|++|+.+...   ....+.++.++|.++...|++++|+.+|++++.+....
T Consensus        29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~  105 (168)
T CHL00033         29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL  105 (168)
T ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            344568899999999999 79999999999999998643   22234589999999999999999999999999763222


Q ss_pred             cC-cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          122 NA-TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       122 ~~-~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      .. ....+.++..+|..+..+|++..|+..+.+++
T Consensus       106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033        106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            11 11223344444444448899998888887775

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=6.4e-08  Score=83.96  Aligned_cols=173  Identities=16%  Similarity=0.132  Sum_probs=114.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY   91 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l   91 (233)
                      .|-|++-...|++++|.+.|.+|+.      +-.....++.|+|..++ .|+.++|+.+|.+-..+...      -+.++
T Consensus       494 ~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl  561 (840)
T KOG2003|consen  494 TNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVL  561 (840)
T ss_pred             hcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHH
Confidence            3334444456777777777777753      33456778889999999 79999999999888887774      35788


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATK  171 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~  171 (233)
                      ..++.+|-.+.+..+|+++|-++..+.      +.-..++..++.+|-+.||-.+|..++-.+...+-    -.-++.++
T Consensus       562 ~qianiye~led~aqaie~~~q~~sli------p~dp~ilskl~dlydqegdksqafq~~ydsyryfp----~nie~iew  631 (840)
T KOG2003|consen  562 VQIANIYELLEDPAQAIELLMQANSLI------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP----CNIETIEW  631 (840)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHhcccC------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC----cchHHHHH
Confidence            889999999999999999988887542      22234667788888888888888777665432210    11234555


Q ss_pred             HHHHH-hcCCHHHHHHHHhhc-ccccc-hHHHHHHhccC
Q 026767          172 LISAY-TEGDVEEIKRVAQSS-AISNL-DHVIIKLARKL  207 (233)
Q Consensus       172 L~~a~-~~gd~~~a~~~~~~~-~~~~l-d~~~~~l~~~l  207 (233)
                      |+..| +..=.+++..+++++ ++..- ..|...++..+
T Consensus       632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~  670 (840)
T KOG2003|consen  632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF  670 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence            55555 444455555555555 33332 22555555443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.87  E-value=1.8e-07  Score=70.97  Aligned_cols=110  Identities=15%  Similarity=0.037  Sum_probs=87.6

Q ss_pred             HHHHHcCCc-hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 026767           37 ELYNECGRS-QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRW  114 (233)
Q Consensus        37 ~l~~~~g~~-~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~a  114 (233)
                      .+..-.+-. ...-..+..+|..+. .|++++|...|+-.+.+-...      ..-+.++|.++..+|+|.+|++.|.++
T Consensus        22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             cHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            333333433 445556667777777 799999999999888776542      357889999999999999999999999


Q ss_pred             HHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          115 GLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       115 l~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      +.+-      +.-...++++|.|++..|+.+.|++.|+.++...
T Consensus        96 ~~L~------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         96 AQIK------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HhcC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9762      3445678999999999999999999999998555

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.84  E-value=2.1e-07  Score=80.09  Aligned_cols=175  Identities=13%  Similarity=-0.047  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-----
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-----   81 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-----   81 (233)
                      .+.++..+|.++...|+++++...+.++.......-+.   .......+.++. .|++++|+..++++++..+..     
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE---RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            34556666666666666666666666666555433322   112223344444 566666666666655442211     


Q ss_pred             --------------------------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHH
Q 026767           82 --------------------------DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAI  135 (233)
Q Consensus        82 --------------------------g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg  135 (233)
                                                +........+..+|.++...|++++|+..+++++.+..      ....++..+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p------~~~~~~~~la  155 (355)
T cd05804          82 LHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP------DDAWAVHAVA  155 (355)
T ss_pred             HhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCcHHHHHHH
Confidence                                      11111123556778888899999999999999987632      2245678889


Q ss_pred             HHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          136 IVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       136 ~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .++...|++++|+.++++++................++..+ ..|+.++|...+++.
T Consensus       156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999987443221122223344566666 789999999888886

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.82  E-value=1.5e-07  Score=74.93  Aligned_cols=126  Identities=13%  Similarity=0.107  Sum_probs=99.2

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHH-H
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVY-L  139 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~  139 (233)
                      .++.++++..+++++...+..      ...+..+|.+|...|++++|+..|++++.+.      +.....+..+|.++ .
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------P~~~~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQN------SEQWALLGEYYLWRNDYDNALLAYRQALQLR------GENAELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence            477889999999999887654      2578899999999999999999999999762      34456788999875 6


Q ss_pred             hhCC--HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHH
Q 026767          140 YAND--FKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIK  202 (233)
Q Consensus       140 ~~gd--~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~  202 (233)
                      ..|+  +.+|...+++++....    .+..++..|+..+ +.||+++|..+|++. -...-+..+..
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP----~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~  182 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDA----NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ  182 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            7787  5999999999984431    2356788888877 899999999999999 34443444333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.81  E-value=3.9e-07  Score=70.85  Aligned_cols=98  Identities=10%  Similarity=0.069  Sum_probs=77.3

Q ss_pred             HcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767           41 ECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD  119 (233)
Q Consensus        41 ~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~  119 (233)
                      ........+.++.+.|.++. .|++++|+.+|++++.+.+....   ...++.++|.++...|++++|+.+|++++.+..
T Consensus        27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            34445678889999999999 79999999999999998765332   245899999999999999999999999997632


Q ss_pred             HccCcchHHHhHHHHHHHHHhhCCHHHH
Q 026767          120 KCNATNSQCKAYLSAIIVYLYANDFKQA  147 (233)
Q Consensus       120 ~~~~~~~~a~~~~~lg~~~~~~gd~~~A  147 (233)
                            .....+..+|.++...|+...+
T Consensus       104 ------~~~~~~~~lg~~~~~~g~~~~a  125 (172)
T PRK02603        104 ------KQPSALNNIAVIYHKRGEKAEE  125 (172)
T ss_pred             ------ccHHHHHHHHHHHHHcCChHhH
Confidence                  2345567778888777664333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.80  E-value=4.4e-07  Score=86.24  Aligned_cols=179  Identities=8%  Similarity=-0.077  Sum_probs=117.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc--------CChH
Q 026767           15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED--------DKEQ   85 (233)
Q Consensus        15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~--------g~~~   85 (233)
                      +|.+|...|++++|+.+|++++..-  ..+.........+++.++. .|++++|+.+++++....+..        ..+.
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~  355 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN  355 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence            4666667777777777777765421  1111111233455555666 688899988888888765321        1111


Q ss_pred             -HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCc
Q 026767           86 -MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRS  163 (233)
Q Consensus        86 -~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~  163 (233)
                       ....++..++.++...|++++|++.+++++..      .+.....+..++.++...|++.+|++.+++++.+ |..   
T Consensus       356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~---  426 (765)
T PRK10049        356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN------APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN---  426 (765)
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---
Confidence             12246678889999999999999999998865      2333567899999999999999999999999854 322   


Q ss_pred             hHHHHHHHHHHHH-hcCCHHHHHHHHhhcccccchH-HHHHHhcc
Q 026767          164 DQNRCATKLISAY-TEGDVEEIKRVAQSSAISNLDH-VIIKLARK  206 (233)
Q Consensus       164 ~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~~~~ld~-~~~~l~~~  206 (233)
                        ..+...++... ..|++++|...+++.+-...+. .+.++.+.
T Consensus       427 --~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~  469 (765)
T PRK10049        427 --INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA  469 (765)
T ss_pred             --hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence              22444444444 7899999999998884444433 44444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.79  E-value=1.3e-06  Score=81.61  Aligned_cols=186  Identities=13%  Similarity=0.134  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHcCCchHHH-----------------------
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASEL---------------YNECGRSQPAS-----------------------   49 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l---------------~~~~g~~~~~a-----------------------   49 (233)
                      .+.+|.++|.+|..+|+|++|..||.+|+..               |...|+...+.                       
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence            4677899999999999999999999999873               11122222111                       


Q ss_pred             -----------------------------HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767           50 -----------------------------DALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK  100 (233)
Q Consensus        50 -----------------------------~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~  100 (233)
                                                   .+|..++.+++.+++-.++.+|.+|+.++...+... -..+++|+|..+..
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i-p~E~LNNvaslhf~  464 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI-PPEVLNNVASLHFR  464 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC-CHHHHHhHHHHHHH
Confidence                                         245555666667777777888888888888877663 34688888888888


Q ss_pred             hccHHHHHHHHHHHHHHHhHccCc-c---hHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHH-H
Q 026767          101 LEKYADAATFLLRWGLAADKCNAT-N---SQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLI-S  174 (233)
Q Consensus       101 ~g~~~~A~~~~~~al~~~~~~~~~-~---~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~-~  174 (233)
                      +|.+.+|..+|.+|+..+....+. .   ......++++.|.-..++++.|.+.|...+ ..|++.+     .-..|| -
T Consensus       465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId-----~ylRl~~m  539 (1018)
T KOG2002|consen  465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYID-----AYLRLGCM  539 (1018)
T ss_pred             hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHH-----HHHHhhHH
Confidence            888888888888888775532211 1   112234888888888888888888888877 5565522     222333 2


Q ss_pred             HHhcCCHHHHHHHHhhc-ccccchHH
Q 026767          175 AYTEGDVEEIKRVAQSS-AISNLDHV  199 (233)
Q Consensus       175 a~~~gd~~~a~~~~~~~-~~~~ld~~  199 (233)
                      +-..+....+...++.. .+....+.
T Consensus       540 a~~k~~~~ea~~~lk~~l~~d~~np~  565 (1018)
T KOG2002|consen  540 ARDKNNLYEASLLLKDALNIDSSNPN  565 (1018)
T ss_pred             HHhccCcHHHHHHHHHHHhcccCCcH
Confidence            22456666667777766 44444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.78  E-value=6.5e-08  Score=65.19  Aligned_cols=93  Identities=20%  Similarity=0.238  Sum_probs=63.8

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK  129 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~  129 (233)
                      ++.++|.++. .|++++|+.++++++...+...      .++..+|.++...+++++|+.+|++++.+....      ..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN------AK   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------hh
Confidence            3566677776 6777777777777776654321      456677777777788888888777777543211      14


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ++..++.++...|++.+|...+.+++
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            56777777777788888877777765

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.77  E-value=4e-07  Score=86.57  Aligned_cols=152  Identities=14%  Similarity=0.095  Sum_probs=119.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 026767           17 ALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAAT   95 (233)
Q Consensus        17 ~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg   95 (233)
                      .+....|++++|+..+.++..+-      ...+.++..+|.++. .|++++|++.|++++++.+...      .+...++
T Consensus        23 ~ia~~~g~~~~A~~~~~~~~~~~------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~la   90 (765)
T PRK10049         23 QIALWAGQDAEVITVYNRYRVHM------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND------DYQRGLI   90 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHH
Confidence            44556899999998888876521      334677999999999 7999999999999998866432      3567899


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 026767           96 NVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISA  175 (233)
Q Consensus        96 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a  175 (233)
                      .++...|++++|+.++++++...      +.... +..+|.++...|++.+|+..+++++....    ....+...++.+
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P----~~~~~~~~la~~  159 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGA------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP----QTQQYPTEYVQA  159 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHH
Confidence            99999999999999999998752      22233 78899999999999999999999985431    124444556777


Q ss_pred             H-hcCCHHHHHHHHhhc
Q 026767          176 Y-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       176 ~-~~gd~~~a~~~~~~~  191 (233)
                      + ..+..+.|...++..
T Consensus       160 l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049        160 LRNNRLSAPALGAIDDA  176 (765)
T ss_pred             HHHCCChHHHHHHHHhC
Confidence            7 678888888877765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.76  E-value=2.1e-07  Score=77.93  Aligned_cols=131  Identities=20%  Similarity=0.131  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      .....+...|.++.+.|++++|+.+|++|+.+.-      .-..+...++.++. .|+++++.+.+.......+....  
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~--  215 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDP------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD--  215 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH--
Confidence            4567788999999999999999999999999862      23445677888888 79999977777776666644332  


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                          .+..+|.++..+|++++|+.+|++++..      .+.....+..++.++...|+.++|...+.+++
T Consensus       216 ----~~~~la~~~~~lg~~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  216 ----LWDALAAAYLQLGRYEEALEYLEKALKL------NPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             ----HCHHHHHHHHHHT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT----------------
T ss_pred             ----HHHHHHHHhccccccccccccccccccc------cccccccccccccccccccccccccccccccc
Confidence                4567899999999999999999998864      23344577899999999999999999999876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.75  E-value=6.5e-08  Score=65.20  Aligned_cols=95  Identities=24%  Similarity=0.235  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      ++.++|.++...|++++|+.++++++......      ..++..+|.++. .+++++|++++++++.+.+...      .
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence            57788999999999999999999998874322      267889999999 7999999999999998866543      5


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ++..+|.++...|++++|..++.+++..
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            7889999999999999999999988754

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.75  E-value=2.4e-07  Score=75.07  Aligned_cols=140  Identities=14%  Similarity=0.093  Sum_probs=105.7

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKA  130 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~  130 (233)
                      +.-.|+... .|++.+|+..++++..+.+...      ..++.+|-+|.+.|+++.|..-|.+++++.-      .....
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~------~~p~~  170 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW------EAWNLLGAALDQLGRFDEARRAYRQALELAP------NEPSI  170 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCCh------hhhhHHHHHHHHccChhHHHHHHHHHHHhcc------CCchh
Confidence            333677767 6999999999999998877643      5788899999999999999999999998742      33456


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHhccC
Q 026767          131 YLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLARKL  207 (233)
Q Consensus       131 ~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l  207 (233)
                      +.|+|..+.-.||+..|+.++..+...+.-    ...+..+|..+. ..||++.|+....+- .-..-++.+.-|..-.
T Consensus       171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~a----d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~~~~~~~~~~l~~~~  245 (257)
T COG5010         171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAA----DSRVRQNLALVVGLQGDFREAEDIAVQELLSEQAANNVAALRAAA  245 (257)
T ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC----chHHHHHHHHHHhhcCChHHHHhhccccccchhHhhHHHHHHHhh
Confidence            789999999999999999999988754432    245677777777 789999998887766 4444455555444433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.74  E-value=4.8e-06  Score=66.55  Aligned_cols=172  Identities=17%  Similarity=0.074  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ..-++.+-..|..+...|++.+|+..|++....|..   ...+..+...+|.++. .|++++|+..|++-+..++.....
T Consensus         2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~   78 (203)
T PF13525_consen    2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA   78 (203)
T ss_dssp             ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence            345677888888888999999999999999988743   3356677889999999 899999999999999999987653


Q ss_pred             HHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHhHccC-----------cchHHHhHHHHHHHHHhhC
Q 026767           85 QMAFDLYRAATNVYIKLE-----------KYADAATFLLRWGLAADKCNA-----------TNSQCKAYLSAIIVYLYAN  142 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~-----------~~~~a~~~~~lg~~~~~~g  142 (233)
                         ..++..+|.++..+.           ...+|+..|+..+..+-...-           ....+..-+.+|..|...|
T Consensus        79 ---~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~  155 (203)
T PF13525_consen   79 ---DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG  155 (203)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ---hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence               356777777765543           345888888888765543321           2233444578899999999


Q ss_pred             CHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-hcCCHHHHH
Q 026767          143 DFKQAEKCYNDCSQV-DAFLRSDQNRCATKLISAY-TEGDVEEIK  185 (233)
Q Consensus       143 d~~~A~~~~~~al~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~a~  185 (233)
                      .|..|...++.++.. ++.  .....++..|++++ ..|....+.
T Consensus       156 ~y~aA~~r~~~v~~~yp~t--~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  156 KYKAAIIRFQYVIENYPDT--PAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             -HHHHHHHHHHHHHHSTTS--HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHhCChHHHH
Confidence            999999999998733 332  22334788888988 788877544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=1.4e-07  Score=77.87  Aligned_cols=100  Identities=21%  Similarity=0.247  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..|..+.+=|.-+. .++|.+|+..|.+||++-+..      +..|.+-+.+|.++|.|+.|++-++.++.+      .+
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp  146 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSI------DP  146 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhc------Ch
Confidence            34555666666666 689999999999999987653      247788999999999999999999999975      44


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      .-.++|..+|++|+.+|++.+|++.|.+++.+.
T Consensus       147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLeld  179 (304)
T KOG0553|consen  147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALELD  179 (304)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence            557889999999999999999999999998653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.73  E-value=8.1e-07  Score=67.39  Aligned_cols=100  Identities=13%  Similarity=0.044  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .-+.+..+|..+...|++++|...|+-...+-     + ..+.-+.++|.++. .|++++|+..|.+|+.+-++..    
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-----p-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp----  103 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-----A-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP----  103 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----
Confidence            34556667777788999999999999887763     3 46788999999999 8999999999999999986433    


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAAD  119 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~  119 (233)
                        .++.++|.++...|+.+.|...|+.++..+.
T Consensus       104 --~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        104 --QAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             --hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence              4788999999999999999999999999883

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.72  E-value=2.1e-07  Score=80.13  Aligned_cols=138  Identities=15%  Similarity=0.113  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------H----cCCc--------------hHHHHHHHHHHHHh
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYN-------------E----CGRS--------------QPASDALAKAARAL   59 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~-------------~----~g~~--------------~~~a~~l~~lg~~~   59 (233)
                      .....+.++...|++++|+.+++++++.+-             .    .|..              .....++..+|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            344556777778999999999888776421             1    1111              22223445667788


Q ss_pred             h-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHH
Q 026767           60 E-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVY  138 (233)
Q Consensus        60 ~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~  138 (233)
                      . .|++++|+..+++++++.+..      ..++..+|.++...|++++|+.++++++.....  ........+..++.++
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~  196 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFY  196 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHH
Confidence            8 799999999999999987654      357888999999999999999999999976433  2233345678899999


Q ss_pred             HhhCCHHHHHHHHHHhhc
Q 026767          139 LYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus       139 ~~~gd~~~A~~~~~~al~  156 (233)
                      +..|++++|...|++++.
T Consensus       197 ~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         197 LERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHCCCHHHHHHHHHHHhc
Confidence            999999999999999863

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.72  E-value=1.4e-07  Score=64.38  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=62.6

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~  140 (233)
                      +|+++.|+.+|++.++..+.  ++  ....+..+|.++.++|+|++|+.++++ ...    +.  ....+...+|.|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~----~~--~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL----DP--SNPDIHYLLARCLLK   70 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH----HH--CHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC----CC--CCHHHHHHHHHHHHH
Confidence            47899999999999988885  11  224677799999999999999999988 322    11  224455667999999


Q ss_pred             hCCHHHHHHHHHHh
Q 026767          141 ANDFKQAEKCYNDC  154 (233)
Q Consensus       141 ~gd~~~A~~~~~~a  154 (233)
                      +|++++|+++|+++
T Consensus        71 l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   71 LGKYEEAIKALEKA   84 (84)
T ss_dssp             TT-HHHHHHHHHHH
T ss_pred             hCCHHHHHHHHhcC
Confidence            99999999999875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.71  E-value=3.7e-07  Score=67.61  Aligned_cols=99  Identities=12%  Similarity=0.083  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ........+|..+. .|++++|++.+++++.+.+..      ..++.++|.++...|++++|+.+|++++.+.      +
T Consensus        15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p   82 (135)
T TIGR02552        15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALD------P   82 (135)
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C
Confidence            34566788888888 799999999999988875432      2577889999999999999999999988652      2


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      .....+..+|.++...|++.+|...|++++..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            23556788999999999999999999998844

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.70  E-value=4.4e-07  Score=65.25  Aligned_cols=104  Identities=15%  Similarity=0.039  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ++.+.+.|..+...|++++|+.+|.+++..+   .+......++..+|.++. .|++++|+.+|++++..++....   .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~   75 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---A   75 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---c
Confidence            3567888899999999999999999998764   222234667888999999 79999999999999987754321   1


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      ..++..+|.++..+|++++|+.++++++...
T Consensus        76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        76 PDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            2468889999999999999999999998764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=8.2e-07  Score=78.29  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---------------------CCchHHHHHHHHHHHHhh-hCCH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNEC---------------------GRSQPASDALAKAARALE-DAVP   64 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~---------------------g~~~~~a~~l~~lg~~~~-~g~~   64 (233)
                      -.++++..+|+.|...++++.++.+|++++.-++.-                     -++.. +.-...-|.-+. .|+|
T Consensus       296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY  374 (539)
T ss_pred             HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence            367778889999999999999999999999877640                     11111 222223355555 7999


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH
Q 026767           65 EDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF  144 (233)
Q Consensus        65 ~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~  144 (233)
                      ..|+.+|.+|+..-+..      +..+.|.+.+|.++|.+..|+.-++.++++      .+...+.|+.-|.++..+.+|
T Consensus       375 ~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~~kgy~RKg~al~~mk~y  442 (539)
T KOG0548|consen  375 PEAVKHYTEAIKRDPED------ARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNFIKAYLRKGAALRAMKEY  442 (539)
T ss_pred             HHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHH
Confidence            99999999988776432      368999999999999999999999999876      444567788889999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHh
Q 026767          145 KQAEKCYNDCSQVDAFLRSDQNRCATKLISAYT  177 (233)
Q Consensus       145 ~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~  177 (233)
                      ++|.+.|++++...    +...+++..+.++++
T Consensus       443 dkAleay~eale~d----p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  443 DKALEAYQEALELD----PSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHhcC----chhHHHHHHHHHHHH
Confidence            99999999998543    344667777777663

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.70  E-value=5.9e-06  Score=67.93  Aligned_cols=172  Identities=10%  Similarity=-0.031  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      ..+...|..+...|++++|+..|++.+..+...   .-...+...+|.++. .+++++|+.+|++.+..++...+.   .
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---~  106 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---D  106 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---H
Confidence            334455666667899999999999999977522   456667889999999 799999999999999999988754   3


Q ss_pred             HHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHHHhHcc-----------CcchHHHhHHHHHHHHH
Q 026767           89 DLYRAATNVYIKLE------------------KYADAATFLLRWGLAADKCN-----------ATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        89 ~~l~~lg~~~~~~g------------------~~~~A~~~~~~al~~~~~~~-----------~~~~~a~~~~~lg~~~~  139 (233)
                      .++..+|.++..++                  ...+|+..|++.+..+-+..           .+...+.--+.+|.-|.
T Consensus       107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~  186 (243)
T PRK10866        107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT  186 (243)
T ss_pred             HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777654443                  13467788888776553321           11223444478889999


Q ss_pred             hhCCHHHHHHHHHHhhc-CCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHh
Q 026767          140 YANDFKQAEKCYNDCSQ-VDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQ  189 (233)
Q Consensus       140 ~~gd~~~A~~~~~~al~-~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~  189 (233)
                      +.|.|..|...++..+. -+..  ...-++|.-+.+++ ..|..+.+....+
T Consensus       187 ~~~~y~AA~~r~~~v~~~Yp~t--~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        187 KRGAYVAVVNRVEQMLRDYPDT--QATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HcCchHHHHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            99999999999999873 3332  23445788889999 7999999887664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.70  E-value=3.1e-06  Score=63.92  Aligned_cols=128  Identities=16%  Similarity=0.087  Sum_probs=93.1

Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHH
Q 026767           53 AKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYL  132 (233)
Q Consensus        53 ~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~  132 (233)
                      ..+-..+..+++..+...+++-+.-+.   +...+..+...+|.++...|++++|...|++++...   .+......+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l   89 (145)
T PF09976_consen   16 EQALQALQAGDPAKAEAAAEQLAKDYP---SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHH
Confidence            333333335666666554554444333   333455678889999999999999999999998742   34444556779


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          133 SAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       133 ~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .++.+++..|++++|+..++... .    ......+...+|+++ ..||.+.|+.+++.+
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~-~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIP-D----EAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhcc-C----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            99999999999999999997632 1    223456777899988 899999999998875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.69  E-value=2.7e-07  Score=68.34  Aligned_cols=100  Identities=15%  Similarity=0.029  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      .....+...|..+...|++++|+.++++++.+.     + ....++.++|.++. .|++++|+.+|++++.+.+..    
T Consensus        15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----   84 (135)
T TIGR02552        15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-----P-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD----   84 (135)
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence            345778899999999999999999999998863     2 24678889999998 899999999999999886442    


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                        ...+..+|.++...|++++|+..|++++.+.
T Consensus        85 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        85 --PRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence              2577889999999999999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.68  E-value=1.5e-06  Score=63.46  Aligned_cols=101  Identities=19%  Similarity=0.133  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      ++..+.|.++...|+.++|+.+|++|+..-  . +......++.++|..+. .|++++|+..+++++.-++..+...   
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~---   75 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA---   75 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH---
Confidence            456778888888999999999999997731  1 12244568888899888 7999999999998887665533221   


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                      .+..-++.++...|++++|+..+-.++.
T Consensus        76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   76 ALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2334467788888999999988877764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.67  E-value=5.5e-07  Score=64.73  Aligned_cols=102  Identities=20%  Similarity=0.067  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767           50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC  128 (233)
Q Consensus        50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a  128 (233)
                      ..+...|..+. .|++++|+..|.+++..++...   ....++..+|.++...|++++|+.+|++++....   ......
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~   76 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAP   76 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCccc
Confidence            56778888888 7999999999999997765322   1235788899999999999999999999986532   222234


Q ss_pred             HhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          129 KAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       129 ~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      .++..+|.++...|++.+|...+++++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            56899999999999999999999998743

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.67  E-value=1.9e-07  Score=61.08  Aligned_cols=63  Identities=13%  Similarity=0.283  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC-CHHHHHHHHHHhhc
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN-DFKQAEKCYNDCSQ  156 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-d~~~A~~~~~~al~  156 (233)
                      +.++..+|.++...|+|++|+.+|++++.+      .+..+.++.++|.++..+| ++.+|++.+++++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            468899999999999999999999999986      3445678999999999999 79999999999874

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=6.7e-07  Score=76.69  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD---------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g---------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      +|.....-|..|. .|+|..|+..|++|+.++....         -......|+.|++.++.++++|.+|+..+.++|++
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            4445555566666 6788888888888887776322         11122358999999999999999999999999975


Q ss_pred             HhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          118 ADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       118 ~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                            .+...++++.-|.+++.+|+|+.|+..|++++.+.
T Consensus       287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~  321 (397)
T KOG0543|consen  287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE  321 (397)
T ss_pred             ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence                  45667899999999999999999999999999654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=4.5e-07  Score=80.51  Aligned_cols=96  Identities=11%  Similarity=0.038  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767           50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC  128 (233)
Q Consensus        50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a  128 (233)
                      .+..-+|.+|. .|+|++|+.+|+.||..-+...      ..+++||-.+....++.+|+..|+||+.+      .++-.
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~------~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP~yV  498 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY------LLWNRLGATLANGNRSEEAISAYNRALQL------QPGYV  498 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH------HHHHHhhHHhcCCcccHHHHHHHHHHHhc------CCCee
Confidence            44555677777 6888888888888887655432      47788888888888888888888888865      44445


Q ss_pred             HhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          129 KAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       129 ~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ++..++|+.|.-+|.|.+|.++|-.++.+
T Consensus       499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  499 RVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             eeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            66788888888888888888888888743

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.63  E-value=3.3e-07  Score=79.54  Aligned_cols=90  Identities=21%  Similarity=0.211  Sum_probs=62.1

Q ss_pred             HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHH
Q 026767           56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSA  134 (233)
Q Consensus        56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l  134 (233)
                      |.... .|++++|+.+|.+|+++....      ..++.++|.+|..+|++++|+..+++++.+.      +....+++.+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a~~~l   76 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKAYLRK   76 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHHHHHH
Confidence            33333 677777777777777765532      2466777777777788888887777777652      2334567777


Q ss_pred             HHHHHhhCCHHHHHHHHHHhhcC
Q 026767          135 IIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       135 g~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      |.++..+|++.+|+..|++++.+
T Consensus        77 g~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         77 GTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHh
Confidence            77777778888888877777743

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.62  E-value=8.9e-07  Score=76.84  Aligned_cols=94  Identities=20%  Similarity=0.116  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL   90 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~   90 (233)
                      +..-|......|++++|+.+|++|+.+.-      ....++.++|.+|. .|++++|+..+++|+.+.+..      ..+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a   72 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKA   72 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHH
Confidence            44556666678999999999999998642      23567899999999 799999999999999987642      357


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      +.++|.++..+|+|++|+.+|++++.+
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            899999999999999999999999976

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=8.9e-07  Score=73.18  Aligned_cols=122  Identities=18%  Similarity=0.085  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ...|+.+..=|+-....++|.+|++.|.+|+.+-     | .-|..|.|-+-+|. .|+++.|++-++.|+.+-+.    
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-----P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~----  147 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-----P-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH----  147 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----C-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH----
Confidence            3567778888888888999999999999999984     3 34566777777777 79999999999999988663    


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHH
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFK  145 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~  145 (233)
                        -..+|.++|.+|+.+|+|.+|++.|++++++-     +.. .....+|..+...+++..
T Consensus       148 --yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~N-e~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  148 --YSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PDN-ESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             --HHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CCc-HHHHHHHHHHHHHhcCCC
Confidence              23689999999999999999999999999872     222 222355555555555443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.60  E-value=1.7e-06  Score=63.13  Aligned_cols=100  Identities=16%  Similarity=0.022  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767           50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC  128 (233)
Q Consensus        50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a  128 (233)
                      .++.+.|.++. .|++++|+.+|++|++.-.. +  .....++..+|..+..+|++++|+..+++++.-+   ++.....
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-~--~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~   75 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS-G--ADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNA   75 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-c--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccH
Confidence            45778899999 89999999999999984211 2  2334688899999999999999999999988533   2222233


Q ss_pred             HhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          129 KAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       129 ~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      .....++.+....|++.+|+..+-.++
T Consensus        76 ~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   76 ALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344557788899999999999988876

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=2.7e-07  Score=81.89  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-AVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +....-+|.+|...|.|++|++||+.|+..      ...-...|+++|-.+.. .+.++||..|.+|+++.+.-      
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y------  497 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQV------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY------  497 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhc------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe------
Confidence            456778999999999999999999999876      33567789999999994 78999999999999998853      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      ..+..|+|..++.+|.|.+|+.+|-.||.+.++.
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence            3578899999999999999999999999997764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.58  E-value=3.8e-07  Score=59.62  Aligned_cols=63  Identities=17%  Similarity=0.150  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE-KYADAATFLLRWGLA  117 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g-~~~~A~~~~~~al~~  117 (233)
                      |.++.+.|.++. .|++++|+.+|++|+++.+.      -..++.++|.++..+| ++.+|+..+++++.+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            456677777777 67777777777777776432      1246777777777777 677777777777654

...

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=2.8e-07  Score=77.12  Aligned_cols=171  Identities=13%  Similarity=0.072  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL   90 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~   90 (233)
                      -.++|.+|.++|-+.+|...++.+++-+.       ....+.-++++|. ..++..|+..|.+.++.|+..      ...
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~~-------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~------VT~  292 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFP-------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD------VTY  292 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch------hhh
Confidence            36789999999999999998888887542       1223333444444 344445555554444444421      123


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHH---------------------------h---HccCcchHHHhHHHHHHHHHh
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLAA---------------------------D---KCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------------~---~~~~~~~~a~~~~~lg~~~~~  140 (233)
                      +..++.++..++++++|+++|+++++..                           +   +.|-.  ....+.|||+|++.
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~y  370 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLY  370 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHh
Confidence            3444444444445555555444443311                           0   11222  23467899999999


Q ss_pred             hCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhcccccchH
Q 026767          141 ANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSSAISNLDH  198 (233)
Q Consensus       141 ~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~~~~ld~  198 (233)
                      .+.++-++..|++++..... ....+.+..+|+... .-||+..|..+++-++...-++
T Consensus       371 aqQ~D~~L~sf~RAlstat~-~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h  428 (478)
T KOG1129|consen  371 AQQIDLVLPSFQRALSTATQ-PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH  428 (478)
T ss_pred             hcchhhhHHHHHHHHhhccC-cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence            99999999999999855432 234566888999866 7899999999999885554444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.54  E-value=9.7e-07  Score=60.22  Aligned_cols=83  Identities=23%  Similarity=0.247  Sum_probs=64.3

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI   99 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~   99 (233)
                      +.|++++|+.+|++.+.....  ++  ....+..+|.++. .|++++|+.++++ ..+-...      ..+..-+|.++.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~------~~~~~l~a~~~~   69 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN------PDIHYLLARCLL   69 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH------HHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC------HHHHHHHHHHHH
Confidence            368999999999999998754  22  4556777999999 7999999999999 3333321      245556799999


Q ss_pred             HhccHHHHHHHHHHH
Q 026767          100 KLEKYADAATFLLRW  114 (233)
Q Consensus       100 ~~g~~~~A~~~~~~a  114 (233)
                      ++|+|++|+.+|+++
T Consensus        70 ~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   70 KLGKYEEAIKALEKA   84 (84)
T ss_dssp             HTT-HHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhcC
Confidence            999999999999875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.6e-06  Score=73.26  Aligned_cols=135  Identities=16%  Similarity=0.113  Sum_probs=105.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCC---chHHH---HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           16 AALAKELHNWREVADFYRKASELYNECGR---SQPAS---DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        16 g~~~~~~g~~~eA~~~~~~A~~l~~~~g~---~~~~a---~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      |.++.-.++.+.|+.+|++++.+-...-+   .....   ..+.+-|.-.. .|.+..|.+.|..||.+-+..-+  ..+
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~--~na  287 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK--TNA  287 (486)
T ss_pred             ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc--hhH
Confidence            33444567889999999999998543322   22222   23344465555 79999999999999999888443  456


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      .+|.|.+.+.+++|+..+|+.-+..++.+      ...-.++|..-|.||+.++++++|.+.|+++++..
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            89999999999999999999999999976      33445788999999999999999999999998543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.50  E-value=3.7e-06  Score=78.70  Aligned_cols=173  Identities=11%  Similarity=0.049  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      -++..+++.|...|+|..+...+.-|+..-   -.....+..+..+|..|. +|++++|-.||.+|+...+..     -.
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~  342 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FV  342 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----cc
Confidence            456777888888899999988888877654   233456788999999999 899999999999998776643     12


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc--------------------------------cCcchHHHhHHHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKC--------------------------------NATNSQCKAYLSAII  136 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------~~~~~~a~~~~~lg~  136 (233)
                      ..+..+|.+++..|++..|..+|++.++.....                                ...+....++..++.
T Consensus       343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq  422 (1018)
T KOG2002|consen  343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ  422 (1018)
T ss_pred             ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            467889999999999999999999887532110                                011112223334444


Q ss_pred             HHHhhCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          137 VYLYANDFKQAEKCYNDCSQVDA-FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       137 ~~~~~gd~~~A~~~~~~al~~~~-~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++.. +|.-.++.+|..|+.+-. ....-.-++|+++|..+ ..|+++.|..++.++
T Consensus       423 l~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A  478 (1018)
T KOG2002|consen  423 LLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA  478 (1018)
T ss_pred             HHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence            4332 344444555555552221 12224455666666655 666666666666666

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.9e-05  Score=69.79  Aligned_cols=173  Identities=18%  Similarity=0.164  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHH----------------------------------HHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASD----------------------------------ALA   53 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~----------------------------------~l~   53 (233)
                      .+....++|+......++..|+++|.+++++....++....+.                                  ++.
T Consensus       223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~  302 (539)
T KOG0548|consen  223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA  302 (539)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence            4666778888777788888888888888888755544443333                                  333


Q ss_pred             HHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 026767           54 KAARALE-DAVPEDAIQLYTDACIMLEEDDKE--------------------QMAFDLYRAATNVYIKLEKYADAATFLL  112 (233)
Q Consensus        54 ~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~--------------------~~~~~~l~~lg~~~~~~g~~~~A~~~~~  112 (233)
                      .+|..|. .++++.++.+|.+++.-++..+..                    ...+.-...-|.-+.+.|+|..|+.+|.
T Consensus       303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt  382 (539)
T KOG0548|consen  303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT  382 (539)
T ss_pred             HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            3444455 466666666666666666552210                    0011112233445566666666666666


Q ss_pred             HHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhh
Q 026767          113 RWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQS  190 (233)
Q Consensus       113 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~  190 (233)
                      +++..      .+.-++.|.|.+.||+.+|.+..|++..+.++.+ +.|    ....+.. |.++ ...+++.|.+++++
T Consensus       383 eAIkr------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~----~kgy~RK-g~al~~mk~ydkAleay~e  451 (539)
T KOG0548|consen  383 EAIKR------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF----IKAYLRK-GAALRAMKEYDKALEAYQE  451 (539)
T ss_pred             HHHhc------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH----HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            66542      2445566677777777777777777776666643 222    1112222 3333 45667777777776


Q ss_pred             c
Q 026767          191 S  191 (233)
Q Consensus       191 ~  191 (233)
                      +
T Consensus       452 a  452 (539)
T KOG0548|consen  452 A  452 (539)
T ss_pred             H
Confidence            6

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.49  E-value=7.5e-06  Score=66.51  Aligned_cols=162  Identities=19%  Similarity=0.218  Sum_probs=117.0

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 026767           35 ASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLR  113 (233)
Q Consensus        35 A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~  113 (233)
                      +..++.......+-..+ .+.+..+. .|+-+.++.+..+++..+....      ..+.-+|......|+|..|+..+++
T Consensus        53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rk  125 (257)
T COG5010          53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRK  125 (257)
T ss_pred             HHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHH
Confidence            33444444444444444 66666666 6888888887777665555422      3555699999999999999999999


Q ss_pred             HHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhcc
Q 026767          114 WGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSSA  192 (233)
Q Consensus       114 al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~  192 (233)
                      +..+      .+..+..+..+|.+|...|+++.|+..|.+++.+..    .+..++.+|+-.+ -.||.+.|+..+.++.
T Consensus       126 A~~l------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~----~~p~~~nNlgms~~L~gd~~~A~~lll~a~  195 (257)
T COG5010         126 AARL------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP----NEPSIANNLGMSLLLRGDLEDAETLLLPAY  195 (257)
T ss_pred             Hhcc------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc----CCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            9865      455677899999999999999999999999997652    3567888998877 7999999999999883


Q ss_pred             cccc-hH-HHHHHhccC-CCCchh
Q 026767          193 ISNL-DH-VIIKLARKL-PTGDVS  213 (233)
Q Consensus       193 ~~~l-d~-~~~~l~~~l-~~~~~~  213 (233)
                      ...- |. -...++... ..|++.
T Consensus       196 l~~~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         196 LSPAADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             hCCCCchHHHHHHHHHHhhcCChH
Confidence            2222 22 234444433 345554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.49  E-value=3.1e-05  Score=64.89  Aligned_cols=142  Identities=11%  Similarity=0.001  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +.-+-.++..+-++|....+|.+|++..++-..+-.+..+ -..|..+-.++..+. ..+.+.|+.++.+|++-.+..- 
T Consensus       137 ~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~-~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv-  214 (389)
T COG2956         137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR-VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV-  214 (389)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce-
Confidence            3345567788888888888888888887776666443333 368888999999999 7999999999999997766432 


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                           .+-..+|.+....|+|.+|++.++++++     .++-....+...+-.||..+|+..+.+..+.++.+..
T Consensus       215 -----RAsi~lG~v~~~~g~y~~AV~~~e~v~e-----Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         215 -----RASIILGRVELAKGDYQKAVEALERVLE-----QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             -----ehhhhhhHHHHhccchHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence                 3445689999999999999999998885     2455667778899999999999999999999998554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=4.9e-06  Score=72.96  Aligned_cols=164  Identities=13%  Similarity=0.137  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      .|.+-|.++.-++++++|+.-|++|..+-      ..-+-.+..++-..+ ++.++++...|+.+..-|+..      .+
T Consensus       396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~E  463 (606)
T KOG0547|consen  396 VYYHRGQMRFLLQQYEEAIADFQKAISLD------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PE  463 (606)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------ch
Confidence            34455555555555566666666555552      133444555555555 566666666666666666653      36


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHH-
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNR-  167 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~-  167 (233)
                      +++-.|.++..++++++|++.|..++++-.........+..+ .....+....+|+.+|.+.+++++.+..     +|+ 
T Consensus       464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp-----kce~  538 (606)
T KOG0547|consen  464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP-----KCEQ  538 (606)
T ss_pred             HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc-----hHHH
Confidence            788888888889999999999998887743322222122222 2333344466888889888888885431     222 


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          168 CATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       168 ~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +...|+..- ..|+.++|.+..+.+
T Consensus       539 A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  539 AYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            445566654 788999999888887

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.45  E-value=1.3e-05  Score=76.32  Aligned_cols=158  Identities=8%  Similarity=-0.024  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      ....-+.+..+.|++++|++.+++++...     +.....++ .+..++. .|+.++|+.++++++  .+ ...   ...
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~av~-dll~l~~~~G~~~~A~~~~eka~--~p-~n~---~~~  103 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKAG-----PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SS-MNI---SSR  103 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cC-CCC---CHH
Confidence            34445566667999999999999998875     33222222 6666666 699999999999998  11 111   123


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA  169 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l  169 (233)
                      .+..+|.++...|+|++|+++|+++++..      +....++..++.++...+++++|++.++++......     ....
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~d------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-----~~~~  172 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKD------PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-----VQNY  172 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-----hHHH
Confidence            55566889999999999999999998652      222455667788999999999999999998743221     1111


Q ss_pred             HHHHHHH-hcCCHHHHHHHHhhc
Q 026767          170 TKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       170 ~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..++..+ ..++...|.+.+++.
T Consensus       173 l~layL~~~~~~~~~AL~~~ekl  195 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEA  195 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHH
Confidence            1222222 234554466666666

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.41  E-value=7.1e-06  Score=68.17  Aligned_cols=102  Identities=11%  Similarity=0.012  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      .|..+-..+...|++++|+..|++.+..|-..   .-...++..+|.+|. .|++++|+.+|++.+..|+.....   ..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~---~d  218 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA---AD  218 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch---hH
Confidence            34444444455688888888888888877432   234566778888888 788888888888888888765433   35


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      ++..+|.++..+|++++|...|++.++.+
T Consensus       219 Al~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            67788888888888888888888877654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.37  E-value=0.00017  Score=63.56  Aligned_cols=194  Identities=11%  Similarity=0.063  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .+.....-|.+....|++++|.....++.+.    .+.  -...+.-.+.+.. .|+++.|.++|++|.+..++..   .
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~---~  153 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ---L  153 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch---H
Confidence            3444455666666679999888666654432    222  2333455566645 7999999999999986544322   1


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC----
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR----  162 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~----  162 (233)
                      .  .....+.++...|++++|+..+++..+..      +....++..++.+|...||+++|.+.+.+.........    
T Consensus       154 ~--~~l~~a~l~l~~g~~~~Al~~l~~~~~~~------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~  225 (398)
T PRK10747        154 P--VEITRVRIQLARNENHAARHGVDKLLEVA------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA  225 (398)
T ss_pred             H--HHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            1  22234889999999999999999887642      33345678889999999999999977766552211100    


Q ss_pred             ----------------------------------chHHHHHHHHHHHH-hcCCHHHHHHHHhhcccccchHHHHHHhccC
Q 026767          163 ----------------------------------SDQNRCATKLISAY-TEGDVEEIKRVAQSSAISNLDHVIIKLARKL  207 (233)
Q Consensus       163 ----------------------------------~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~~~~ld~~~~~l~~~l  207 (233)
                                                        .....+...++.++ ..|+.++|...+++..-..-++....+-..+
T Consensus       226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l  305 (398)
T PRK10747        226 MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL  305 (398)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc
Confidence                                              00122334456666 6899999999998884355566666666666


Q ss_pred             CCCchh-hhhhh
Q 026767          208 PTGDVS-ALKKA  218 (233)
Q Consensus       208 ~~~~~~-~~~~~  218 (233)
                      ..++.. .++..
T Consensus       306 ~~~~~~~al~~~  317 (398)
T PRK10747        306 KTNNPEQLEKVL  317 (398)
T ss_pred             cCCChHHHHHHH
Confidence            555533 44444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=1.4e-05  Score=70.22  Aligned_cols=163  Identities=11%  Similarity=0.092  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      -.|.++.--|..+...|++-.|.+-+++++.+.....++      |..+|.+|. ..+.++-...|.+|..+-++..   
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~---  394 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL------YIKRAAAYADENQSEKMWKDFNKAEDLDPENP---  394 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC---
Confidence            457888888999999999999999999999998776665      888999999 7999999999999999888754   


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchH
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQ  165 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e  165 (233)
                         .++..-|.++.-+++|++|+.-|++++.+      .+..+..|..++.+..+++.+.++...|+++.  ..|....|
T Consensus       395 ---dvYyHRgQm~flL~q~e~A~aDF~Kai~L------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k--kkFP~~~E  463 (606)
T KOG0547|consen  395 ---DVYYHRGQMRFLLQQYEEAIADFQKAISL------DPENAYAYIQLCCALYRQHKIAESMKTFEEAK--KKFPNCPE  463 (606)
T ss_pred             ---chhHhHHHHHHHHHHHHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCch
Confidence               47888899999999999999999999976      45556778889999999999999999999986  22222233


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          166 NRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       166 ~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                        +-.-.++++ .+++++.|.+....+
T Consensus       464 --vy~~fAeiLtDqqqFd~A~k~YD~a  488 (606)
T KOG0547|consen  464 --VYNLFAEILTDQQQFDKAVKQYDKA  488 (606)
T ss_pred             --HHHHHHHHHhhHHhHHHHHHHHHHH
Confidence              333445556 678777777776666

>TIGR00540 hemY_coli hemY protein

Probab=98.36  E-value=3.3e-05  Score=68.32  Aligned_cols=58  Identities=14%  Similarity=0.158  Sum_probs=38.3

Q ss_pred             HhHHHHHHHHHhhCCHHHHHHHHHH--hhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          129 KAYLSAIIVYLYANDFKQAEKCYND--CSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       129 ~~~~~lg~~~~~~gd~~~A~~~~~~--al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..+..+|.++...|++++|.++|++  ++...   +.  ......|++.+ ..|+.++|.++|+++
T Consensus       336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~---p~--~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQ---LD--ANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4557778888888888888888884  33221   11  12234777777 678888888877765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.36  E-value=5.5e-05  Score=66.66  Aligned_cols=185  Identities=15%  Similarity=0.061  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      .+..++.+....|++++|.+++.+|.+..   .+.. .+ .....+.++. .|++++|++.+++..+..+...      .
T Consensus       120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~-~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~------~  188 (398)
T PRK10747        120 NYLLAAEAAQQRGDEARANQHLERAAELA---DNDQ-LP-VEITRVRIQLARNENHAARHGVDKLLEVAPRHP------E  188 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---Ccch-HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH------H
Confidence            35555666577999999999999997543   2211 12 2223377777 7999999999999988776532      4


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHh-------------------H----------------c-cCcchHHHhHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAAD-------------------K----------------C-NATNSQCKAYLS  133 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------~----------------~-~~~~~~a~~~~~  133 (233)
                      ++.-++.+|...|++++|++.+.+......                   .                . ...+........
T Consensus       189 al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~  268 (398)
T PRK10747        189 VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVA  268 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHH
Confidence            778889999999999999977776552100                   0                0 011123345677


Q ss_pred             HHHHHHhhCCHHHHHHHHHHhhcCCC----------C--C---------------CchHHHHHHHHHHHH-hcCCHHHHH
Q 026767          134 AIIVYLYANDFKQAEKCYNDCSQVDA----------F--L---------------RSDQNRCATKLISAY-TEGDVEEIK  185 (233)
Q Consensus       134 lg~~~~~~gd~~~A~~~~~~al~~~~----------~--~---------------~~~e~~~l~~L~~a~-~~gd~~~a~  185 (233)
                      ++..+...|+..+|.+.+++++..+.          .  .               .+.....+..+|+.+ ..+++++|+
T Consensus       269 ~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~  348 (398)
T PRK10747        269 MAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEAS  348 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            88999999999999999999873211          0  0               123344666778877 889999999


Q ss_pred             HHHhhcccccchH-HHHHHhcc
Q 026767          186 RVAQSSAISNLDH-VIIKLARK  206 (233)
Q Consensus       186 ~~~~~~~~~~ld~-~~~~l~~~  206 (233)
                      ++++.++-...+. ....++..
T Consensus       349 ~~le~al~~~P~~~~~~~La~~  370 (398)
T PRK10747        349 LAFRAALKQRPDAYDYAWLADA  370 (398)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHH
Confidence            9999994333333 33555543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.34  E-value=2.1e-05  Score=57.67  Aligned_cols=102  Identities=17%  Similarity=0.127  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      +.+.++.=|.+..+.|+.+.|++.|.+|+.+.-      ..+.+|+|-+..+. +|+.++|+.-+.+|+++.-..+  +.
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t--rt  113 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAP------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT--RT  113 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc--hH
Confidence            344455555555556666666666666655541      23455556666655 5666666666666665554332  23


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      +..++..-|.+|..+|+-+.|..-|+.+..+
T Consensus       114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            3344555555555566666666555555543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.33  E-value=1.7e-05  Score=65.92  Aligned_cols=100  Identities=15%  Similarity=0.091  Sum_probs=83.3

Q ss_pred             HHHHHHHHHh-h-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           50 DALAKAARAL-E-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        50 ~~l~~lg~~~-~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      ....+.|..+ . .|++++|+..|++.+..++....   ...++..+|.+|...|+|++|+..|++++..+.   +....
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~---a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY---QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcch
Confidence            4555565544 3 69999999999999999987643   335789999999999999999999999997653   34556


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ..+++.+|.++..+|++.+|...|++.+
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi  244 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVI  244 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6788999999999999999999999987

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.31  E-value=7.5e-05  Score=69.67  Aligned_cols=166  Identities=13%  Similarity=0.106  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ....+...|+...-.|++++|...+.+.+..-      .....+|.-+|.||+ +|+.++++.....|.-+-+..-    
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~----  207 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY----  207 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh----
Confidence            34556666676666799999999999987763      345677999999999 7999999999998887766543    


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                        .-+..++....++|.+++|+-+|.+|+..      .+..-..+..-..+|..+|++..|...|.+.+......+....
T Consensus       208 --e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~  279 (895)
T KOG2076|consen  208 --ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI  279 (895)
T ss_pred             --HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH
Confidence              35678999999999999999999999964      2233455678889999999999999999998744332222222


Q ss_pred             HHHHH-HHHHH-hcCCHHHHHHHHhhc
Q 026767          167 RCATK-LISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~-L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..+.. .+..+ ..++.+.|...+..+
T Consensus       280 ~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  280 EDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            22222 24445 677788888888887

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.31  E-value=3.3e-05  Score=73.69  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=118.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYR   92 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~   92 (233)
                      .+..++...|+.++|+.++++++      .........+..+|.++. .|++++|++.|+++++..+...      .++.
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~------~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~------~~l~  140 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQ------SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP------DLIS  140 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHH
Confidence            55677777899999999999998      111234455666788999 7999999999999999888652      3556


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 026767           93 AATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKL  172 (233)
Q Consensus        93 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L  172 (233)
                      .++.++...+++++|++.++++.....     .  ...+..++.++...+++.+|++.+++++...    +....++..+
T Consensus       141 gLa~~y~~~~q~~eAl~~l~~l~~~dp-----~--~~~~l~layL~~~~~~~~~AL~~~ekll~~~----P~n~e~~~~~  209 (822)
T PRK14574        141 GMIMTQADAGRGGVVLKQATELAERDP-----T--VQNYMTLSYLNRATDRNYDALQASSEAVRLA----PTSEEVLKNH  209 (822)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHhcccCc-----c--hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC----CCCHHHHHHH
Confidence            778999999999999999998886421     1  2233444555555778878999999998443    1234566666


Q ss_pred             HHHH-hcCCHHHHHHHHhhc--ccccchH
Q 026767          173 ISAY-TEGDVEEIKRVAQSS--AISNLDH  198 (233)
Q Consensus       173 ~~a~-~~gd~~~a~~~~~~~--~~~~ld~  198 (233)
                      ..+. ..|-...|.+..++.  .|+.-+.
T Consensus       210 ~~~l~~~~~~~~a~~l~~~~p~~f~~~~~  238 (822)
T PRK14574        210 LEILQRNRIVEPALRLAKENPNLVSAEHY  238 (822)
T ss_pred             HHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence            6666 678888888888776  6665553

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.29  E-value=8.9e-05  Score=72.58  Aligned_cols=94  Identities=9%  Similarity=0.072  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA  169 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l  169 (233)
                      +++.+...|.+.|++++|..+|++...    .+..+. ..+|+.+...|.+.|++++|.+.|++..... +  .......
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~----~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i--~Pd~~Ty  757 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKS----IKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLG-L--CPNTITY  757 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C--CCCHHHH
Confidence            344444444444444444444443321    111111 2234555555555555555555555433110 0  0112233


Q ss_pred             HHHHHHH-hcCCHHHHHHHHhhc
Q 026767          170 TKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       170 ~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..|+.++ ..|+.+.|...+.+.
T Consensus       758 ~sLL~a~~k~G~le~A~~l~~~M  780 (1060)
T PLN03218        758 SILLVASERKDDADVGLDLLSQA  780 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHH
Confidence            4444445 456666666555555

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.29  E-value=6.7e-05  Score=70.75  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKAS   36 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~   36 (233)
                      +|+.+...|.+.|++++|+..|++..
T Consensus       191 t~n~li~~~~~~g~~~~A~~lf~~M~  216 (697)
T PLN03081        191 SWGTIIGGLVDAGNYREAFALFREMW  216 (697)
T ss_pred             eHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            35666666777777777777777653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.28  E-value=0.00016  Score=68.20  Aligned_cols=95  Identities=13%  Similarity=0.097  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA  169 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l  169 (233)
                      +++.+...|.+.|+.++|+++|++...    .|..+. ..+|..+...+...|+.++|.+.|+..........  .....
T Consensus       393 t~n~lI~~y~~~G~~~~A~~lf~~M~~----~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y  465 (697)
T PLN03081        393 SWNALIAGYGNHGRGTKAVEMFERMIA----EGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHY  465 (697)
T ss_pred             eHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--Cccch
Confidence            566677777777777777777776553    233333 33567777777777888888777777653222211  12234


Q ss_pred             HHHHHHH-hcCCHHHHHHHHhhc
Q 026767          170 TKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       170 ~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .-+++.+ +.|+.++|.+.+++.
T Consensus       466 ~~li~~l~r~G~~~eA~~~~~~~  488 (697)
T PLN03081        466 ACMIELLGREGLLDEAYAMIRRA  488 (697)
T ss_pred             HhHHHHHHhcCCHHHHHHHHHHC
Confidence            4566666 678888888887765

>TIGR00540 hemY_coli hemY protein

Probab=98.27  E-value=8.9e-05  Score=65.57  Aligned_cols=130  Identities=15%  Similarity=0.088  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +.....-|.+-...|+++.|.....++.+..   .+   -...+.-.|.+.. +|+++.|.+++.++.+.++..+-    
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~---~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l----  153 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA---AE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI----  153 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC---CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch----
Confidence            4444555666666888888888887766542   11   1233445567666 68888888888888765544321    


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                       .+....+.++...|++++|...+++..+..      +....++..++.++...||+++|.+.+.+..
T Consensus       154 -~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~  214 (409)
T TIGR00540       154 -LVEIARTRILLAQNELHAARHGVDKLLEMA------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMA  214 (409)
T ss_pred             -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence             123334777888888888888888777541      2233567788888888888888877777665

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.24  E-value=3.3e-05  Score=56.70  Aligned_cols=102  Identities=19%  Similarity=0.197  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      ...+..-|.++. -|+.+.|++.|.+|+.+.++.      +.+|+|-+..+.-+|+.++|++-+.+++++.-  +..+..
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag--~~trta  114 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELAG--DQTRTA  114 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcC--ccchHH
Confidence            344555677777 699999999999999999763      46899999999999999999999999999853  345666


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      ..++..-|.+|..+|+-+.|+.-|+.+..+-
T Consensus       115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            7788999999999999999999999987553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.23  E-value=9.4e-06  Score=52.31  Aligned_cols=58  Identities=10%  Similarity=0.072  Sum_probs=50.4

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           93 AATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        93 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      .+|..+...|+|++|+..|++++..      .+....+++.+|.++..+|++++|...|++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5788999999999999999999853      355677899999999999999999999999873

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=3.3e-05  Score=66.46  Aligned_cols=139  Identities=10%  Similarity=0.027  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc--h-------HHHHHHHHHHHHhh-hCCHHHHHHHHHHH
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRS--Q-------PASDALAKAARALE-DAVPEDAIQLYTDA   74 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~--~-------~~a~~l~~lg~~~~-~g~~~~A~~~~~~A   74 (233)
                      ...+|.-...-|+.|...|+|..|...|++|+.........  .       ---.++.|++.++. ..+|.+|+++..++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            34677888889999999999999999999999987632221  1       11236889999999 79999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHH-HHHHHHH
Q 026767           75 CIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQ-AEKCYND  153 (233)
Q Consensus        75 l~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~-A~~~~~~  153 (233)
                      |++-...      ..+|.+-|.++..+|+|+.|+..|++++.+-     +.+ -.+...|..|..+.-++.. ..+.|..
T Consensus       284 Le~~~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~N-ka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  284 LELDPNN------VKALYRRGQALLALGEYDLARDDFQKALKLE-----PSN-KAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             HhcCCCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9876542      3689999999999999999999999999862     222 2233444455444444433 3556665


Q ss_pred             hh
Q 026767          154 CS  155 (233)
Q Consensus       154 al  155 (233)
                      ..
T Consensus       352 mF  353 (397)
T KOG0543|consen  352 MF  353 (397)
T ss_pred             Hh
Confidence            54

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.22  E-value=0.00017  Score=70.64  Aligned_cols=59  Identities=12%  Similarity=0.071  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +|..+...+...|++++|.+.|++..... +  .........|+.+| ..|+.+.|...+++-
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G-~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQG-I--KLGTVSYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            34444444444444444444444443110 0  01123445555555 556666665555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.15  E-value=5.6e-05  Score=72.02  Aligned_cols=134  Identities=13%  Similarity=-0.007  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC--
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK--   83 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~--   83 (233)
                      +-..++..+..+|...+++++|++.++.+++..      ......+.-.|.++. .+++..+.-.  +++.++....+  
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~  100 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH------KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA  100 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence            446788999999989999999999999877753      223333444444444 4555444443  44444443321  


Q ss_pred             -----------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHH
Q 026767           84 -----------EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYN  152 (233)
Q Consensus        84 -----------~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~  152 (233)
                                 ....-.++..+|.+|-++|++++|...|++++.+      .+..+.+++++|..+... ++++|+.++.
T Consensus       101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~  173 (906)
T PRK14720        101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSYEEE-DKEKAITYLK  173 (906)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence                       1111247889999999999999999999999976      256677899999999999 9999999999


Q ss_pred             Hhh
Q 026767          153 DCS  155 (233)
Q Consensus       153 ~al  155 (233)
                      +|+
T Consensus       174 KAV  176 (906)
T PRK14720        174 KAI  176 (906)
T ss_pred             HHH
Confidence            987

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=98.14  E-value=7.5e-05  Score=52.12  Aligned_cols=76  Identities=8%  Similarity=-0.087  Sum_probs=48.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHH
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQ---MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAII  136 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~---~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~  136 (233)
                      .|++.+|++.+.+..++....+...   ....++.+++.++...|++++|+..+++++.+.++.++....+.++..+..
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~   89 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN   89 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            4667777777777776666665433   344456667777777777777777777777777777766666555544433

>PLN03077 Protein ECB2; Provisional

Probab=98.12  E-value=0.00046  Score=66.66  Aligned_cols=95  Identities=8%  Similarity=0.056  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA  169 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l  169 (233)
                      +++.+...|.+.|+.++|+++|++...    .|..+. ..+|..+...+.+.|+.++|.++|++........+  .....
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~----~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P--~~~~y  628 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVE----SGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP--NLKHY  628 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC--chHHH
Confidence            577777888888888888888887663    233333 33577777788888999999999988753333222  22455


Q ss_pred             HHHHHHH-hcCCHHHHHHHHhhc
Q 026767          170 TKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       170 ~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .-+++++ +.|+.++|.+.+++-
T Consensus       629 ~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        629 ACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHC
Confidence            6777777 789999999988875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=98.12  E-value=0.00014  Score=50.76  Aligned_cols=78  Identities=15%  Similarity=0.093  Sum_probs=69.5

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCch---HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQ---PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATN   96 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~---~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~   96 (233)
                      ..|++.+|++.+.+..+.....+...   ....++.++|.++. .|++++|+..+++|+.+.++.+|......++..+..
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~   89 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN   89 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            37999999999999999998888876   67778889999999 799999999999999999999999988888877766


Q ss_pred             HH
Q 026767           97 VY   98 (233)
Q Consensus        97 ~~   98 (233)
                      +.
T Consensus        90 l~   91 (94)
T PF12862_consen   90 LL   91 (94)
T ss_pred             Hh
Confidence            54

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.11  E-value=0.0001  Score=68.83  Aligned_cols=135  Identities=14%  Similarity=0.122  Sum_probs=106.2

Q ss_pred             chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767           45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      +......+.+++..|. .|.|.+|+.++........-..     +.++.++|.+|..+|.|++|+++|++++.+      
T Consensus       410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~-----~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~------  478 (895)
T KOG2076|consen  410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN-----AFVWYKLARCYMELGEYEEAIEFYEKVLIL------  478 (895)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc-----hhhhHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            6677888999999999 6999999999998876554332     458999999999999999999999999975      


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCC---C-CCchHHHHHHHHHHHH-hcCCHHHHHHHHhh
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDA---F-LRSDQNRCATKLISAY-TEGDVEEIKRVAQS  190 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~---~-~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~  190 (233)
                      .+..-.+...|+.++..+|++++|.+.++.-. -.+.   . .-+.+.+++....+.+ ..|+.+.+......
T Consensus       479 ~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~  551 (895)
T KOG2076|consen  479 APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST  551 (895)
T ss_pred             CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            23334567899999999999999999998854 1211   1 2367777888888877 78998887655443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.08  E-value=0.00011  Score=67.62  Aligned_cols=132  Identities=19%  Similarity=0.085  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      -+.+..++..+...+..++|.-|..+|..++      ...++++...|.++. .|...+|.+.|..|+.+-++.      
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------  717 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------  717 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------
Confidence            3456678888888999999999999998887      467889999999999 899999999999999887753      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           88 FDLYRAATNVYIKLEKYADAAT--FLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      ..++..+|.++.+.|+..-|..  ++..++.+      .+....+++.+|.++..+||..+|.++|.-++++.
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRL------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            2578889999999997777776  88888764      44455689999999999999999999999998553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.07  E-value=9.3e-06  Score=52.33  Aligned_cols=56  Identities=18%  Similarity=0.158  Sum_probs=27.2

Q ss_pred             HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      |..+. .|++++|+..|+++++..+.      -..++..+|.++..+|++++|+.+|++++.+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44444 45555555555555544432      1234555555555555555555555555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=6.7e-05  Score=64.72  Aligned_cols=164  Identities=15%  Similarity=0.108  Sum_probs=112.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH------H
Q 026767           16 AALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA------F   88 (233)
Q Consensus        16 g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~------~   88 (233)
                      +.++-..+++++|..---.-+.+    ..  .-+.++.--|.++. .++.+.|+.+|++++.+-+...+...+      -
T Consensus       176 a~cl~~~~~~~~a~~ea~~ilkl----d~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~l  249 (486)
T KOG0550|consen  176 AECLAFLGDYDEAQSEAIDILKL----DA--TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKL  249 (486)
T ss_pred             hhhhhhcccchhHHHHHHHHHhc----cc--chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHH
Confidence            34455677777776533322222    11  22344455577777 899999999999999988765532222      2


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC  168 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~  168 (233)
                      .....-|.-..+.|+|.+|.++|.++|.+-.  ......++.|.+.+.|..++|+..+|+.-.++++.+..    .--..
T Consensus       250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP--~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~----syika  323 (486)
T KOG0550|consen  250 EVKKERGNDAFKNGNYRKAYECYTEALNIDP--SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS----SYIKA  323 (486)
T ss_pred             HHHHhhhhhHhhccchhHHHHHHHHhhcCCc--cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH----HHHHH
Confidence            3455668888999999999999999998743  35567789999999999999999999999999986642    11233


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          169 ATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +..-+.++ ..++++.|.+-++.+
T Consensus       324 ll~ra~c~l~le~~e~AV~d~~~a  347 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAVEDYEKA  347 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455 456666666555555

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.05  E-value=0.0001  Score=70.25  Aligned_cols=165  Identities=11%  Similarity=0.065  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      .++..+|.+|..+|++++|...|++++++-      ..-+.+++++|..|. . +.++|++++.+|+..+-........-
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~  189 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIE  189 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHH
Confidence            355555555555555555555555555553      234455555555555 4 55555555555555544333222221


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC  168 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~  168 (233)
                      ..+..+-.  ....+++.=....++.+.   ..+ .......+.-+-.+|...++++++...+...+....-    ...+
T Consensus       190 e~W~k~~~--~~~~d~d~f~~i~~ki~~---~~~-~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~----n~~a  259 (906)
T PRK14720        190 EIWSKLVH--YNSDDFDFFLRIERKVLG---HRE-FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK----NNKA  259 (906)
T ss_pred             HHHHHHHh--cCcccchHHHHHHHHHHh---hhc-cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc----chhh
Confidence            11111111  011111111111111110   111 1111222344447788888899999999988855432    2344


Q ss_pred             HHHHHHHHh--cCCHHHHHHHHhhc
Q 026767          169 ATKLISAYT--EGDVEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~~a~~--~gd~~~a~~~~~~~  191 (233)
                      +..|++.|.  -++...+.++++-.
T Consensus       260 ~~~l~~~y~~kY~~~~~~ee~l~~s  284 (906)
T PRK14720        260 REELIRFYKEKYKDHSLLEDYLKMS  284 (906)
T ss_pred             HHHHHHHHHHHccCcchHHHHHHHh
Confidence            667777762  45666777777666

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.04  E-value=0.00017  Score=63.18  Aligned_cols=117  Identities=18%  Similarity=0.194  Sum_probs=88.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 026767           17 ALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAAT   95 (233)
Q Consensus        17 ~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg   95 (233)
                      ..+...+++++|+..+++-..-     ++.    +..-++.++. .++..+|++.+.+++...++.      +..+.-.+
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~-----~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa  241 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRER-----DPE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQA  241 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhc-----CCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence            4445567777777777764332     232    3334788877 678889999999999554433      56888899


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767           96 NVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC  154 (233)
Q Consensus        96 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a  154 (233)
                      .+++..++|+.|+.+.+++..+      .+..-.++..|+.+|...|+++.|+-.++-+
T Consensus       242 ~fLl~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  242 EFLLSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999999999999999999876      4556678888999999999999998877754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.02  E-value=9e-05  Score=67.89  Aligned_cols=123  Identities=11%  Similarity=0.030  Sum_probs=92.3

Q ss_pred             HHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH
Q 026767           53 AKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY  131 (233)
Q Consensus        53 ~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~  131 (233)
                      ..+|.... ++++.++.++++.++++..-.      -.++..+|.+..+++++..|.++|.+.+.+      .++.+.++
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~eaW  556 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAEAW  556 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchhhh
Confidence            33444444 589999999999999987742      358999999999999999999999999865      55667789


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          132 LSAIIVYLYANDFKQAEKCYNDCSQVDAFL-RSDQNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       132 ~~lg~~~~~~gd~~~A~~~~~~al~~~~~~-~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      +|+...|...|+..+|...+.+++.....+ ..+|...+.    +..-|..+.|.+++.+-
T Consensus       557 nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlv----svdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  557 NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLV----SVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhh----hhhcccHHHHHHHHHHH
Confidence            999999999999999999999998554221 122322211    22457777777666655

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=98.00  E-value=0.00052  Score=53.66  Aligned_cols=128  Identities=14%  Similarity=0.075  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcc
Q 026767           25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEK  103 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~  103 (233)
                      .++-++-++.-++-++.+.--.....++..+|..|. .|+.+.|++.|.++.+.....+.   ......++-.+.+..++
T Consensus        12 ~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~---~id~~l~~irv~i~~~d   88 (177)
T PF10602_consen   12 NAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH---KIDMCLNVIRVAIFFGD   88 (177)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHHHhCC
Confidence            445566677777888877777788899999999999 79999999999998887555443   34577788888999999


Q ss_pred             HHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          104 YADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       104 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      +.....+..++-.+....++.....+.-..-|+.++..++|.+|-+.|-.+.
T Consensus        89 ~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen   89 WSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence            9999999999998887766655555666778888999999999999999986

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.00031  Score=57.19  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=71.3

Q ss_pred             CCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767           43 GRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN  122 (233)
Q Consensus        43 g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  122 (233)
                      .||...+.--.+++.+-.+|..-+||+..-.=++.|....      +++..++++|+..|+|.+|.-+|++.+-+     
T Consensus       115 ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~------EAW~eLaeiY~~~~~f~kA~fClEE~ll~-----  183 (289)
T KOG3060|consen  115 DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ------EAWHELAEIYLSEGDFEKAAFCLEELLLI-----  183 (289)
T ss_pred             cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhHhHHHHHHHHHHHHHHc-----
Confidence            4455555545566666556776777777777777666432      56777888899999999999999888743     


Q ss_pred             CcchHHHhHHHHHHHHHhhC---CHHHHHHHHHHhhcCC
Q 026767          123 ATNSQCKAYLSAIIVYLYAN---DFKQAEKCYNDCSQVD  158 (233)
Q Consensus       123 ~~~~~a~~~~~lg~~~~~~g---d~~~A~~~~~~al~~~  158 (233)
                       .+.....+..++.++.-+|   ++.-|+++|.+++.+.
T Consensus       184 -~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  184 -QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             -CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence             2333345566777766655   6778888998888654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.99  E-value=3.5e-05  Score=67.68  Aligned_cols=65  Identities=12%  Similarity=0.041  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH-HhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC-KAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ..++|+|.+|..+|+|++|+..|++++++.    .....+ .+++++|.+|..+|++++|+.++++++.+
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567778888888888888888888877652    122222 45778888888888888888888887754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.98  E-value=2.6e-05  Score=68.45  Aligned_cols=68  Identities=13%  Similarity=-0.003  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIM   77 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~   77 (233)
                      .-+.++.|+|.+|...|++++|+.+|++|+++.-   +...+..++.|+|.+|. .|++++|++++++|+++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P---d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP---NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3467788888888888888888888888888741   12122367888888888 78888888888888876

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.95  E-value=0.0012  Score=47.73  Aligned_cols=107  Identities=13%  Similarity=0.012  Sum_probs=79.1

Q ss_pred             HHHHHHHHHH---hhhCCHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767           49 SDALAKAARA---LEDAVPEDAIQLYTDACIMLEEDD------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD  119 (233)
Q Consensus        49 a~~l~~lg~~---~~~g~~~~A~~~~~~Al~~~~~~g------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~  119 (233)
                      +.+|.-++..   +..|.|++|...|++|+++.+...      ....-+.|+-.|+..+..+|+|++++..-.+++..+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            4444444443   335999999999999999988764      3444567999999999999999999999999999887


Q ss_pred             HccCcc-hHH----HhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          120 KCNATN-SQC----KAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       120 ~~~~~~-~~a----~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      +-|..+ ..+    .+.++-+.....+|+.++|...|+.+-
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            655432 222    234778888899999999999999985

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PLN03077 Protein ECB2; Provisional

Probab=97.95  E-value=0.0011  Score=64.15  Aligned_cols=123  Identities=11%  Similarity=0.014  Sum_probs=81.5

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK  129 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~  129 (233)
                      +|+.+...|. .|+.++|++.|++..+    .|-.... .++..+-..+.+.|++++|..+|++....+   +..+. ..
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~----~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi~P~-~~  626 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVE----SGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKY---SITPN-LK  626 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHh---CCCCc-hH
Confidence            3556666666 6888888888887553    2322222 367777778999999999999999876432   33333 35


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHH
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVA  188 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~  188 (233)
                      .|..++.++.+.|++++|.+.+++.-..+      ...+...|..++ ..|+.+.++.+.
T Consensus       627 ~y~~lv~~l~r~G~~~eA~~~~~~m~~~p------d~~~~~aLl~ac~~~~~~e~~e~~a  680 (857)
T PLN03077        627 HYACVVDLLGRAGKLTEAYNFINKMPITP------DPAVWGALLNACRIHRHVELGELAA  680 (857)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCChHHHHHHH
Confidence            78999999999999999999998852111      133444455555 345555544443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.94  E-value=0.0011  Score=58.36  Aligned_cols=136  Identities=15%  Similarity=0.059  Sum_probs=98.9

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK  129 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~  129 (233)
                      +....+..+. .|.+++|+..+..-   .....+..   ..+.-.++++.+.+++++|.+.+++++.+      .+...-
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L---~~~~P~N~---~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~~~~  375 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPL---IAAQPDNP---YYLELAGDILLEANKAKEAIERLKKALAL------DPNSPL  375 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHH---HHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCccH
Confidence            3444455555 68888888888873   33333222   24567899999999999999999999975      233344


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchHHHHHH
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDHVIIKL  203 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~~~~l  203 (233)
                      ...++|.+++..|++.+|+..+.+++ ..+..     .....-|+++| +.|+..++..+..+.  ....+..++.-+
T Consensus       376 l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-----p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l  448 (484)
T COG4783         376 LQLNLAQALLKGGKPQEAIRILNRYLFNDPED-----PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFL  448 (484)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-----chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            55899999999999999999999987 55544     34556788888 788888888888877  666666664433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.88  E-value=3.2e-05  Score=43.88  Aligned_cols=31  Identities=13%  Similarity=0.117  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      ++.+||.+|.++|+|++|+++|++++.+..+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            3567777777777777777777777766544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.87  E-value=0.00062  Score=52.08  Aligned_cols=105  Identities=14%  Similarity=0.077  Sum_probs=79.8

Q ss_pred             cCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767           42 CGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        42 ~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      .|=+...-......|.-+. .|++++|...|+--+.+-.-  +    ..-+..+|.++..+++|.+|+..|-.+..+-. 
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-  102 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY--N----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-  102 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence            3444455555666666666 79999999998866553221  1    23578899999999999999999999987643 


Q ss_pred             ccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       121 ~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                       ++++    ..+..|.|++.+|+...|+.+|+.++..+
T Consensus       103 -~dp~----p~f~agqC~l~l~~~~~A~~~f~~a~~~~  135 (165)
T PRK15331        103 -NDYR----PVFFTGQCQLLMRKAAKARQCFELVNERT  135 (165)
T ss_pred             -CCCC----ccchHHHHHHHhCCHHHHHHHHHHHHhCc
Confidence             3332    36789999999999999999999998644

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.86  E-value=0.00074  Score=61.46  Aligned_cols=116  Identities=14%  Similarity=-0.010  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---C-----CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 026767           25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-D---A-----VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAAT   95 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---g-----~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg   95 (233)
                      +.+|+++|++|+++--      .-+.++..++.++. .   +     +...+.+...+++.+-....+    ..++.-+|
T Consensus       358 ~~~A~~lle~Ai~ldP------~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~----~~~~~ala  427 (517)
T PRK10153        358 LNKASDLLEEILKSEP------DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL----PRIYEILA  427 (517)
T ss_pred             HHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC----hHHHHHHH
Confidence            6688888888888742      22444444444444 2   1     122333333333332111111    24667778


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           96 NVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        96 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      .++...|++++|...+++|+.+-      +. +.+|..+|.++...|++++|...|++|+.+
T Consensus       428 ~~~~~~g~~~~A~~~l~rAl~L~------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        428 VQALVKGKTDEAYQAINKAIDLE------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcC------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            88888899999999999998762      22 467899999999999999999999999854

>PLN02789 farnesyltranstransferase

Probab=97.86  E-value=0.00094  Score=57.15  Aligned_cols=126  Identities=10%  Similarity=-0.011  Sum_probs=98.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC-CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DA-VPEDAIQLYTDACIMLEEDDKEQMAFDLY   91 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g-~~~~A~~~~~~Al~~~~~~g~~~~~~~~l   91 (233)
                      -+-.++...+++++|+..+.+++.+-      ..-..++..-+.++. .| ++++++.++.+++...+..      ..++
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~ln------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn------yqaW  109 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRLN------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN------YQIW  109 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHC------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc------hHHh
Confidence            33344666889999999999999873      234567888888888 66 6899999999999876643      2467


Q ss_pred             HHHHHHHHHhccH--HHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           92 RAATNVYIKLEKY--ADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        92 ~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      +..+.++..+|+.  .++++++.+++.+      .+....++...+.+....|++.+|++++.+++..
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSL------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            7788888888874  7889999888865      2344567888999999999999999999999843

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.84  E-value=5.9e-05  Score=42.76  Aligned_cols=33  Identities=9%  Similarity=0.309  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECG   43 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g   43 (233)
                      ++.++|.+|..+|++++|+++|++++.+....+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            456677777777777777777777766655444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.84  E-value=0.0029  Score=51.99  Aligned_cols=141  Identities=9%  Similarity=-0.117  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC---------------C---HHHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DA---------------V---PEDA   67 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g---------------~---~~~A   67 (233)
                      -+..+...+|.+|.+.+++++|+.+|++.+..+-...   ....++..+|.++. .+               |   ..+|
T Consensus        67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A  143 (243)
T PRK10866         67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAA  143 (243)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHH
Confidence            4456677899999999999999999999999985443   45677777777642 21               2   2468


Q ss_pred             HHHHHHHHHHHHhcCChHHH-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHH
Q 026767           68 IQLYTDACIMLEEDDKEQMA-----------FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAII  136 (233)
Q Consensus        68 ~~~~~~Al~~~~~~g~~~~~-----------~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~  136 (233)
                      +..+++-++.|++..-...+           +.--..+|..|.+.|+|..|+.-++..++-+   .+......++..++.
T Consensus       144 ~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y---p~t~~~~eal~~l~~  220 (243)
T PRK10866        144 FRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY---PDTQATRDALPLMEN  220 (243)
T ss_pred             HHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC---CCCchHHHHHHHHHH
Confidence            88999999988876522221           1222356788999999999999999888654   455666778899999


Q ss_pred             HHHhhCCHHHHHHHHHH
Q 026767          137 VYLYANDFKQAEKCYND  153 (233)
Q Consensus       137 ~~~~~gd~~~A~~~~~~  153 (233)
                      .|..+|..++|......
T Consensus       221 ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        221 AYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHcCChHHHHHHHHH
Confidence            99999999999887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.84  E-value=0.0038  Score=49.78  Aligned_cols=137  Identities=15%  Similarity=0.040  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-----------CCHHHHHHHHHHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-----------AVPEDAIQLYTDA   74 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-----------g~~~~A~~~~~~A   74 (233)
                      -+..+...+|.++...|++++|+..|++-+..|-..-   ....++..+|.++. .           +...+|+..|+.-
T Consensus        40 ~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l  116 (203)
T PF13525_consen   40 YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL  116 (203)
T ss_dssp             THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence            3567788899999999999999999999998885443   45566777777654 2           3356899999999


Q ss_pred             HHHHHhcCChHHH-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCC
Q 026767           75 CIMLEEDDKEQMA-----------FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAND  143 (233)
Q Consensus        75 l~~~~~~g~~~~~-----------~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd  143 (233)
                      +.-|++......+           +.--..+|..|.+.|.|..|+..++.+++-+   .+......++..++.+|..+|.
T Consensus       117 i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~  193 (203)
T PF13525_consen  117 IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGL  193 (203)
T ss_dssp             HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCC
Confidence            9999987743322           2223446889999999999999999888754   4455566788999999999999


Q ss_pred             HHHHHH
Q 026767          144 FKQAEK  149 (233)
Q Consensus       144 ~~~A~~  149 (233)
                      ...|..
T Consensus       194 ~~~a~~  199 (203)
T PF13525_consen  194 KQAADT  199 (203)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            885543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.82  E-value=0.0014  Score=59.52  Aligned_cols=133  Identities=14%  Similarity=0.144  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ...++.-++..|...|++++|+++.++|+..      .......+.--|.++. .|++.+|.++++.|..+-.+..    
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR----  262 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR----  262 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH----
Confidence            3457788899999999999999999999987      3456788999999999 7999999999999987766532    


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc-Cc-----chHHHhH-HHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN-AT-----NSQCKAY-LSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-----~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                        .+-+..+..+++.|+.++|...+.    +|.+.+ ++     ..++..| ...|.+|.+.|++..|++.|.....
T Consensus       263 --yiNsK~aKy~LRa~~~e~A~~~~~----~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  263 --YINSKCAKYLLRAGRIEEAEKTAS----LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             --HHHHHHHHHHHHCCCHHHHHHHHH----hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence              355677888899999999998654    444433 11     1123333 7889999999999999999988763

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.00039  Score=54.82  Aligned_cols=106  Identities=21%  Similarity=0.141  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..+..+..=|.-+. .|+|++|...|..|+++.+..-.... ..+|.|-|.++++++.+..|+.-+.+++++    +.  
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~r-sIly~Nraaa~iKl~k~e~aI~dcsKaiel----~p--  165 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEER-SILYSNRAAALIKLRKWESAIEDCSKAIEL----NP--  165 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHH-HHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----Cc--
Confidence            34555666676666 89999999999999999988765433 358999999999999999999999999976    22  


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCC
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDA  159 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~  159 (233)
                      .--+++..-+.+|-.+..|+.|++-|.+.+ .+|.
T Consensus       166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence            233566777889999999999999999987 4453

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.80  E-value=0.00066  Score=54.71  Aligned_cols=96  Identities=14%  Similarity=0.038  Sum_probs=76.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-------CChHHHHHHHH
Q 026767           22 LHNWREVADFYRKASELYNECG-RSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-------DKEQMAFDLYR   92 (233)
Q Consensus        22 ~g~~~eA~~~~~~A~~l~~~~g-~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-------g~~~~~~~~l~   92 (233)
                      ...+++|++.|.-|+-.+.-.+ ++...|.++.++|-+|. .|+.+....++++|++.|.+.       ........++.
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            3457899999999999988655 67788999999999999 799888888888888887753       12233445778


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           93 AATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        93 ~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      -+|.+..++|++++|..+|.+.+..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            8888999999999999988888753

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.80  E-value=0.00071  Score=61.43  Aligned_cols=127  Identities=12%  Similarity=0.109  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      ++.--|..+..+|+.++|..+...++.     +|+ ..-.||+-+|.++. ..+|++||++|+.|+.+-+..      -.
T Consensus        43 slAmkGL~L~~lg~~~ea~~~vr~glr-----~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN------~q  110 (700)
T KOG1156|consen   43 SLAMKGLTLNCLGKKEEAYELVRLGLR-----NDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN------LQ  110 (700)
T ss_pred             hHHhccchhhcccchHHHHHHHHHHhc-----cCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------HH
Confidence            344455566668888888888888876     444 34568899999999 799999999999999876542      25


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ++..++.+..++++|....+.=.+-+++      .++.-..++..++.+.-.|++..|....+...
T Consensus       111 ilrDlslLQ~QmRd~~~~~~tr~~LLql------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~  170 (700)
T KOG1156|consen  111 ILRDLSLLQIQMRDYEGYLETRNQLLQL------RPSQRASWIGFAVAQHLLGEYKMALEILEEFE  170 (700)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888888888776666654      23333456888888888899999988887776

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.0026  Score=59.58  Aligned_cols=113  Identities=14%  Similarity=0.106  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHcCCchHHHH----------HHHHHHHHhh-hCCHHHHHHHHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKAS----ELYNECGRSQPASD----------ALAKAARALE-DAVPEDAIQLYTDA   74 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~----~l~~~~g~~~~~a~----------~l~~lg~~~~-~g~~~~A~~~~~~A   74 (233)
                      +.|.+.+.-+...+|...|++||+++-    ++++-+.+..++..          .|.=.|..++ .|+.+.|+.+|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            456666666666777777777777753    33333333333333          3334477788 79999999999988


Q ss_pred             HHHHHhcC------ChHHHH---------HHHHHHHHHHHHhccHHHHHHHHHHH------HHHHhHcc
Q 026767           75 CIMLEEDD------KEQMAF---------DLYRAATNVYIKLEKYADAATFLLRW------GLAADKCN  122 (233)
Q Consensus        75 l~~~~~~g------~~~~~~---------~~l~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~  122 (233)
                      -++|....      +...++         .+-..+|+.|-..|+..+|+.+|.+|      +.++.+.+
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            87776542      111111         24457899999999999999999886      45555543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.76  E-value=0.0085  Score=55.84  Aligned_cols=187  Identities=16%  Similarity=0.105  Sum_probs=137.4

Q ss_pred             ChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcC
Q 026767            4 SPWDAAKHMESAAALAK-ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~-~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      .+...+.++..+|.++. .-.++++|..+.+++..+.++.+-.+-.-.+..-++.++.+.++..|.....++++.++..+
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~~~  133 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKAALKNLDKAIEDSETYG  133 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccC
Confidence            35667888889998876 68899999999999999998844444344555556888886555559999999999999977


Q ss_pred             ChHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-CC--
Q 026767           83 KEQMAFDLYRAA-TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-VD--  158 (233)
Q Consensus        83 ~~~~~~~~l~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~~--  158 (233)
                      ...+.- ++.-+ ..++...+++..|++.++.........+++.....+...-+.+++..+....+.+..+++.. ..  
T Consensus       134 ~~~w~~-~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~  212 (608)
T PF10345_consen  134 HSAWYY-AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL  212 (608)
T ss_pred             chhHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence            554432 33333 33333448999999999999999887788877777778888999999988888888888752 11  


Q ss_pred             CC---CCchHHHHHHHHHHHH---hcCCHHHHHHHHhhc
Q 026767          159 AF---LRSDQNRCATKLISAY---TEGDVEEIKRVAQSS  191 (233)
Q Consensus       159 ~~---~~~~e~~~l~~L~~a~---~~gd~~~a~~~~~~~  191 (233)
                      ..   .....-.++..+.+.+   ..|++..+...+++.
T Consensus       213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            11   1333444555555533   689988888888776

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.74  E-value=0.0046  Score=44.71  Aligned_cols=114  Identities=13%  Similarity=-0.002  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH
Q 026767            6 WDAAKHMESAAALAKE--LHNWREVADFYRKASELYNECGRS------QPASDALAKAARALE-DAVPEDAIQLYTDACI   76 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~--~g~~~eA~~~~~~A~~l~~~~g~~------~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~   76 (233)
                      ..++.+|..++..-++  -|-|++|..-|.+|++..+..-.-      .--|.|+..++..+. .|+|++++..-.+|+.
T Consensus         4 keVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~   83 (144)
T PF12968_consen    4 KEVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR   83 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            4567777777766553  678999999999999998654221      123567888888888 8999999999999999


Q ss_pred             HHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767           77 MLEEDDK------EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        77 ~~~~~g~------~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      +|...|.      ..+. .+..+-+..+..+|+.++|+..|+.+.++..+
T Consensus        84 YFNRRGEL~qdeGklWI-aaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   84 YFNRRGELHQDEGKLWI-AAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             HHHHH--TTSTHHHHHH-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHhhccccccccchhHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            9998773      2233 35667788888999999999999999987654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0025  Score=55.42  Aligned_cols=164  Identities=11%  Similarity=0.061  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      ..+..+...| ..+++..|+.+-++++++-    ...  ...|.--|.++. .+++++|+-.|+.|..+.+-      .-
T Consensus       302 ~wfV~~~~l~-~~K~~~rAL~~~eK~I~~~----~r~--~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL  368 (564)
T KOG1174|consen  302 HWFVHAQLLY-DEKKFERALNFVEKCIDSE----PRN--HEALILKGRLLIALERHTQAVIAFRTAQMLAPY------RL  368 (564)
T ss_pred             hhhhhhhhhh-hhhhHHHHHHHHHHHhccC----ccc--chHHHhccHHHHhccchHHHHHHHHHHHhcchh------hH
Confidence            3344443333 3677888888888887652    122  223444466666 68889998888888877642      12


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc------------------------------cCcchHHHhHHHHHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKC------------------------------NATNSQCKAYLSAIIVY  138 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~~~~~a~~~~~lg~~~  138 (233)
                      .++..+-..|...|++.+|......++..+...                              ...++-..+-+.++..+
T Consensus       369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~  448 (564)
T KOG1174|consen  369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC  448 (564)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence            577777788888888888877766655443211                              11222233446667777


Q ss_pred             HhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          139 LYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       139 ~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ...|.+..++..+++++.+..     .+.....||+.+ ..+.+..+.++...+
T Consensus       449 ~~Eg~~~D~i~LLe~~L~~~~-----D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A  497 (564)
T KOG1174|consen  449 QVEGPTKDIIKLLEKHLIIFP-----DVNLHNHLGDIMRAQNEPQKAMEYYYKA  497 (564)
T ss_pred             HhhCccchHHHHHHHHHhhcc-----ccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            777888888888887774432     244556677766 566666666666666

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.73  E-value=0.00038  Score=65.92  Aligned_cols=137  Identities=13%  Similarity=0.127  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCchHHH----------------HHHHHHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASEL--------------YNECGRSQPAS----------------DALAKAA   56 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g~~~~~a----------------~~l~~lg   56 (233)
                      .-|.+|..+|.+|+...+...|..+|++|.++              |-+..+...+-                ..+...|
T Consensus       490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG  569 (1238)
T KOG1127|consen  490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG  569 (1238)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence            45788999999999988899999999999875              22222222111                2233334


Q ss_pred             HHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHH
Q 026767           57 RALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAI  135 (233)
Q Consensus        57 ~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg  135 (233)
                      ..|- .+++.+|+.+++.|+...+..      ..+...+|..|.+.|+|..|+..|.++..+      ++..-...+..+
T Consensus       570 ~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y~~fk~A  637 (1238)
T KOG1127|consen  570 PYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKYGRFKEA  637 (1238)
T ss_pred             ccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHHHHHHHH
Confidence            4555 588999999999998776642      357889999999999999999999999865      233334457788


Q ss_pred             HHHHhhCCHHHHHHHHHHhh
Q 026767          136 IVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       136 ~~~~~~gd~~~A~~~~~~al  155 (233)
                      .+....|+|.+|+..+++.+
T Consensus       638 ~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  638 VMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHhhhHHHHHHHHHHHH
Confidence            88889999999999999876

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.72  E-value=0.0011  Score=61.11  Aligned_cols=162  Identities=15%  Similarity=0.094  Sum_probs=113.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHH------HHHHHHHcCCchHHHHHHHHH------HHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767           15 AAALAKELHNWREVADFYRK------ASELYNECGRSQPASDALAKA------ARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus        15 ~g~~~~~~g~~~eA~~~~~~------A~~l~~~~g~~~~~a~~l~~l------g~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      ++.++...|=..+|+.-|++      -+..|...|+...+.......      ...|. .||.-.=-.+|++|.+++...
T Consensus       404 laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~  483 (777)
T KOG1128|consen  404 LAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYI  483 (777)
T ss_pred             HHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhh
Confidence            44455555555555544433      334455566444443333222      33455 577666668899999998865


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL  161 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~  161 (233)
                      .     +.+...+|......++|.++.+++++++++      .+..-.+++++|.|.++.+++..|.++|..++...   
T Consensus       484 s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~---  549 (777)
T KOG1128|consen  484 S-----ARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE---  549 (777)
T ss_pred             h-----HHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC---
Confidence            4     235566777788899999999999999986      34455689999999999999999999999998543   


Q ss_pred             CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          162 RSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       162 ~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                       ...+...++|..+| ..++-.++...++++
T Consensus       550 -Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA  579 (777)
T KOG1128|consen  550 -PDNAEAWNNLSTAYIRLKKKKRAFRKLKEA  579 (777)
T ss_pred             -CCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence             22356777888888 778888888777777

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.71  E-value=0.0028  Score=56.00  Aligned_cols=123  Identities=14%  Similarity=0.033  Sum_probs=92.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026767           15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRA   93 (233)
Q Consensus        15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~   93 (233)
                      .+..+...|.+++|...++.   ++.   +..+-...+.-.+.++. .++.++|++.+++++.+.+...      ....+
T Consensus       312 ~A~~~~~~~~~d~A~~~l~~---L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~------~l~~~  379 (484)
T COG4783         312 RALQTYLAGQYDEALKLLQP---LIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP------LLQLN  379 (484)
T ss_pred             HHHHHHHhcccchHHHHHHH---HHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc------HHHHH
Confidence            34445556777777777766   222   22244556667788888 7999999999999999988652      35678


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           94 ATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      +|.++.+.|++.+|+..+.+.+.      ..+.....|..++.+|-.+|+-.+|...+-+.+
T Consensus       380 ~a~all~~g~~~eai~~L~~~~~------~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         380 LAQALLKGGKPQEAIRILNRYLF------NDPEDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             HHHHHHhcCChHHHHHHHHHHhh------cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            99999999999999999988763      233444567888899999998888888777664

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.68  E-value=0.00015  Score=46.85  Aligned_cols=53  Identities=19%  Similarity=0.194  Sum_probs=43.5

Q ss_pred             HHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           98 YIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        98 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      ++..|+|++|+.+|++++...      +....++..++.|+...|++++|...+++++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ChhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            357899999999999998752      33455778999999999999999999999873

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.68  E-value=0.00016  Score=47.43  Aligned_cols=57  Identities=14%  Similarity=0.195  Sum_probs=48.7

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           95 TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        95 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ..+|.+.++|++|++++++++.+.      +.....+...|.++..+|++.+|.+.|++++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELD------PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            567889999999999999999762      334567889999999999999999999999844

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=97.67  E-value=0.023  Score=47.16  Aligned_cols=192  Identities=10%  Similarity=0.036  Sum_probs=127.6

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHHh
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~   80 (233)
                      +.+..+...+.+.+.++.+.+++.-|.++..--++.|.+.+....... ..++..++. . ..-++-..+..+|+.+.+.
T Consensus         4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~-~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~   82 (260)
T PF04190_consen    4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEES-IARLIELISLFPPEEPERKKFIKAAIKWSKF   82 (260)
T ss_dssp             T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHH-HHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence            345677777888888888888888888888888888888777765543 467777766 3 3333466788889999855


Q ss_pred             cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-----------HHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHH
Q 026767           81 DDKEQMAFDLYRAATNVYIKLEKYADAATFLLRW-----------GLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEK  149 (233)
Q Consensus        81 ~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~  149 (233)
                      .+.+.+-...+..+|..+.+.|+|.+|..+|-.+           +......+.+.....-.....+-|+..++...|..
T Consensus        83 ~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~  162 (260)
T PF04190_consen   83 GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANE  162 (260)
T ss_dssp             SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence            5566777789999999999999999999998442           11111223333333333677778899999999999


Q ss_pred             HHHHhhcC-----CC--------CCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc--cccc
Q 026767          150 CYNDCSQV-----DA--------FLRSDQNRCATKLISAYTEGDVEEIKRVAQSS--AISN  195 (233)
Q Consensus       150 ~~~~al~~-----~~--------~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~--~~~~  195 (233)
                      .+......     +.        +....--.++.-|..+++.++.+.+...++.|  .+++
T Consensus       163 ~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~r  223 (260)
T PF04190_consen  163 LFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKR  223 (260)
T ss_dssp             HHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---H
T ss_pred             HHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccc
Confidence            88777622     21        22345567888888899889999999999999  5544

; PDB: 3LKU_E 2WPV_G.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.67  E-value=0.0017  Score=52.37  Aligned_cols=99  Identities=12%  Similarity=0.075  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc----c---CcchHHHhHHH
Q 026767           62 AVPEDAIQLYTDACIMLEEDD-KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC----N---ATNSQCKAYLS  133 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~---~~~~~a~~~~~  133 (233)
                      ..+++|++.|.-|+-.+.-.+ +....+.+..+++++|..+|+.+.-..++++|++.+.+.    .   ..-.....++-
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            478999999999999988666 566677899999999999999888888888888777643    1   22345677899


Q ss_pred             HHHHHHhhCCHHHHHHHHHHhhcCCCC
Q 026767          134 AIIVYLYANDFKQAEKCYNDCSQVDAF  160 (233)
Q Consensus       134 lg~~~~~~gd~~~A~~~~~~al~~~~~  160 (233)
                      +|.++.+.|++++|.+.|.+.+.....
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999866544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.66  E-value=0.0032  Score=49.24  Aligned_cols=111  Identities=13%  Similarity=0.038  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ..+...++..+|..|.+.|+.++|+.+|.++.+.   .-.+......+.++-.+.. .+++.....+..+|-.+....|+
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d  108 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD  108 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence            3456788999999999999999999999997664   4445556666666666666 89999999999999999999887


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      +......-.--|..++..++|.+|...|-.+..-+
T Consensus       109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            66666556666777888999999999998887554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PLN02789 farnesyltranstransferase

Probab=97.64  E-value=0.0058  Score=52.33  Aligned_cols=96  Identities=9%  Similarity=0.026  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCH--HHHHHHHHHHHHHHHhcCCh
Q 026767            9 AKHMESAAALAKELH-NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVP--EDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         9 a~~~~~~g~~~~~~g-~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~--~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ..++..-+.++..++ ++++++.++++++....      .-..+++..+.++. .|+.  ++++.++.+++++....   
T Consensus        71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np------knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN---  141 (320)
T PLN02789         71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNP------KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN---  141 (320)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC------cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc---
Confidence            356777777777777 57888888888886521      11223444444444 3331  34455555554433321   


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                         ..++...+.++..+|+|++|++++.++++
T Consensus       142 ---y~AW~~R~w~l~~l~~~~eeL~~~~~~I~  170 (320)
T PLN02789        142 ---YHAWSHRQWVLRTLGGWEDELEYCHQLLE  170 (320)
T ss_pred             ---HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence               12444444555555555555555555444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.0046  Score=55.84  Aligned_cols=87  Identities=15%  Similarity=0.133  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc---cCcc------hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKC---NATN------SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~------~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      ...++|.+.+++..|+|++|++.++.|+.++++.   ++..      ....+..-++.|+..+|+..+|...|...+...
T Consensus       175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence            3578899999999999999999999999888753   2221      234556788899999999999999999887332


Q ss_pred             CCCCchHHHHHHHHHH
Q 026767          159 AFLRSDQNRCATKLIS  174 (233)
Q Consensus       159 ~~~~~~e~~~l~~L~~  174 (233)
                      --+.+-.+.+.++|..
T Consensus       255 ~~D~~~~Av~~NNLva  270 (652)
T KOG2376|consen  255 PADEPSLAVAVNNLVA  270 (652)
T ss_pred             CCCchHHHHHhcchhh
Confidence            2222333444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.00077  Score=55.43  Aligned_cols=98  Identities=15%  Similarity=0.014  Sum_probs=73.4

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKA  130 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~  130 (233)
                      +.+.|.-+. .|+|..|..-|..=+.-|+..-.   ...++..||.++..+|+|++|...|..+..   ..+..+....+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda  217 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA  217 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence            455555555 68888888888888777776543   345788888888888888888888887765   44445555567


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          131 YLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       131 ~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ++.+|.+...+|+.++|...|++.+
T Consensus       218 llKlg~~~~~l~~~d~A~atl~qv~  242 (262)
T COG1729         218 LLKLGVSLGRLGNTDEACATLQQVI  242 (262)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            8888888888888888888888876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.61  E-value=0.0066  Score=59.74  Aligned_cols=192  Identities=16%  Similarity=0.131  Sum_probs=135.8

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHh
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELY--NECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~--~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~   80 (233)
                      ++|.++.....-++... +.++.++|....++|+...  ++-........+|.|+=..|  |.-+.-.+.|+||+.+...
T Consensus      1453 ssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y--G~eesl~kVFeRAcqycd~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY--GTEESLKKVFERACQYCDA 1529 (1710)
T ss_pred             cCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh--CcHHHHHHHHHHHHHhcch
Confidence            34444444444454444 4889999999999998764  22222223333344433332  5556667889999888763


Q ss_pred             cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCC
Q 026767           81 DDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDA  159 (233)
Q Consensus        81 ~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~  159 (233)
                             ..++..|..+|...+++++|.++|++.++-++      ..-.+|...+...+.+.+-..|...+.+|+ .++.
T Consensus      1530 -------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1530 -------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             -------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence                   46889999999999999999999999887654      223567888889999999999999999998 4453


Q ss_pred             CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc---ccccchHHHHHHhccCCCCchh
Q 026767          160 FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS---AISNLDHVIIKLARKLPTGDVS  213 (233)
Q Consensus       160 ~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~---~~~~ld~~~~~l~~~l~~~~~~  213 (233)
                         .+.-.++...+..- ..||.++.+..|+.-   .=.+.|-|-+=|-.-++.|++.
T Consensus      1597 ---~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1597 ---QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred             ---hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH
Confidence               23345667777654 889999999999988   3447888966666666666554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.61  E-value=0.0031  Score=47.30  Aligned_cols=113  Identities=17%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRA   93 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~   93 (233)
                      ..|......++...+++.+++++.+|+  |++......         ..=.......+++.            -..++..
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~--G~~l~~~~~---------~~W~~~~r~~l~~~------------~~~~~~~   67 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYR--GDFLPDLDD---------EEWVEPERERLREL------------YLDALER   67 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT----SSTTGGGTT---------STTHHHHHHHHHHH------------HHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhC--CCCCCCCCc---------cHHHHHHHHHHHHH------------HHHHHHH
Confidence            335555567888889999999998886  444211000         00001111111111            1235556


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           94 ATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ++..+...|++++|+..+++++.+     ++..+. .+..+..+|..+|++..|.+.|+++.
T Consensus        68 l~~~~~~~~~~~~a~~~~~~~l~~-----dP~~E~-~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   68 LAEALLEAGDYEEALRLLQRALAL-----DPYDEE-AYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHH-----STT-HH-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhc-----CCCCHH-HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            666666666666666666666654     333332 45566666666666666666666664

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.59  E-value=0.0027  Score=55.77  Aligned_cols=124  Identities=14%  Similarity=0.091  Sum_probs=94.9

Q ss_pred             Hhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHH
Q 026767           58 ALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAII  136 (233)
Q Consensus        58 ~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~  136 (233)
                      ++. .++++.|++.+++-.+-.+         .+..-++.++...++..+|+..+.+++...      +..+..+...+.
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~p---------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------p~d~~LL~~Qa~  242 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDP---------EVAVLLARVYLLMNEEVEAIRLLNEALKEN------PQDSELLNLQAE  242 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCC---------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Confidence            344 4888888888887554432         234458999999999999999999999431      222566788889


Q ss_pred             HHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHH
Q 026767          137 VYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVI  200 (233)
Q Consensus       137 ~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~  200 (233)
                      .++..++++.|++..++++.+.    +.+......|+.+| ..||++.|..+++.. .+..-+...
T Consensus       243 fLl~k~~~~lAL~iAk~av~ls----P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~  304 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELS----PSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK  304 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence            9999999999999999998554    34567778899999 899999999999987 654444333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=97.58  E-value=0.0018  Score=49.53  Aligned_cols=97  Identities=15%  Similarity=0.040  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .-+.....|.-+.+.|++++|...|+-...+     |+. ..+-+..+|.++. .++|++|+..|..|..+-.....   
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~---  106 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR---  106 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---
Confidence            3344555555566799999999988765542     121 2456889999999 89999999999999998765443   


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                         .....|.+++.+|+...|..+|+.+++
T Consensus       107 ---p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        107 ---PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence               366899999999999999999999987

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=97.57  E-value=0.0018  Score=53.35  Aligned_cols=91  Identities=13%  Similarity=0.040  Sum_probs=82.2

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC
Q 026767           63 VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN  142 (233)
Q Consensus        63 ~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g  142 (233)
                      .....|+.+.+|++.|...+..+....+...+|..|...|+|++|+.+|+.+...+++.|.......++..+..|+...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            34567999999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             CHHHHHHHHHH
Q 026767          143 DFKQAEKCYND  153 (233)
Q Consensus       143 d~~~A~~~~~~  153 (233)
                      |.+......-+
T Consensus       233 ~~~~~l~~~le  243 (247)
T PF11817_consen  233 DVEDYLTTSLE  243 (247)
T ss_pred             CHHHHHHHHHH
Confidence            99887765543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0014  Score=56.95  Aligned_cols=134  Identities=12%  Similarity=-0.008  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------HHcCCch--------------HHHHHHHHHH-HHhh-
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELY--------------NECGRSQ--------------PASDALAKAA-RALE-   60 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~--------------~~~g~~~--------------~~a~~l~~lg-~~~~-   60 (233)
                      +|.-=|+++.+.+++++|+-.|+.|..+.              ...|+..              ..|+++.-+| .++. 
T Consensus       336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~  415 (564)
T KOG1174|consen  336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP  415 (564)
T ss_pred             HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeecc
Confidence            44444566666667776666666665542              1222221              1233333343 2333 


Q ss_pred             h-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           61 D-AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        61 ~-g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                      . .--++|-.+|++++.+-+.     . ..+...+++++..-|++..++.++++.+..+-+       ...+..+|.+..
T Consensus       416 dp~~rEKAKkf~ek~L~~~P~-----Y-~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~  482 (564)
T KOG1174|consen  416 DPRMREKAKKFAEKSLKINPI-----Y-TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-------VNLHNHLGDIMR  482 (564)
T ss_pred             CchhHHHHHHHHHhhhccCCc-----c-HHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-------cHHHHHHHHHHH
Confidence            2 3346778888888766542     1 236678999999999999999999999976533       235688999999


Q ss_pred             hhCCHHHHHHHHHHhhcC
Q 026767          140 YANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       140 ~~gd~~~A~~~~~~al~~  157 (233)
                      +...+.+|..+|..++.+
T Consensus       483 A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  483 AQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HhhhHHHHHHHHHHHHhc
Confidence            999999999999999944

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.56  E-value=0.00033  Score=45.96  Aligned_cols=57  Identities=18%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      ..+|. .+++++|++++++++.+.+..      ...+...|.++..+|++.+|+..|+++++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            34566 688999999999999887762      2467788999999999999999999988653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.55  E-value=0.024  Score=44.61  Aligned_cols=101  Identities=14%  Similarity=-0.026  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      -+......++..+. .+++++|+..++.++..-.+.   ..-..+-.+++.+.+.+|.+++|+..+....       ...
T Consensus        87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~  156 (207)
T COG2976          87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE---NLKALAALRLARVQLQQKKADAALKTLDTIK-------EES  156 (207)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------ccc
Confidence            33334444455555 466777766666666433322   2223344566677777777777666554322       222


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ..+......|.+++..||-++|+..|++++..
T Consensus       157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         157 WAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            23333455666777777777777777776633

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.54  E-value=0.013  Score=49.93  Aligned_cols=145  Identities=17%  Similarity=0.078  Sum_probs=104.9

Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 026767           34 KASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLL  112 (233)
Q Consensus        34 ~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~  112 (233)
                      -.++.....+++. .+.-...+|.-+. .|++..|+.+|..|++.-+.      -..++.+-|.+|+.+|+-.-|+.-+.
T Consensus        24 ~~~e~a~~~~~~a-dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~   96 (504)
T KOG0624|consen   24 LFLEGAESTASPA-DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN------NYQAIFRRATVYLAMGKSKAALQDLS   96 (504)
T ss_pred             HHHHHHHhcCCHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------hHHHHHHHHHHHhhhcCCccchhhHH
Confidence            3333344445543 4444667788777 89999999999999976553      23578888999999999999999999


Q ss_pred             HHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCC----------CchHHHHHH-HHHHHHhcCC
Q 026767          113 RWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFL----------RSDQNRCAT-KLISAYTEGD  180 (233)
Q Consensus       113 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~----------~~~e~~~l~-~L~~a~~~gd  180 (233)
                      +.+++      .+.-..+...-|.+++++|++++|..-|...+.. +.-.          ...|...+. .+..++..||
T Consensus        97 rVlel------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD  170 (504)
T KOG0624|consen   97 RVLEL------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD  170 (504)
T ss_pred             HHHhc------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence            99875      3333445678899999999999999999999843 3221          234444444 4445668899


Q ss_pred             HHHHHHHHhhc
Q 026767          181 VEEIKRVAQSS  191 (233)
Q Consensus       181 ~~~a~~~~~~~  191 (233)
                      ...+.+++..-
T Consensus       171 ~~~ai~~i~~l  181 (504)
T KOG0624|consen  171 CQNAIEMITHL  181 (504)
T ss_pred             hhhHHHHHHHH
Confidence            99888887766

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.53  E-value=0.003  Score=57.41  Aligned_cols=134  Identities=15%  Similarity=0.046  Sum_probs=102.0

Q ss_pred             chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767           45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      +....+++.-++..|. .|++++|+++..+|++.-+.      ..+.+..-|.++-..|++.+|.+.++.|..+  +..+
T Consensus       190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~D  261 (517)
T PF12569_consen  190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEAREL--DLAD  261 (517)
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--Chhh
Confidence            4445688899999998 89999999999999988653      3578899999999999999999999999876  3334


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC-C-CC---CchHHHHHHHHHHHH-hcCCHHHHHHHHhh
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD-A-FL---RSDQNRCATKLISAY-TEGDVEEIKRVAQS  190 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-~-~~---~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~  190 (233)
                      +...    ...+..+++.|+.++|.+.+...-... . ..   ..+=..++...|++| +.|+...|...+..
T Consensus       262 RyiN----sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~  330 (517)
T PF12569_consen  262 RYIN----SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA  330 (517)
T ss_pred             HHHH----HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4322    456777889999999999988875222 1 11   123344778889999 78998887755443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.50  E-value=0.0022  Score=54.11  Aligned_cols=151  Identities=18%  Similarity=0.176  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL   90 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~   90 (233)
                      ..-.|.++...|++++|+..+.+.       ++..    +..-.-.++. .++++.|.+.++..-+    .++.    .+
T Consensus       105 ~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE----~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD----~~  165 (290)
T PF04733_consen  105 QLLAATILFHEGDYEEALKLLHKG-------GSLE----LLALAVQILLKMNRPDLAEKELKNMQQ----IDED----SI  165 (290)
T ss_dssp             HHHHHHHHCCCCHHHHHHCCCTTT-------TCHH----HHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCC----HH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcc-------Cccc----HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc----HH
Confidence            344556666678888777766542       2222    1112333455 6999999877766443    3332    24


Q ss_pred             HHHHHHHHH--Hhc--cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           91 YRAATNVYI--KLE--KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        91 l~~lg~~~~--~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                      +.+++..++  ..|  ++.+|...|++...   +.+.   ....++.++.|++.+|+|++|.+.+++++...    +...
T Consensus       166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~---t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~----~~~~  235 (290)
T PF04733_consen  166 LTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGS---TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD----PNDP  235 (290)
T ss_dssp             HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----CCHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----cCCH
Confidence            445555443  344  69999999997432   2222   24567899999999999999999999987432    3356


Q ss_pred             HHHHHHHHHH-hcCCH-HHHHHHHhhc
Q 026767          167 RCATKLISAY-TEGDV-EEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~-~~a~~~~~~~  191 (233)
                      .++.+++-+. ..|+. +.+.+.+.+-
T Consensus       236 d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  236 DTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            6777887755 55665 6677777665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.49  E-value=0.0031  Score=47.28  Aligned_cols=107  Identities=22%  Similarity=0.248  Sum_probs=66.8

Q ss_pred             HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHhHccCcchHHHhHHH
Q 026767           56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYA-DAATFLLRWGLAADKCNATNSQCKAYLS  133 (233)
Q Consensus        56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~a~~~~~  133 (233)
                      |.... .++++.++..+++++.+++..--.....             ..+- .....+++.            ...++..
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------------~~W~~~~r~~l~~~------------~~~~~~~   67 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------------EEWVEPERERLREL------------YLDALER   67 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------------STTHHHHHHHHHHH------------HHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------------cHHHHHHHHHHHHH------------HHHHHHH
Confidence            44444 5889999999999999998432110000             0111 111222211            1235567


Q ss_pred             HHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          134 AIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       134 lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++..+...|++.+|...+++++....+    .-.+...|+.++ ..|+...|....++.
T Consensus        68 l~~~~~~~~~~~~a~~~~~~~l~~dP~----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   68 LAEALLEAGDYEEALRLLQRALALDPY----DEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            888899999999999999999955433    235666778888 899999999999988

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.49  E-value=0.025  Score=53.54  Aligned_cols=183  Identities=14%  Similarity=0.022  Sum_probs=119.7

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      ++......++.....++  .|++++|.++.+.++...-..-.. ..+.++..+|.+.. .|++++|+.+..++.++.+..
T Consensus       454 ~~l~ae~~aL~a~val~--~~~~e~a~~lar~al~~L~~~~~~-~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~  530 (894)
T COG2909         454 GDLLAEFQALRAQVALN--RGDPEEAEDLARLALVQLPEAAYR-SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH  530 (894)
T ss_pred             hhHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhcccccch-hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence            34444555665555555  699999999999999877554444 56788999999999 899999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH---HhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC---KAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a---~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      +.......+....+.++..+|+...|...-.....-.+.....+...   ..+..+..++.   +++.+.......+.+.
T Consensus       531 ~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~  607 (894)
T COG2909         531 DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVG  607 (894)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhh
Confidence            99999888999999999999943333332222221111112222211   22223333333   3556655555554332


Q ss_pred             CC---CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          159 AF---LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       159 ~~---~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..   .....+-.+..|++.. ..||.++|-..+.+-
T Consensus       608 ~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~  644 (894)
T COG2909         608 SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL  644 (894)
T ss_pred             hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            21   1222333445777766 799999998887766

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.48  E-value=0.015  Score=44.42  Aligned_cols=87  Identities=20%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~  140 (233)
                      .|+++.|+..|.+++.+...   .......+...+..+...+++..|+..+.+++......     ....+..++.++..
T Consensus       143 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  214 (291)
T COG0457         143 LGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLK  214 (291)
T ss_pred             cCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHH
Confidence            56666666666666331110   01112234444444556666666666666666543221     23445666666666


Q ss_pred             hCCHHHHHHHHHHhh
Q 026767          141 ANDFKQAEKCYNDCS  155 (233)
Q Consensus       141 ~gd~~~A~~~~~~al  155 (233)
                      .+++..|...+..++
T Consensus       215 ~~~~~~a~~~~~~~~  229 (291)
T COG0457         215 LGKYEEALEYYEKAL  229 (291)
T ss_pred             cccHHHHHHHHHHHH
Confidence            666666666666665

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=97.45  E-value=0.0045  Score=51.02  Aligned_cols=93  Identities=15%  Similarity=0.081  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767           23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL  101 (233)
Q Consensus        23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~  101 (233)
                      ......++++.+|...|...|.......+...+|.-|. .|++++|+++|+.+...|+..|.......++..+-.++..+
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            34567899999999999999999999999999999999 79999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHH
Q 026767          102 EKYADAATFLLRWG  115 (233)
Q Consensus       102 g~~~~A~~~~~~al  115 (233)
                      |+.+..+.+.-+.+
T Consensus       232 ~~~~~~l~~~leLl  245 (247)
T PF11817_consen  232 GDVEDYLTTSLELL  245 (247)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999888765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.0048  Score=51.65  Aligned_cols=181  Identities=14%  Similarity=0.027  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHH-------HhhhCCHHH---HHHHHHHHHHHH-
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGR-SQPASDALAKAAR-------ALEDAVPED---AIQLYTDACIML-   78 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~-~~~~a~~l~~lg~-------~~~~g~~~~---A~~~~~~Al~~~-   78 (233)
                      .+..+|-+|....+|.+|.+||++-..++-+... ..-.|.++.+.+.       +...+|.+.   -.--++.|+.+- 
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse  125 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE  125 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence            3556777888888899999999888877644322 2233444444321       111233111   001112222221 


Q ss_pred             ----------HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH
Q 026767           79 ----------EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE  148 (233)
Q Consensus        79 ----------~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~  148 (233)
                                ++.... ..+.++++.|.+..+.|+|+.|++-|+.++..   .|-.+..   -.+++++|...|++..|+
T Consensus       126 ~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvqkFqaAlqv---sGyqpll---AYniALaHy~~~qyasAL  198 (459)
T KOG4340|consen  126 GDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQKFQAALQV---SGYQPLL---AYNLALAHYSSRQYASAL  198 (459)
T ss_pred             ccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHHHHHHHHhh---cCCCchh---HHHHHHHHHhhhhHHHHH
Confidence                      111111 23468899999999999999999999999865   2444433   378999999999999999


Q ss_pred             HHHHHhh-----cCCCCC-------------CchHHHHHHHHHHH--------HhcCCHHHHHHHHhhc---ccccchH
Q 026767          149 KCYNDCS-----QVDAFL-------------RSDQNRCATKLISA--------YTEGDVEEIKRVAQSS---AISNLDH  198 (233)
Q Consensus       149 ~~~~~al-----~~~~~~-------------~~~e~~~l~~L~~a--------~~~gd~~~a~~~~~~~---~~~~ld~  198 (233)
                      ++..+.+     ..|.++             +...-.....|.++        |+.+|.+.|++++..-   .=..+|+
T Consensus       199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP  277 (459)
T KOG4340|consen  199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP  277 (459)
T ss_pred             HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence            9988765     334332             11111122233332        2569999999988765   4445555

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.007  Score=56.84  Aligned_cols=143  Identities=17%  Similarity=0.177  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHcCCchHHHHH--------HHHHHHHhh-h-CCHHHHHHHHHHH-
Q 026767           12 MESAAALAKELHNWREVADFYRKASE------LYNECGRSQPASDA--------LAKAARALE-D-AVPEDAIQLYTDA-   74 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~------l~~~~g~~~~~a~~--------l~~lg~~~~-~-g~~~~A~~~~~~A-   74 (233)
                      -..+|..|-+.|++.+|+.+|.+|-.      +.++++-....++.        +...+..|+ . |..+.|...|.+| 
T Consensus       970 cYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen  970 CYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG 1049 (1416)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc
Confidence            44677888899999999999888654      44455444433332        233355566 4 4777787777654 


Q ss_pred             -----HHHHHhcC------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHH------HHHHHHhHcc---------
Q 026767           75 -----CIMLEEDD------------KEQMAFDLYRAATNVYIKLEKYADAATFLL------RWGLAADKCN---------  122 (233)
Q Consensus        75 -----l~~~~~~g------------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~------~al~~~~~~~---------  122 (233)
                           +++.-...            +...-...+++.++++....+|++|..++-      +|+.+|...+         
T Consensus      1050 m~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE 1129 (1416)
T KOG3617|consen 1050 MIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAE 1129 (1416)
T ss_pred             chHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence                 33322111            222223578889999999999999987654      4444443221         


Q ss_pred             --------Ccc--hHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767          123 --------ATN--SQCKAYLSAIIVYLYANDFKQAEKCYNDC  154 (233)
Q Consensus       123 --------~~~--~~a~~~~~lg~~~~~~gd~~~A~~~~~~a  154 (233)
                              ...  ..-..+-.++.+++++|+|..|-+-|.++
T Consensus      1130 ~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1130 LMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             hcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence                    111  23345677788888888887777777665

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.45  E-value=0.00019  Score=46.43  Aligned_cols=51  Identities=20%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      .|++++|++.|++++...+..      ..+...++.++.+.|++++|...+++++..
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             ccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            689999999999999888763      257778999999999999999999988853

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.45  E-value=0.0042  Score=48.60  Aligned_cols=132  Identities=9%  Similarity=-0.030  Sum_probs=91.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY   91 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l   91 (233)
                      ..++...++.=|++..+.-..+.++...-.       .....+|..+. .|++.+|..+|++|+.-.-.     .....+
T Consensus        60 ~~~~~a~~q~ldP~R~~Rea~~~~~~ApTv-------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA-----~d~a~l  127 (251)
T COG4700          60 HTLLMALQQKLDPERHLREATEELAIAPTV-------QNRYRLANALAELGRYHEAVPHYQQALSGIFA-----HDAAML  127 (251)
T ss_pred             HHHHHHHHHhcChhHHHHHHHHHHhhchhH-------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-----CCHHHH
Confidence            445566666667776666555555543222       22345666666 68999999999999854332     223577


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCC
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAF  160 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~  160 (233)
                      ..++......+++..|...++...+..    .........+.++.++..+|.+.+|+..|+.++.. +++
T Consensus       128 LglA~Aqfa~~~~A~a~~tLe~l~e~~----pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         128 LGLAQAQFAIQEFAAAQQTLEDLMEYN----PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhhcC----CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            788889999999999999999887653    22223345677889999999999999999999855 444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.43  E-value=0.025  Score=44.37  Aligned_cols=116  Identities=12%  Similarity=0.128  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA  141 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~  141 (233)
                      =|++.++.-..+.+++.+..       .-...+|..+.++|+|.+|..+|++++.     |.--.....++.++...+..
T Consensus        70 ldP~R~~Rea~~~~~~ApTv-------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~  137 (251)
T COG4700          70 LDPERHLREATEELAIAPTV-------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAI  137 (251)
T ss_pred             cChhHHHHHHHHHHhhchhH-------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhh
Confidence            44554444444444444432       2334566666777777777777777763     33334445566777777777


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          142 NDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       142 gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +++..|...+++....+.-.++....  ..+++++ ..|.++.|+..++.+
T Consensus       138 ~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa~g~~a~Aesafe~a  186 (251)
T COG4700         138 QEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTLAAQGKYADAESAFEVA  186 (251)
T ss_pred             ccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHHHhcCCchhHHHHHHHH
Confidence            77777777777665433211222222  2345555 456666666666655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.41  E-value=0.034  Score=42.47  Aligned_cols=167  Identities=17%  Similarity=0.091  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ...+...+..+...+++..+...+..+...    .........+...+..+. .+.+..++..+.+++........    
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  130 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL----  130 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch----
Confidence            355666777777888888888888888776    234456677778888888 68888888888888876665421    


Q ss_pred             HHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           88 FDLYRAATN-VYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        88 ~~~l~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                        .....+. ++...|++++|...|++++... .  ........+...+..+...+++..|...+.+++......   ..
T Consensus       131 --~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~  202 (291)
T COG0457         131 --AEALLALGALYELGDYEEALELYEKALELD-P--ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD---DA  202 (291)
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc---ch
Confidence              1222333 8889999999999999995421 1  013444556677777888899999999999988443221   34


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          167 RCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .....++..+ ..++.+.+...+...
T Consensus       203 ~~~~~~~~~~~~~~~~~~a~~~~~~~  228 (291)
T COG0457         203 EALLNLGLLYLKLGKYEEALEYYEKA  228 (291)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            4566666666 567777777777776

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.41  E-value=0.014  Score=53.30  Aligned_cols=123  Identities=13%  Similarity=-0.013  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHhHccCcchHHHhHHH
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL--------EKYADAATFLLRWGLAADKCNATNSQCKAYLS  133 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~  133 (233)
                      +++.+|+.+|++|+++-+...      .++-.++.++...        .+..++.+..++++.+    ........++..
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al----~~~~~~~~~~~a  425 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL----PELNVLPRIYEI  425 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc----ccCcCChHHHHH
Confidence            558899999999999888653      2333334443322        2234444444444332    222333567888


Q ss_pred             HHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHH
Q 026767          134 AIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHV  199 (233)
Q Consensus       134 lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~  199 (233)
                      +|.++...|++++|..++++++.+..   +  ......+|.++ ..|+.++|.+.++++ -++..++.
T Consensus       426 la~~~~~~g~~~~A~~~l~rAl~L~p---s--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        426 LAVQALVKGKTDEAYQAINKAIDLEM---S--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC---C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999999999999999996652   2  45677788888 699999999999999 56665554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.40  E-value=0.0061  Score=56.65  Aligned_cols=131  Identities=18%  Similarity=0.270  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHH----
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKA------SELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIM----   77 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A------~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~----   77 (233)
                      .+.|..+|.+|-...++++|++||.+.      +++. +..-|......-...|.-+. .|+++.|+.+|-+|-.+    
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaiela-rfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai  739 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELA-RFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI  739 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHH-HhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence            355777888888888888888887543      3322 12223333333334455666 58888888877544322    


Q ss_pred             ---------------HHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC
Q 026767           78 ---------------LEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN  142 (233)
Q Consensus        78 ---------------~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g  142 (233)
                                     .....++..+...+-.++.-|...|+|+.|.++|.++-.              .......|-+.|
T Consensus       740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------------~~dai~my~k~~  805 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------------FKDAIDMYGKAG  805 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------------hHHHHHHHhccc
Confidence                           222233333333344455556666666666665554321              122334455556


Q ss_pred             CHHHHHHHHHHh
Q 026767          143 DFKQAEKCYNDC  154 (233)
Q Consensus       143 d~~~A~~~~~~a  154 (233)
                      ++..|.+.-+++
T Consensus       806 kw~da~kla~e~  817 (1636)
T KOG3616|consen  806 KWEDAFKLAEEC  817 (1636)
T ss_pred             cHHHHHHHHHHh
Confidence            665555555554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.40  E-value=0.00051  Score=38.00  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASEL   38 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l   38 (233)
                      |++|.++|.+|..+|++++|+.+|++|+++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            345556666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.39  E-value=0.025  Score=44.50  Aligned_cols=104  Identities=16%  Similarity=0.008  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR  162 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~  162 (233)
                      ....+......++..++..+++++|...++.++...   .+....+-+-.+|+.+.+.+|.+++|+..+....     ..
T Consensus        84 ~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-----~~  155 (207)
T COG2976          84 KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTIK-----EE  155 (207)
T ss_pred             ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-----cc
Confidence            444444566677888999999999999999998542   2333344455899999999999999999887643     12


Q ss_pred             chHHHHHHHHHHHH-hcCCHHHHHHHHhhcccc
Q 026767          163 SDQNRCATKLISAY-TEGDVEEIKRVAQSSAIS  194 (233)
Q Consensus       163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~~~  194 (233)
                      +.......--|+++ ..||..+|+..++.++..
T Consensus       156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         156 SWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            34566677788988 899999999999999444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.37  E-value=0.014  Score=54.29  Aligned_cols=173  Identities=12%  Similarity=0.067  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ....+..|..+.......|++..+.++|++++-..-      +.-..|+..+..|. -|....|+...++.+...++..+
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~------~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~  392 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF------GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD  392 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence            345677888888888899999999999999987642      44555666677766 56666777777776666654433


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh-----------CCHHHHHHHHH
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA-----------NDFKQAEKCYN  152 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-----------gd~~~A~~~~~  152 (233)
                      ..   .++.-.-.+.-+.+.+.++++|.++++..+.. ......++++..+|++|-.+           --..+++..++
T Consensus       393 ~s---~~Lmasklc~e~l~~~eegldYA~kai~~~~~-~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale  468 (799)
T KOG4162|consen  393 IS---VLLMASKLCIERLKLVEEGLDYAQKAISLLGG-QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE  468 (799)
T ss_pred             ch---HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh-hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence            32   13333334444567777777777777775522 22233445566666666443           12344555555


Q ss_pred             HhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          153 DCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       153 ~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +|++...-+.    .++-.|+--| ..++...|...++++
T Consensus       469 ~av~~d~~dp----~~if~lalq~A~~R~l~sAl~~~~ea  504 (799)
T KOG4162|consen  469 EAVQFDPTDP----LVIFYLALQYAEQRQLTSALDYAREA  504 (799)
T ss_pred             HHHhcCCCCc----hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5553321111    3333344334 456666666666666

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.37  E-value=0.0025  Score=50.36  Aligned_cols=102  Identities=19%  Similarity=0.110  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..+..=|+-+...|+|.+|..-|.+|+++....-. ...+.+|.|-|.++. .+..+.||.-..+|+++.+.-.     
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~-----  168 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE-----  168 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH-----
Confidence            445556677777799999999999999999866554 456778888888888 8999999999999999977432     


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                       .++.+-+.+|-++..|++|++-|.+.+++
T Consensus       169 -kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  169 -KALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             -HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence             46778899999999999999999998875

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.36  E-value=0.0066  Score=54.73  Aligned_cols=119  Identities=18%  Similarity=0.123  Sum_probs=92.1

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 026767           24 NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE  102 (233)
Q Consensus        24 ~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g  102 (233)
                      +.++|.+..++....|     | ..+..+...|.++. .|+.++|++.|++|+..-.+  .+.....|+..++.++.-+.
T Consensus       248 ~~~~a~~lL~~~~~~y-----P-~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~  319 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRY-----P-NSALFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQH  319 (468)
T ss_pred             CHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHc
Confidence            3455666666655554     3 45566777889988 89999999999999843322  22234468999999999999


Q ss_pred             cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH-------HHHHHHHHHhh
Q 026767          103 KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF-------KQAEKCYNDCS  155 (233)
Q Consensus       103 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~-------~~A~~~~~~al  155 (233)
                      +|.+|..++.+..+.     ..++.+...+-.|.|+...|+.       ++|.+.|.++-
T Consensus       320 ~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  320 DWEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             hHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            999999999988753     4677777779999999999999       88888888775

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.36  E-value=0.0039  Score=46.63  Aligned_cols=89  Identities=15%  Similarity=0.054  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      +..+.+-|.-.. .|+|.+|++.++.-..-|+-..-.   -.+...++.+|.+.++|++|+..+++-+.+.-.   ....
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya---~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~v   83 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA---EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPNV   83 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCCc
Confidence            444555555555 799999998888877777655432   356788999999999999999999998877532   3445


Q ss_pred             HHhHHHHHHHHHhhCC
Q 026767          128 CKAYLSAIIVYLYAND  143 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd  143 (233)
                      ..++...|+++..+.+
T Consensus        84 dYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   84 DYAYYMRGLSYYEQDE   99 (142)
T ss_pred             cHHHHHHHHHHHHHhh
Confidence            5678888888887765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.33  E-value=0.00066  Score=37.54  Aligned_cols=29  Identities=24%  Similarity=0.353  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      .++.++|.++..+|++++|+.+|++++++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            45666777777777777777777777655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.32  E-value=0.0038  Score=51.40  Aligned_cols=101  Identities=17%  Similarity=0.069  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      .|+.+-..|+ .|+|.+|.+.|..=++-|-   +..-.++++.=+|.++. +|+++.|...|...+.-++...+   +-+
T Consensus       144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP---~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K---Apd  216 (262)
T COG1729         144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYP---NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK---APD  216 (262)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHcCC---CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC---ChH
Confidence            4555555555 8899999999998887773   23346778888999999 89999999999999987776554   446


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      .+..+|.+..++|+.++|...|++.+.-|
T Consensus       217 allKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         217 ALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            89999999999999999999999998654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.31  E-value=0.036  Score=47.40  Aligned_cols=142  Identities=11%  Similarity=-0.014  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCchHHHHH--------------HHHHHHHhh-h
Q 026767           11 HMESAAALAKELHNWREVADFYRKASEL--------------YNECGRSQPASDA--------------LAKAARALE-D   61 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g~~~~~a~~--------------l~~lg~~~~-~   61 (233)
                      -...+|.-+...|++..|+..|..|++.              |...|....+..-              -..-|.++. +
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~  119 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence            3456777777789999999999888863              3334443222211              122256666 7


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHH---------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHH
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQM---------AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYL  132 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~---------~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~  132 (233)
                      |.+++|..-|.+-+..-...+....         .-..+.....-+...|++..|+++..+.+++      .+..+..+.
T Consensus       120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~  193 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQ  193 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHH
Confidence            8899998888888776654442111         1122333344455678999999998888876      234455677


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          133 SAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       133 ~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      .-+.||.+.|+...|+.-+..+-.+.
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs  219 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLS  219 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence            78899999999999999888875443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.30  E-value=0.00077  Score=38.88  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNEC   42 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~   42 (233)
                      +.++.++|.+|...|++++|..++++++.++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            5677777777777777888888777777777654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.29  E-value=0.00068  Score=39.11  Aligned_cols=34  Identities=15%  Similarity=0.125  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      +.+++++|.+|..+|++++|..++++++.+.++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            3578899999999999999999999998887664

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.056  Score=46.07  Aligned_cols=189  Identities=11%  Similarity=0.088  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      .+..++|.+|...|+..+-....+..-..+...+.. .++.....+-..+.  .+..+.-+......+++.....+....
T Consensus        49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka-kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLR  127 (411)
T KOG1463|consen   49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKA-KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLR  127 (411)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHH
Confidence            356678888988999988888888888888777766 46666666666655  467778999999999999998866555


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh--cCCCCCCchH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS--QVDAFLRSDQ  165 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al--~~~~~~~~~e  165 (233)
                      -..-.++..+|...++|.+|+......+.-..+..+......++.--..+|....+..+|...+.-|-  ...-++++.-
T Consensus       128 q~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPql  207 (411)
T KOG1463|consen  128 QSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQL  207 (411)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHH
Confidence            55667899999999999999999999888888888877766677777788888889999999888776  2233554433


Q ss_pred             HHHHHHH-HHHH-hcCCHHHHHHHHhhc--ccccchHH
Q 026767          166 NRCATKL-ISAY-TEGDVEEIKRVAQSS--AISNLDHV  199 (233)
Q Consensus       166 ~~~l~~L-~~a~-~~gd~~~a~~~~~~~--~~~~ld~~  199 (233)
                      ...+.-. |-.| +..|+..|-.++-++  -|..++..
T Consensus       208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~  245 (411)
T KOG1463|consen  208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD  245 (411)
T ss_pred             HHHHHHhccceeecccccchHHHHHHHHHccccccCCc
Confidence            3322222 1123 458888877777766  67777663

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.24  E-value=0.016  Score=53.02  Aligned_cols=157  Identities=11%  Similarity=0.045  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL   90 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~   90 (233)
                      |..+-.+|- .++|...+...+.-+.-+-+.      ..++.-.|..+. .|+-++|..+.+.++..     +...- -|
T Consensus        11 F~~~lk~yE-~kQYkkgLK~~~~iL~k~~eH------geslAmkGL~L~~lg~~~ea~~~vr~glr~-----d~~S~-vC   77 (700)
T KOG1156|consen   11 FRRALKCYE-TKQYKKGLKLIKQILKKFPEH------GESLAMKGLTLNCLGKKEEAYELVRLGLRN-----DLKSH-VC   77 (700)
T ss_pred             HHHHHHHHH-HHHHHhHHHHHHHHHHhCCcc------chhHHhccchhhcccchHHHHHHHHHHhcc-----Ccccc-hh
Confidence            344444443 667777777777766643333      344555688888 79999999999999873     32222 49


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT  170 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~  170 (233)
                      ++.+|.++....+|++|+.+|+.|+.+      .+..-..+..++....+++++........+.+++..    .......
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~----~~ra~w~  147 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP----SQRASWI  147 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh----hhHHHHH
Confidence            999999999999999999999999975      334456788999999999999988888777764431    1122222


Q ss_pred             HHHHH-HhcCCHHHHHHHHhhc
Q 026767          171 KLISA-YTEGDVEEIKRVAQSS  191 (233)
Q Consensus       171 ~L~~a-~~~gd~~~a~~~~~~~  191 (233)
                      .++-+ +..|+...|...++++
T Consensus       148 ~~Avs~~L~g~y~~A~~il~ef  169 (700)
T KOG1156|consen  148 GFAVAQHLLGEYKMALEILEEF  169 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            23332 3678888888888877

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.014  Score=48.74  Aligned_cols=93  Identities=13%  Similarity=0.084  Sum_probs=45.4

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhHccCcch
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE---KYADAATFLLRWGLAADKCNATNS  126 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~  126 (233)
                      -|.-+|.+|. .|++..|...|.+|+.+..+..      ..+..+|.++..+.   .-.++...+.+++.+      .+.
T Consensus       158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~------~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~------D~~  225 (287)
T COG4235         158 GWDLLGRAYMALGRASDALLAYRNALRLAGDNP------EILLGLAEALYYQAGQQMTAKARALLRQALAL------DPA  225 (287)
T ss_pred             hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc------CCc
Confidence            3444555555 4555555555555555544321      23334444443321   333455555555532      333


Q ss_pred             HHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          127 QCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       127 ~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ..++++-++..++..|||.+|...|+..+
T Consensus       226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL  254 (287)
T COG4235         226 NIRALSLLAFAAFEQGDYAEAAAAWQMLL  254 (287)
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            34445555555555555555555555554

>PRK11906 transcriptional regulator; Provisional

Probab=97.21  E-value=0.024  Score=50.30  Aligned_cols=146  Identities=7%  Similarity=0.049  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026767           25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-D---------AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAA   94 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---------g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~l   94 (233)
                      .+.|+.+|.+|+...  ..|| .-+.++.-++.++. .         .+..+|.++.++|+++-+..      +.++..+
T Consensus       274 ~~~Al~lf~ra~~~~--~ldp-~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D------a~a~~~~  344 (458)
T PRK11906        274 IYRAMTIFDRLQNKS--DIQT-LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD------GKILAIM  344 (458)
T ss_pred             HHHHHHHHHHHhhcc--cCCc-ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC------HHHHHHH
Confidence            346777777776221  1122 22344444444433 1         23456777777887776543      3688899


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 026767           95 TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLIS  174 (233)
Q Consensus        95 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~  174 (233)
                      |.++.-.++++.|+..|++|+.+      .++.+.++...|.++...|+.++|.+.+++++.+.-+  ...+.++....+
T Consensus       345 g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~--~~~~~~~~~~~~  416 (458)
T PRK11906        345 GLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR--RRKAVVIKECVD  416 (458)
T ss_pred             HHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch--hhHHHHHHHHHH
Confidence            99999999999999999999976      4566788999999999999999999999999865422  123445666666


Q ss_pred             HHhcCCHHHHHHH
Q 026767          175 AYTEGDVEEIKRV  187 (233)
Q Consensus       175 a~~~gd~~~a~~~  187 (233)
                      .|-..-.+.+...
T Consensus       417 ~~~~~~~~~~~~~  429 (458)
T PRK11906        417 MYVPNPLKNNIKL  429 (458)
T ss_pred             HHcCCchhhhHHH
Confidence            7733334444433

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.033  Score=49.57  Aligned_cols=178  Identities=10%  Similarity=0.017  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRS----QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~----~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      .++++..+-.-.|++.+|++-.....+.+.+.-.+    ...+....-+|.... -+.++.|..+|..|...-...+-  
T Consensus       325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl--  402 (629)
T KOG2300|consen  325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL--  402 (629)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH--
Confidence            45666666566899999999999999988776552    345666666777666 58899999999999888776543  


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC--C
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAA-DKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL--R  162 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~--~  162 (233)
                       -+.+-.|++.+|++.|+-+.--+.++..-... .......-.+.+++.-|.....++++.+|...+.+.+.+..-.  .
T Consensus       403 -~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~  481 (629)
T KOG2300|consen  403 -QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLN  481 (629)
T ss_pred             -HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHH
Confidence             34578899999999886554433333221110 0011123456677888899999999999999999998665422  2


Q ss_pred             chHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .-.+-.|.-|+..+ ..||..+++..++-+
T Consensus       482 rL~a~~LvLLs~v~lslgn~~es~nmvrpa  511 (629)
T KOG2300|consen  482 RLTACSLVLLSHVFLSLGNTVESRNMVRPA  511 (629)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence            33344566677666 689999988887776

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.19  E-value=0.0012  Score=36.29  Aligned_cols=31  Identities=26%  Similarity=0.302  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELY   39 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~   39 (233)
                      |+++..+|.+|...|++++|+.+|++|+.+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            3455666666666666666666666666553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.012  Score=49.91  Aligned_cols=113  Identities=15%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 026767           35 ASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLR  113 (233)
Q Consensus        35 A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~  113 (233)
                      ++..--.-|+++..|..+..=|.-|. ..+|..|+..|.+++.-  ..+++...+.+|.|-+-+...+|+|..|+.-+.+
T Consensus        67 slK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~  144 (390)
T KOG0551|consen   67 SLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSA  144 (390)
T ss_pred             HhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333355677777777777777666 57777777777776643  4445555556777777777777777777777777


Q ss_pred             HHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          114 WGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       114 al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ++.+      .+...+++..-+.|++.+.++..|..-.++.+
T Consensus       145 al~~------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  145 ALKL------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGL  180 (390)
T ss_pred             HHhc------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            7643      34445666666777777777666666666654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.12  E-value=0.015  Score=50.29  Aligned_cols=117  Identities=15%  Similarity=0.044  Sum_probs=68.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 026767           18 LAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNV   97 (233)
Q Consensus        18 ~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~   97 (233)
                      -+-+.|++++|.....+++.-   ..|+.     +...-....-+++..=++..++.+....+..      ..+..+|.+
T Consensus       272 ~li~l~~~~~A~~~i~~~Lk~---~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p------~L~~tLG~L  337 (400)
T COG3071         272 RLIRLGDHDEAQEIIEDALKR---QWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP------LLLSTLGRL  337 (400)
T ss_pred             HHHHcCChHHHHHHHHHHHHh---ccChh-----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh------hHHHHHHHH
Confidence            344566666666666665543   33333     1111111222555555555555555444332      356677777


Q ss_pred             HHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           98 YIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        98 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      +.+.+.|.+|.++|+.|+..       ...+..+.-++.++.++|+..+|...+++++
T Consensus       338 ~~k~~~w~kA~~~leaAl~~-------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         338 ALKNKLWGKASEALEAALKL-------RPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHhhHHHHHHHHHHHHHhc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            77777777777777766643       2234456677777777777777777777776

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.094  Score=47.69  Aligned_cols=133  Identities=11%  Similarity=0.135  Sum_probs=81.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH----------------------
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA----------------------  118 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------  118 (233)
                      .+..++|+..+.    ......     -.++.--+.++.++|+|++|++.|+..+.-.                      
T Consensus        92 lnk~Dealk~~~----~~~~~~-----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~  162 (652)
T KOG2376|consen   92 LNKLDEALKTLK----GLDRLD-----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ  162 (652)
T ss_pred             cccHHHHHHHHh----cccccc-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence            466666666665    111111     1366677899999999999999999864311                      


Q ss_pred             --hHccCcc-hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC--C---CCc-hHHH-----HHHHHHHHH-hcCCHHH
Q 026767          119 --DKCNATN-SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA--F---LRS-DQNR-----CATKLISAY-TEGDVEE  183 (233)
Q Consensus       119 --~~~~~~~-~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~--~---~~~-~e~~-----~l~~L~~a~-~~gd~~~  183 (233)
                        ....... +--..++|.+.++...|+|.+|++.++.++.+.+  +   ... ++..     +-..|.-++ ..|+.++
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence              1111111 1223458999999999999999999999953321  1   111 2222     334455555 5899999


Q ss_pred             HHHHHhhc-ccccchHHHHH
Q 026767          184 IKRVAQSS-AISNLDHVIIK  202 (233)
Q Consensus       184 a~~~~~~~-~~~~ld~~~~~  202 (233)
                      +......- --...|.+...
T Consensus       243 a~~iy~~~i~~~~~D~~~~A  262 (652)
T KOG2376|consen  243 ASSIYVDIIKRNPADEPSLA  262 (652)
T ss_pred             HHHHHHHHHHhcCCCchHHH
Confidence            98876666 33334444333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.10  E-value=0.0016  Score=35.76  Aligned_cols=29  Identities=14%  Similarity=0.228  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      .++..+|.++..+|+|++|+.+|++++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45667777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.07  E-value=0.02  Score=54.83  Aligned_cols=134  Identities=16%  Similarity=0.145  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      |-++.-+|.+|. -.|.-.|-++|.+|-++-...      +.+-..++++|.+..+++.|...+.++.+...    ....
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatd------aeaaaa~adtyae~~~we~a~~I~l~~~qka~----a~~~  561 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATD------AEAAAASADTYAEESTWEEAFEICLRAAQKAP----AFAC  561 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhccccHHHHHHHHHHHhhhch----HHHH
Confidence            334444455554 234445555555554443211      12223344444555555554444322221110    0011


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccc
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNL  196 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~l  196 (233)
                      -..+...|..|+..+++..|+..|+.++.+.    +.......+||++| +.|....|.....++ ++++.
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~d----PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTD----PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL  628 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCC----chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence            1123347788888888888888888887332    23356777889999 889999988888888 44443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.06  E-value=0.041  Score=49.67  Aligned_cols=170  Identities=12%  Similarity=0.012  Sum_probs=113.2

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHH----HHHHHHhh------hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDAL----AKAARALE------DAVPEDAIQLYTDACIMLEEDDKEQMAFDL   90 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l----~~lg~~~~------~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~   90 (233)
                      -.||-+.++.+..+|.+    .++..+.--.+    ........      ..+.+.|.+........|++.      +--
T Consensus       200 F~gdR~~GL~~L~~~~~----~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s------~lf  269 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASK----SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS------ALF  269 (468)
T ss_pred             cCCcHHHHHHHHHHHhc----cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc------HHH
Confidence            36889999999998865    23332222111    11122111      135567777777777777752      246


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT  170 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~  170 (233)
                      +...|.++...|+.++|++.|++++..  +...+....-+++.++.++..+.++.+|.++|.+.....   .|..+-..-
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s---~WSka~Y~Y  344 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIES--QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES---KWSKAFYAY  344 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc---ccHHHHHHH
Confidence            778899999999999999999999853  233445556778999999999999999999999987543   233333333


Q ss_pred             HHHHHH-hcCCHHHHHHHHhhc--ccccchHHHHHHhc
Q 026767          171 KLISAY-TEGDVEEIKRVAQSS--AISNLDHVIIKLAR  205 (233)
Q Consensus       171 ~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~~~~l~~  205 (233)
                      ..+-.+ ..|+.+.+.+..+++  .|...+.-..++..
T Consensus       345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g  382 (468)
T PF10300_consen  345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG  382 (468)
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence            334444 677776666666666  66666665555444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.0091  Score=50.57  Aligned_cols=108  Identities=12%  Similarity=0.162  Sum_probs=94.7

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      +++...|..|..=|+-|....+|..|+.+|.+++.  .+.+|+.--+.+|.|-+-+.. .|+|..|+.-..+|+.+-+. 
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-  151 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-  151 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-
Confidence            57888999999999999999999999999999976  578999999999999988877 89999999999999877653 


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                           -..++.+-+.+++++.+++.|...++..+.+.
T Consensus       152 -----h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  152 -----HLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             -----hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                 23678888999999999999999999887553

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.03  E-value=0.15  Score=42.66  Aligned_cols=133  Identities=16%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHhh-hC-CHHHHHHHHHHHHHHHHh-c--C-----ChHH
Q 026767           20 KELHNWREVADFYRKASELYNECGRS---QPASDALAKAARALE-DA-VPEDAIQLYTDACIMLEE-D--D-----KEQM   86 (233)
Q Consensus        20 ~~~g~~~eA~~~~~~A~~l~~~~g~~---~~~a~~l~~lg~~~~-~g-~~~~A~~~~~~Al~~~~~-~--g-----~~~~   86 (233)
                      ...||++.|..++.|+-.+.. ..++   ...+..+.++|.-.. .+ +++.|+.|+++|.++... .  +     -...
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            458999999999999999875 4444   456778999999888 78 999999999999999755 1  1     1134


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH-ccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADK-CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ...++..++.+|...+.++.... ..+++..... .++++.   .+.--..+....++.+.+.+.+.+.+..
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~~~~---~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGNKPE---VFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCCCcH---HHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            45789999999999988864444 3344444433 233222   2222222333378999999999988733

It is also involved in sporulation [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.03  E-value=0.076  Score=49.54  Aligned_cols=145  Identities=13%  Similarity=0.086  Sum_probs=100.6

Q ss_pred             CchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           44 RSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        44 ~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      .+...+.+..++|.++. . .+++.|..+++|++.+.++.+-......+-.-++.++.+.+... |...+.+.++.++..
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~  132 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY  132 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence            36788999999999998 4 89999999999999999885533333455666799999888887 999999999988764


Q ss_pred             cCcchHHHhHHHHHHH--HHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH---hcCCHHHHHHHHhhc
Q 026767          122 NATNSQCKAYLSAIIV--YLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY---TEGDVEEIKRVAQSS  191 (233)
Q Consensus       122 ~~~~~~a~~~~~lg~~--~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~---~~gd~~~a~~~~~~~  191 (233)
                      +.....  ..+.+..+  ++..+|+..|.+.++.....+...+.....++-.+.++.   ..+.++.+.+.+++.
T Consensus       133 ~~~~w~--~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~  205 (608)
T PF10345_consen  133 GHSAWY--YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA  205 (608)
T ss_pred             CchhHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence            333221  12333322  222389999999999987666544445555555555533   355555555555544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.13  Score=42.20  Aligned_cols=157  Identities=14%  Similarity=0.089  Sum_probs=92.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY   91 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l   91 (233)
                      ++...+....|+.+-|..|+.+-..-|  -    +.-++..--|..++ .|++++|+++|+.-++=-     +...+ ++
T Consensus        56 EqV~IAAld~~~~~lAq~C~~~L~~~f--p----~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-----pt~~v-~~  123 (289)
T KOG3060|consen   56 EQVFIAALDTGRDDLAQKCINQLRDRF--P----GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-----PTDTV-IR  123 (289)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhC--C----CChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-----cchhH-HH
Confidence            333334444444445544444443333  1    11222333366666 677777777777655322     22222 33


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATK  171 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~  171 (233)
                      .+---+.-.+|+--+|++.+..-++.|-.+      ..++..++.+|+..|+|.+|.-|+++.+-+.-|    .......
T Consensus       124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~----n~l~f~r  193 (289)
T KOG3060|consen  124 KRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF----NPLYFQR  193 (289)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC----cHHHHHH
Confidence            333334445677777877777777665432      346778899999999999999999998855544    3456677


Q ss_pred             HHHHH-h---cCCHHHHHHHHhhc
Q 026767          172 LISAY-T---EGDVEEIKRVAQSS  191 (233)
Q Consensus       172 L~~a~-~---~gd~~~a~~~~~~~  191 (233)
                      +++.+ -   ..+.+.+++++.++
T Consensus       194 lae~~Yt~gg~eN~~~arkyy~~a  217 (289)
T KOG3060|consen  194 LAEVLYTQGGAENLELARKYYERA  217 (289)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHH
Confidence            77754 3   34566677777777

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.97  E-value=0.0025  Score=35.03  Aligned_cols=30  Identities=20%  Similarity=0.397  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELY   39 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~   39 (233)
                      +++..+|.+|..+|++++|+.+|++++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            445555555555555555555555555543

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.89  E-value=0.027  Score=47.28  Aligned_cols=131  Identities=11%  Similarity=0.096  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH-hh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARA-LE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~-~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      +|....+..++.+..+.|...|.+|.    +.  ....-.+|...|.+ |. .++.+.|...|+++++.|....      
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~----~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------   70 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRAR----KD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------   70 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----CC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------
Confidence            56677788888888999999999995    22  22344678888888 44 4788889999999999998754      


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      ..+..+...++..++.+.|..+|++++..   .......-..+.....--..-|+.+...+...++..
T Consensus        71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   71 DFWLEYLDFLIKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35566778889999999999999999864   222221233556666666777999888888877763

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.85  E-value=0.0034  Score=34.53  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      .++..+|.++..+|++++|+.+|++++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            456677777777777777777777777653

...

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.85  E-value=0.11  Score=47.79  Aligned_cols=187  Identities=12%  Similarity=-0.018  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH---------HHHhhh-------CCHHHHH
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKA---------ARALED-------AVPEDAI   68 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~l---------g~~~~~-------g~~~~A~   68 (233)
                      +...+..+.++|.-|-+.|++++|.+.|++|+.--....|+...-+++...         +..-..       .+.+-.+
T Consensus       244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~  323 (835)
T KOG2047|consen  244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM  323 (835)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence            356778899999999999999999999999999776666666555444332         210001       1334455


Q ss_pred             HHHHHHHHHHHhcCChHHHH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH
Q 026767           69 QLYTDACIMLEEDDKEQMAF----DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF  144 (233)
Q Consensus        69 ~~~~~Al~~~~~~g~~~~~~----~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~  144 (233)
                      ..|+..++...-.=+.....    .+-.-+-.+-+..|++.+-+..|.+|+.-.......-.....+..++..|-..|+.
T Consensus       324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l  403 (835)
T KOG2047|consen  324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL  403 (835)
T ss_pred             HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence            55555554333211100000    12222334556678999999999999865433333334455678999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          145 KQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       145 ~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +.|+..|+++...+-.....-+.+...-++.- ...+++.|.+..+++
T Consensus       404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A  451 (835)
T KOG2047|consen  404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA  451 (835)
T ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence            99999999998665433333344555555543 567888888888887

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.33  Score=43.47  Aligned_cols=168  Identities=11%  Similarity=0.033  Sum_probs=120.1

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHH--------HHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC----hHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDAL--------AKAARALE-DAVPEDAIQLYTDACIMLEEDDK----EQMA   87 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l--------~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~----~~~~   87 (233)
                      ..|-+++|..+-++++....+....++...++        .++..+-. .|++.+|++-.....+++.....    +...
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            46778999999999999988877776555544        34444444 59999999999999999998775    3445


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC---ch
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR---SD  164 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~---~~  164 (233)
                      +.+..-+|......+.|+.|...|..+..+..+.   ...+.+-.+++.+|+..|+-+.-.+.++..--...+.-   ..
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~---dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI---DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH---HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHH
Confidence            5677778888888999999999999998765543   33667779999999998876555555544322222221   23


Q ss_pred             HHHHHHHHH-HHHhcCCHHHHHHHHhhc
Q 026767          165 QNRCATKLI-SAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       165 e~~~l~~L~-~a~~~gd~~~a~~~~~~~  191 (233)
                      ++.++-.-| -++..+|..+|...+.+-
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~  471 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRET  471 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            333333333 356789999999888776

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.11  Score=45.38  Aligned_cols=175  Identities=13%  Similarity=0.014  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      +|+.|.-+..+|...++...-...+..-+....-..|..+++...+-+=..|. .+.|++|-..-.++.  |++......
T Consensus       168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne  245 (493)
T KOG2581|consen  168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNE  245 (493)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHH
Confidence            56666667777777777666655555555555545588888888888888888 788888888777664  333333334


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                      .+..+.-+|.+..-+++|..|.+++.+|+.........-..-.+..-+..+.+-+|++++=.-..+-.+       ..--
T Consensus       246 ~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~-------~ksL  318 (493)
T KOG2581|consen  246 WARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGM-------RKSL  318 (493)
T ss_pred             HHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccH-------HHHH
Confidence            567888999999999999999999999987543211111112233344455556676553211111100       0011


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          167 RCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      ...-.|..+.+.||...|.+.++++
T Consensus       319 ~~Yf~Lt~AVr~gdlkkF~~~leq~  343 (493)
T KOG2581|consen  319 RPYFKLTQAVRLGDLKKFNETLEQF  343 (493)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            2334566677778888888887777

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.77  E-value=0.035  Score=46.89  Aligned_cols=125  Identities=12%  Similarity=0.100  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh---hC--CHHHHHHHHHHHHHHHHhcCChH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE---DA--VPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~---~g--~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      +..-.-.+|..++|++.|...++..    .+.++-    .++.+++..+.   .|  .+.+|.-.|++-.+.+.   .  
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~----~~~~eD----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~---~--  199 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNM----QQIDED----SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG---S--  199 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH----HCCSCC----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH----HhcCCc----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC---C--
Confidence            3334456777899999988777664    333333    23444544433   23  58888888888544332   1  


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH-HHHHHHHHHhh
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF-KQAEKCYNDCS  155 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~-~~A~~~~~~al  155 (233)
                       -..+++.++.+++.+|+|++|.+.+++++..      .+....++.|++.+...+|+. +.+.+++.+..
T Consensus       200 -t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  200 -TPKLLNGLAVCHLQLGHYEEAEELLEEALEK------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence             2357899999999999999999999998742      233456888999999999998 55666777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.018  Score=48.04  Aligned_cols=100  Identities=18%  Similarity=0.072  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---CCHHHHHHHHHHHHHHHHhcC
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D---AVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      +-++.|.-+|.+|...|+++.|...|.+|.++.   |+.   ...+..+|.++. .   ....++...+.+++..-..  
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n---~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~--  225 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDN---PEILLGLAEALYYQAGQQMTAKARALLRQALALDPA--  225 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc--
Confidence            345678899999999999999999999999885   433   344566677766 3   3567899999999876543  


Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                          ...++.-+|..+.+.|+|.+|+..++..+...
T Consensus       226 ----~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         226 ----NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             ----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence                23578889999999999999999999998764

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.76  E-value=0.16  Score=50.59  Aligned_cols=156  Identities=9%  Similarity=0.031  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      +|.|+-++|   |.-+.-..-|++|.+..       .+-.++..+..+|. -+.+++|.++|+.-++-|++.      -.
T Consensus      1502 A~lNlEn~y---G~eesl~kVFeRAcqyc-------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~------~~ 1565 (1710)
T KOG1070|consen 1502 AYLNLENAY---GTEESLKKVFERACQYC-------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT------RK 1565 (1710)
T ss_pred             HHHhHHHhh---CcHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch------hh
Confidence            444554444   55556667778877664       45678899999999 699999999999999888842      25


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRC  168 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~  168 (233)
                      ++..++..+++..+-..|...+.+|+....+    +.........+...++.||.++++..|+..+ ..|...     .+
T Consensus      1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt-----Dl 1636 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT-----DL 1636 (1710)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch-----hH
Confidence            7888999999999999999999999976543    2223345677888899999999999999887 444332     22


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          169 ATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..-.++.- ..||..-++..+++.
T Consensus      1637 W~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHH
Confidence            33334433 578888888888877

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.75  E-value=0.14  Score=42.70  Aligned_cols=182  Identities=13%  Similarity=0.177  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      +++.++-.++..++++++-.+.|.+-+...+..=...-.-.+.+++-.... ..+.+--.++|+..++..++..+.+.-.
T Consensus        66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWF  145 (440)
T KOG1464|consen   66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWF  145 (440)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeee
Confidence            567777778888999999999999988876653322222233333333222 2344444455555555555444333222


Q ss_pred             HHHHHHHHHHHHhccHHHHH----------------------------------------------HHHHHHHHHHhHcc
Q 026767           89 DLYRAATNVYIKLEKYADAA----------------------------------------------TFLLRWGLAADKCN  122 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~----------------------------------------------~~~~~al~~~~~~~  122 (233)
                      .+-..+|.+|...|+|.+-.                                              .+|++++.+-..+.
T Consensus       146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP  225 (440)
T KOG1464|consen  146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP  225 (440)
T ss_pred             eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence            33444555555444444433                                              33444444333333


Q ss_pred             CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc---------------------------CCCC--------CCchHHH
Q 026767          123 ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ---------------------------VDAF--------LRSDQNR  167 (233)
Q Consensus       123 ~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~---------------------------~~~~--------~~~~e~~  167 (233)
                      .+...+...-.=|..|++.|++.+|-.-|=+|..                           +..|        ....|--
T Consensus       226 HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIl  305 (440)
T KOG1464|consen  226 HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEIL  305 (440)
T ss_pred             chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHH
Confidence            3333332223335567777888877654433320                           1111        1346677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          168 CATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       168 ~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      ++.+|..+|..+|..+|+..++..
T Consensus       306 AMTnlv~aYQ~NdI~eFE~Il~~~  329 (440)
T KOG1464|consen  306 AMTNLVAAYQNNDIIEFERILKSN  329 (440)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhh
Confidence            899999999999999999988866

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.75  E-value=0.036  Score=51.05  Aligned_cols=143  Identities=11%  Similarity=0.059  Sum_probs=95.2

Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 026767           33 RKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFL  111 (233)
Q Consensus        33 ~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~  111 (233)
                      ++|-.++.+.-...+..+++.+-+.+.. ++..++|+++++++++.|+...      ..+.-+|.++.++++.+.|.+.|
T Consensus       635 eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~------Kl~lmlGQi~e~~~~ie~aR~aY  708 (913)
T KOG0495|consen  635 ERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH------KLWLMLGQIEEQMENIEMAREAY  708 (913)
T ss_pred             HHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH------HHHHHHhHHHHHHHHHHHHHHHH
Confidence            3333344444445566777877777777 7899999999999999888654      45667888888899999998888


Q ss_pred             HHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 026767          112 LRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQS  190 (233)
Q Consensus       112 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~  190 (233)
                      ...+..|-.      -.-.+..++.+--..|...+|+..++++. ..+..    ..-.|..+---++.|..+.|.....+
T Consensus       709 ~~G~k~cP~------~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~----~~lwle~Ir~ElR~gn~~~a~~lmak  778 (913)
T KOG0495|consen  709 LQGTKKCPN------SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN----ALLWLESIRMELRAGNKEQAELLMAK  778 (913)
T ss_pred             HhccccCCC------CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc----chhHHHHHHHHHHcCCHHHHHHHHHH
Confidence            877755421      12245677777777788888888888875 33321    11122222222367777777766666


Q ss_pred             c
Q 026767          191 S  191 (233)
Q Consensus       191 ~  191 (233)
                      +
T Consensus       779 A  779 (913)
T KOG0495|consen  779 A  779 (913)
T ss_pred             H
Confidence            5

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.70  E-value=0.4  Score=45.76  Aligned_cols=181  Identities=12%  Similarity=0.014  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc--C
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED--D   82 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~--g   82 (233)
                      ..-+.++..+|.+..-.|++++|..+..++.++.++.+.+.-+.++....+.++. +|+...|.  -+++-...+..  +
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q~l~  571 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQHLE  571 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHhh
Confidence            3445667778888888999999999999999999999999999999999999999 89433332  23333222222  1


Q ss_pred             -ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH-HhHHHHHHHHHhhCCHHHHHHHHHHhhcCC--
Q 026767           83 -KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC-KAYLSAIIVYLYANDFKQAEKCYNDCSQVD--  158 (233)
Q Consensus        83 -~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~lg~~~~~~gd~~~A~~~~~~al~~~--  158 (233)
                       .+.... .+...+.++...-+++.+..-....+++........... -.+..++.+++..||+++|.....+.....  
T Consensus       572 q~~~~~f-~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~  650 (894)
T COG2909         572 QKPRHEF-LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN  650 (894)
T ss_pred             hcccchh-HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence             122111 222223333323337888777777776654433332222 223589999999999999999998876221  


Q ss_pred             C-CCCchHHHHHHHHHHHH--hcCCHHHHHHHHhh
Q 026767          159 A-FLRSDQNRCATKLISAY--TEGDVEEIKRVAQS  190 (233)
Q Consensus       159 ~-~~~~~e~~~l~~L~~a~--~~gd~~~a~~~~~~  190 (233)
                      . .....-+.+. ...-.+  .+||.+.+..-..+
T Consensus       651 ~~~~~~~~a~~~-~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         651 GQYHVDYLAAAY-KVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             CCCCchHHHHHH-HhhHHHhcccCCHHHHHHHHHh
Confidence            1 1212222211 111123  58998888877666

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.062  Score=44.45  Aligned_cols=137  Identities=15%  Similarity=0.079  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL   90 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~   90 (233)
                      ...+..++.-.|.|.-.++.+.+-.+     .++...-.....+|.+-. -||.+.|-.++++.-+-....+.-.+...+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V  254 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV  254 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence            33444444445666666676666665     334455566777888877 488888888888655444444444445567


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCC
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDA  159 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~  159 (233)
                      ..+.+.+|+-..+|..|...|.+.+..      ....+.+-++-++|.+.+|+...|++..+.++ .+|+
T Consensus       255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  255 LMNSAFLHLGQNNFAEAHRFFTEILRM------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HhhhhhheecccchHHHHHHHhhcccc------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            788888888888998888888877642      12223345777888888899999999998887 4453

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.65  E-value=0.074  Score=39.85  Aligned_cols=89  Identities=18%  Similarity=0.116  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..+.+-|.-..+.|+|.+|+..++.-..-|-- |.  -+-.+...++.+|. .+++++|+..+++=+++++...+..  
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~--ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd--   84 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GE--YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD--   84 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-Cc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc--
Confidence            344555566666689999999999887776632 22  23466788999999 7999999999999999999887643  


Q ss_pred             HHHHHHHHHHHHHhcc
Q 026767           88 FDLYRAATNVYIKLEK  103 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~  103 (233)
                       .++...|.++..+..
T Consensus        85 -Ya~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   85 -YAYYMRGLSYYEQDE   99 (142)
T ss_pred             -HHHHHHHHHHHHHhh
Confidence             367777777776655

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.64  E-value=0.087  Score=44.12  Aligned_cols=17  Identities=18%  Similarity=0.167  Sum_probs=8.8

Q ss_pred             CHHHHHHHHHHHHHHHH
Q 026767           63 VPEDAIQLYTDACIMLE   79 (233)
Q Consensus        63 ~~~~A~~~~~~Al~~~~   79 (233)
                      ++.+|..||++|.+.--
T Consensus       128 d~~~A~~~~~~Aa~~g~  144 (292)
T COG0790         128 DLVKALKYYEKAAKLGN  144 (292)
T ss_pred             CHHHHHHHHHHHHHcCC
Confidence            55555555555555533

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.64  E-value=0.0093  Score=50.88  Aligned_cols=93  Identities=15%  Similarity=0.061  Sum_probs=68.4

Q ss_pred             HHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH
Q 026767           53 AKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY  131 (233)
Q Consensus        53 ~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~  131 (233)
                      ..-|.-|. +|.|++||.+|.+++..++-..      -.+.|-+..|.++.++..|..-|..|+.+-      ..-.++|
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------~~Y~KAY  168 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALD------KLYVKAY  168 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhh------HHHHHHH
Confidence            34455566 7888999999998888776322      256677888888888888888888888652      2334567


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          132 LSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       132 ~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ..-+.+...+|...+|.+-++.++.+
T Consensus       169 SRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  169 SRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            77777788888888888888887744

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.60  E-value=0.065  Score=50.17  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHH-------------------HHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHH
Q 026767           92 RAATNVYIKLEKYADAATFLLRW-------------------GLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYN  152 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~  152 (233)
                      ..-|.-+...|+++.|+-+|-++                   +.+...+.++.....-|-.++.-|...|+|+.|.+.|.
T Consensus       710 e~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~  789 (1636)
T KOG3616|consen  710 EAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFT  789 (1636)
T ss_pred             HHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHH
Confidence            33466677788888888877553                   33334445566666666778888889999999999887


Q ss_pred             Hh
Q 026767          153 DC  154 (233)
Q Consensus       153 ~a  154 (233)
                      ++
T Consensus       790 e~  791 (1636)
T KOG3616|consen  790 EA  791 (1636)
T ss_pred             hc
Confidence            76

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.025  Score=47.53  Aligned_cols=154  Identities=11%  Similarity=0.005  Sum_probs=95.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767           22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK  100 (233)
Q Consensus        22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~  100 (233)
                      ..+|..|+++..-    +.+......+  .+.-+|.+|. ..++..|..+|++-..++++....+      .-.+..+.+
T Consensus        23 d~ry~DaI~~l~s----~~Er~p~~rA--gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr------lY~AQSLY~   90 (459)
T KOG4340|consen   23 DARYADAIQLLGS----ELERSPRSRA--GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR------LYQAQSLYK   90 (459)
T ss_pred             HhhHHHHHHHHHH----HHhcCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH------HHHHHHHHH
Confidence            4456666655432    2222222222  3667899999 7999999999999998888754221      222333334


Q ss_pred             hccHHHHHHHHHH----------------HHHHHhHc--------cCc--chHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767          101 LEKYADAATFLLR----------------WGLAADKC--------NAT--NSQCKAYLSAIIVYLYANDFKQAEKCYNDC  154 (233)
Q Consensus       101 ~g~~~~A~~~~~~----------------al~~~~~~--------~~~--~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a  154 (233)
                      .+.|..|+.....                ++....+.        ...  .+.+.+..+.|.+..+.|.|+.|.+-|+.+
T Consensus        91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA  170 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA  170 (459)
T ss_pred             hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence            4444444433322                11111100        111  245667889999999999999999999999


Q ss_pred             hcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          155 SQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       155 l~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++..+|.+    -+..+++-++ ..++...|.+++.+-
T Consensus       171 lqvsGyqp----llAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  171 LQVSGYQP----LLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             HhhcCCCc----hhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            98887743    2333455555 788888888777665

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.15  Score=41.70  Aligned_cols=105  Identities=16%  Similarity=0.084  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc------CChH------HHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEED------DKEQ------MAFDLYRAATNVYIKLEKYADAATFLLR  113 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~------g~~~------~~~~~l~~lg~~~~~~g~~~~A~~~~~~  113 (233)
                      .+.-++..-|.-+. .|+|.+|...|+.|+...+..      |++.      ...-.+.|+..+++..|+|-++++++..
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            34445666666666 799999999999999887754      2211      1224678999999999999999999998


Q ss_pred             HHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          114 WGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       114 al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      .+..      ..+..++|+.-+.++...=+..+|..-|..++.+
T Consensus       256 iL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  256 ILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             HHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            8864      4567789999999999999999999999999854

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.43  E-value=0.15  Score=45.70  Aligned_cols=125  Identities=13%  Similarity=0.007  Sum_probs=88.3

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhc----------C-------
Q 026767           20 KELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEED----------D-------   82 (233)
Q Consensus        20 ~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~----------g-------   82 (233)
                      ++..+++.-+.+..+|++++.      ..|.+|.-++.=- .....+|.++|++|++..+..          |       
T Consensus       179 WRERnp~aRIkaA~eALei~p------dCAdAYILLAEEe-A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~  251 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINP------DCADAYILLAEEE-ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH  251 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhh------hhhHHHhhccccc-ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence            346788888999999999873      2334333332200 134678888888888776532          1       


Q ss_pred             --ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           83 --KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        83 --~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                        +......+-..++.+.-++|+.++|++.++..+..+    .....-.++.++..+++.++.|.++...+.++-
T Consensus       252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~----p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF----PNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC----CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence              111113456789999999999999999999887543    223344578999999999999999999999874

The molecular function of this protein is uncertain.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.47  Score=39.32  Aligned_cols=111  Identities=15%  Similarity=0.064  Sum_probs=70.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK----LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV  137 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~  137 (233)
                      .+.+-|.+..++..++-.+        .++..++..++.    .+++..|.-+|++.-   .+.+.   ....++..+.|
T Consensus       151 ~r~d~A~~~lk~mq~ided--------~tLtQLA~awv~la~ggek~qdAfyifeE~s---~k~~~---T~~llnG~Av~  216 (299)
T KOG3081|consen  151 HRFDLAEKELKKMQQIDED--------ATLTQLAQAWVKLATGGEKIQDAFYIFEELS---EKTPP---TPLLLNGQAVC  216 (299)
T ss_pred             HHHHHHHHHHHHHHccchH--------HHHHHHHHHHHHHhccchhhhhHHHHHHHHh---cccCC---ChHHHccHHHH
Confidence            4555555555555555443        467777777765    347788888887443   22222   33467889999


Q ss_pred             HHhhCCHHHHHHHHHHhhc-CCCCCCchHHHHHHHHHH-HH-hcCCHHHHHHHHhhc
Q 026767          138 YLYANDFKQAEKCYNDCSQ-VDAFLRSDQNRCATKLIS-AY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       138 ~~~~gd~~~A~~~~~~al~-~~~~~~~~e~~~l~~L~~-a~-~~gd~~~a~~~~~~~  191 (233)
                      ++.+|+|++|...++.++. .+..     ..+|.++.- +. ...|.+.-.+.+.+-
T Consensus       217 ~l~~~~~eeAe~lL~eaL~kd~~d-----petL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  217 HLQLGRYEEAESLLEEALDKDAKD-----PETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHhcCHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            9999999999999999983 3322     455656554 33 355645444444444

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=96.36  E-value=0.17  Score=50.86  Aligned_cols=142  Identities=15%  Similarity=0.075  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---C-------------------
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D---A-------------------   62 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---g-------------------   62 (233)
                      ...++....+|..|...|++.+|+.+|.+|+++.+..+|.-=.|.++..++.+.. .   |                   
T Consensus       239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~  318 (1185)
T PF08626_consen  239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST  318 (1185)
T ss_pred             hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence            3567788899999999999999999999999999999999878888877764422 1   1                   


Q ss_pred             -----------------------------------------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767           63 -----------------------------------------VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL  101 (233)
Q Consensus        63 -----------------------------------------~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~  101 (233)
                                                               .+++++.+|.++.....+.--..-..++..+++.++...
T Consensus       319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~  398 (1185)
T PF08626_consen  319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ  398 (1185)
T ss_pred             CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence                                                     134455555555433333333334457888888888888


Q ss_pred             c--------------------cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHH
Q 026767          102 E--------------------KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQA  147 (233)
Q Consensus       102 g--------------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A  147 (233)
                      .                    .-.++.++..++..+....-........|..++.+|-..|-..+.
T Consensus       399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~  464 (1185)
T PF08626_consen  399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKK  464 (1185)
T ss_pred             hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHH
Confidence            7                    778888888888776544333445556667777777666654443

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.32  E-value=0.013  Score=34.48  Aligned_cols=28  Identities=21%  Similarity=0.184  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ++..+|.+|..+|++++|++.|++++..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5677888888888888888888888865

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.29  E-value=0.085  Score=43.87  Aligned_cols=131  Identities=11%  Similarity=0.025  Sum_probs=103.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767           23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL  101 (233)
Q Consensus        23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~  101 (233)
                      ..+++|+.-|++.+++--+.|+..  -.++..+-.+.. .+++++-++.|.+-+.+.+..-.+...-.+.+++-+.-.-.
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWG--FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWG--FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            478999999999999976666653  456788888888 89999999999999999886543333335777777766667


Q ss_pred             ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          102 EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       102 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      .+.+--.++|+.-+...++..+.+-.-++-..+|.+++..|+|.+-.+.+.+..
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh  172 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH  172 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence            777777788888888877777776666777899999999999999888877765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.26  E-value=0.0047  Score=34.38  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH
Q 026767          110 FLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE  148 (233)
Q Consensus       110 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~  148 (233)
                      +|++++++      .+..+.+++++|.++...|++++|+
T Consensus         1 ~y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            36777765      4556778999999999999999886

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.26  E-value=0.058  Score=53.06  Aligned_cols=152  Identities=15%  Similarity=0.039  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNEC--GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~--g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      ....++.|..++.++...++.++|+.+-.+|.-++.+.  -|.......+.+++.... ......|+..+.++..+..=.
T Consensus       969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen  969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred             chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence            34678899999999999999999999999999988763  345667788889987766 688889999999988775422


Q ss_pred             ---CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch--HHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           82 ---DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS--QCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        82 ---g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                         ..+.. +.+..+++.++...++++.|+.+.+.|..+......+..  .+.++..++.++-.++++..|..+......
T Consensus      1049 ~ge~hP~~-a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1049 SGEDHPPT-ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             cCCCCCch-hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence               23333 457899999999999999999999999987766544322  344567778888888888888887776653


Q ss_pred             C
Q 026767          157 V  157 (233)
Q Consensus       157 ~  157 (233)
                      +
T Consensus      1128 i 1128 (1236)
T KOG1839|consen 1128 I 1128 (1236)
T ss_pred             H
Confidence            3

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.26  E-value=0.52  Score=38.76  Aligned_cols=171  Identities=11%  Similarity=0.082  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      .-+-+=|..-.+.|++++|+.+|+...  .+--+++.. =.+...++..+. .+++++|+....+=+.+++...+-.-  
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY--  109 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALD--SRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY--  109 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH--
Confidence            334444555556899999999998877  333455543 566777888888 79999999999999999998776443  


Q ss_pred             HHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHhHccCcc--------------hHHHhHHHHHHHHHhhCCHHHHHH
Q 026767           89 DLYRAATNVYIK-----LEKYADAATFLLRWGLAADKCNATN--------------SQCKAYLSAIIVYLYANDFKQAEK  149 (233)
Q Consensus        89 ~~l~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~--------------~~a~~~~~lg~~~~~~gd~~~A~~  149 (233)
                       ++.-.|..+..     ..|...+...+...-++..+-.+.+              ..+.--..+|..|++.|.+..|..
T Consensus       110 -~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n  188 (254)
T COG4105         110 -AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN  188 (254)
T ss_pred             -HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence             34444444432     2344444444433333333332221              122223778999999999999999


Q ss_pred             HHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHH
Q 026767          150 CYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRV  187 (233)
Q Consensus       150 ~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~  187 (233)
                      .+++.+.... ..+.....|-.|.++| ..|-.+.|...
T Consensus       189 R~~~v~e~y~-~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         189 RFEEVLENYP-DTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             HHHHHHhccc-cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            9999884421 2234455777888888 66666555543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.25  E-value=0.003  Score=35.20  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Q 026767           70 LYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAAT  109 (233)
Q Consensus        70 ~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~  109 (233)
                      +|++|+++.+..      ..+++++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhcC
Confidence            377888887753      3689999999999999999863

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.25  E-value=0.7  Score=40.22  Aligned_cols=129  Identities=13%  Similarity=0.121  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      |....+-|.+-..-|+|.+|.....++.+.    +  ..-..++...+..-. .||.+.+-.|..++.+.....   .. 
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~----~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~---~l-  153 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEH----G--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD---TL-  153 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----C--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc---hH-
Confidence            344444455555578898888888775432    2  234556667777777 799999999999887664432   22 


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC  154 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a  154 (233)
                       .+....+.+....|+|+.|..-..+.++.      .+..-.++.-...+|+..|++.+......+.
T Consensus       154 -~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L  213 (400)
T COG3071         154 -AVELTRARLLLNRRDYPAARENVDQLLEM------TPRHPEVLRLALRAYIRLGAWQALLAILPKL  213 (400)
T ss_pred             -HHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence             25667788899999999999988888764      3333456677788899999988877766543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.15  E-value=0.45  Score=42.72  Aligned_cols=124  Identities=17%  Similarity=0.195  Sum_probs=86.0

Q ss_pred             CHHHHHHHHHHHHHHHHHc----------CCc---------hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767           24 NWREVADFYRKASELYNEC----------GRS---------QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus        24 ~~~eA~~~~~~A~~l~~~~----------g~~---------~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ...||..+|++|++.-+..          |..         .-...+-.++|++.. .|+.++|++.++.-++.++..+.
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~  294 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN  294 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence            4689999999999875431          111         111334567788888 79999999999998887764332


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH---------------HHHH
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF---------------KQAE  148 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~---------------~~A~  148 (233)
                          -.+..++...++.+++|.++..++.+    +.++..+...+-+|...-+-..+-+|-               ..|.
T Consensus       295 ----l~IrenLie~LLelq~Yad~q~lL~k----YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~av  366 (539)
T PF04184_consen  295 ----LNIRENLIEALLELQAYADVQALLAK----YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAV  366 (539)
T ss_pred             ----hhHHHHHHHHHHhcCCHHHHHHHHHH----hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHH
Confidence                24788999999999999999887776    345555667777776644444444442               2355


Q ss_pred             HHHHHhh
Q 026767          149 KCYNDCS  155 (233)
Q Consensus       149 ~~~~~al  155 (233)
                      +.+.+|+
T Consensus       367 eAi~RAv  373 (539)
T PF04184_consen  367 EAIHRAV  373 (539)
T ss_pred             HHHHHHH
Confidence            6677776

The molecular function of this protein is uncertain.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.15  E-value=0.027  Score=48.17  Aligned_cols=97  Identities=13%  Similarity=-0.001  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +.-+..-|+-|..+|.|+||++||.+++.++-     . -...+.|-+..|. ...+..|..-+..|+.+-+.      -
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P-----~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y  164 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYP-----H-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL------Y  164 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhccCC-----C-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------H
Confidence            33456778999999999999999999998863     2 2345667777777 68888888888888877653      2


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ..+|.+-|.....+|...+|-+-|+.++++
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            356777777778888888888888888765

>PRK11906 transcriptional regulator; Provisional

Probab=96.14  E-value=0.33  Score=43.22  Aligned_cols=127  Identities=15%  Similarity=0.092  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKEL---------HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIML   78 (233)
Q Consensus         9 a~~~~~~g~~~~~~---------g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~   78 (233)
                      +.+|.-++.++...         .+..+|+++.++|+++    +..  -+.++..+|.++. .++++.|+.++++|+.+.
T Consensus       295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel----d~~--Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~  368 (458)
T PRK11906        295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI----TTV--DGKILAIMGLITGLSGQAKVSHILFEQAKIHS  368 (458)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence            55666666665432         1234556666666555    333  3567888899888 788999999999999998


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHH-HHHhhCCHHHHHHHHHH
Q 026767           79 EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAII-VYLYANDFKQAEKCYND  153 (233)
Q Consensus        79 ~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-~~~~~gd~~~A~~~~~~  153 (233)
                      +.      .+.++.-.|.++.-.|+.++|++..++++.+     ++...+.....+.. +|.. ...+.|++.|-+
T Consensus       369 Pn------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL-----sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  432 (458)
T PRK11906        369 TD------IASLYYYRALVHFHNEKIEEARICIDKSLQL-----EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK  432 (458)
T ss_pred             Cc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence            85      3568888999999999999999999999976     34444444455555 5554 457788777654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.078  Score=43.15  Aligned_cols=93  Identities=11%  Similarity=-0.048  Sum_probs=43.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 026767           17 ALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAAT   95 (233)
Q Consensus        17 ~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg   95 (233)
                      +-|..-.+|+.|+.+|.+|+.+-     | .-+.-+.|-+.+|. ..+++....-.++|+++..+      .+....-+|
T Consensus        18 nk~f~~k~y~~ai~~y~raI~~n-----P-~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h~flg   85 (284)
T KOG4642|consen   18 NKCFIPKRYDDAIDCYSRAICIN-----P-TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAHYFLG   85 (284)
T ss_pred             ccccchhhhchHHHHHHHHHhcC-----C-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHHHHHH
Confidence            33333444555555555554431     2 23334444445444 35555555555555554442      223444455


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           96 NVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        96 ~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      ........|++|+..++++..+.+..
T Consensus        86 ~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   86 QWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHhhccccHHHHHHHHHHHHHhcC
Confidence            55555555555555555555444443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.034  Score=45.15  Aligned_cols=95  Identities=16%  Similarity=0.069  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      +.-+..=|.-+. ...|+.|+.+|.+|+.+-+..      +..+.|-+.+|++..+++....-+.+++.+      .++.
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~   77 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV------ASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNL   77 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHH
Confidence            333444565666 688999999999999887742      346788899999999999999999999976      5667


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ++.++.+|.+.+....|+.|+..++++.
T Consensus        78 vk~h~flg~~~l~s~~~~eaI~~Lqra~  105 (284)
T KOG4642|consen   78 VKAHYFLGQWLLQSKGYDEAIKVLQRAY  105 (284)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            8899999999999999999999999995

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.11  E-value=0.011  Score=53.61  Aligned_cols=115  Identities=16%  Similarity=0.068  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Q 026767           32 YRKASELYNECGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAAT  109 (233)
Q Consensus        32 ~~~A~~l~~~~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~  109 (233)
                      .+-+..++...+.+.+-.++-.|.+.+|.  .|++..|+.++.+|+...+...+.     .+.+++.++++.|-...|-.
T Consensus       589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v-----~~v~la~~~~~~~~~~da~~  663 (886)
T KOG4507|consen  589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV-----PLVNLANLLIHYGLHLDATK  663 (886)
T ss_pred             HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc-----cHHHHHHHHHHhhhhccHHH
Confidence            34445555555555555555455555665  699999999999999887765543     56789999999999999999


Q ss_pred             HHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          110 FLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       110 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ++.+++.+.      ..+.-.++.+|.+++.+.+.+.|+++|.+++..
T Consensus       664 ~l~q~l~~~------~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  664 LLLQALAIN------SSEPLTFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             HHHHHHhhc------ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            999999874      334456789999999999999999999999844

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.06  E-value=0.91  Score=42.28  Aligned_cols=60  Identities=13%  Similarity=0.072  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ++...+.+.-.+++.++|+.++++++..|.      .--+.|+.+|.++-.+++.+.|++.|..-+
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~  712 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFP------DFHKLWLMLGQIEEQMENIEMAREAYLQGT  712 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCC------chHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence            344444444445555555555555554321      112344555555555555555555554443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.03  E-value=0.099  Score=34.92  Aligned_cols=70  Identities=14%  Similarity=0.173  Sum_probs=55.4

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT  124 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  124 (233)
                      ...-|.-+. ..+.++|+..++++++-.....+   ...++..+..+|...|+|.+.+++..+-++++++..++
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~---rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDRED---RFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            333444444 57788999999999988877543   34578889999999999999999999999998887654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.01  E-value=0.56  Score=40.02  Aligned_cols=128  Identities=15%  Similarity=0.083  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH-HHHhc-
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACI-MLEED-   81 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~-~~~~~-   81 (233)
                      +...+..+...+.+.+..|.++-|..++.++.......+..  ...+...-+.++. .|+..+|+..++..+. ..... 
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~  219 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI  219 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence            56778899999999999999999999988877765433332  2334445566666 7999999999988888 33322 


Q ss_pred             --------------------------CChHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767           82 --------------------------DKEQMAFDLYRAATNVYIKL------EKYADAATFLLRWGLAADKCNATNSQCK  129 (233)
Q Consensus        82 --------------------------g~~~~~~~~l~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~a~  129 (233)
                                                ......+.++..+|......      +.+++++..|++++.+...      ..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~k  293 (352)
T PF02259_consen  220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS------WEK  293 (352)
T ss_pred             ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh------HHH
Confidence                                      13455567888888888888      8899999999999876432      233


Q ss_pred             hHHHHHHHHHh
Q 026767          130 AYLSAIIVYLY  140 (233)
Q Consensus       130 ~~~~lg~~~~~  140 (233)
                      ++...|..+..
T Consensus       294 ~~~~~a~~~~~  304 (352)
T PF02259_consen  294 AWHSWALFNDK  304 (352)
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.89  E-value=0.019  Score=30.96  Aligned_cols=28  Identities=21%  Similarity=0.288  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ++.++|.++.+.|++++|+..|++.++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4667777777777777777777777654

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=95.87  E-value=0.46  Score=40.69  Aligned_cols=176  Identities=7%  Similarity=-0.009  Sum_probs=120.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHH
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD-KEQMAFDLY   91 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-~~~~~~~~l   91 (233)
                      .+..+|...++|.+|+.....-+.=.++..|...-..++.-=..+|. ..+..+|...+.-|-......= .+...+..=
T Consensus       133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD  212 (411)
T KOG1463|consen  133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD  212 (411)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence            34566777888999999888888888888887766666666677777 6778888777776665555443 233333333


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATK  171 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~  171 (233)
                      ..-|.+|+.-.+|..|..||-+|.+-|...++......++--+.+|-.-.+..++--..+.-=..+.  ..++.-.++..
T Consensus       213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y~g~~i~Amka  290 (411)
T KOG1463|consen  213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--YAGRDIDAMKA  290 (411)
T ss_pred             HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--ccCcchHHHHH
Confidence            4446677777899999999999999998888776666666555555555555554443332111111  22344567888


Q ss_pred             HHHHHhcCCHHHHHHHHhhc
Q 026767          172 LISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       172 L~~a~~~gd~~~a~~~~~~~  191 (233)
                      +++++.+.+...|..++.+|
T Consensus       291 vAeA~~nRSLkdF~~AL~~y  310 (411)
T KOG1463|consen  291 VAEAFGNRSLKDFEKALADY  310 (411)
T ss_pred             HHHHhcCCcHHHHHHHHHHh
Confidence            88888878888888887777

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.82  Score=38.98  Aligned_cols=115  Identities=11%  Similarity=-0.010  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      ....+++.+.+..|.+.||.+.|.+.+.+..+--...|..-..-.+..++|..|.  +.+---+..++|-.++++-||+.
T Consensus       101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~--D~~lV~~~iekak~liE~GgDWe  178 (393)
T KOG0687|consen  101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL--DHDLVTESIEKAKSLIEEGGDWE  178 (393)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhCCChh
Confidence            3467888899999999999999999999888877778887777777778887775  33334455677778888888665


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN  122 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  122 (233)
                      -....-.-.|.......++.+|..+|-.++..+....
T Consensus       179 RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~E  215 (393)
T KOG0687|consen  179 RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYE  215 (393)
T ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccccee
Confidence            5444444556667778899999999988877665543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=95.81  E-value=0.34  Score=40.25  Aligned_cols=114  Identities=8%  Similarity=-0.043  Sum_probs=69.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767           22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL  101 (233)
Q Consensus        22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~  101 (233)
                      ++++++|++.....+..+.+.|....++..-.-+-.+|.....+-..+...+-++++...+..                 
T Consensus         3 ~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~-----------------   65 (260)
T PF04190_consen    3 QKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE-----------------   65 (260)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-----------------
T ss_pred             cccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC-----------------
Confidence            678999999999999988888888777776666666666322211122223333333332211                 


Q ss_pred             ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767          102 EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC  154 (233)
Q Consensus       102 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a  154 (233)
                        -.+=..+..+++......+.+.+....+..+|.++...|++.+|+.+|-.+
T Consensus        66 --~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~  116 (260)
T PF04190_consen   66 --EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG  116 (260)
T ss_dssp             ---TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred             --cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence              112345556666666444566677778899999999999999999988654

; PDB: 3LKU_E 2WPV_G.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.80  E-value=0.025  Score=50.38  Aligned_cols=85  Identities=6%  Similarity=-0.085  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH-hc--C---------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           50 DALAKAARALE-DAVPEDAIQLYTDACIMLE-ED--D---------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~-~~--g---------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                      ..++|+|-|+. .|.|.-++.+|.+|+.-+. +.  |         ...-...++.|.|..|...|+.-.|.++|.++..
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            45689999999 7999999999999996222 11  1         0111236899999999999999999999999999


Q ss_pred             HHhHccCcchHHHhHHHHHHHHHh
Q 026767          117 AADKCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus       117 ~~~~~~~~~~~a~~~~~lg~~~~~  140 (233)
                      .|+..      .+.|+.++.|+..
T Consensus       364 vfh~n------PrlWLRlAEcCim  381 (696)
T KOG2471|consen  364 VFHRN------PRLWLRLAECCIM  381 (696)
T ss_pred             HHhcC------cHHHHHHHHHHHH
Confidence            88753      2467788888765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.21  Score=43.09  Aligned_cols=129  Identities=12%  Similarity=0.021  Sum_probs=80.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH----------HHHhcC
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACI----------MLEEDD   82 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~----------~~~~~g   82 (233)
                      -+|.++..+|+|++|+.-|+-+.+    ..+.  -+....+++-++. .|.|.+|...-.+|-+          +.-..+
T Consensus        62 Wia~C~fhLgdY~~Al~~Y~~~~~----~~~~--~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen   62 WIAHCYFHLGDYEEALNVYTFLMN----KDDA--PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhc----cCCC--CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence            366777788999999888876654    2333  3556778888877 7888888766554421          111222


Q ss_pred             ChHHHH----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHH
Q 026767           83 KEQMAF----------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCY  151 (233)
Q Consensus        83 ~~~~~~----------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~  151 (233)
                      +.....          +-..+++.++...--|.+|++.|.+.+.-       ..+-.++ ..+++||.++.-|+-+.+.+
T Consensus       136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-------n~ey~alNVy~ALCyyKlDYydvsqevl  208 (557)
T KOG3785|consen  136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-------NPEYIALNVYMALCYYKLDYYDVSQEVL  208 (557)
T ss_pred             cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-------ChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence            221111          22334555666666778888888877631       1122223 67889999998888888877


Q ss_pred             HHhh
Q 026767          152 NDCS  155 (233)
Q Consensus       152 ~~al  155 (233)
                      .-++
T Consensus       209 ~vYL  212 (557)
T KOG3785|consen  209 KVYL  212 (557)
T ss_pred             HHHH
Confidence            7766

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.61  E-value=0.83  Score=38.23  Aligned_cols=89  Identities=17%  Similarity=0.131  Sum_probs=69.4

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhH-c--cCc-----chHHH
Q 026767           61 DAVPEDAIQLYTDACIMLEEDD--KEQMAFDLYRAATNVYIKLE-KYADAATFLLRWGLAADK-C--NAT-----NSQCK  129 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g--~~~~~~~~l~~lg~~~~~~g-~~~~A~~~~~~al~~~~~-~--~~~-----~~~a~  129 (233)
                      +|+++.|..+|.|+-.+.....  .....+..+.++|.-....+ +|+.|+..++++.+++.. .  ...     .-...
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~   85 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS   85 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence            6999999999999998885222  33445678899999999999 999999999999999754 1  111     23567


Q ss_pred             hHHHHHHHHHhhCCHHHHHH
Q 026767          130 AYLSAIIVYLYANDFKQAEK  149 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~  149 (233)
                      ++..++.+|+..+.++...+
T Consensus        86 iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHH
Confidence            78999999999888765544

It is also involved in sporulation [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.17  Score=46.65  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=75.0

Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH
Q 026767           52 LAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY  131 (233)
Q Consensus        52 l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~  131 (233)
                      |+.++..+...+|..++++|..++..+........-+...+++..+|..+.+.|+|.+++++|-+.-      +...-+-
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------~~~~l~q  431 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------RQSPLCQ  431 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc------cccHHHH
Confidence            4455666667899999999999999988776333337899999999999999999999999987541      1122233


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          132 LSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       132 ~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      +.+..+....|...+|+.+.....
T Consensus       432 ~~~~~~~~~E~~Se~AL~~~~~~~  455 (872)
T KOG4814|consen  432 LLMLQSFLAEDKSEEALTCLQKIK  455 (872)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHH
Confidence            455566667789999999888765

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.51  E-value=0.035  Score=31.73  Aligned_cols=32  Identities=13%  Similarity=0.137  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      .++..+|++-+..++|++|+.-|++++++.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            46777888888888888888888888877654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.50  E-value=0.45  Score=43.91  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhC------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 026767           25 WREVADFYRKASELYNECGRSQPASDALAKAARALEDA------VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVY   98 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g------~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~   98 (233)
                      ..+|..+|+.+...        +-..+...+|.+|..|      |++.|+.+|+.|++-+...-... -..+...+|.+|
T Consensus       228 ~~~a~~~~~~~a~~--------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y  298 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLY  298 (552)
T ss_pred             hhHHHHHHHHHHhh--------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHH
Confidence            45677777777654        3445566788887753      88999999999988422211100 112567888888


Q ss_pred             HHhc-----cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC---CHHHHHHHHHHhh
Q 026767           99 IKLE-----KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN---DFKQAEKCYNDCS  155 (233)
Q Consensus        99 ~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---d~~~A~~~~~~al  155 (233)
                      .+..     ++..|+.+|.++...    +.+    .+.+.+|.++....   |+.+|.++|..|.
T Consensus       299 ~~g~~~~~~d~~~A~~~~~~aA~~----g~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa  355 (552)
T KOG1550|consen  299 LQGLGVEKIDYEKALKLYTKAAEL----GNP----DAQYLLGVLYETGTKERDYRRAFEYYSLAA  355 (552)
T ss_pred             hcCCCCccccHHHHHHHHHHHHhc----CCc----hHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence            8743     788899999988753    333    35577888887765   5789999998885

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.50  E-value=0.32  Score=48.09  Aligned_cols=184  Identities=12%  Similarity=0.052  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYN-ECGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD-   82 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~-~~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-   82 (233)
                      +.++.+...|......+.+.++.+ .-+++.++. ..|- ....+.+|.-++.++. .|++++|+.+-.+|+-+.+..- 
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence            345556666666666888999999 888888886 3333 4567889999999999 7999999999999998887653 


Q ss_pred             -ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH-cc-CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC
Q 026767           83 -KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK-CN-ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA  159 (233)
Q Consensus        83 -~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~-~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~  159 (233)
                       +...-...+.+++......+....|+..+.+++.+..= .+ +.+..+....+++.+++..++++.|.++.+.|.....
T Consensus      1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred             CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence             33333467888888888888999999999998875421 12 3455566678999999999999999999999984322


Q ss_pred             --CC--CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          160 --FL--RSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       160 --~~--~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                        +.  .-..+..-..+++.+ ..+|+..+..+.+..
T Consensus      1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred             hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence              21  123333444555566 466766666555544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.42  E-value=0.2  Score=38.98  Aligned_cols=68  Identities=10%  Similarity=0.113  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHhHc-cCcchHHHhHHHHHHHHHhhC----CHHHHHHHHHHhh
Q 026767           88 FDLYRAATNVYIKLEKY---ADAATFLLRWGLAADKC-NATNSQCKAYLSAIIVYLYAN----DFKQAEKCYNDCS  155 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~g----d~~~A~~~~~~al  155 (233)
                      ++.+++-|.++.++.++   .++.++++.|+.-+++. ...+....++.++|.+|...+    |..+|..+|++|.
T Consensus        25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~  100 (186)
T PF06552_consen   25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT  100 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            45777777777776554   34556666665544331 223445567888888887764    4445555555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.37  E-value=0.052  Score=48.41  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=68.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcC--ChHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHhHccCc-----------
Q 026767           61 DAVPEDAIQLYTDACIMLEEDD--KEQM--AFDLYRAATNVYIKLEKYADAATFLLRWGL-AADKCNAT-----------  124 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g--~~~~--~~~~l~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~-----------  124 (233)
                      .|++.+|.+.+..+ .+.+..|  ...+  .....+|+|.++.++|.|.-++.+|.+|+. .+.+...-           
T Consensus       253 ~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~  331 (696)
T KOG2471|consen  253 HGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ  331 (696)
T ss_pred             hcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence            68888877766543 3333333  1111  222348999999999999999999999994 44433211           


Q ss_pred             chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC
Q 026767          125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA  159 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~  159 (233)
                      ......+++.|+.|++.|++-.|.++|.+++..+.
T Consensus       332 nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  332 NKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             ccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            11234569999999999999999999999985543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.35  E-value=0.31  Score=40.48  Aligned_cols=101  Identities=11%  Similarity=0.061  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      ....+|.+-.+.||.+-|-.+|++.-..-...........++.+.+.+|. ..++..|...|.+.+..-.+.      ..
T Consensus       214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~------~~  287 (366)
T KOG2796|consen  214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN------AV  287 (366)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc------hh
Confidence            34567888888999999999999888777778888888999999999999 899999999998877554321      24


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      +.++-+.++..+|+...|++..+.++..
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6788999999999999999999988864

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.31  E-value=1.4  Score=36.69  Aligned_cols=95  Identities=14%  Similarity=0.002  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHHh
Q 026767           50 DALAKAARALEDAVPEDAIQLYTDACIMLEED---DKEQMAFDLYRAATNVYIKLE-------KYADAATFLLRWGLAAD  119 (233)
Q Consensus        50 ~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~---g~~~~~~~~l~~lg~~~~~~g-------~~~~A~~~~~~al~~~~  119 (233)
                      ....++|.+|..|+.  ...-+.+|+.+++..   |+... +.+...+|..|..-.       +...|+..|.++.... 
T Consensus       110 ~a~~~lg~~~~~G~g--v~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-  185 (292)
T COG0790         110 EALFNLGLMYANGRG--VPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-  185 (292)
T ss_pred             HHHHhHHHHHhcCCC--cccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence            344556666665442  223556666666543   22221 233556666655431       2225555555555432 


Q ss_pred             HccCcchHHHhHHHHHHHHHhh----CCHHHHHHHHHHhh
Q 026767          120 KCNATNSQCKAYLSAIIVYLYA----NDFKQAEKCYNDCS  155 (233)
Q Consensus       120 ~~~~~~~~a~~~~~lg~~~~~~----gd~~~A~~~~~~al  155 (233)
                             ...+.+.+|.+|..-    -|+.+|...|.++.
T Consensus       186 -------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa  218 (292)
T COG0790         186 -------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA  218 (292)
T ss_pred             -------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence                   234556667666442    26777777777765

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.07  E-value=1.1  Score=35.05  Aligned_cols=149  Identities=13%  Similarity=0.054  Sum_probs=92.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCchHH---------------HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767           19 AKELHNWREVADFYRKASELYNECGRSQPA---------------SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus        19 ~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~---------------a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      |++.++-..+.+.|..|+++....+.-...               ..+..++|.+.. .|+-..|+.+|..+..--.--.
T Consensus        49 yw~~s~as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~  128 (221)
T COG4649          49 YWQTSRASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ  128 (221)
T ss_pred             hhcccccccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc
Confidence            556667777777888888776654433221               223455566666 6999999998887653322111


Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCC--
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAF--  160 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~--  160 (233)
                      -.+.  .+..+.+.+++..|-|++-....+..   .-  ...+....+.-.||+.-.+.||+..|...|.+......-  
T Consensus       129 ~~rd--~ARlraa~lLvD~gsy~dV~srvepL---a~--d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr  201 (221)
T COG4649         129 IGRD--LARLRAAYLLVDNGSYDDVSSRVEPL---AG--DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR  201 (221)
T ss_pred             hhhH--HHHHHHHHHHhccccHHHHHHHhhhc---cC--CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence            1111  34556677888899998876644422   11  122333445678999999999999999999998754332  


Q ss_pred             CCchHHHHHHHHHH
Q 026767          161 LRSDQNRCATKLIS  174 (233)
Q Consensus       161 ~~~~e~~~l~~L~~  174 (233)
                      +-...+.++..|+.
T Consensus       202 nirqRAq~mldlI~  215 (221)
T COG4649         202 NIRQRAQIMLDLID  215 (221)
T ss_pred             HHHHHHHHHHHHHh
Confidence            22344555555543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.04  E-value=0.49  Score=43.71  Aligned_cols=131  Identities=14%  Similarity=0.137  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhC------CHHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKE-----LHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDA------VPEDAIQLYTDACIM   77 (233)
Q Consensus         9 a~~~~~~g~~~~~-----~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g------~~~~A~~~~~~Al~~   77 (233)
                      ..+...+|.+|..     ..|++.|+.++..|+.-+.+.-.. +-..+...+|.+|..|      ++..|+.+|.+|.+.
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            3455566666653     357999999999998853221111 1223577889998853      567788888887654


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh----CCHHHHHHH
Q 026767           78 LEEDDKEQMAFDLYRAATNVYIKLE---KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA----NDFKQAEKC  150 (233)
Q Consensus        78 ~~~~g~~~~~~~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----gd~~~A~~~  150 (233)
                          |.+    .+...+|.++..-.   ++.+|..+|..|..        .+...+...++.||..-    -+...|..+
T Consensus       323 ----g~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--------~G~~~A~~~la~~y~~G~gv~r~~~~A~~~  386 (552)
T KOG1550|consen  323 ----GNP----DAQYLLGVLYETGTKERDYRRAFEYYSLAAK--------AGHILAIYRLALCYELGLGVERNLELAFAY  386 (552)
T ss_pred             ----CCc----hHHHHHHHHHHcCCccccHHHHHHHHHHHHH--------cCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence                222    46677888877544   67899999999884        34445677888887653    378899999


Q ss_pred             HHHhhc
Q 026767          151 YNDCSQ  156 (233)
Q Consensus       151 ~~~al~  156 (233)
                      +.++..
T Consensus       387 ~k~aA~  392 (552)
T KOG1550|consen  387 YKKAAE  392 (552)
T ss_pred             HHHHHH
Confidence            988863

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.04  E-value=2.2  Score=37.45  Aligned_cols=177  Identities=12%  Similarity=0.096  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHH
Q 026767           28 VADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYAD  106 (233)
Q Consensus        28 A~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~  106 (233)
                      -.+-.+.=+..|+..+-....-.++..+|.-|. -|+.+.|++.|.|+-++....+.   ......++-.|-+..|+|..
T Consensus       129 ~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~h  205 (466)
T KOG0686|consen  129 KLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGH  205 (466)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhh
Confidence            344455556667766666777788999999999 79999999999998888876653   34566677788888999988


Q ss_pred             HHHHHHHHHHHHhH--ccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCC--CCchHHHHHHHHHHHHhcCCH
Q 026767          107 AATFLLRWGLAADK--CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAF--LRSDQNRCATKLISAYTEGDV  181 (233)
Q Consensus       107 A~~~~~~al~~~~~--~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~--~~~~e~~~l~~L~~a~~~gd~  181 (233)
                      -..+-.+|......  .-.+...++..-..|++++.+++|..|.++|-.+. ....+  .-+...........|++.-|.
T Consensus       206 v~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr  285 (466)
T KOG0686|consen  206 VLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDR  285 (466)
T ss_pred             hhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCH
Confidence            88888777654200  00111123344566778888889999999998875 22222  123344455555556655555


Q ss_pred             HHHHHHHhhc----ccccchHHHHHHhccC
Q 026767          182 EEIKRVAQSS----AISNLDHVIIKLARKL  207 (233)
Q Consensus       182 ~~a~~~~~~~----~~~~ld~~~~~l~~~l  207 (233)
                      ......+-..    .|-.+++....|..+.
T Consensus       286 ~~Lk~~vi~n~~Fk~flel~Pqlr~il~~f  315 (466)
T KOG0686|consen  286 QDLKLNVIKNESFKLFLELEPQLREILFKF  315 (466)
T ss_pred             HHHHHHHHcchhhhhHHhcChHHHHHHHHH
Confidence            5554332222    5555666655554443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.01  E-value=0.31  Score=39.33  Aligned_cols=94  Identities=9%  Similarity=-0.066  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +..-|..+..-|+.|-..|-++-|.--|.+++.+.      ...+.+++-+|..+. .|+++.|.+.|..-+++-+.-+ 
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-  133 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-  133 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-
Confidence            34567777888888888888888888888888885      356778899999888 7999999999888887755432 


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHH
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATF  110 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~  110 (233)
                           .+..|-|..+.--|+|.-|.+-
T Consensus       134 -----Ya~lNRgi~~YY~gR~~LAq~d  155 (297)
T COG4785         134 -----YAHLNRGIALYYGGRYKLAQDD  155 (297)
T ss_pred             -----HHHhccceeeeecCchHhhHHH
Confidence                 2333334444444555544443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.01  E-value=0.071  Score=31.22  Aligned_cols=29  Identities=24%  Similarity=0.234  Sum_probs=14.3

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      +..+|.+|. .|++++|++.|+++++..++
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            344455555 45555555555555555443

>KOG3024 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.98  E-value=1.8  Score=36.14  Aligned_cols=194  Identities=10%  Similarity=0.043  Sum_probs=132.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh--------------------
Q 026767            2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED--------------------   61 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~--------------------   61 (233)
                      +|+++.+-.+|..+.+-|-.++.++.|++..-..+..+-+.+....++....-+..+++.                    
T Consensus        19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~anl~~ll~e~   98 (312)
T KOG3024|consen   19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVANLAELLGEA   98 (312)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhc
Confidence            468899999999999999999999999998877777777777666666655555444432                    


Q ss_pred             -CCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH----------HHHHhHccCcchHHH
Q 026767           62 -AVPEDAIQLYTDACIMLEEDD-KEQMAFDLYRAATNVYIKLEKYADAATFLLRW----------GLAADKCNATNSQCK  129 (233)
Q Consensus        62 -g~~~~A~~~~~~Al~~~~~~g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~a----------l~~~~~~~~~~~~a~  129 (233)
                       ..-.+=..+.++++++-.+.+ -+.+-...+.-+|..+..-+++.+|..+|-.+          ++.....+.....-.
T Consensus        99 ~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~s~~a~~ll~y~~~r~f~~e~d~  178 (312)
T KOG3024|consen   99 DPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSEDGSKFAYMLLEYSMSRGFKSEPDV  178 (312)
T ss_pred             CCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcCChHHHHHHHHHHHhhcccccCchH
Confidence             122234467788888888742 22233357788999999999999999888653          111111122221223


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhhcC-------------------CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCSQV-------------------DAFLRSDQNRCATKLISAYTEGDVEEIKRVAQS  190 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~-------------------~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~  190 (233)
                      .+.....=|+-..+...|...+..+...                   +-+.....-.++.-|...+..+|...+......
T Consensus       179 f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~e~~~~~~~k~~~~~~~pllNFl~~Ll~t~~~k~~~~f~~L~~~  258 (312)
T KOG3024|consen  179 FYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMDEIKHKAGTKNPFPFEYPLLNFLHFLLETIQRKDLPLFLMLRVK  258 (312)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccchhhcccccccCCCccccchHHHHHHHHHHHhccccHHHHHHHHH
Confidence            3456666677788999999988887751                   111223455678888888889999999999998


Q ss_pred             c--cccc
Q 026767          191 S--AISN  195 (233)
Q Consensus       191 ~--~~~~  195 (233)
                      |  .+++
T Consensus       259 Y~~slkr  265 (312)
T KOG3024|consen  259 YQPSLKR  265 (312)
T ss_pred             ccchhhh
Confidence            8  4444

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.86  E-value=2.1  Score=36.13  Aligned_cols=188  Identities=11%  Similarity=0.091  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      .+..+++.+|-..|++..-.+.....-+.+...-.+ ..+.+...+-..+.  ...++.-+......+++.....+....
T Consensus        46 ~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr  124 (421)
T COG5159          46 ATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLR  124 (421)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777787776666666666665554444 34555555555555  367889999999999999888766555


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh--cCCCCCCchH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS--QVDAFLRSDQ  165 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al--~~~~~~~~~e  165 (233)
                      -..-..+..++.+.|.|.+|+....-.+.-+.+..+......++.--..+|....+..++...+.-|.  ....++++.-
T Consensus       125 ~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql  204 (421)
T COG5159         125 LELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL  204 (421)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH
Confidence            55667889999999999999999888887777777777766667777777777777777777776654  3333454333


Q ss_pred             HHHHHHHHH-HH-hcCCHHHHHHHHhhc--ccccchH
Q 026767          166 NRCATKLIS-AY-TEGDVEEIKRVAQSS--AISNLDH  198 (233)
Q Consensus       166 ~~~l~~L~~-a~-~~gd~~~a~~~~~~~--~~~~ld~  198 (233)
                      ..-+.-+-- .+ +..|+..|-.++-++  -|..++.
T Consensus       205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~  241 (421)
T COG5159         205 QAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKM  241 (421)
T ss_pred             HHHHHHhccceeeccccchhHHHHHHHHHhccccccc
Confidence            222222221 22 567777777766655  4554443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.83  E-value=0.042  Score=29.56  Aligned_cols=28  Identities=18%  Similarity=0.126  Sum_probs=14.2

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLE   79 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~   79 (233)
                      +.++|.++. .|++++|+..|++.++-|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            444555555 4555555555555554443

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.82  E-value=2.7  Score=37.33  Aligned_cols=107  Identities=18%  Similarity=0.137  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC-------HHHHHHHHHHHHHHHHhc-
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV-------PEDAIQLYTDACIMLEED-   81 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~-------~~~A~~~~~~Al~~~~~~-   81 (233)
                      -+..+|..+..++||+-|...|+-+..=|..-.-..-.|-++.=+|..+. .+.       .+....+++.|+..|... 
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            35678888888999999999999999988765556666666766666655 332       247778888899888883 


Q ss_pred             ----CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           82 ----DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        82 ----g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                          .....+..+..-.+.++...|.|.+|...+-+....
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence                233456678888888888899998888877777654

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>smart00028 TPR Tetratricopeptide repeats

Probab=94.69  E-value=0.07  Score=27.41  Aligned_cols=28  Identities=21%  Similarity=0.241  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ++.++|.++...+++++|+..|++++.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4566777777777777777777776643

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=0.53  Score=40.69  Aligned_cols=87  Identities=14%  Similarity=0.098  Sum_probs=64.3

Q ss_pred             HhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767           58 ALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV  137 (233)
Q Consensus        58 ~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~  137 (233)
                      .+...||..|+..++-....-++..     ..+-.-+|.++..+|+|.+|+..|+-+..    ..+.  .+....+++.|
T Consensus        32 fls~rDytGAislLefk~~~~~EEE-----~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~--~~el~vnLAcc  100 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEE-----DSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDA--PAELGVNLACC  100 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhh-----HHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCC--CcccchhHHHH
Confidence            3445788888888877775544433     23556789999999999999999986653    1222  24456899999


Q ss_pred             HHhhCCHHHHHHHHHHhh
Q 026767          138 YLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       138 ~~~~gd~~~A~~~~~~al  155 (233)
                      ++.+|.|.+|...-+++-
T Consensus       101 ~FyLg~Y~eA~~~~~ka~  118 (557)
T KOG3785|consen  101 KFYLGQYIEAKSIAEKAP  118 (557)
T ss_pred             HHHHHHHHHHHHHHhhCC
Confidence            999999999998888774

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.50  E-value=2.5  Score=35.56  Aligned_cols=115  Identities=12%  Similarity=0.032  Sum_probs=74.2

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH---------------HHHHHhHc----
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLR---------------WGLAADKC----  121 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~---------------al~~~~~~----  121 (233)
                      .|++.+|...+..++...++.+      .+...++++|+..|+.+.|...+..               -+++....    
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~------~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENS------EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccc------hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            4777777777777777666542      3455566667777766666555533               12222211    


Q ss_pred             ---------cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHHhcCCH
Q 026767          122 ---------NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAYTEGDV  181 (233)
Q Consensus       122 ---------~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~~~gd~  181 (233)
                               ...+......+.++..+...|+++.|.+.+-..+ ...++.+..-.+-+..+.+++..+|+
T Consensus       221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence                     1222334456889999999999999999888776 55566666666667777777767776

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.44  E-value=0.79  Score=37.71  Aligned_cols=107  Identities=12%  Similarity=0.050  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCch------HHHHHHHHHHHHhh-hCCHHHHHHHH
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNEC------GRSQ------PASDALAKAARALE-DAVPEDAIQLY   71 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~------g~~~------~~a~~l~~lg~~~~-~g~~~~A~~~~   71 (233)
                      +..+..++.+=|+-+...|+|.||...|..|+...+.+      |++.      ...-.+.|...++. .|+|-+++++.
T Consensus       174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~  253 (329)
T KOG0545|consen  174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC  253 (329)
T ss_pred             hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence            34566778888988878999999999999999987643      4432      12235677788888 69999999998


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           72 TDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        72 ~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ...+...+.      -..++..-|..+...=+.++|..-|.+++++
T Consensus       254 seiL~~~~~------nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  254 SEILRHHPG------NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             HHHHhcCCc------hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            888776653      2367888888888888999999999999875

>smart00028 TPR Tetratricopeptide repeats

Probab=94.34  E-value=0.07  Score=27.40  Aligned_cols=27  Identities=22%  Similarity=0.361  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASE   37 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~   37 (233)
                      ++.++|.++...+++++|+.+|++++.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            455556666666666666666665554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.34  E-value=2  Score=39.96  Aligned_cols=142  Identities=10%  Similarity=0.027  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------cCCchHHHHHHHHH------HHHhh-hCCHHHHHHHHHHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNE------CGRSQPASDALAKA------ARALE-DAVPEDAIQLYTDA   74 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~------~g~~~~~a~~l~~l------g~~~~-~g~~~~A~~~~~~A   74 (233)
                      .+..|.+-|.+-.+..+++.|+.+.++|..+=..      -|...-++++++.+      +..-+ .|-++.-...|.+.
T Consensus       424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri  503 (835)
T KOG2047|consen  424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI  503 (835)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3555555555555555666666666665532110      12222334333322      22222 24444444555555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767           75 CIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC  154 (233)
Q Consensus        75 l~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a  154 (233)
                      +++--...      .+..|.|.++.+..-+.+|.+.|++.+.++. -......-..|+.-..-....-..+.|+..|++|
T Consensus       504 idLriaTP------qii~NyAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa  576 (835)
T KOG2047|consen  504 IDLRIATP------QIIINYAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA  576 (835)
T ss_pred             HHHhcCCH------HHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            54443321      4677899999999999999999999998874 2233344455555555555555799999999999


Q ss_pred             hc
Q 026767          155 SQ  156 (233)
Q Consensus       155 l~  156 (233)
                      +.
T Consensus       577 L~  578 (835)
T KOG2047|consen  577 LD  578 (835)
T ss_pred             Hh
Confidence            94

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.02  E-value=0.085  Score=27.21  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=13.0

Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHH
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYN  152 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~  152 (233)
                      ++..+|.++..+||+++|+..++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34555666666666666655544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.98  E-value=0.17  Score=28.92  Aligned_cols=29  Identities=21%  Similarity=0.087  Sum_probs=14.0

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLE   79 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~   79 (233)
                      ++..+|.+-. .++|++|+.-|++|+++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4444444444 4455555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=93.79  E-value=1.9  Score=40.54  Aligned_cols=33  Identities=15%  Similarity=0.356  Sum_probs=26.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWG  115 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al  115 (233)
                      +..+.-.+.+++|..+..+..+.+|.++|.+..
T Consensus       791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~  823 (1189)
T KOG2041|consen  791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG  823 (1189)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344455788999999999999999999998764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.78  E-value=0.022  Score=48.46  Aligned_cols=90  Identities=21%  Similarity=0.126  Sum_probs=70.6

Q ss_pred             HHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHH
Q 026767           55 AARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSA  134 (233)
Q Consensus        55 lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l  134 (233)
                      ....+..|.++.|+++|.+|+++-..      .+..+.+-+.+++++++...|+.-|..++++      ....+.-|-.-
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~ykfr  188 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGYKFR  188 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhcc------Ccccccccchh
Confidence            34445578899999999999887663      4567788889999999999999999988865      33445556667


Q ss_pred             HHHHHhhCCHHHHHHHHHHhhc
Q 026767          135 IIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus       135 g~~~~~~gd~~~A~~~~~~al~  156 (233)
                      |..+..+|++++|.+.++.++.
T Consensus       189 g~A~rllg~~e~aa~dl~~a~k  210 (377)
T KOG1308|consen  189 GYAERLLGNWEEAAHDLALACK  210 (377)
T ss_pred             hHHHHHhhchHHHHHHHHHHHh
Confidence            7888888999999999988873

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=93.69  E-value=0.2  Score=40.36  Aligned_cols=99  Identities=10%  Similarity=-0.006  Sum_probs=80.6

Q ss_pred             chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767           45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      ....|..+..-|..|. .|=..-|.--|.+++.+.+..      ..+++-+|..+...|+|+.|.+.|.-.+++      
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------  128 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------  128 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhcc------
Confidence            4566777778888888 688888888899999988864      368999999999999999999999988875      


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      .++--.+..|-|+....-|+|.-|.+-+.+..
T Consensus       129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY  160 (297)
T COG4785         129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY  160 (297)
T ss_pred             CCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence            23333466888888888899999988887765

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.68  E-value=0.96  Score=32.36  Aligned_cols=93  Identities=13%  Similarity=0.019  Sum_probs=54.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHhhhCCHH-------HHHHHHHHHHHHHHhcCCh
Q 026767           16 AALAKELHNWREVADFYRKASELYNECGRS----QPASDALAKAARALEDAVPE-------DAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus        16 g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~----~~~a~~l~~lg~~~~~g~~~-------~A~~~~~~Al~~~~~~g~~   84 (233)
                      +.-+...|++-+|++..+..+-......+.    ..++.++..+|...+  +++       .|++.|.++..+.+.    
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~te--n~d~k~~yLl~sve~~s~a~~Lsp~----   76 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTE--NPDVKFRYLLGSVECFSRAVELSPD----   76 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhcc--CchHHHHHHHHhHHHHHHHhccChh----
Confidence            445667899999999999988776554442    233334444444333  444       445555555554443    


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                        .+..+..+|.-+-...-|.+++.-.++++.
T Consensus        77 --~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   77 --SAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             --HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence              255666666665555556666666665553

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=93.62  E-value=2.4  Score=42.90  Aligned_cols=146  Identities=14%  Similarity=0.044  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc----------------------
Q 026767           46 QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE----------------------  102 (233)
Q Consensus        46 ~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g----------------------  102 (233)
                      ...++....+|.++. .|++..|+++|..|+++.+..+|..+.+.++..++.+.+-.+                      
T Consensus       239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~  318 (1185)
T PF08626_consen  239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST  318 (1185)
T ss_pred             hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence            356778888899999 699999999999999999999999999999988876543111                      


Q ss_pred             -----------------------------------------cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh
Q 026767          103 -----------------------------------------KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA  141 (233)
Q Consensus       103 -----------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~  141 (233)
                                                               .+++|+.+|.++.....+--.......+...++..+...
T Consensus       319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~  398 (1185)
T PF08626_consen  319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ  398 (1185)
T ss_pred             CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence                                                     334455555554432222122233344455566665555


Q ss_pred             C--------------------CHHHHHHHHHHhhcC--CCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          142 N--------------------DFKQAEKCYNDCSQV--DAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       142 g--------------------d~~~A~~~~~~al~~--~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .                    .-.++.....+++..  ........+.++..|+..| .-|=..+..-.++..
T Consensus       399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l  471 (1185)
T PF08626_consen  399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLREL  471 (1185)
T ss_pred             hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            5                    566777777777632  2234567788999999999 678777777777777

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.35  E-value=4.1  Score=35.67  Aligned_cols=134  Identities=11%  Similarity=0.047  Sum_probs=75.6

Q ss_pred             HHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---------CCHHHHHHHHHHHHHHH
Q 026767           12 MESAAALAKE---LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D---------AVPEDAIQLYTDACIML   78 (233)
Q Consensus        12 ~~~~g~~~~~---~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---------g~~~~A~~~~~~Al~~~   78 (233)
                      -...|.++.+   .|+.++|++.+..++.--   +  ......+.-+|.+|. .         ...++|+.+|.++-++-
T Consensus       182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~---~--~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  182 KFQYAFALNRRNKPGDREKALQILLPVLESD---E--NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---C--CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            4466777776   889999998888873321   1  123345555666655 2         24688888888887766


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HH---HhHccCcch--HHHhHHHHHHHHHhhCCHHHHHHHHH
Q 026767           79 EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWG-LA---ADKCNATNS--QCKAYLSAIIVYLYANDFKQAEKCYN  152 (233)
Q Consensus        79 ~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al-~~---~~~~~~~~~--~a~~~~~lg~~~~~~gd~~~A~~~~~  152 (233)
                      +.   .    ..=.|++.++.-.|.-.+...-.++.. .+   .-+.+....  ..-.+-.+..+..-.||+++|.+.++
T Consensus       257 ~~---~----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e  329 (374)
T PF13281_consen  257 PD---Y----YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE  329 (374)
T ss_pred             cc---c----cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            32   1    122355555555554333333333322 11   111121111  11223456666777889999999988


Q ss_pred             HhhcC
Q 026767          153 DCSQV  157 (233)
Q Consensus       153 ~al~~  157 (233)
                      ++...
T Consensus       330 ~~~~l  334 (374)
T PF13281_consen  330 KAFKL  334 (374)
T ss_pred             HHhhc
Confidence            88744

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.31  E-value=0.78  Score=40.44  Aligned_cols=141  Identities=9%  Similarity=-0.083  Sum_probs=75.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026767           15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRA   93 (233)
Q Consensus        15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~   93 (233)
                      -+.++.....+..|.....+..--...-......+.++-.++.++.. +..-.+..+.-+++....+-......+.+-.+
T Consensus       279 ~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~  358 (482)
T KOG4322|consen  279 FAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLD  358 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHH
Confidence            33333333344444444444433333333344455555556666663 44455666666666665555555555556666


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh------hCCHHHHHHHHHHhh
Q 026767           94 ATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY------ANDFKQAEKCYNDCS  155 (233)
Q Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~------~gd~~~A~~~~~~al  155 (233)
                      ++..+.-+|-..+|...+..++....-.|.....+++++..+.|+++      ..+.+.+.++++++.
T Consensus       359 LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~  426 (482)
T KOG4322|consen  359 LALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQ  426 (482)
T ss_pred             HHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHH
Confidence            77777777777777777777776665555444444444333333332      334555555555554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.26  E-value=6.1  Score=35.69  Aligned_cols=154  Identities=12%  Similarity=0.106  Sum_probs=110.0

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI   99 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~   99 (233)
                      ...|.+.+.+.|+.++++.-.  ....-|.++.-.|..-. +-+...|.+.+-.|+-..+..       .++...-.+-.
T Consensus       378 e~ed~ertr~vyq~~l~lIPH--kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-------KlFk~YIelEl  448 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPH--KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-------KLFKGYIELEL  448 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCc--ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-------hHHHHHHHHHH
Confidence            467888899999999997532  22345666665566555 678888988888888766642       46777778888


Q ss_pred             HhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH-Hhc
Q 026767          100 KLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISA-YTE  178 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a-~~~  178 (233)
                      ++++++....+|++-++.      .+....++...+..-..+||.++|+..|+-|++-+..... | -+...-++- .+.
T Consensus       449 qL~efDRcRkLYEkfle~------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp-e-llwkaYIdFEi~~  520 (677)
T KOG1915|consen  449 QLREFDRCRKLYEKFLEF------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP-E-LLWKAYIDFEIEE  520 (677)
T ss_pred             HHhhHHHHHHHHHHHHhc------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH-H-HHHHHhhhhhhhc
Confidence            899999999999998864      4455667788889999999999999999999876653221 1 112222221 156


Q ss_pred             CCHHHHHHHHhhc
Q 026767          179 GDVEEIKRVAQSS  191 (233)
Q Consensus       179 gd~~~a~~~~~~~  191 (233)
                      |.++.++...++.
T Consensus       521 ~E~ekaR~LYerl  533 (677)
T KOG1915|consen  521 GEFEKARALYERL  533 (677)
T ss_pred             chHHHHHHHHHHH
Confidence            8888888777776

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=93.10  E-value=5.2  Score=34.41  Aligned_cols=170  Identities=14%  Similarity=0.159  Sum_probs=109.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHH
Q 026767           18 LAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-AFDLYRAAT   95 (233)
Q Consensus        18 ~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-~~~~l~~lg   95 (233)
                      +..+.+|.++|+++.++-.+-......+.....+...+|.++. .||..++.+.....-.+....+.-.. .-..++.++
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls  163 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS  163 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence            4456779999999999999999999999889999999999988 79999999988888877776653222 333455555


Q ss_pred             HHHH-HhccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHHHHhhcCCCCC--CchHHHHHHH
Q 026767           96 NVYI-KLEKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCYNDCSQVDAFL--RSDQNRCATK  171 (233)
Q Consensus        96 ~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al~~~~~~--~~~e~~~l~~  171 (233)
                      .-|. ..|++.....+.-+-+.+..-...+..+-..+ +.++..-+ +|+   -.-.|-+.+..|.+.  ..-+.+.|..
T Consensus       164 sqYyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aAL-LGe---~iyNfGELL~HPilesL~gT~~eWL~d  239 (380)
T KOG2908|consen  164 SQYYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAAL-LGE---NIYNFGELLAHPILESLKGTNREWLKD  239 (380)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHH-hcc---ccccHHHHHhhHHHHHhcCCcHHHHHH
Confidence            5444 56777765555444443332111222221111 33333322 232   112333444444331  1244578889


Q ss_pred             HHHHHhcCCHHHHHHHHhhc
Q 026767          172 LISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       172 L~~a~~~gd~~~a~~~~~~~  191 (233)
                      +..|+..||...+.+.....
T Consensus       240 ll~Afn~Gdl~~f~~l~~~~  259 (380)
T KOG2908|consen  240 LLIAFNSGDLKRFESLKGVW  259 (380)
T ss_pred             HHHHhccCCHHHHHHHHHHh
Confidence            99999999999999887765

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=92.92  E-value=4.9  Score=33.64  Aligned_cols=127  Identities=15%  Similarity=0.132  Sum_probs=77.4

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK-LEKYADAATFLLRWGLAADKCNATNSQC  128 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~a  128 (233)
                      +|........ .+..+.|...|.+|+    ..+....  .++...|.+-.. .++...|...|++++..+....+     
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~----~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~-----   71 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRAR----KDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD-----   71 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH-----
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH-----
Confidence            3444444444 355888999999996    2333222  467788888555 67777799999999987644322     


Q ss_pred             HhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch-HHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          129 KAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD-QNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       129 ~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~-e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                       .+..-...+...||...|+..|++++....  ... -..+....++-= .-||.+......+++
T Consensus        72 -~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~--~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~  133 (280)
T PF05843_consen   72 -FWLEYLDFLIKLNDINNARALFERAISSLP--KEKQSKKIWKKFIEFESKYGDLESVRKVEKRA  133 (280)
T ss_dssp             -HHHHHHHHHHHTT-HHHHHHHHHHHCCTSS--CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCcHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             233334555678999999999999984311  111 122444444422 468887777776666

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.79  E-value=0.18  Score=25.90  Aligned_cols=23  Identities=13%  Similarity=0.043  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLL  112 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~  112 (233)
                      +...+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45677778888888888877665

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.68  E-value=6.8  Score=34.62  Aligned_cols=147  Identities=9%  Similarity=-0.006  Sum_probs=102.9

Q ss_pred             HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767            9 AKHMESAAAL--AKELHNWREVADFYRKASELYNECGRS----QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         9 a~~~~~~g~~--~~~~g~~~eA~~~~~~A~~l~~~~g~~----~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      ..+|..+-..  .+.++++.+|..+-+.-+.-. ..++.    .-+|.+|.-+..+|+ .|+...-...+..-+....-.
T Consensus       124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr  202 (493)
T KOG2581|consen  124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR  202 (493)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence            3444444333  234678888888776655542 23332    236778888888999 688776666666666665555


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCC
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVD  158 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~  158 (233)
                      .+..+.+...+-+-+.|+..+.|++|-..-.++.-  -+.......++-++-+|.+..-++||..|.++|-+|+ ..|
T Consensus       203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap  278 (493)
T KOG2581|consen  203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP  278 (493)
T ss_pred             CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence            56666677888889999999999999887766541  1222233667778999999999999999999999998 344

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.62  E-value=0.96  Score=27.83  Aligned_cols=28  Identities=14%  Similarity=-0.084  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      |+..++..+.++|+|.+|..+.+..+.+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            5666677777777777777777776654

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=92.42  E-value=6.4  Score=33.75  Aligned_cols=127  Identities=10%  Similarity=0.016  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH
Q 026767           26 REVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKY  104 (233)
Q Consensus        26 ~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~  104 (233)
                      ++=+.-++++++=..++---.....++.+.|..|- -||-+.|.+++.+..+-....|......-+...+|.+|....=.
T Consensus        81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV  160 (393)
T KOG0687|consen   81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLV  160 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHH
Confidence            34455556666555555334567888999999999 59999999999999999999998888778888999988755444


Q ss_pred             HHHHHHHHHHHHHHhHccC--cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          105 ADAATFLLRWGLAADKCNA--TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       105 ~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      .+-   .+++-.+.++-|+  +++.-++  --|+-+...-++.+|-..|-.++..
T Consensus       161 ~~~---iekak~liE~GgDWeRrNRlKv--Y~Gly~msvR~Fk~Aa~Lfld~vsT  210 (393)
T KOG0687|consen  161 TES---IEKAKSLIEEGGDWERRNRLKV--YQGLYCMSVRNFKEAADLFLDSVST  210 (393)
T ss_pred             HHH---HHHHHHHHHhCCChhhhhhHHH--HHHHHHHHHHhHHHHHHHHHHHccc
Confidence            443   3455555555543  2333344  3455556667999999999988643

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.33  E-value=0.24  Score=29.25  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=12.3

Q ss_pred             HHHHHHHhhCCHHHHHHHHHHhh
Q 026767          133 SAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       133 ~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      .++.+|..+||++.|++.+++.+
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHH
Confidence            44555555555555555555554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.15  E-value=0.55  Score=37.28  Aligned_cols=57  Identities=25%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHH
Q 026767           49 SDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADA  107 (233)
Q Consensus        49 a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A  107 (233)
                      +.....+|..|...++++++..|.+++++.....+...  .++..|+.++.++|+++.|
T Consensus       141 ~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~--eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  141 AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNP--EILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHHhcchhhh
Confidence            44455555555566666666666666666665543322  4566666666666666655

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=91.97  E-value=4.4  Score=31.71  Aligned_cols=67  Identities=24%  Similarity=0.213  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhh-h---CC-------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc----cHHHHHHHHHH
Q 026767           49 SDALAKAARALE-D---AV-------PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE----KYADAATFLLR  113 (233)
Q Consensus        49 a~~l~~lg~~~~-~---g~-------~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g----~~~~A~~~~~~  113 (233)
                      +..|++-|.++. .   ..       +++|+.-|++|+.+-+..      ..++.++|.+|..++    +..+|-++|++
T Consensus        25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k   98 (186)
T PF06552_consen   25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK------HDALWCLGNAYTSLAFLTPDTAEAEEYFEK   98 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence            667777777665 3   33       344555555555554432      257788888887665    44566677777


Q ss_pred             HHHHHhHc
Q 026767          114 WGLAADKC  121 (233)
Q Consensus       114 al~~~~~~  121 (233)
                      |...+.+.
T Consensus        99 A~~~FqkA  106 (186)
T PF06552_consen   99 ATEYFQKA  106 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76666543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.86  E-value=2.5  Score=39.47  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRK   34 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~   34 (233)
                      -+..++.++++.|.-..|+++|..
T Consensus       647 KF~EAAklFk~~G~enRAlEmyTD  670 (1081)
T KOG1538|consen  647 KFHEAAKLFKRSGHENRALEMYTD  670 (1081)
T ss_pred             hHHHHHHHHHHcCchhhHHHHHHH
Confidence            355666666666666666666544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.78  E-value=0.2  Score=45.78  Aligned_cols=94  Identities=16%  Similarity=0.080  Sum_probs=75.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY   91 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l   91 (233)
                      +.+|...+-.|+...|+.|...|+.+-     +...-..+.+++.++. -|-.-.|-.++.+++.+.-...      ..+
T Consensus       611 n~aglywr~~gn~~~a~~cl~~a~~~~-----p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep------l~~  679 (886)
T KOG4507|consen  611 NEAGLYWRAVGNSTFAIACLQRALNLA-----PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP------LTF  679 (886)
T ss_pred             ecccceeeecCCcHHHHHHHHHHhccC-----hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc------hHH
Confidence            334444556899999999999998765     4455556888998888 6888889999999999883222      367


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ..+|..++.+.+.++|++.|++|+.+
T Consensus       680 ~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  680 LSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             HhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            78999999999999999999999975

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.45  E-value=8.3  Score=36.20  Aligned_cols=73  Identities=12%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHH-----hh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHH
Q 026767           32 YRKASELYNECGRSQPASDALAKAARA-----LE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYA  105 (233)
Q Consensus        32 ~~~A~~l~~~~g~~~~~a~~l~~lg~~-----~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~  105 (233)
                      |.+|..+|.+.|....+-..+..+-+.     +. .|..++--...++=.++.+....++-+++       +++..|+.+
T Consensus       648 F~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAE-------mLiSaGe~~  720 (1081)
T KOG1538|consen  648 FHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAE-------MLISAGEHV  720 (1081)
T ss_pred             HHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHH-------Hhhcccchh
Confidence            677788888888888777777766443     33 47777777777777788887777766554       344455555


Q ss_pred             HHHHHH
Q 026767          106 DAATFL  111 (233)
Q Consensus       106 ~A~~~~  111 (233)
                      +|+...
T Consensus       721 KAi~i~  726 (1081)
T KOG1538|consen  721 KAIEIC  726 (1081)
T ss_pred             hhhhhh
Confidence            665543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.34  E-value=0.9  Score=44.42  Aligned_cols=92  Identities=8%  Similarity=0.014  Sum_probs=63.6

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~  140 (233)
                      ...|++|+..|++..+-|+...   ...+++..+|..+++.-.-..--+.|.+|+.-+.......+..--|+.-++||.+
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (932)
T PRK13184        488 EKLYDQALIFYRRIRESFPGRK---EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQR  564 (932)
T ss_pred             hHHHHHHHHHHHHHhhcCCCcc---cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHH
Confidence            3456666666666655554322   1235677888877654332222267777887777777777777778888999999


Q ss_pred             hCCHHHHHHHHHHhh
Q 026767          141 ANDFKQAEKCYNDCS  155 (233)
Q Consensus       141 ~gd~~~A~~~~~~al  155 (233)
                      +|+|++=.++|.-++
T Consensus       565 ~~~~~~~~~~~~~~~  579 (932)
T PRK13184        565 LGEYNEEIKSLLLAL  579 (932)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            999999999998886

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.32  E-value=4.6  Score=32.14  Aligned_cols=119  Identities=18%  Similarity=0.150  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHcC----------CchHHHHHHHHHHHHhh--hCCHHHHHHHH-------HHHHHHHHhcC--ChH
Q 026767           27 EVADFYRKASELYNECG----------RSQPASDALAKAARALE--DAVPEDAIQLY-------TDACIMLEEDD--KEQ   85 (233)
Q Consensus        27 eA~~~~~~A~~l~~~~g----------~~~~~a~~l~~lg~~~~--~g~~~~A~~~~-------~~Al~~~~~~g--~~~   85 (233)
                      .+++-|.+++++.-...          +......+..++..+..  .+..+.-+-+|       +.|...|-+..  ...
T Consensus        59 ~~le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~Wsr~~d~~A~~~fL~~E~~~~l  138 (203)
T PF11207_consen   59 EALEKYSKCIELAAQIQHIKQKERKTDRFRALLHSYQELERLQEETKNSQDPYLLYYHWSRFGDQEALRRFLQLEGTPEL  138 (203)
T ss_pred             HHHHHHHHHHHHHhcCeeechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHHhhccCcHHHHHHHHHHcCCCCC
Confidence            46677888888764332          22333344445554443  12222222222       23444444322  111


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE  148 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~  148 (233)
                      .-+.....+|..|. ..+.++|+.++-+++++.....  ......+.+|+.++..+|+++.|-
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHhcchhhhh
Confidence            22457778888887 6789999999999999876532  334567899999999999998773

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=91.11  E-value=5.7  Score=31.38  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=68.0

Q ss_pred             HHcCCHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHhhh------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026767           20 KELHNWREVAD-FYRKASELYNECGRSQPASDALAKAARALED------AVPEDAIQLYTDACIMLEEDDKEQMAFDLYR   92 (233)
Q Consensus        20 ~~~g~~~eA~~-~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~------g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~   92 (233)
                      ..+|+|-|+|+ -|++|..+|..+=+-.+-+.+..+.|..+..      +++..|+++|..|.+.-    .    ..+-.
T Consensus        38 ~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n----~----~~aC~  109 (248)
T KOG4014|consen   38 QLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN----I----PQACR  109 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC----C----HHHHh
Confidence            35788888884 6999999999998888888888899887662      47899999999998722    1    13455


Q ss_pred             HHHHHHHH-----hc--cHHHHHHHHHHHHH
Q 026767           93 AATNVYIK-----LE--KYADAATFLLRWGL  116 (233)
Q Consensus        93 ~lg~~~~~-----~g--~~~~A~~~~~~al~  116 (233)
                      ++|.++..     -+  +..+|.++++++-+
T Consensus       110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd  140 (248)
T KOG4014|consen  110 YLGLLHWNGEKDRKADPDSEKAERYMTRACD  140 (248)
T ss_pred             hhhhhhccCcCCccCCCCcHHHHHHHHHhcc
Confidence            67777653     22  47899999998864

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.74  E-value=9.4  Score=32.34  Aligned_cols=174  Identities=6%  Similarity=0.005  Sum_probs=110.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHH
Q 026767           15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-AFDLYR   92 (233)
Q Consensus        15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-~~~~l~   92 (233)
                      +..++.+.|.|.+|+....--+.-+.+..|......++.--..+|. -.+..++...+..|-......--+.+ .++.=.
T Consensus       131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL  210 (421)
T COG5159         131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL  210 (421)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence            3345566888999999888888888888887777777776777777 57777777777777666665543332 333333


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH--HHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767           93 AATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY--LSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT  170 (233)
Q Consensus        93 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~--~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~  170 (233)
                      .-|.+++.-.+|..|..||-++++-+............+  .-+..+.+  ...++-...+..=..+. .-..+--+++.
T Consensus       211 ~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~-~y~~r~I~am~  287 (421)
T COG5159         211 LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIML--NRREEVKAVLRNKNTLK-HYDDRMIRAML  287 (421)
T ss_pred             hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH--hhHHHHHHHHccchhHh-hhhhhhHHHHH
Confidence            346677888899999999999998877655544333333  22333332  22222221111100011 01234456788


Q ss_pred             HHHHHHhcCCHHHHHHHHhhc
Q 026767          171 KLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       171 ~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      ...+++.+.+...+..++++|
T Consensus       288 avaea~~NRsL~df~~aL~qY  308 (421)
T COG5159         288 AVAEAFGNRSLKDFSDALAQY  308 (421)
T ss_pred             HHHHHhCCCcHhhHHHHHHHh
Confidence            888888888888888888887

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.73  E-value=3.5  Score=27.40  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      |..+...|.-.. .|+|++|+.+|..|++++..
T Consensus         6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            344444555555 58888888888888887765

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=90.67  E-value=9.5  Score=32.32  Aligned_cols=117  Identities=9%  Similarity=-0.045  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ....++++.|+|..|.+.++.+.+.++..+.+.-....|-.-..-.+-.++|.+|. +.-..   +..+.+=.+++.-|+
T Consensus       111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~---e~lE~~~~~iEkGgD  187 (412)
T COG5187         111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVE---ESLEVADDIIEKGGD  187 (412)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCC
Confidence            34567888999999999999999999888888877777766666666667777776 32223   334455566666665


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT  124 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  124 (233)
                      +.-....-.-.|.......++.+|..++...+..+......
T Consensus       188 WeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~  228 (412)
T COG5187         188 WERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELI  228 (412)
T ss_pred             HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccc
Confidence            54444333445666777788888888888887766655433

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.64  E-value=0.78  Score=37.88  Aligned_cols=42  Identities=21%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHH
Q 026767           28 VADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDAC   75 (233)
Q Consensus        28 A~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al   75 (233)
                      |..||.+|..+.-      ..+..++.+|.++. .|+.-.|+=+|-||+
T Consensus         1 A~~~Y~~A~~l~P------~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl   43 (278)
T PF10373_consen    1 AERYYRKAIRLLP------SNGNPYNQLAVLASYQGDDLDAVYYYIRSL   43 (278)
T ss_dssp             HHHHHHHHHHH-T------TBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCC------CCCCcccchhhhhccccchHHHHHHHHHHH
Confidence            3445555555531      23455555555555 455555555555554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=90.42  E-value=11  Score=33.57  Aligned_cols=105  Identities=10%  Similarity=-0.091  Sum_probs=80.4

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHhHc-
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKY-------ADAATFLLRWGLAADKC-  121 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~-------~~A~~~~~~al~~~~~~-  121 (233)
                      ....+|.... .+||+-|...|+-...-|.........+.++.-+|..+...+..       +....+++.|...+... 
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            4567888888 79999999999999999998887777777888888877776643       47778888888888773 


Q ss_pred             ----cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          122 ----NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       122 ----~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                          .......++.+..+.++...|.+.+|...+-+..
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~  327 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWT  327 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence                2334556777788888888888877766555543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.34  E-value=3.9  Score=39.14  Aligned_cols=50  Identities=18%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHcCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767           30 DFYRKASELYNECGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLE   79 (233)
Q Consensus        30 ~~~~~A~~l~~~~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~   79 (233)
                      ..|.-|+.+....+. ....+.+..+.|..+. +|++++|..+|-+++...+
T Consensus       348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le  399 (933)
T KOG2114|consen  348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE  399 (933)
T ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence            357777788776655 5567778888888877 8999999999998885443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.34  E-value=9.3  Score=34.36  Aligned_cols=40  Identities=10%  Similarity=0.013  Sum_probs=26.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767           72 TDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWG  115 (233)
Q Consensus        72 ~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al  115 (233)
                      +.|+++..+.+++    ..+..+|...+.+|+++-|.++|+++-
T Consensus       335 ~~A~~~a~~~~~~----~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  335 DIALEIAKELDDP----EKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             HHHHHHCCCCSTH----HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             HHHHHHHHhcCcH----HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            3444455554433    367777777778888887777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=90.32  E-value=4.8  Score=38.04  Aligned_cols=107  Identities=13%  Similarity=0.140  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------HHcCCchHHHH-------HHHHHHHHhh-hCCHHHHHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELY---------NECGRSQPASD-------ALAKAARALE-DAVPEDAIQ   69 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~---------~~~g~~~~~a~-------~l~~lg~~~~-~g~~~~A~~   69 (233)
                      +.-.+++++|..+.++..+.+|.+||.++-..-         ..-|+....+.       .+-.+|.++. .|.-++|.+
T Consensus       794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~  873 (1189)
T KOG2041|consen  794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE  873 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence            345678888888888888888888887653321         11122222221       2334455666 466666666


Q ss_pred             HHH-------------------HHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 026767           70 LYT-------------------DACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRW  114 (233)
Q Consensus        70 ~~~-------------------~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~a  114 (233)
                      .|.                   +|+++.....-+. ....+-+.+.-++.-++.-+|++.++++
T Consensus       874 a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~q-v~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  874 AYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQ-VQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence            553                   2333333322111 1112233334445566777777777765

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.28  E-value=3.1  Score=27.64  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNE   41 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~   41 (233)
                      ..|..+..-|.-+-..|++++|+.+|.+|++++..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            34566777777788899999999999999999865

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.14  E-value=1.9  Score=37.10  Aligned_cols=93  Identities=15%  Similarity=0.013  Sum_probs=71.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026767           16 AALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAA   94 (233)
Q Consensus        16 g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~l   94 (233)
                      +..+.+.|-+++|....++|+++-    ..  -+++..-.+.+++ .|++.++.++..+.-...++..  ..+..-+-.-
T Consensus       182 aFgL~E~g~y~dAEk~A~ralqiN----~~--D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~--mlasHNyWH~  253 (491)
T KOG2610|consen  182 AFGLEECGIYDDAEKQADRALQIN----RF--DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW--MLASHNYWHT  253 (491)
T ss_pred             HhhHHHhccchhHHHHHHhhccCC----Cc--chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh--HHHhhhhHHH
Confidence            444557889999999888888763    23  4677777888999 7999999999998888887322  2333455667


Q ss_pred             HHHHHHhccHHHHHHHHHHHHH
Q 026767           95 TNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        95 g~~~~~~g~~~~A~~~~~~al~  116 (233)
                      +.+|++.+.|+.|++.|.+-+-
T Consensus       254 Al~~iE~aeye~aleIyD~ei~  275 (491)
T KOG2610|consen  254 ALFHIEGAEYEKALEIYDREIW  275 (491)
T ss_pred             HHhhhcccchhHHHHHHHHHHH
Confidence            8889999999999999998664

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=89.85  E-value=1.4  Score=27.07  Aligned_cols=43  Identities=12%  Similarity=0.203  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLIS  174 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~  174 (233)
                      +++.++..+.+.|+|.+|+++.+..+.+.-  ...++..|..+++
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP--~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP--DNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--S-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CcHHHHHHHHHHH
Confidence            467888999999999999999999985431  2356666666654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.74  E-value=4.5  Score=27.10  Aligned_cols=74  Identities=14%  Similarity=0.026  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      .++-...-|.-+....+.++|+...++++.-...   +.+.-.++.-+..+|. .|.|.+.+++--+=+++.++.+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            3444455555555688899999999999987654   4455666777778888 699999999999999998887764

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=89.68  E-value=1.7  Score=28.08  Aligned_cols=31  Identities=29%  Similarity=0.312  Sum_probs=16.3

Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767           50 DALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      ..+.+.|.-.. .|++++|+.+|.+|++.+..
T Consensus         6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    6 IELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            33444444445 45556666666666555543

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.54  E-value=0.72  Score=27.21  Aligned_cols=25  Identities=16%  Similarity=0.113  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                      .+++..|+.+|+++.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4688999999999999999998884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=89.36  E-value=3.9  Score=29.94  Aligned_cols=31  Identities=19%  Similarity=0.005  Sum_probs=19.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECG   43 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g   43 (233)
                      ..+|+.....+++-.++-+|++|+.+..+..
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~se~~~   35 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSLSEEID   35 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence            3455555556666677777777776666553

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.21  E-value=4.4  Score=35.90  Aligned_cols=148  Identities=9%  Similarity=-0.129  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      -.+.++-.++.+++..+..-.+..+.-.+.....+.....-.+..--+++..+. .|.+++|+.....|+.+.--.|--.
T Consensus       311 m~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~  390 (482)
T KOG4322|consen  311 MLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLD  390 (482)
T ss_pred             HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchh
Confidence            345556667777776666677777777777776666666667776677777777 7999999999999998877766221


Q ss_pred             HHH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHH---HHHHHHHHhh
Q 026767           86 MAF-------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFK---QAEKCYNDCS  155 (233)
Q Consensus        86 ~~~-------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~---~A~~~~~~al  155 (233)
                      ..+       .|+..-+..+ ...+.+.+.++++++-..+.+.+-.-....+..-.+..|-..||.+   ++...|+++.
T Consensus       391 drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~  469 (482)
T KOG4322|consen  391 DRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW  469 (482)
T ss_pred             hcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            111       2222222222 6778899999999999999888877667777788888888888764   3444556654

>PRK10941 hypothetical protein; Provisional

Probab=89.17  E-value=7.7  Score=32.43  Aligned_cols=91  Identities=10%  Similarity=-0.083  Sum_probs=66.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-
Q 026767           77 MLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-  155 (233)
Q Consensus        77 ~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-  155 (233)
                      .+....+.......++++=.+|.+.++++.|+.+.++.+.+.-      ....-+..-|.+|..+|.+..|..-++.++ 
T Consensus       170 ~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P------~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~  243 (269)
T PRK10941        170 DLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDP------EDPYEIRDRGLIYAQLDCEHVALSDLSYFVE  243 (269)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3444455666778899999999999999999999999997632      222345678999999999999999999988 


Q ss_pred             cCCCCCCchHHHHHHHHHHHH
Q 026767          156 QVDAFLRSDQNRCATKLISAY  176 (233)
Q Consensus       156 ~~~~~~~~~e~~~l~~L~~a~  176 (233)
                      ..+.-   ..+..+......+
T Consensus       244 ~~P~d---p~a~~ik~ql~~l  261 (269)
T PRK10941        244 QCPED---PISEMIRAQIHSI  261 (269)
T ss_pred             hCCCc---hhHHHHHHHHHHH
Confidence            44422   2344454444444

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.17  E-value=1.5  Score=29.39  Aligned_cols=34  Identities=21%  Similarity=0.071  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767           48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus        48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      .|..+.+.|.-+. .|+.++|+.+|++++.+..+.
T Consensus         7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg   41 (79)
T cd02679           7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEG   41 (79)
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            4444455555555 466667777777777666543

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=89.13  E-value=1.6  Score=36.33  Aligned_cols=94  Identities=12%  Similarity=-0.034  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhh----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767           49 SDALAKAARALE----DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT  124 (233)
Q Consensus        49 a~~l~~lg~~~~----~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  124 (233)
                      +.++..+-..+.    .-.+..|.++...|+-..+..|++...+.|-...+..|....+|.-|..||..|+.++.+...+
T Consensus        36 a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~  115 (368)
T COG5091          36 AACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLP  115 (368)
T ss_pred             hhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccch
Confidence            344555544444    2457889999999999999999999999999999999999999999999999999998877777


Q ss_pred             chHHHhHHHHHHHHHhhC
Q 026767          125 NSQCKAYLSAIIVYLYAN  142 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~g  142 (233)
                      ..+.+.-..|-.++-++.
T Consensus       116 ~We~rLet~L~~~~kkQ~  133 (368)
T COG5091         116 LWEDRLETKLNKKNKKQK  133 (368)
T ss_pred             HHHHHHHHHHhHhhHhhc
Confidence            666665566666665554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.12  E-value=3.8  Score=36.36  Aligned_cols=99  Identities=14%  Similarity=0.059  Sum_probs=66.3

Q ss_pred             HHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcC-----------C-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           51 ALAKAARALEDAVPEDAIQLYTDACIMLEEDD-----------K-EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        51 ~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g-----------~-~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      +|......|.++.|..|+--|..|+++.....           + ...+..+-..|..+|+++++.+-|+.+-.+++.+ 
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-  257 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-  257 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-
Confidence            34455555667777777777777777766432           1 2223345567888899999999999988888754 


Q ss_pred             hHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          119 DKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       119 ~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                           .+.--.-++.-+.|...+.+|.+|-+.+--+.
T Consensus       258 -----nP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  258 -----NPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             -----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 22233345666778888888888877665543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=88.98  E-value=0.45  Score=42.39  Aligned_cols=83  Identities=19%  Similarity=0.149  Sum_probs=42.4

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~  140 (233)
                      ..+++.|+..|.+|+++-+..-      ..+.+-+..+++.++|..|+.=+.+++++      .+...++|..-|.++.+
T Consensus        17 ~~~fd~avdlysKaI~ldpnca------~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~m~   84 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCA------IYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAVMA   84 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcce------eeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHHHh
Confidence            4555566666666655544321      12223334455555555555555555543      24444555555555555


Q ss_pred             hCCHHHHHHHHHHhh
Q 026767          141 ANDFKQAEKCYNDCS  155 (233)
Q Consensus       141 ~gd~~~A~~~~~~al  155 (233)
                      .+++.+|...|+...
T Consensus        85 l~~~~~A~~~l~~~~   99 (476)
T KOG0376|consen   85 LGEFKKALLDLEKVK   99 (476)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            555555555555544

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=88.90  E-value=1.4  Score=28.47  Aligned_cols=22  Identities=9%  Similarity=-0.114  Sum_probs=13.7

Q ss_pred             HHhccHHHHHHHHHHHHHHHhH
Q 026767           99 IKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        99 ~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      =+.|+|.+|+.+|.++++.+..
T Consensus        16 D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen   16 DEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHH
Confidence            3466666666666666665543

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.77  E-value=1.6  Score=29.00  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNE   41 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~   41 (233)
                      -|..|..-|.-+-..|++.+|+.+|++|+++..+
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            3445555555555667777777777766666544

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=88.63  E-value=17  Score=33.56  Aligned_cols=102  Identities=17%  Similarity=0.122  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h--CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767           24 NWREVADFYRKASELYNECGRSQPASDALAKAARALE-D--AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK  100 (233)
Q Consensus        24 ~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~--g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~  100 (233)
                      +-.|-..+-++-+-+.-..|....--.++.++|.+-+ .  ..-..+++.|.+|+...+..-+.... .-|.-+|-.|.+
T Consensus       252 d~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv-YPYty~gg~~yR  330 (618)
T PF05053_consen  252 DSVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV-YPYTYLGGYYYR  330 (618)
T ss_dssp             EEHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S-HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc-ccceehhhHHHH
Confidence            4457777888888888899999888899999999877 3  34466799999999988876543332 478889999999


Q ss_pred             hccHHHHHHHHHHHHHHHhHccCcch
Q 026767          101 LEKYADAATFLLRWGLAADKCNATNS  126 (233)
Q Consensus       101 ~g~~~~A~~~~~~al~~~~~~~~~~~  126 (233)
                      .++|.+|+.+.-.+..+.+.-+-.+.
T Consensus       331 ~~~~~eA~~~Wa~aa~Vi~~YnY~re  356 (618)
T PF05053_consen  331 HKRYREALRSWAEAADVIRKYNYSRE  356 (618)
T ss_dssp             TT-HHHHHHHHHHHHHHHTTSB--GG
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCcc
Confidence            99999999999999888776554433

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.54  E-value=0.32  Score=41.59  Aligned_cols=98  Identities=20%  Similarity=0.105  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .|+-..-.+.-....|.+++|++.|..|+.+      ....|..+.+-+.++. ...+..|++-|..|+++-.+...   
T Consensus       113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~---  183 (377)
T KOG1308|consen  113 QANDKKVQASEALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK---  183 (377)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc---
Confidence            3444444444445589999999999999887      4567888888999998 79999999999999999876542   


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                         -+---|..+..+|++.+|...+..+..+
T Consensus       184 ---~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  184 ---GYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             ---ccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence               2223344455689999999999988754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.45  E-value=19  Score=32.68  Aligned_cols=159  Identities=13%  Similarity=0.059  Sum_probs=109.1

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026767           20 KELHNWREVADFYRKASELYNE---CGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAA   94 (233)
Q Consensus        20 ~~~g~~~eA~~~~~~A~~l~~~---~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~l   94 (233)
                      -..|+.+.-.+-|++|+.-..-   ...-..-.-.+.|-+..-+  ..+.+.+.+.|+.++++.+.-.  -.-+.+..-.
T Consensus       333 e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk--FtFaKiWlmy  410 (677)
T KOG1915|consen  333 ESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK--FTFAKIWLMY  410 (677)
T ss_pred             HhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc--chHHHHHHHH
Confidence            3468888888888888753211   0001111223444444433  2899999999999999877433  2334677888


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 026767           95 TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLIS  174 (233)
Q Consensus        95 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~  174 (233)
                      +.+-+++.+...|...+-.|+-.|-+       .+.+-.-..+-++++++++.++.|++.+...    ++.|..-...++
T Consensus       411 A~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~~----Pe~c~~W~kyaE  479 (677)
T KOG1915|consen  411 AQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEFS----PENCYAWSKYAE  479 (677)
T ss_pred             HHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----hHhhHHHHHHHH
Confidence            99999999999999999998866533       3445566677788899999999999998442    233455555555


Q ss_pred             HH-hcCCHHHHHHHHhhc
Q 026767          175 AY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       175 a~-~~gd~~~a~~~~~~~  191 (233)
                      .- ..||++.++...+-+
T Consensus       480 lE~~LgdtdRaRaifelA  497 (677)
T KOG1915|consen  480 LETSLGDTDRARAIFELA  497 (677)
T ss_pred             HHHHhhhHHHHHHHHHHH
Confidence            44 468999988877666

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=88.09  E-value=2.3  Score=27.97  Aligned_cols=20  Identities=35%  Similarity=0.385  Sum_probs=10.2

Q ss_pred             hCCHHHHHHHHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .|++++|+.+|.+|++.+..
T Consensus        21 ~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745       21 AGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             cCCHHHHHHHHHHHHHHHHH
Confidence            35555555555555555443

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=88.08  E-value=8.5  Score=28.20  Aligned_cols=87  Identities=16%  Similarity=0.066  Sum_probs=60.1

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC--------h-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDK--------E-QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~--------~-~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      +..+|.... .+++-.++-+|++|+.+..+...        . ........|++.++...|+.+=.+.|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            455677666 79999999999999999888741        1 1112356799999999999999999998776654433


Q ss_pred             c--CcchHHHhH-HHHHHHH
Q 026767          122 N--ATNSQCKAY-LSAIIVY  138 (233)
Q Consensus       122 ~--~~~~~a~~~-~~lg~~~  138 (233)
                      -  -+.....++ .++|.|.
T Consensus        84 iPQCp~~~C~afi~sLGCCk  103 (140)
T PF10952_consen   84 IPQCPNTECEAFIDSLGCCK  103 (140)
T ss_pred             ccCCCCcchHHHHHhhhccH
Confidence            1  123333443 6666654

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.72  E-value=6.1  Score=34.85  Aligned_cols=87  Identities=8%  Similarity=0.078  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH
Q 026767           69 QLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE  148 (233)
Q Consensus        69 ~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~  148 (233)
                      +-++.=++-++...-....-..+..+|..|...|+.+.|+..|-|+...|...   ......+.++..|-..+|++..-.
T Consensus       131 e~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---khvInm~ln~i~VSI~~~nw~hv~  207 (466)
T KOG0686|consen  131 EKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---KHVINMCLNLILVSIYMGNWGHVL  207 (466)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---HHHHHHHHHHHHHHHhhcchhhhh
Confidence            33444445555555444445689999999999999999999999999988753   345567899999999999999988


Q ss_pred             HHHHHhhcCC
Q 026767          149 KCYNDCSQVD  158 (233)
Q Consensus       149 ~~~~~al~~~  158 (233)
                      .+-.++.+.+
T Consensus       208 sy~~~A~st~  217 (466)
T KOG0686|consen  208 SYISKAESTP  217 (466)
T ss_pred             hHHHHHHhCc
Confidence            8888887554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.60  E-value=13  Score=33.09  Aligned_cols=105  Identities=16%  Similarity=0.067  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---c--------CCch-HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNE---C--------GRSQ-PASDALAKAARALE-DAVPEDAIQLYTDACIM   77 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~---~--------g~~~-~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~   77 (233)
                      ++..+...|+ ++.|.-|.--|..|+++..+   .        ||.. -+..+-.++..+|. .++++-|+.+-.+++.+
T Consensus       179 AL~das~~yr-qk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l  257 (569)
T PF15015_consen  179 ALKDASSCYR-QKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL  257 (569)
T ss_pred             HHHHHHHHHh-hHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence            4555555555 78899999999999998754   2        2222 23345678888898 79999999999999987


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767           78 LEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN  122 (233)
Q Consensus        78 ~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  122 (233)
                      .+..-      .-+..-+.++..+.+|.+|...+--+.-++--.+
T Consensus       258 nP~~f------rnHLrqAavfR~LeRy~eAarSamia~ymywl~g  296 (569)
T PF15015_consen  258 NPSYF------RNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG  296 (569)
T ss_pred             Ccchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            66432      1233456677788999999988777766654443

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.36  E-value=1.7  Score=29.08  Aligned_cols=35  Identities=23%  Similarity=0.119  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELY   39 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~   39 (233)
                      .+..|-.+.+-|.-+-+.|+.++|+.+|++++...
T Consensus         4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l   38 (79)
T cd02679           4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLREL   38 (79)
T ss_pred             HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=87.26  E-value=1.1  Score=36.40  Aligned_cols=56  Identities=14%  Similarity=0.077  Sum_probs=43.8

Q ss_pred             HHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           97 VYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        97 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      ...+.++++.|.+.|.+++++.-      ..+..++.+|....+.|+++.|.+.|++.+.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap------~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld   59 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAP------EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD   59 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCc------hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence            44567888999999999987642      234467888999999999999999999988553

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.07  E-value=3.5  Score=40.47  Aligned_cols=91  Identities=19%  Similarity=0.080  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCc-hH---HHHHHHHHHHHhh-h----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026767           24 NWREVADFYRKASELYNECGRS-QP---ASDALAKAARALE-D----AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAA   94 (233)
Q Consensus        24 ~~~eA~~~~~~A~~l~~~~g~~-~~---~a~~l~~lg~~~~-~----g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~l   94 (233)
                      |.=-|...|++|+..|++.+.. .|   .-.+..++|..+. +    |++    +.|.+|+.-|.......++-.=+..-
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLGK  558 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHhH
Confidence            3345677888888888887653 22   2245667777655 3    444    77888888888877666655455666


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHH
Q 026767           95 TNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        95 g~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      +.||.++|+|++=+++|.-|+.-+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~  582 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRY  582 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhc
Confidence            778999999999999999988643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.90  E-value=13  Score=33.43  Aligned_cols=102  Identities=21%  Similarity=0.216  Sum_probs=58.0

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKA  130 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~  130 (233)
                      ..+++..++ +|.++.|++.-+.--.              ..   ++.+++|+.+.|.+..+       +..+    ...
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~~--------------rF---eLAl~lg~L~~A~~~a~-------~~~~----~~~  349 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPDH--------------RF---ELALQLGNLDIALEIAK-------ELDD----PEK  349 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HHH--------------HH---HHHHHCT-HHHHHHHCC-------CCST----HHH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChHH--------------Hh---HHHHhcCCHHHHHHHHH-------hcCc----HHH
Confidence            455666666 6887777766432211              11   23456788877776443       2221    236


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHhhcCCC--C--CCchHHHHHHHHHHHH-hcCCH
Q 026767          131 YLSAIIVYLYANDFKQAEKCYNDCSQVDA--F--LRSDQNRCATKLISAY-TEGDV  181 (233)
Q Consensus       131 ~~~lg~~~~~~gd~~~A~~~~~~al~~~~--~--~~~~e~~~l~~L~~a~-~~gd~  181 (233)
                      |..||.+.+.+|+++-|+++|+++-....  +  .-++...-|..|+... ..|+.
T Consensus       350 W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~  405 (443)
T PF04053_consen  350 WKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDI  405 (443)
T ss_dssp             HHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCH
Confidence            78899999999999999999998753322  1  1234445556665544 44543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.74  E-value=13  Score=31.03  Aligned_cols=132  Identities=15%  Similarity=0.064  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHcCCchHHH------------HHHHHHHHHhh-h-CCHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASEL---------YNECGRSQPAS------------DALAKAARALE-D-AVPEDA   67 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l---------~~~~g~~~~~a------------~~l~~lg~~~~-~-g~~~~A   67 (233)
                      ...-.|.+|..-+++++|.....+...+         +.+.....-+-            ..+..+|..+. . +--   
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gg---  186 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGG---  186 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccc---
Confidence            3455678888899999998876542221         11111111111            12334444443 1 111   


Q ss_pred             HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHH
Q 026767           68 IQLYTDACIMLEEDDK-EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQ  146 (233)
Q Consensus        68 ~~~~~~Al~~~~~~g~-~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~  146 (233)
                       .-++.|.=+|++... ...--.+++..+.+++.+|+|++|...++.++.-      ...-..++.|+..+-+..|...+
T Consensus       187 -ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------d~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  187 -EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK------DAKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             -hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHhCCChH
Confidence             113444445554432 2222357899999999999999999999999863      22235678888888888997766


Q ss_pred             HHHHHH
Q 026767          147 AEKCYN  152 (233)
Q Consensus       147 A~~~~~  152 (233)
                      +...+-
T Consensus       260 ~~~r~l  265 (299)
T KOG3081|consen  260 VTERNL  265 (299)
T ss_pred             HHHHHH
Confidence            655443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.66  E-value=21  Score=31.17  Aligned_cols=140  Identities=8%  Similarity=0.005  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CchHHH-------------HHHHHHHHHhh-hCCH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECG----------RSQPAS-------------DALAKAARALE-DAVP   64 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g----------~~~~~a-------------~~l~~lg~~~~-~g~~   64 (233)
                      ..++.+++.+++.+|++..|.++.++|+=.+...=          -..+.+             .++.+-...+. +|-+
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~  119 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW  119 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence            35788899999999999999999999998876310          000111             23333344444 6899


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HhH-ccCcchHHHhHHHHHHHHHhhC
Q 026767           65 EDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA-ADK-CNATNSQCKAYLSAIIVYLYAN  142 (233)
Q Consensus        65 ~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~~~-~~~~~~~a~~~~~lg~~~~~~g  142 (233)
                      ..|+++.+--+.+-... |+.+   ++.-|-...++.++|+==+++++..... .+. ....+   ..-++++++++..+
T Consensus       120 rTAlE~~KlLlsLdp~~-DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP---n~a~S~aLA~~~l~  192 (360)
T PF04910_consen  120 RTALEWCKLLLSLDPDE-DPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP---NFAFSIALAYFRLE  192 (360)
T ss_pred             HHHHHHHHHHHhcCCCC-Ccch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc---cHHHHHHHHHHHhc
Confidence            99999888777776654 4443   5556666777889998888888765542 111 11112   23477888888888


Q ss_pred             CH---------------HHHHHHHHHhh
Q 026767          143 DF---------------KQAEKCYNDCS  155 (233)
Q Consensus       143 d~---------------~~A~~~~~~al  155 (233)
                      +-               ++|...+.+|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai  220 (360)
T PF04910_consen  193 KEESSQSSAQSGRSENSESADEALQKAI  220 (360)
T ss_pred             CccccccccccccccchhHHHHHHHHHH
Confidence            87               88888888886

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.65  E-value=20  Score=35.62  Aligned_cols=148  Identities=13%  Similarity=0.134  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Q 026767           30 DFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAAT  109 (233)
Q Consensus        30 ~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~  109 (233)
                      ++|++|..+|++.+-...+.+++..=     -+..+.|.       +..+..+.+    .++..+|....+.|...+|++
T Consensus      1062 ~LyEEAF~ifkkf~~n~~A~~VLie~-----i~~ldRA~-------efAe~~n~p----~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIEN-----IGSLDRAY-------EFAERCNEP----AVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHH-----hhhHHHHH-------HHHHhhCCh----HHHHHHHHHHHhcCchHHHHH
Confidence            56777777777766655554433210     13333333       333333332    366777777777777777777


Q ss_pred             HHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-C----------------------CCCCchHH
Q 026767          110 FLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-D----------------------AFLRSDQN  166 (233)
Q Consensus       110 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~----------------------~~~~~~e~  166 (233)
                      .|-++=       ++    ..|.....+.-..|.|++-.+++..+-.- .                      .|......
T Consensus      1126 Syikad-------Dp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~ 1194 (1666)
T KOG0985|consen 1126 SYIKAD-------DP----SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNV 1194 (1666)
T ss_pred             HHHhcC-------Cc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCc
Confidence            766542       11    24555666666667776666666665411 0                      01001112


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHh
Q 026767          167 RCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLA  204 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~  204 (233)
                      .-+...|+-+ +.+-+++|.-....- -|..|....+.|+
T Consensus      1195 A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred             hhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            2345566544 677777666655544 4555555444443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.24  E-value=2.7  Score=27.90  Aligned_cols=34  Identities=29%  Similarity=0.255  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767           48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus        48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      .|..+...|.-+. .|++.+|+.+|++|++++.+.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            3445555566666 688888888888888777653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.16  E-value=3.5  Score=27.17  Aligned_cols=20  Identities=25%  Similarity=0.310  Sum_probs=10.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .|++++|+.+|.+|++.+..
T Consensus        19 ~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678          19 AGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             cCCHHHHHHHHHHHHHHHHH
Confidence            35555555555555555543

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.93  E-value=31  Score=32.49  Aligned_cols=99  Identities=21%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA  169 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l  169 (233)
                      ++-+-+.-+.+..+|..+++.|..++..+........-++...++..||+.+...++|.+++++|-.........+..  
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~--  433 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL--  433 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH--
Confidence            444556677889999999999999998766555555558888999999999999999999999986433211111111  


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhc
Q 026767          170 TKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       170 ~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                       .+-.+...+..++|..++...
T Consensus       434 -~~~~~~~E~~Se~AL~~~~~~  454 (872)
T KOG4814|consen  434 -MLQSFLAEDKSEEALTCLQKI  454 (872)
T ss_pred             -HHHHHHHhcchHHHHHHHHHH
Confidence             111122456777777776655

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=85.86  E-value=22  Score=30.71  Aligned_cols=160  Identities=13%  Similarity=0.135  Sum_probs=110.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch-HHHhHHHHHH-HHH
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS-QCKAYLSAII-VYL  139 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~lg~-~~~  139 (233)
                      +|.++|+++.++-.+-......+.....+...++.++...|+..++.+.+...-........-.. .-..|+.++- .|.
T Consensus        89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk  168 (380)
T KOG2908|consen   89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYK  168 (380)
T ss_pred             ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHH
Confidence            79999999999999999998887677788899999999999999999999888776655443333 3334555544 455


Q ss_pred             hhCCHHHHHHHHHHhhcCCCC---CCchHHHHHHHHHHHHhcCC-HHHHHHHHhhcccccc----hHHHHHHhccCCCCc
Q 026767          140 YANDFKQAEKCYNDCSQVDAF---LRSDQNRCATKLISAYTEGD-VEEIKRVAQSSAISNL----DHVIIKLARKLPTGD  211 (233)
Q Consensus       140 ~~gd~~~A~~~~~~al~~~~~---~~~~e~~~l~~L~~a~~~gd-~~~a~~~~~~~~~~~l----d~~~~~l~~~l~~~~  211 (233)
                      ..||+...-++.-+++.....   ..++.......|+.+--.|| .=-+-+.+-.+++..|    -.|...+..-...|+
T Consensus       169 ~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gd  248 (380)
T KOG2908|consen  169 KIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGD  248 (380)
T ss_pred             HHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCC
Confidence            668998888887777754432   23333334444444333344 4455566666644444    257888877778888


Q ss_pred             hh---hhhhhhcC
Q 026767          212 VS---ALKKANAV  221 (233)
Q Consensus       212 ~~---~~~~~~~~  221 (233)
                      ++   ++.+..-+
T Consensus       249 l~~f~~l~~~~~~  261 (380)
T KOG2908|consen  249 LKRFESLKGVWGK  261 (380)
T ss_pred             HHHHHHHHHHhcc
Confidence            87   66655544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=85.30  E-value=9.7  Score=26.06  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=37.8

Q ss_pred             chHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHHhcCCH
Q 026767          125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAYTEGDV  181 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~~~gd~  181 (233)
                      +.-..+.+.++..+...|++++|.+.+-+.+ ..+.+.+..-...+..+.+.+..+|+
T Consensus        19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p   76 (90)
T PF14561_consen   19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP   76 (90)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence            3344677899999999999999999999988 44555554444556666666544544

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.09  E-value=6.9  Score=34.69  Aligned_cols=66  Identities=15%  Similarity=0.106  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc---cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKC---NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      -++..+.++++-+|||..|++.++-. ++-++.   ..+.-...++.-+|-+|+-+++|..|.+.|...+
T Consensus       123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666778899999999999987632 221110   1122334567899999999999999999999987

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.06  E-value=2.7  Score=27.95  Aligned_cols=30  Identities=20%  Similarity=0.301  Sum_probs=19.9

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      -+..-|.-.. .|++++|+.+|.+|++.|..
T Consensus         8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           8 EVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3344444444 47888888888888877765

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=84.99  E-value=17  Score=28.75  Aligned_cols=65  Identities=12%  Similarity=0.053  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      +...+...+..|++++|...++++.+...+.......-..+...|.|-..+-+|++|.-.|.-..
T Consensus        32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~   96 (204)
T COG2178          32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILK   96 (204)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHh
Confidence            34445556678889999999988888777665433333344555667666778888877776543

>PF12854 PPR_1: PPR repeat

Probab=84.83  E-value=2  Score=23.54  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLR  113 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~  113 (233)
                      .+++.+-..|++.|+.++|+++|++
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            3677788888888888888887765

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.40  E-value=3.7  Score=27.32  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNE   41 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~   41 (233)
                      .|..+..-|+-+-..|++++|+.+|.+|++.+..
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4555666667777899999999999999998864

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>smart00671 SEL1 Sel1-like repeats

Probab=84.24  E-value=2.2  Score=23.02  Aligned_cols=26  Identities=23%  Similarity=0.197  Sum_probs=16.2

Q ss_pred             HHHHHHHHhhhC-----CHHHHHHHHHHHHH
Q 026767           51 ALAKAARALEDA-----VPEDAIQLYTDACI   76 (233)
Q Consensus        51 ~l~~lg~~~~~g-----~~~~A~~~~~~Al~   76 (233)
                      +..++|.+|..|     ++.+|+.+|++|.+
T Consensus         3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~   33 (36)
T smart00671        3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE   33 (36)
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence            445566666632     66777777777664

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PF12854 PPR_1: PPR repeat

Probab=84.10  E-value=2.5  Score=23.09  Aligned_cols=26  Identities=19%  Similarity=0.234  Sum_probs=23.1

Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHH
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYND  153 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~  153 (233)
                      ..+|..+...+.+.|+.++|.+.|++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            35789999999999999999999876

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=84.03  E-value=3.4  Score=27.17  Aligned_cols=19  Identities=11%  Similarity=-0.095  Sum_probs=9.2

Q ss_pred             hccHHHHHHHHHHHHHHHh
Q 026767          101 LEKYADAATFLLRWGLAAD  119 (233)
Q Consensus       101 ~g~~~~A~~~~~~al~~~~  119 (233)
                      .|++++|+.+|.++++.+.
T Consensus        21 ~g~~~eAl~~Y~~a~e~l~   39 (77)
T smart00745       21 AGDYEEALELYKKAIEYLL   39 (77)
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence            4445555555555544443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=83.81  E-value=1.8  Score=35.69  Aligned_cols=49  Identities=12%  Similarity=0.103  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED   61 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~   61 (233)
                      +.++.|+++|.++...|+.-+|+-+|-+|+..    -.|.  ..+..|+..++..
T Consensus        14 ~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~----~~Pf--~~A~~NL~~lf~~   62 (278)
T PF10373_consen   14 SNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV----RIPF--PSARENLQKLFEK   62 (278)
T ss_dssp             TBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS----SB----HHHHHHHHHHHHH
T ss_pred             CCCCcccchhhhhccccchHHHHHHHHHHHhc----CCCc--HHHHHHHHHHHHH
Confidence            34678899999999999999999889888743    2232  4455666666653

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.34  E-value=5.3  Score=26.14  Aligned_cols=19  Identities=32%  Similarity=0.401  Sum_probs=9.2

Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 026767           62 AVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~   80 (233)
                      |++++|+.+|..|++.+..
T Consensus        20 g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656          20 GNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            4445555555555544443

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.26  E-value=35  Score=34.37  Aligned_cols=108  Identities=15%  Similarity=0.077  Sum_probs=60.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh-------hhC----CHHHHHHHHHHHHHHHHhcCC
Q 026767           15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARAL-------EDA----VPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus        15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~-------~~g----~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      .|.+|...|...+|+.+|.+|+.-+       +..++|.++-.-.       .+|    ....|++||.+++.++++.+.
T Consensus       926 lg~~yl~tge~~kAl~cF~~a~Sg~-------ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~  998 (1480)
T KOG4521|consen  926 LGIAYLGTGEPVKALNCFQSALSGF-------GEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH  998 (1480)
T ss_pred             hheeeecCCchHHHHHHHHHHhhcc-------ccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence            4555667788889999998887654       2333444443331       123    234578888888888887653


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHH
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCY  151 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~  151 (233)
                      ..                    .++++...|++....  +.+..+..+..+-.-++.+|.+.+|.+.+
T Consensus       999 ~E--------------------~vcQlA~~AIe~l~d--d~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen  999 AE--------------------EVCQLAVKAIENLPD--DNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred             HH--------------------HHHHHHHHHHHhCCC--cchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence            32                    333333344432211  22334444455555666666666655443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=82.84  E-value=34  Score=30.39  Aligned_cols=123  Identities=9%  Similarity=-0.001  Sum_probs=78.3

Q ss_pred             HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHH
Q 026767           56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSA  134 (233)
Q Consensus        56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l  134 (233)
                      |.+-. .||-..|.+.-.++-.+......+    .+..--+..-.--|+|+.|..-|+-.+.      ++...---+..|
T Consensus        91 GliAagAGda~lARkmt~~~~~llssDqep----LIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgL  160 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLSSDQEP----LIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGL  160 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhhccchH----HHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHH
Confidence            44555 589999999999988777665432    1222234444557999999999987663      222221122334


Q ss_pred             HHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          135 IIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       135 g~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      -+--.+.|+.+.|+.|-+++........+--...|.   ..++.||.+.+...+...
T Consensus       161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe---~r~~~gdWd~AlkLvd~~  214 (531)
T COG3898         161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE---ARCAAGDWDGALKLVDAQ  214 (531)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH---HHHhcCChHHHHHHHHHH
Confidence            444456799999999999987544333332222222   234789999999888876

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=82.51  E-value=3.5  Score=35.18  Aligned_cols=67  Identities=16%  Similarity=0.118  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .+.-++..++.+++ .|..++|...|+-|+.+.-      .--.++..+|...+ ..+.-+|-++|-+|+.+.+.
T Consensus       115 EA~~Al~~A~~~~~-~Gk~ekA~~lfeHAlalaP------~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~  182 (472)
T KOG3824|consen  115 EAILALKAAGRSRK-DGKLEKAMTLFEHALALAP------TNPQILIEMGQFREMHNEIVEADQCYVKALTISPG  182 (472)
T ss_pred             HHHHHHHHHHHHHh-ccchHHHHHHHHHHHhcCC------CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence            44556666777776 7899999999999988742      34567888999988 68888999999999877653

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=81.80  E-value=32  Score=29.32  Aligned_cols=126  Identities=12%  Similarity=-0.030  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcc
Q 026767           25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEK  103 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~  103 (233)
                      .++-++-+.++++-.++.+--...+.++.|+|..|. -++.+.+.++..+.+.-.-..|-......|-..+|.+|..+.=
T Consensus        91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~v  170 (412)
T COG5187          91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKV  170 (412)
T ss_pred             hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHH
Confidence            345566666666655555545578899999999999 5999999999999998888888766666677888888866655


Q ss_pred             HHHHHHHHHHHHHHHhHccC--cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          104 YADAATFLLRWGLAADKCNA--TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       104 ~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ..+.++...   .+.++-|+  +++.-++|.  |.-....-++.+|-..+..++
T Consensus       171 V~e~lE~~~---~~iEkGgDWeRrNRyK~Y~--Gi~~m~~RnFkeAa~Ll~d~l  219 (412)
T COG5187         171 VEESLEVAD---DIIEKGGDWERRNRYKVYK--GIFKMMRRNFKEAAILLSDIL  219 (412)
T ss_pred             HHHHHHHHH---HHHHhCCCHHhhhhHHHHH--HHHHHHHHhhHHHHHHHHHHh
Confidence            555555444   33344332  233344444  344444457888888777765

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.77  E-value=4.6  Score=26.56  Aligned_cols=22  Identities=9%  Similarity=-0.139  Sum_probs=15.8

Q ss_pred             HHhccHHHHHHHHHHHHHHHhH
Q 026767           99 IKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        99 ~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      -..|+|.+|+.+|.++++.+..
T Consensus        17 D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678          17 DNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHH
Confidence            3467777788877777777654

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.72  E-value=7  Score=33.08  Aligned_cols=61  Identities=15%  Similarity=0.046  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ..+...+..|.+.|.+.+|+++.++++.+-      +-.-..+..+..++..+||--.|.+.|++..
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltld------pL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD------PLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            345566777889999999999999999762      2223456777888889999999999998864

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=81.66  E-value=3.1  Score=35.48  Aligned_cols=65  Identities=17%  Similarity=0.133  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           48 ASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        48 ~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      +.-+++.++..+.+|..++|...|+.|+.+.+...      +++..+|.+.-...+.-+|=.+|.+|+.+.
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p------~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis  180 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP------QILIEMGQFREMHNEIVEADQCYVKALTIS  180 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH------HHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence            44456666777778999999999999999987543      588899999988899999999999998753

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.62  E-value=13  Score=33.14  Aligned_cols=105  Identities=15%  Similarity=0.056  Sum_probs=62.4

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH-----HHHHHHHHHHHHhcc----------HHHHHHHHHHH
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF-----DLYRAATNVYIKLEK----------YADAATFLLRW  114 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~-----~~l~~lg~~~~~~g~----------~~~A~~~~~~a  114 (233)
                      .+..-|.+.. ...|++|+..+-.|=+.|...+..-...     ..-..+.++|..+.+          ...|...|.++
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            3444455666 5789999999999888888776432211     122344556665542          33333333332


Q ss_pred             H-----HHH-hHccCcchH---HHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          115 G-----LAA-DKCNATNSQ---CKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       115 l-----~~~-~~~~~~~~~---a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      -     .++ .+-+.-+..   -+.++--|.+.+++|.-++|.++++.+.
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~  294 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAH  294 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            1     010 011222222   2445677999999999999999999886

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.27  E-value=6  Score=26.16  Aligned_cols=20  Identities=20%  Similarity=0.282  Sum_probs=13.0

Q ss_pred             hCCHHHHHHHHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .|+|++|..+|..+++.|..
T Consensus        19 ~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677          19 EGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HhhHHHHHHHHHHHHHHHHH
Confidence            36666666666666666654

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.72  E-value=4.7  Score=26.68  Aligned_cols=21  Identities=19%  Similarity=-0.072  Sum_probs=16.9

Q ss_pred             HhccHHHHHHHHHHHHHHHhH
Q 026767          100 KLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~  120 (233)
                      ..|+|.+|..+|..++..+..
T Consensus        18 ~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677          18 EEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHhhHHHHHHHHHHHHHHHHH
Confidence            348888888888888888765

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=80.52  E-value=1.9  Score=38.51  Aligned_cols=97  Identities=19%  Similarity=0.064  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      |+-+-+=++-+...++|+.|+..|.+|+++-.      ..|..+.+-+..+. .+++..|+.-..+|+++-+.      -
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldp------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~   71 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDP------NCAIYFANRALAHLKVESFGGALHDALKAIELDPT------Y   71 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCC------cceeeechhhhhheeechhhhHHHHHHhhhhcCch------h
Confidence            34444555555667899999999999999842      23444555555666 69999999999999988743      2


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ..++..-|..+..++++.+|...|+....+
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            467888888899999999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
2ifu_A	307	Crystal Structure Of A Gamma-Snap From Danio Rerio		2e-08

>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio Length = 307

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 89/204 (43%)
Query: 4   SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXV 63
           S + AAK  E A    K+L    E   +  KAS  Y E G                    
Sbjct: 71  SLFHAAKAFEQAGXXLKDLQRXPEAVQYIEKASVXYVENGTPDTAAXALDRAGKLXEPLD 130
Query: 64  PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA 123
              A+ LY  A  + E +++ + A +L   A+ + ++ +K+ +AA  L +      +   
Sbjct: 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSXYKEXEN 190
Query: 124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEE 183
             +  K  ++ ++V L+  D+  A+KC  +   +  F  S+       L+ AY E D E+
Sbjct: 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQ 250
Query: 184 IKRVAQSSAISNLDHVIIKLARKL 207
           + RV +S  ++  D+   KLA  L
Sbjct: 251 LLRVCRSPLVTYXDNDYAKLAISL 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-45
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	5e-27
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-04

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score =  153 bits (387), Expect = 1e-45
 Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 1/231 (0%)

Query: 2   LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED 61
             S + AAK  E A  + K+L    E   +  KAS +Y E G    A+ AL +A + +E 
Sbjct: 69  NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128

Query: 62  AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC 121
                A+ LY  A  + E +++ + A +L   A+ + ++ +K+ +AA  L +      + 
Sbjct: 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188

Query: 122 NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDV 181
               +  K  ++ ++V L+  D+  A+KC  +   +  F  S+       L+ AY E D 
Sbjct: 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDE 248

Query: 182 EEIKRVAQSSAISNLDHVIIKLARKLP-TGDVSALKKANAVQDEEPLDEND 231
           E++ RV +S  ++ +D+   KLA  L   G     KK +A    +P +E D
Sbjct: 249 EQLLRVCRSPLVTYMDNDYAKLAISLKVPGGGGGKKKPSASASAQPQEEED 299

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score =  104 bits (260), Expect = 5e-27
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 5/201 (2%)

Query: 2   LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED 61
             +  +A      A    K   N     D    A +++   G+ +  ++   +    LE+
Sbjct: 70  AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129

Query: 62  AV--PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD 119
            +     AI  Y  A     +D    ++   +    ++     +Y +A+    +   ++ 
Sbjct: 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189

Query: 120 KCNATNSQCKAY-LSAIIVYLYANDFKQAEKCYNDCSQVD-AFLRSDQNRCATKLISAYT 177
               +    K Y L   +  L A D   A +   +    D  F  S ++     LI A  
Sbjct: 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249

Query: 178 EGDVEEIKR-VAQSSAISNLD 197
           EGD E++     +      LD
Sbjct: 250 EGDSEQLSEHCKEFDNFMRLD 270

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 22/168 (13%)

Query: 7   DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKA---ARALEDAV 63
            A K  + A +    + +  E A+F+ K SE Y    ++  + D   +A    +  E   
Sbjct: 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180

Query: 64  P-------------------EDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKY 104
                               EDAI  +  A  M E + + Q+                +Y
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240

Query: 105 ADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYN 152
            DA  +  R     ++ N   S  +AY     ++       +A + ++
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.97
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.95
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.93
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.88
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.88
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.87
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.86
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.84
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.84
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.84
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.84
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.84
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.83
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.82
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.79
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.79
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.77
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.77
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.76
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.76
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.7
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.69
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.67
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.62
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.61
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.59
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.59
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.59
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.58
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.58
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.57
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.56
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.56
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.55
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.55
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.55
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.54
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.54
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.52
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.52
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.52
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.51
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.51
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.51
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.51
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.5
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.5
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.49
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.49
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.47
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.47
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.47
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.46
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.46
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.46
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.46
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.45
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.43
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.42
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.41
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.39
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.38
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.38
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.38
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.37
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.37
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.37
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.36
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.35
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.35
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.35
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.33
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.33
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.33
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.33
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.32
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.31
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.31
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.3
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.3
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.3
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.3
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.3
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.28
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.28
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.28
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.27
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.26
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.25
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.25
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.25
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.25
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.23
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.22
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.21
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.21
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.21
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.21
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.21
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.2
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.19
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.19
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.18
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.18
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.17
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.17
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.16
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.16
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.09
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.03
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.03
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.03
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.01
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.0
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.0
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.99
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.99
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.98
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.98
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.93
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.91
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.91
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.89
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.88
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.88
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.85
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.74
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.72
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.68
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.67
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.66
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.65
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.65
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.6
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.53
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.5
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.5
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.45
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.42
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.37
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.28
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.28
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.07
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.06
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.95
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.91
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.79
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	97.79
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.76
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.75
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.66
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.65
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.55
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.51
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.49
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.47
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.38
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.27
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.25
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	97.21
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.15
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.13
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	97.13
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	97.06
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.05
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.95
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.89
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	96.87
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.83
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	96.74
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.74
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.67
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.5
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.35
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	96.23
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.97
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.51
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	95.01
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.01
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.95
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.89
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.87
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.66
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.58
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.26
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.25
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.98
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.98
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.54
2yin_A	436	DOCK2, dedicator of cytokinesis protein 2; apoptos	92.47
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.41
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	92.05
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.46
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	91.33
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.17
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.6
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	90.53
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	89.38
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.12
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	85.63
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	85.57
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	85.4
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.05
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	84.52
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	84.29
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	84.24
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	83.95
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	83.59
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	83.2
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	83.01
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	83.0
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	82.55
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	82.22
2wm9_A	428	Dedicator of cytokinesis protein 9; polymorphism,	81.23
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	81.02

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.97  E-value=7.5e-30  Score=214.46  Aligned_cols=209  Identities=26%  Similarity=0.369  Sum_probs=193.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhc
Q 026767            2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      ++++..++.+|.++|.+|..+|++++|+.+|++|+.++...|++...+.++.++|.+|..|++++|+.+|++|+++++..
T Consensus        69 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~  148 (307)
T 2ifu_A           69 NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENE  148 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL  161 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~  161 (233)
                      ++....+.++.++|.++..+|+|++|+.+|++++.+..+.+..+..+.+++++|.+++.+|++++|+.+|++++..+.+.
T Consensus       149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~  228 (307)
T 2ifu_A          149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFS  228 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTST
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Confidence            99888889999999999999999999999999999998888777777889999999999999999999999999445677


Q ss_pred             CchHHHHHHHHHHHHhcCCHHHHHHHHhhc-ccccchHHHHHHhccCCCCc
Q 026767          162 RSDQNRCATKLISAYTEGDVEEIKRVAQSS-AISNLDHVIIKLARKLPTGD  211 (233)
Q Consensus       162 ~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l~~~~  211 (233)
                      .+.++..+..++.++..||.+.+.. +.++ .+..||+|..+++.+++.++
T Consensus       229 ~~~e~~~l~~l~~~~~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~l~~~~  278 (307)
T 2ifu_A          229 GSEDCAALEDLLQAYDEQDEEQLLR-VCRSPLVTYMDNDYAKLAISLKVPG  278 (307)
T ss_dssp             TSHHHHHHHHHHHHHHTTCHHHHHH-HTTSHHHHTSCHHHHHHHHTCCCC-
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHH-HHhCchhhhhhHHHHHHHHhCCCCC
Confidence            8899999999999999999999999 5557 88899999999999986653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.95  E-value=1.3e-26  Score=193.34  Aligned_cols=207  Identities=17%  Similarity=0.143  Sum_probs=162.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHH
Q 026767            2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLE   79 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~   79 (233)
                      ++++.+.+.+|.++|.+|..+|++++|+.+|++|+.++...|++...+.++.++|.+|. . |++++|+.+|++|+++++
T Consensus        70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~  149 (292)
T 1qqe_A           70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            35677788888888888888888888888888888888888888888888888888888 6 888888888888888888


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc-chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-C
Q 026767           80 EDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT-NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-V  157 (233)
Q Consensus        80 ~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~  157 (233)
                      ..++....+.++.++|.++..+|+|++|+.+|++++.+....+.. +....++.++|.|+..+|++++|+.+|++++. .
T Consensus       150 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            888777777788888888888888888888888888775544433 24455778888888888999999999988885 4


Q ss_pred             CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc-ccccchHHHHHHhccCC
Q 026767          158 DAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS-AISNLDHVIIKLARKLP  208 (233)
Q Consensus       158 ~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l~  208 (233)
                      +.+....++..+..|+.++..+|.+.+.+++..+ .+..+++|...+..+++
T Consensus       230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k  281 (292)
T 1qqe_A          230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK  281 (292)
T ss_dssp             --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence            5566677788888888888778888888888888 67778888776666543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.93  E-value=1.3e-23  Score=175.23  Aligned_cols=187  Identities=12%  Similarity=0.075  Sum_probs=172.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +..++..|..+|.+|...|++++|+.+|++|+.++.+.|++...+.++.++|.+|. .|++++|+.+|++|+++++..|+
T Consensus        33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~  112 (292)
T 1qqe_A           33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ  112 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            66788999999999999999999999999999999999999999999999999999 79999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-CC
Q 026767           84 EQMAFDLYRAATNVYIKL-EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-FL  161 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~~  161 (233)
                      ...++.++.++|.+|... |++++|+.+|++++.+....+.....+.++.++|.++..+|++++|+.+|++++.+.. ..
T Consensus       113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999996 9999999999999999988777777788899999999999999999999999995543 22


Q ss_pred             --CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          162 --RSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       162 --~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                        .......+..+|.++ ..||++.|..+++++
T Consensus       193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              235566888899988 799999999999999

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.92  E-value=3.5e-23  Score=173.67  Aligned_cols=189  Identities=13%  Similarity=0.061  Sum_probs=173.6

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      +++..++..|..+|.+|+..|++++|+.+|.+|+.++.+.|++..++.++.++|.+|. .|++++|+.+|++|+++++..
T Consensus        30 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~  109 (307)
T 2ifu_A           30 PDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN  109 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence            6788899999999999999999999999999999999999999999999999999999 799999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-C
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-F  160 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~  160 (233)
                      |+....+.++.++|.+|.. |++++|+.+|++++.++...++....+.++.++|.++..+|++++|+.+|++++.+.. .
T Consensus       110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            9999889999999999999 9999999999999999998888888889999999999999999999999999985432 2


Q ss_pred             -CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhcc
Q 026767          161 -LRSDQNRCATKLISAY-TEGDVEEIKRVAQSSA  192 (233)
Q Consensus       161 -~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~  192 (233)
                       ........+..++.++ ..||++.|..++++++
T Consensus       189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence             2334566778888887 7899999999999975

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.88  E-value=9.3e-21  Score=163.08  Aligned_cols=203  Identities=14%  Similarity=0.072  Sum_probs=183.5

Q ss_pred             CChHHHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCH
Q 026767            3 SSPWDAAKHMESAAALAKELHN-----------------WREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVP   64 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~-----------------~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~   64 (233)
                      ++....+.++.++|.+|...|+                 +++|+.+|++++.++...++....+.++.++|.++. .|++
T Consensus       160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  239 (411)
T 4a1s_A          160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF  239 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence            4566788899999999999999                 999999999999999999999999999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH
Q 026767           65 EDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF  144 (233)
Q Consensus        65 ~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~  144 (233)
                      ++|+.+|++++++.+..++....+.++.++|.++...|++++|+.+|++++.+....++....+.++..+|.++...|++
T Consensus       240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  319 (411)
T 4a1s_A          240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF  319 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999988888889999999999999999999999999999998888888899999999999999999


Q ss_pred             HHHHHHHHHhhcCCC--CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchHHHHHHhc
Q 026767          145 KQAEKCYNDCSQVDA--FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDHVIIKLAR  205 (233)
Q Consensus       145 ~~A~~~~~~al~~~~--~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~~~~l~~  205 (233)
                      ++|..+|++++.+..  ........++..++.++ ..|+.++|..+++++  ++..++........
T Consensus       320 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  385 (411)
T 4a1s_A          320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXXXXXX  385 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhhhh
Confidence            999999999985532  23456677899999998 899999999999999  78888775443333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.88  E-value=3e-20  Score=159.54  Aligned_cols=189  Identities=16%  Similarity=0.056  Sum_probs=148.3

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      ++....+.++.++|.+|...|++++|+.++++|+.++...++ ....+.++.++|.+|. .|++++|+.+|++|+++++.
T Consensus       137 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  216 (383)
T 3ulq_A          137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA  216 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            566778888899999998899999999999999999988887 7788888999999988 79999999999999999988


Q ss_pred             cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCC
Q 026767           81 DDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAF  160 (233)
Q Consensus        81 ~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~  160 (233)
                      .++....+.++.++|.+|..+|++++|+.+|++++.+++..++.+..+.++.++|.++..+|++++|..++++++.+...
T Consensus       217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            88888888888999999999999999999999999888887775666888889999999999999999999888754321


Q ss_pred             -CCchHHHHHHHHHHHH-hcCC---HHHHHHHHhhc
Q 026767          161 -LRSDQNRCATKLISAY-TEGD---VEEIKRVAQSS  191 (233)
Q Consensus       161 -~~~~e~~~l~~L~~a~-~~gd---~~~a~~~~~~~  191 (233)
                       ....-...+..|+..+ ..|+   ...+...+++.
T Consensus       297 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK  332 (383)
T ss_dssp             HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence             1111112245566666 5666   44444444333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.88  E-value=3e-20  Score=138.33  Aligned_cols=157  Identities=15%  Similarity=0.091  Sum_probs=148.3

Q ss_pred             CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767            1 MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLE   79 (233)
Q Consensus         1 ~~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~   79 (233)
                      +.+++...+.++..+|.+|...|++++|+.++++++.+....++....+.++.++|.++. .|++++|+.+|++++++++
T Consensus         1 ~~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A            1 GPGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999 8999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           80 EDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        80 ~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ..++....+.++.++|.++...|++++|+.++++++.+....++....+.++..+|.++...|++++|..++++++.+
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            999988888999999999999999999999999999999998888888999999999999999999999999999744

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.87  E-value=2e-20  Score=145.74  Aligned_cols=173  Identities=11%  Similarity=0.015  Sum_probs=155.8

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      +++...+.++..+|.+|...|++++|+.+|++++.+++..|+....+.++.++|.++. .|++++|+.++++++++++..
T Consensus        20 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   99 (203)
T 3gw4_A           20 AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL   99 (203)
T ss_dssp             TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            3455678899999999999999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             C-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-
Q 026767           82 D-KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-  159 (233)
Q Consensus        82 g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-  159 (233)
                      + +....+.++.++|.++...|++++|+.++++++.+.+..++....+.++.++|.++...|++++|..++++++.+.. 
T Consensus       100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          100 PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            9 55577789999999999999999999999999999999999888899999999999999999999999999985543 


Q ss_pred             -CCCchHHHHHHHHHHH
Q 026767          160 -FLRSDQNRCATKLISA  175 (233)
Q Consensus       160 -~~~~~e~~~l~~L~~a  175 (233)
                       .....++.++..++..
T Consensus       180 ~~~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          180 LEDSEAVNELMTRLNGL  196 (203)
T ss_dssp             TTCHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhcccch
Confidence             2345666677766654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.87  E-value=1.6e-19  Score=155.03  Aligned_cols=154  Identities=10%  Similarity=-0.035  Sum_probs=116.5

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      ++....+.++.++|.+|...|++++|+.++++|+.++...++ ....+.++.++|.++. .|++++|+++|++|+++++.
T Consensus       135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  214 (378)
T 3q15_A          135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD  214 (378)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            456667777777777777777777777777777777777766 4467777777777777 67777777777777777777


Q ss_pred             cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           81 DDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        81 ~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      .++....+.++.++|.+|..+|++++|+.+|++++.+++..+++.. +.++.++|.++..+|++++|..++++++.+
T Consensus       215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777776666655 677777777777777777777777777744

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.87  E-value=2.7e-20  Score=159.81  Aligned_cols=178  Identities=8%  Similarity=0.045  Sum_probs=166.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK-EQMAFDLY   91 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~-~~~~~~~l   91 (233)
                      ..|.++...|++++|+.+|++|+.++...++....+.++.++|.+|. .|++++|+.+|.+|+++++..++ ....+.++
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            48899999999999999999999999999999999999999999999 89999999999999999999987 77778899


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-CCC-chHHHHH
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-FLR-SDQNRCA  169 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~~~-~~e~~~l  169 (233)
                      .++|.++..+|+|++|+.+|++++.+..+.++....+.++.++|.+|..+|++++|+.+|++++.+.. ... +....++
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999996533 233 5668899


Q ss_pred             HHHHHHH-hcCCHHHHHHHHhhc
Q 026767          170 TKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       170 ~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..||.++ ..|+++.|...++++
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999 899999999999998

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.86  E-value=6.1e-20  Score=157.63  Aligned_cols=181  Identities=11%  Similarity=0.029  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC-hHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK-EQMAF   88 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~-~~~~~   88 (233)
                      .+...|..+...|++++|+.+|++|+.+....++....+.++.++|.+|. .|++++|+.++++|+++++..++ ....+
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            46677889999999999999999999999999999999999999999999 89999999999999999999886 55677


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-CCCchHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-FLRSDQNR  167 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~~~~~e~~  167 (233)
                      .++.++|.++..+|+|++|+++|++++.++++.++....+.++.++|.+|..+|++++|+.+|++++.+.. ...+....
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999986543 22333488


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          168 CATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       168 ~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++..|+.++ ..|+.+.|...++++
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~a  287 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEG  287 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999 899999999999998

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.84  E-value=3.1e-19  Score=152.30  Aligned_cols=194  Identities=15%  Similarity=0.164  Sum_probs=176.7

Q ss_pred             CChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h
Q 026767            3 SSPWDAAKHMESAAALAKELHN--------------------WREVADFYRKASELYNECGRSQPASDALAKAARALE-D   61 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~--------------------~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~   61 (233)
                      +++...+.++.++|.+|...|+                    +++|+.+|++++.++...++....+.++.++|.++. .
T Consensus       121 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  200 (406)
T 3sf4_A          121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL  200 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence            3456678899999999999999                    999999999999999999999999999999999999 8


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA  141 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~  141 (233)
                      |++++|+.+|++++++.+..++....+.++.++|.++...|++++|+.+|++++.+....++....+.++..+|.++...
T Consensus       201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  280 (406)
T 3sf4_A          201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL  280 (406)
T ss_dssp             TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988888899999999999999999999999999999999888888899999999999999


Q ss_pred             CCHHHHHHHHHHhhcCCC-C-CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccc
Q 026767          142 NDFKQAEKCYNDCSQVDA-F-LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNL  196 (233)
Q Consensus       142 gd~~~A~~~~~~al~~~~-~-~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~l  196 (233)
                      |++++|..+|++++.+.. . .......++..++.++ ..|+++.|..+++++  +...+
T Consensus       281 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  340 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999985532 2 3456677899999998 899999999999998  44444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.84  E-value=3.9e-19  Score=147.00  Aligned_cols=193  Identities=15%  Similarity=0.144  Sum_probs=174.4

Q ss_pred             CChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h
Q 026767            3 SSPWDAAKHMESAAALAKELHN--------------------WREVADFYRKASELYNECGRSQPASDALAKAARALE-D   61 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~--------------------~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~   61 (233)
                      +++...+.++.++|.+|...|+                    +++|+.++++++.+....++....+.++.++|.++. .
T Consensus       117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  196 (338)
T 3ro2_A          117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL  196 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            4566678899999999999999                    999999999999999999999999999999999999 8


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA  141 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~  141 (233)
                      |++++|+.++++++++.+..++....+.++.++|.++...|++++|+.++++++.+....++....+.++..+|.++...
T Consensus       197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  276 (338)
T 3ro2_A          197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL  276 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988888899999999999999999999999999999999888888899999999999999


Q ss_pred             CCHHHHHHHHHHhhcCCC--CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--cccc
Q 026767          142 NDFKQAEKCYNDCSQVDA--FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISN  195 (233)
Q Consensus       142 gd~~~A~~~~~~al~~~~--~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~  195 (233)
                      |++++|..++++++.+..  ........++..++.++ ..|+++.|..+++++  +...
T Consensus       277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            999999999999985432  23456677888999998 899999999999988  4443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.84  E-value=5.7e-19  Score=150.71  Aligned_cols=189  Identities=15%  Similarity=0.151  Sum_probs=148.4

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC------------------
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV------------------   63 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~------------------   63 (233)
                      ++....+.++.++|.+|...|++++|+.++++++.++...++....+.++.++|.++. .|+                  
T Consensus        81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~  160 (406)
T 3sf4_A           81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR  160 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence            4456667778888888888888888888888888888888887778888888888888 688                  


Q ss_pred             --HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh
Q 026767           64 --PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA  141 (233)
Q Consensus        64 --~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~  141 (233)
                        +++|+.+|++++.+++..++....+.++.++|.++...|++++|+.+|++++.+....++....+.++.++|.++...
T Consensus       161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  240 (406)
T 3sf4_A          161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL  240 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence              888888888888888888777777778888888888888888888888888888877777777777888888888888


Q ss_pred             CCHHHHHHHHHHhhcCCC-C-CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          142 NDFKQAEKCYNDCSQVDA-F-LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       142 gd~~~A~~~~~~al~~~~-~-~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      |++++|..+|++++.+.. . .......++..++.++ ..|+++.|...++++
T Consensus       241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  293 (406)
T 3sf4_A          241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  293 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            888888888888874422 2 2344566777888877 788888888888777

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.84  E-value=6.8e-19  Score=151.36  Aligned_cols=189  Identities=12%  Similarity=0.104  Sum_probs=151.6

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC-----------------H
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV-----------------P   64 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~-----------------~   64 (233)
                      ++....+.++..+|.+|...|++++|+.+|++++.++...++....+.++.++|.++. .|+                 +
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~  199 (411)
T 4a1s_A          120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL  199 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence            4456677788888888888888888888888888888888887788888888888888 688                 8


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH
Q 026767           65 EDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF  144 (233)
Q Consensus        65 ~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~  144 (233)
                      ++|+.+|++++++.+..++....+.++.++|.++...|++++|+.+|++++.+....++....+.++..+|.++...|++
T Consensus       200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  279 (411)
T 4a1s_A          200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF  279 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH
Confidence            88888888888888888777777778888888888888888888888888888877777777777888888888888888


Q ss_pred             HHHHHHHHHhhcCCC-C-CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          145 KQAEKCYNDCSQVDA-F-LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       145 ~~A~~~~~~al~~~~-~-~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++|..+|++++.+.. . .......++..++.++ ..|+++.|..+++++
T Consensus       280 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (411)
T 4a1s_A          280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH  329 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888888888874432 2 2345567788888888 788888888888877

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.84  E-value=1.4e-18  Score=140.76  Aligned_cols=188  Identities=13%  Similarity=0.088  Sum_probs=163.0

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNEC--GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~--g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      +....+.++..+|.+|...|++++|+.+|++++.++.+.  ++....+.++.++|.++. .|++++|+.+|++++.+++.
T Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999999999999999988  888889999999999999 89999999999999999987


Q ss_pred             cC--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc--cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           81 DD--KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC--NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        81 ~g--~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      .+  +......++.++|.++...|++++|+.+|++++.++...  ++.+..+.++.++|.++..+|++++|..+|++++.
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            63  234556799999999999999999999999999997765  33556678899999999999999999999999984


Q ss_pred             CC-C--------------------------------------------CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhh
Q 026767          157 VD-A--------------------------------------------FLRSDQNRCATKLISAY-TEGDVEEIKRVAQS  190 (233)
Q Consensus       157 ~~-~--------------------------------------------~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~  190 (233)
                      +. .                                            ........++..|+.++ ..|++++|...+++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  277 (283)
T 3edt_B          198 RAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC  277 (283)
T ss_dssp             HHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            31 0                                            02245566888999998 79999999999987


Q ss_pred             c
Q 026767          191 S  191 (233)
Q Consensus       191 ~  191 (233)
                      +
T Consensus       278 a  278 (283)
T 3edt_B          278 A  278 (283)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.83  E-value=1.7e-18  Score=143.10  Aligned_cols=187  Identities=16%  Similarity=0.154  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC--------------------
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV--------------------   63 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~--------------------   63 (233)
                      ....+.++..+|.+|...|++++|+.++++++.+....++....+.++.++|.++. .|+                    
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA  158 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence            33445555555555555555555555555555555555555555555555555555 455                    


Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCC
Q 026767           64 PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAND  143 (233)
Q Consensus        64 ~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd  143 (233)
                      +++|+.++++++.+.+..++....+.++.++|.++...|++++|+.++++++.+....++....+.++..+|.++...|+
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            55555555555555555555555555555555555555666666666665555555555555555555666666666666


Q ss_pred             HHHHHHHHHHhhcCCC-C-CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          144 FKQAEKCYNDCSQVDA-F-LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       144 ~~~A~~~~~~al~~~~-~-~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +++|..++++++.+.. . .......++..++.++ ..|+++.|...++++
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  289 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            6666666665553211 1 1233344555555555 556666666665555

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.82  E-value=3.5e-18  Score=140.64  Aligned_cols=188  Identities=14%  Similarity=0.130  Sum_probs=165.1

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNEC--GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~--g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      +....+.++..+|.+|...|++++|+.+|++++.++.+.  ++....+.++.++|.++. .|++++|+.+|++++++++.
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999999999999999999988  888889999999999999 89999999999999999987


Q ss_pred             c--CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc--cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           81 D--DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC--NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        81 ~--g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      .  ++......++.++|.++...|++++|+.+|++++.++.+.  ++.+....++..+|.++...|++++|..+|++++.
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6  5555667899999999999999999999999999998776  44666778899999999999999999999999984


Q ss_pred             CC-C--------------------------------------------CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhh
Q 026767          157 VD-A--------------------------------------------FLRSDQNRCATKLISAY-TEGDVEEIKRVAQS  190 (233)
Q Consensus       157 ~~-~--------------------------------------------~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~  190 (233)
                      .. .                                            ........++..++.++ ..|++++|...+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  303 (311)
T 3nf1_A          224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA  303 (311)
T ss_dssp             HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            21 0                                            02355677889999999 89999999999988


Q ss_pred             c
Q 026767          191 S  191 (233)
Q Consensus       191 ~  191 (233)
                      +
T Consensus       304 a  304 (311)
T 3nf1_A          304 A  304 (311)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.82  E-value=2.4e-18  Score=141.69  Aligned_cols=188  Identities=13%  Similarity=0.120  Sum_probs=167.4

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECG--RSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g--~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      +....+.++..+|.+|...|++++|+.+|++++.++...+  +....+.++..+|.++. .|++++|+.+|++++.+++.
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999887  67788999999999999 89999999999999999988


Q ss_pred             c--CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc--cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           81 D--DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC--NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        81 ~--g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      .  ++......++.++|.++...|++++|+.+|++++.+....  ++......++.++|.++...|++.+|+.+|++++.
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7  5555667899999999999999999999999999998776  66677788899999999999999999999999985


Q ss_pred             CCC----CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          157 VDA----FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       157 ~~~----~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +..    ........++..++.++ ..|++++|...++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            421    23456677899999988 899999999999988

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.79  E-value=2.1e-17  Score=128.40  Aligned_cols=173  Identities=10%  Similarity=-0.019  Sum_probs=148.1

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI   99 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~   99 (233)
                      ..|++++|...++..      .+++...+.++..+|.++. .|++++|+.+|++++++++..++....+.++.++|.++.
T Consensus         4 ~~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   77 (203)
T 3gw4_A            4 EAHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER   77 (203)
T ss_dssp             ---CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            468899998854433      4577788999999999999 899999999999999999999998888899999999999


Q ss_pred             HhccHHHHHHHHHHHHHHHhHccC-cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-C-CCchHHHHHHHHHHHH
Q 026767          100 KLEKYADAATFLLRWGLAADKCNA-TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-F-LRSDQNRCATKLISAY  176 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~-~~~~e~~~l~~L~~a~  176 (233)
                      ..|++++|+.++++++.+++..++ +...+.++.++|.++...|++++|..++++++.+.. . .....+.++..++.++
T Consensus        78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  157 (203)
T 3gw4_A           78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA  157 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            999999999999999999998884 447888999999999999999999999999985532 2 3345677889999988


Q ss_pred             -hcCCHHHHHHHHhhc--ccccchHH
Q 026767          177 -TEGDVEEIKRVAQSS--AISNLDHV  199 (233)
Q Consensus       177 -~~gd~~~a~~~~~~~--~~~~ld~~  199 (233)
                       ..|++++|..+++++  +++.+++.
T Consensus       158 ~~~g~~~~A~~~~~~al~~~~~~~~~  183 (203)
T 3gw4_A          158 QQEKNLLEAQQHWLRARDIFAELEDS  183 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence             899999999999999  66666543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.79  E-value=1e-17  Score=139.16  Aligned_cols=181  Identities=7%  Similarity=-0.056  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      .+.+.+..+...|++++|..++++++.......+....+..+..+|.++. .+++++|+.+|++|+++....++....+.
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            33333444444455555555555555444443443444444444555544 34555555555555554444444444444


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc-cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-C-CCchHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKC-NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-F-LRSDQN  166 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~-~~~~e~  166 (233)
                      +++++|.+|..+|+|++|+.+|++++.++... ++....+.++.++|.+|..+|++++|+.++++++.+.. . .....+
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            45555555555555555555555555544444 44444455555555555555555555555555543221 1 123334


Q ss_pred             HHHHHHHHHH-hcC-CHHHHHHHHhhc
Q 026767          167 RCATKLISAY-TEG-DVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~g-d~~~a~~~~~~~  191 (233)
                      .++..+|.++ ..| +.++|..+++++
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            4444555544 344 234555554444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.78  E-value=1.1e-16  Score=136.31  Aligned_cols=187  Identities=10%  Similarity=-0.006  Sum_probs=151.2

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      ++...+.++..+|.+|...|++++|..++++|+.+....|++...+.++.++|.++. .|++++|+.+|++++++.+..+
T Consensus        48 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~  127 (373)
T 1hz4_A           48 WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH  127 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence            344567788899999999999999999999999999999999889999999999999 7999999999999999999877


Q ss_pred             Ch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC-C
Q 026767           83 KE--QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD-A  159 (233)
Q Consensus        83 ~~--~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-~  159 (233)
                      ..  .....++.++|.++...|++++|..++++++.+....+... ...++..+|.++...|++++|..++++++.+. .
T Consensus       128 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN  206 (373)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             cccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            64  44566888999999999999999999999999887766554 55778899999999999999999999987442 2


Q ss_pred             CCCchHHHHH--HHHHHHH-hcCCHHHHHHHHhhc
Q 026767          160 FLRSDQNRCA--TKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       160 ~~~~~e~~~l--~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..........  ..++..+ ..|+.+.|...++++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          207 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  241 (373)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            2111111111  2333445 789999999998887

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.77  E-value=1.5e-17  Score=138.10  Aligned_cols=191  Identities=7%  Similarity=-0.081  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ....+.+.+..+...|++++|+.++.+++.......+.......+..+|.++. .|++++|+.+|++|+++.....+...
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            34556677788888999999999999999876544444456667778999988 79999999999999999888777777


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH-HhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC--CCCc
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC-KAYLSAIIVYLYANDFKQAEKCYNDCSQVDA--FLRS  163 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~--~~~~  163 (233)
                      .+.+++++|.+|..+|+|++|+.+|++++.++...+...... .++.++|.+|..+|++++|+.++++++.+..  ....
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence            778999999999999999999999999999988776554433 7899999999999999999999999985432  2334


Q ss_pred             hHHHHHHHHHHHH-hcCCHHHH-HHHHhhc--ccccchH
Q 026767          164 DQNRCATKLISAY-TEGDVEEI-KRVAQSS--AISNLDH  198 (233)
Q Consensus       164 ~e~~~l~~L~~a~-~~gd~~~a-~~~~~~~--~~~~ld~  198 (233)
                      ..+.++..+|.++ ..|+.+.| ..+++++  ++..++.
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~  272 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            5688899999998 79999999 8878887  5555544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.77  E-value=1.1e-16  Score=136.29  Aligned_cols=186  Identities=13%  Similarity=-0.006  Sum_probs=162.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +...+..+...|.++...|++++|+.++++++... ..+++...+.++..+|.++. .|++++|+.++++++.+.+..++
T Consensus        10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (373)
T 1hz4_A           10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   88 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence            45567788889999999999999999999999877 34455567788999999999 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc--chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-C
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT--NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-F  160 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~  160 (233)
                      ......++.++|.++...|++++|+.+|++++.+....+..  +..+.++.++|.++...|++++|..++++++.+.. .
T Consensus        89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A           89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            88888899999999999999999999999999999887765  56777889999999999999999999999985433 3


Q ss_pred             CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          161 LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       161 ~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ........+..++.++ ..|++++|...++++
T Consensus       169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3333556778889888 899999999999988

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.76  E-value=3.6e-17  Score=135.79  Aligned_cols=152  Identities=9%  Similarity=-0.056  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH-
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ-   85 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~-   85 (233)
                      .+..+..+|.++...|++++|+.+|++|+.+.....+....+.++.++|.+|. .|++++|+.+|++|+++++..++.. 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~  193 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence            44556778899999999999999999999998888888889999999999999 8999999999999999998876433 


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHH-HHHHHHhhcCCC
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQA-EKCYNDCSQVDA  159 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A-~~~~~~al~~~~  159 (233)
                      ....++.++|.+|..+|+|++|+.+|++++.+....++....+.++.++|.++..+|++++| ..+|++++.+..
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            33379999999999999999999999999999988788888899999999999999999999 888999985543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.76  E-value=6.4e-17  Score=130.92  Aligned_cols=172  Identities=14%  Similarity=0.123  Sum_probs=150.2

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 026767           20 KELHNWREVADFYRKASELYNECG--RSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED--DKEQMAFDLYRAA   94 (233)
Q Consensus        20 ~~~g~~~eA~~~~~~A~~l~~~~g--~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~--g~~~~~~~~l~~l   94 (233)
                      ...|++++|+.+|++|+.++.+..  +....+.++..+|.++. .|++++|+.+|++++++++..  ++......++.++
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            347899999999999999998864  55678999999999999 899999999999999999887  5556667899999


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhHccC--cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC----CCCCchHHHH
Q 026767           95 TNVYIKLEKYADAATFLLRWGLAADKCNA--TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD----AFLRSDQNRC  168 (233)
Q Consensus        95 g~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~----~~~~~~e~~~  168 (233)
                      |.++...|++++|+.+|++++.++++...  .+....++.++|.++...|++++|..+|++++.+.    .........+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999999877633  35677889999999999999999999999998552    1234566788


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          169 ATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +..++.++ ..|+.+.|...++++
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999998 899999999999888

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.76  E-value=2.6e-17  Score=136.68  Aligned_cols=151  Identities=11%  Similarity=-0.025  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-CChHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-DKEQM   86 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-g~~~~   86 (233)
                      +..+..+|.++...+++++|+.+|++|+.+....++....+.++.++|.+|. .|++++|+.+|++|+++++.. ++...
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            5566779999999999999999999999998888999899999999999999 899999999999999999999 78888


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC-CHHHHHHHHHHhhcCCC
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN-DFKQAEKCYNDCSQVDA  159 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-d~~~A~~~~~~al~~~~  159 (233)
                      .+.++.++|.+|..+|+|++|+.++++++.+..+.++....+.++.++|.++..+| ++++|.++|++++.+..
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            98999999999999999999999999999999999999999999999999999999 57999999999986553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.76  E-value=2.8e-17  Score=152.86  Aligned_cols=167  Identities=17%  Similarity=0.145  Sum_probs=143.3

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      ++...-+.+|.++|++|.++|++++|+.+|++|+++.     + .-+.++.++|.+|. .|++++|+.+|++|+++.+..
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-----P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~   76 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-----P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF   76 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            3445678999999999999999999999999999984     2 34678999999999 899999999999999986542


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL  161 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~  161 (233)
                            +.++.++|.++..+|++++|+++|++++++      .+..+.++.++|.++..+|++++|+.+|++++.+.   
T Consensus        77 ------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---  141 (723)
T 4gyw_A           77 ------ADAYSNMGNTLKEMQDVQGALQCYTRAIQI------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---  141 (723)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence                  468999999999999999999999999986      33446789999999999999999999999999543   


Q ss_pred             CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          162 RSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       162 ~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                       .....++..|+.++ ..|+.+.|.+.++++
T Consensus       142 -P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka  171 (723)
T 4gyw_A          142 -PDFPDAYCNLAHCLQIVCDWTDYDERMKKL  171 (723)
T ss_dssp             -SCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             -CCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence             12366888999988 799999998888776

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.76  E-value=6.8e-17  Score=119.91  Aligned_cols=150  Identities=16%  Similarity=0.149  Sum_probs=136.1

Q ss_pred             cCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767           42 CGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        42 ~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      .|++...+.++..+|.++. .|++++|+.+|++++++.+..++....+.++.++|.++...|++++|+.++++++.+...
T Consensus         2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            5788899999999999999 899999999999999999999998888899999999999999999999999999999999


Q ss_pred             ccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-C-CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-F-LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       121 ~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~-~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .++....+.++.++|.++...|++++|..++++++.+.. . .......++..++..+ ..|+++.|...++++
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            888888899999999999999999999999999985432 2 3456677889999988 899999999999987

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.72  E-value=7.1e-16  Score=118.55  Aligned_cols=163  Identities=14%  Similarity=0.143  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .+..|.++|.+|..+|++++|+.+|++|+++.     | .-..++.++|.++. .|++++|+..+.+++...+..     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-----   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-----P-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-----   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----
Confidence            35789999999999999999999999999883     2 24678999999999 899999999999998776542     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                       ..++..+|.++...++++.|...+.+++.+.      +....++..+|.++..+|++++|++.|++++.+.    +...
T Consensus        73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~~~  141 (184)
T 3vtx_A           73 -AEAYYILGSANFMIDEKQAAIDALQRAIALN------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK----PGFI  141 (184)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc----chhh
Confidence             3578889999999999999999999998762      2334578999999999999999999999998543    1235


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHhhcc
Q 026767          167 RCATKLISAY-TEGDVEEIKRVAQSSA  192 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~~~a~~~~~~~~  192 (233)
                      .+...+|.++ ..|+.++|..++++++
T Consensus       142 ~~~~~lg~~~~~~g~~~~A~~~~~~al  168 (184)
T 3vtx_A          142 RAYQSIGLAYEGKGLRDEAVKYFKKAL  168 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            6888999999 8999999999999983

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.5e-15  Score=131.41  Aligned_cols=185  Identities=9%  Similarity=0.041  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      ...+++.++|.+|...|++++|+++|.+++.++...++......+...+|.++. .|++++|+.++++++.+....++..
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            345678999999999999999999999999999999998888899999999999 8999999999999999999999877


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC-CC-CC-
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD-AF-LR-  162 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-~~-~~-  162 (233)
                      ..+.++.++|.+|...|+|.+|+.++++++..+...++....+.++..+|.+|...|++++|..++++++.+. .. +. 
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  212 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT  212 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence            7788999999999999999999999999999999988889999999999999999999999999999998443 22 22 


Q ss_pred             chHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ...+.+...+|..+ ..+++..|...+.++
T Consensus       213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          213 QTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34567788888888 789999999888777

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.7e-15  Score=119.24  Aligned_cols=175  Identities=16%  Similarity=0.093  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-C
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD-K   83 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-~   83 (233)
                      ...+..+..+|.++...|++++|+.+|++++.+.   .+    ..++..+|.++. .|++++|+.+|++++++.+..+ +
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   74 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD   74 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc
Confidence            3578899999999999999999999999999986   22    467899999999 7999999999999999999875 4


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH--------------------ccCcchHHHhHHHHHHHHHhhCC
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK--------------------CNATNSQCKAYLSAIIVYLYAND  143 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~a~~~~~lg~~~~~~gd  143 (233)
                      ......++..+|.++...|++++|+.+|++++.+...                    ....+....++..+|.++...|+
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            4445679999999999999999999999999984211                    11345566788999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          144 FKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       144 ~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +++|..+|++++....    ....++..++.++ ..|+++.|...++++
T Consensus       155 ~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAP----EDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             HHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999984431    1246778888888 789999999999988

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.70  E-value=7.2e-16  Score=122.71  Aligned_cols=160  Identities=14%  Similarity=0.113  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +.++.++|.++...|++++|+.+|++++.+.     | .-+.++.++|.++. .|++++|+.+|++++++.+..      
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------   72 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-----P-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------   72 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----S-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------
Confidence            4688999999999999999999999998763     2 34678999999999 899999999999999987642      


Q ss_pred             HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           88 FDLYRAATNVYIKL-----------EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        88 ~~~l~~lg~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      ..++.++|.++...           |++++|+..|++++.+      .+....++.++|.++..+|++++|+..|++++.
T Consensus        73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  146 (217)
T 2pl2_A           73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV------NPRYAPLHLQRGLVYALLGERDKAEASLKQALA  146 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            35789999999999           9999999999999976      234456789999999999999999999999986


Q ss_pred             CCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          157 VDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       157 ~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +.     ....+...++.++ ..|++++|...++++
T Consensus       147 ~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a  177 (217)
T 2pl2_A          147 LE-----DTPEIRSALAELYLSMGRLDEALAQYAKA  177 (217)
T ss_dssp             HC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55     1255677899988 899999999999998

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=4.1e-15  Score=118.98  Aligned_cols=173  Identities=13%  Similarity=0.067  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-----
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECG-RSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-----   81 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g-~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-----   81 (233)
                      ..++..+|.+|...|++++|+.++++++.+....+ +....+.++..+|.++. .|++++|+.+|++++.+.+..     
T Consensus        38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  117 (258)
T 3uq3_A           38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK  117 (258)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence            46788899999999999999999999999998765 55556899999999999 899999999999999953220     


Q ss_pred             ---------------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHH
Q 026767           82 ---------------DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQ  146 (233)
Q Consensus        82 ---------------g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~  146 (233)
                                     ........++..+|.++...|++++|+.+|++++.+..      ....++..+|.++...|++++
T Consensus       118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~  191 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP------EDARGYSNRAAALAKLMSFPE  191 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhCCHHH
Confidence                           01223346889999999999999999999999997632      234678999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          147 AEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       147 A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      |...|++++....    ....++..++.++ ..|+.+.|...++++
T Consensus       192 A~~~~~~al~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          192 AIADCNKAIEKDP----NFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999985431    2356788899988 899999999999988

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.69  E-value=1.1e-15  Score=121.56  Aligned_cols=160  Identities=15%  Similarity=0.015  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-----------CCHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-----------AVPEDAIQLYTDACI   76 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-----------g~~~~A~~~~~~Al~   76 (233)
                      +.++.++|.++...|++++|+.+|++++.+.     | .-..++.++|.++. .           |++++|+..|+++++
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVART-----P-RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            5678899999999999999999999999884     2 34678899999999 8           999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           77 MLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        77 ~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      +.+..      ..++.++|.++..+|++++|+..|++++.+.       ....++.++|.++..+|++++|+..|++++.
T Consensus       113 ~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  179 (217)
T 2pl2_A          113 VNPRY------APLHLQRGLVYALLGERDKAEASLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALE  179 (217)
T ss_dssp             HCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            86642      3578999999999999999999999999873       2345789999999999999999999999985


Q ss_pred             CCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          157 VDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       157 ~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..    +....+...++.++ ..|+.++|...+++.
T Consensus       180 ~~----P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          180 QA----PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HS----TTCHHHHHHHHHHHTC--------------
T ss_pred             hC----CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            42    12356778899988 799999999888765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.67  E-value=5.6e-15  Score=117.46  Aligned_cols=157  Identities=14%  Similarity=0.106  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      ..+.+.|.++...|++++|+.+|++++.+...     ....++.++|.++. .|++++|+.+|++++++.+.      -.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~   76 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-----QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LA   76 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-----CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hH
Confidence            78999999999999999999999999988531     12256777999999 89999999999999976553      24


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC-cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch--H
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA-TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD--Q  165 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~--e  165 (233)
                      .++..+|.++..+|++++|+.+|++++.+...... ....+.++..+|.++...|++++|+..|++++.+.    +.  .
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~  152 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT----SKKWK  152 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS----CHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC----CCccc
Confidence            68999999999999999999999999987433211 12234678999999999999999999999998652    23  4


Q ss_pred             HHHHHHHHHHH-hcCCH
Q 026767          166 NRCATKLISAY-TEGDV  181 (233)
Q Consensus       166 ~~~l~~L~~a~-~~gd~  181 (233)
                      ..++..++.++ ..|+.
T Consensus       153 ~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          153 TDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56777888877 56665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.64  E-value=1.4e-14  Score=122.73  Aligned_cols=167  Identities=11%  Similarity=-0.016  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-   86 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-   86 (233)
                      +.++..+|.+|...|++++|+.+|++++.+.     + ....++.++|.+|. .|++++|+.+|++++++.+....... 
T Consensus        99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  172 (365)
T 4eqf_A           99 AEAWQFLGITQAENENEQAAIVALQRCLELQ-----P-NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN  172 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhh
Confidence            4567777777777788888888888777763     1 22556777777777 67777777777777776554321110 


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           87 ---------------------------------------AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        87 ---------------------------------------~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                                                             ...++.++|.++...|++++|+.+|++++.+.      +..
T Consensus       173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~  246 (365)
T 4eqf_A          173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR------PED  246 (365)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTC
T ss_pred             hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCC
Confidence                                                   12456677777777777777777777777652      222


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..++.++|.++...|++++|+.+|++++.+.    +....++..++.++ ..|++++|...++++
T Consensus       247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  307 (365)
T 4eqf_A          247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQ----PGFIRSRYNLGISCINLGAYREAVSNFLTA  307 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4466777777777777777777777776432    11255666777776 677777777777776

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=4.7e-14  Score=110.44  Aligned_cols=167  Identities=10%  Similarity=-0.002  Sum_probs=140.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ....+.++..+|.++...|++++|+.+|++++....      ....++..+|.++. .|++++|+.+|++++.+.+..  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--   75 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS--   75 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--
Confidence            345678899999999999999999999999998742      22568899999999 799999999999999876532  


Q ss_pred             hHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC
Q 026767           84 EQMAFDLYRAATNVYIKL-EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR  162 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~  162 (233)
                          ..++..+|.++... |++++|+.+|++++.    .+..+....++..+|.++...|++++|+..|++++....   
T Consensus        76 ----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---  144 (225)
T 2vq2_A           76 ----AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---  144 (225)
T ss_dssp             ----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---
T ss_pred             ----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence                35788999999999 999999999999986    233445567889999999999999999999999984421   


Q ss_pred             chHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                       ....++..++.++ ..|+++.|...+++.
T Consensus       145 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~  173 (225)
T 2vq2_A          145 -QFPPAFKELARTKMLAGQLGDADYYFKKY  173 (225)
T ss_dssp             -TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             1256777888888 899999999999988

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.62  E-value=4.5e-14  Score=113.20  Aligned_cols=168  Identities=15%  Similarity=0.086  Sum_probs=138.5

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      ++...+.++..+|.+|...|++++|+.+|++++...     + ....++..+|.++. .|++++|+++|++++++.+.. 
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-  104 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----P-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN-  104 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----C-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-
Confidence            466668999999999999999999999999999873     1 23678889999999 799999999999999885532 


Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR  162 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~  162 (233)
                           ..++..+|.++...|++++|+.+|++++.    .+..+....++..+|.++...|++++|..+|++++....   
T Consensus       105 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---  172 (252)
T 2ho1_A          105 -----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---  172 (252)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---
T ss_pred             -----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---
Confidence                 35788999999999999999999999885    233455667889999999999999999999999884431   


Q ss_pred             chHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                       ....++..++.++ ..|+.+.|...+++.
T Consensus       173 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          173 -NQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             1255677888887 789999999999888

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.62  E-value=2.5e-14  Score=108.44  Aligned_cols=168  Identities=9%  Similarity=0.074  Sum_probs=140.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      ++++...+..+...|.++...|++++|+.++++++....      ....++..+|.++. .|++++|+.++++++++.+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   74 (186)
T 3as5_A            1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD   74 (186)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            356677889999999999999999999999999976532      23678899999999 89999999999999988543


Q ss_pred             cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCC
Q 026767           81 DDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAF  160 (233)
Q Consensus        81 ~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~  160 (233)
                      .      ..++..+|.++...|++++|+.++++++....      ....++..+|.++...|++++|..++++++.... 
T Consensus        75 ~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-  141 (186)
T 3as5_A           75 N------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-  141 (186)
T ss_dssp             C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred             C------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-
Confidence            2      35788999999999999999999999997632      2346789999999999999999999999985431 


Q ss_pred             CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          161 LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       161 ~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                         ....+...++.++ ..|+.+.|...++++
T Consensus       142 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          142 ---NEGKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               2256778889888 899999999999887

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.61  E-value=3.2e-14  Score=117.78  Aligned_cols=170  Identities=8%  Similarity=-0.028  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      .++..+|.+|...|++++|+.+|++++.+...      ...++..+|.++. .|++++|+.+|++++++.+..      .
T Consensus       126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~  193 (330)
T 3hym_B          126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED------P  193 (330)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------H
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC------h
Confidence            44566666666666666666666666665422      1234555777777 688888888888887765432      3


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc---chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT---NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQ  165 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e  165 (233)
                      .++..+|.++...|++++|+.+|++++.+....+..   .....++..+|.++...|++++|+.+|++++....    ..
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~  269 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP----QN  269 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc----cc
Confidence            578899999999999999999999999987665554   33356889999999999999999999999985431    23


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHhhc-cccc
Q 026767          166 NRCATKLISAY-TEGDVEEIKRVAQSS-AISN  195 (233)
Q Consensus       166 ~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~  195 (233)
                      ..++..++.++ ..|+++.|...++++ .+..
T Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (330)
T 3hym_B          270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRR  301 (330)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence            46778889988 799999999999999 4443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.61  E-value=2.9e-14  Score=120.74  Aligned_cols=171  Identities=12%  Similarity=0.056  Sum_probs=139.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +...+..+...|.++...|++++|+.+|++++.+..      ..+.++..+|.++. .|++++|+.+|++++++.+..  
T Consensus        61 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--  132 (365)
T 4eqf_A           61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP------GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN--  132 (365)
T ss_dssp             TTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             cccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--
Confidence            334456688999999999999999999999998742      23778999999999 899999999999999986532  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc--------------------------------------
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN--------------------------------------  125 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------------------  125 (233)
                          ..++.++|.++..+|++++|+.+|++++.+........                                      
T Consensus       133 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  208 (365)
T 4eqf_A          133 ----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG  208 (365)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC
T ss_pred             ----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence                35789999999999999999999999987644322111                                      


Q ss_pred             h--HHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          126 S--QCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       126 ~--~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .  ...++..+|.++...|++++|+.+|++++....    ....++..++.++ ..|+++.|...++++
T Consensus       209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP----EDYSLWNRLGATLANGDRSEEAVEAYTRA  273 (365)
T ss_dssp             SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            1  356788999999999999999999999884421    2256788899888 789999999999988

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.61  E-value=3.5e-14  Score=103.67  Aligned_cols=107  Identities=17%  Similarity=0.090  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD-   82 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-   82 (233)
                      ..+.|.++.++|+.+...|++++|+.+|++|+++.     | .-+.++.++|.+|. .|++++|+++|++|+++.+... 
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-----P-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            45778889999999999999999999999998873     2 23678889999999 7999999999999999988765 


Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      .....+.++.++|.++..+|+|++|+++|++++..
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45556678899999999999999999999998865

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=3.1e-13  Score=108.27  Aligned_cols=163  Identities=15%  Similarity=0.054  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ..++..+|.+|...|++++|+.+|++++.+..      ....++..+|.++. .|++++|+.+|++++.    .+.....
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~  140 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDS------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPER  140 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCccc
Confidence            56788999999999999999999999998742      23578899999999 7999999999999997    2222223


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNR  167 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~  167 (233)
                      ..++..+|.++...|++++|+.+|++++...      +....++..+|.++...|++++|...|++++....    ....
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~  210 (252)
T 2ho1_A          141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG----QNAR  210 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC----CCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHH
Confidence            4688999999999999999999999999763      22356789999999999999999999999985432    1245


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          168 CATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       168 ~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .+..++..+ ..|+.+.|...+++.
T Consensus       211 ~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          211 SLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            667778877 799999999999988

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.59  E-value=1.7e-13  Score=108.75  Aligned_cols=161  Identities=18%  Similarity=0.152  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ..++..+|.+|...|++++|+.+|++++.+..      ....++..+|.++. .|++++|+.+|++++++.+..      
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------  124 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDS------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------  124 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------
Confidence            56777888888888888888888888887632      23567788888888 788888888888888876532      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNR  167 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~  167 (233)
                      ..++..+|.++...|++++|+.+|++++....      ....++..+|.++...|++++|+..|++++....    ....
T Consensus       125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~  194 (243)
T 2q7f_A          125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP----GHAD  194 (243)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT----TCHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHH
Confidence            24677888888888888888888888886532      2244678888888888888888888888874321    1245


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          168 CATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       168 ~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++..++.++ ..|+.+.|...++++
T Consensus       195 ~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          195 AFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             HHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            677788877 788888888888887

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.59  E-value=1.1e-13  Score=112.47  Aligned_cols=174  Identities=11%  Similarity=-0.007  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .+..+...|..+...|++++|+.+|++++..+   .+......++..+|.++. .|++++|+.+|++++.+++.....  
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--   88 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV--   88 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh--
Confidence            45778899999999999999999999998865   223345788999999999 899999999999999998765432  


Q ss_pred             HHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHhHccCcchHHHhH--------------HHHHHHHHhhCCH
Q 026767           87 AFDLYRAATNVYIK--------LEKYADAATFLLRWGLAADKCNATNSQCKAY--------------LSAIIVYLYANDF  144 (233)
Q Consensus        87 ~~~~l~~lg~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~--------------~~lg~~~~~~gd~  144 (233)
                       ..++..+|.++..        .|++++|+..|++++......   .....++              +.+|.+|...|++
T Consensus        89 -~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  164 (261)
T 3qky_A           89 -PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH---ELVDDATQKIRELRAKLARKQYEAARLYERRELY  164 (261)
T ss_dssp             -HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             -HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence             3579999999999        999999999999999865332   2222233              8899999999999


Q ss_pred             HHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-hc----------CCHHHHHHHHhhcc
Q 026767          145 KQAEKCYNDCSQV-DAFLRSDQNRCATKLISAY-TE----------GDVEEIKRVAQSSA  192 (233)
Q Consensus       145 ~~A~~~~~~al~~-~~~~~~~e~~~l~~L~~a~-~~----------gd~~~a~~~~~~~~  192 (233)
                      .+|+..|++++.. +..  .....++..++.++ ..          |++++|...+++.+
T Consensus       165 ~~A~~~~~~~l~~~p~~--~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~  222 (261)
T 3qky_A          165 EAAAVTYEAVFDAYPDT--PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL  222 (261)
T ss_dssp             HHHHHHHHHHHHHCTTS--TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence            9999999999843 322  22455777888877 45          88888988888873

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.59  E-value=9.2e-14  Score=117.16  Aligned_cols=167  Identities=11%  Similarity=0.003  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-   86 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-   86 (233)
                      ..++..+|.+|...|++++|+.+|++++.+..      ....++..+|.++. .|++++|+.+|++++.+.+....... 
T Consensus        98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  171 (368)
T 1fch_A           98 MEAWQYLGTTQAENEQELLAISALRRCLELKP------DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP  171 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            34566666777777777777777777766531      12456666777777 67777777777766655433221110 


Q ss_pred             --------------------------------------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767           87 --------------------------------------------AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN  122 (233)
Q Consensus        87 --------------------------------------------~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  122 (233)
                                                                  ...++.++|.++...|++++|+.+|++++.+.    
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----  247 (368)
T 1fch_A          172 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR----  247 (368)
T ss_dssp             --------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence                                                        13466777778888888888888888777652    


Q ss_pred             CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          123 ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       123 ~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                        +....++..+|.++...|++++|+..|++++.+.    +....++..++.++ ..|+++.|...++++
T Consensus       248 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  311 (368)
T 1fch_A          248 --PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ----PGYIRSRYNLGISCINLGAHREAVEHFLEA  311 (368)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              2224567778888888888888888888777432    12245667777777 678888888877777

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1e-13  Score=119.83  Aligned_cols=176  Identities=7%  Similarity=-0.038  Sum_probs=155.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCc-----------hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767           16 AALAKELHNWREVADFYRKASELYNECGRS-----------QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus        16 g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~-----------~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      |..+...|++++|++.|.+++......++.           .....++.++|.+|. .|++++|+++|.+++.++...++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            444555899999999999999987766653           234467999999999 89999999999999999999998


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CC-CC
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DA-FL  161 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~-~~  161 (233)
                      ......+...+|.++...|++++|+.++++++.+....+.....++++.++|.++...|+|.+|...+++++.. .. ..
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999843 33 24


Q ss_pred             CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          162 RSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       162 ~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ......++..+++.| ..||+++|...++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  201 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA  201 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            567788999999999 899999999999887

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.58  E-value=7.4e-14  Score=113.05  Aligned_cols=163  Identities=9%  Similarity=-0.057  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      ..+...|.++...|++++|+.+|++++.....      ...++..+|.++. .|++++|+.+|+++++ ..  ++....+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~   74 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN------SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKS   74 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHH
Confidence            45678899999999999999999999876432      2346888999999 7999999999999998 22  3333345


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC  168 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~  168 (233)
                      .++..+|.++...|++++|+.+|++++.+..      ....++..+|.++...|++++|+.+|++++...    +....+
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~  144 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDT------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT----TTDPKV  144 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS----CCCHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC----CCcHHH
Confidence            6789999999999999999999999998632      234578999999999999999999999998652    233567


Q ss_pred             HHHHH-HHHhcCCHHHHHHHHhhc
Q 026767          169 ATKLI-SAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~-~a~~~gd~~~a~~~~~~~  191 (233)
                      +..++ ..+..++++.|...++++
T Consensus       145 ~~~l~~~~~~~~~~~~A~~~~~~a  168 (272)
T 3u4t_A          145 FYELGQAYYYNKEYVKADSSFVKV  168 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888 677778999999999888

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=1.5e-13  Score=107.68  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      ..+..+.+.|.++...|++++|+.+|++++       ++  .+.++.++|.++. .|++++|+.+|++++.+.+..    
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----   70 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ-------DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----   70 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS-------SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence            456678899999999999999999999984       22  3578999999999 899999999999999986432    


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc----------CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN----------ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                        ..++.++|.++..+|++++|+.+|++++.+.....          ..+....++.++|.++...|++++|..+|++++
T Consensus        71 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           71 --AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence              35899999999999999999999999998765443          344566889999999999999999999999998


Q ss_pred             cCC
Q 026767          156 QVD  158 (233)
Q Consensus       156 ~~~  158 (233)
                      .+.
T Consensus       149 ~~~  151 (213)
T 1hh8_A          149 SMK  151 (213)
T ss_dssp             TTC
T ss_pred             HcC
Confidence            554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.57  E-value=3.5e-14  Score=125.96  Aligned_cols=165  Identities=13%  Similarity=-0.002  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            7 DAAKHMESAAALAKELHNW-REVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~-~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ..+..+...|.+|...|++ ++|+.+|++|+.+.     + ..+.++.++|.+|. .|++++|+++|++|+++.+.    
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----  169 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----P-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----  169 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----
Confidence            3467899999999999999 99999999999884     2 34678999999999 89999999999999988532    


Q ss_pred             HHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh--------CCHHHH
Q 026767           85 QMAFDLYRAATNVYIKL---------EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA--------NDFKQA  147 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~--------gd~~~A  147 (233)
                         ..++.++|.++..+         |++++|+.+|++++.+.      +....++.++|.++...        |++++|
T Consensus       170 ---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          170 ---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD------VLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             ---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence               26899999999999         99999999999999863      33456789999999999        999999


Q ss_pred             HHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          148 EKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       148 ~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +.+|++++.+... ......++..++.++ ..|++++|...++++
T Consensus       241 ~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  284 (474)
T 4abn_A          241 LSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEESYGEALEGFSQA  284 (474)
T ss_dssp             HHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999854210 114577888999988 799999999999988

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.56  E-value=9.1e-14  Score=117.21  Aligned_cols=171  Identities=9%  Similarity=0.018  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCch------------------------------------------
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQ------------------------------------------   46 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~------------------------------------------   46 (233)
                      ..++..+|.+|...|++++|+.+|++++.+........                                          
T Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  211 (368)
T 1fch_A          132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD  211 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC
Confidence            45677888888888888888888888776432211111                                          


Q ss_pred             -H--HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767           47 -P--ASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN  122 (233)
Q Consensus        47 -~--~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  122 (233)
                       .  .+.++.++|.++. .|++++|+.+|++++.+.+..      ..++.++|.++...|++++|+.+|++++.+.    
T Consensus       212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----  281 (368)
T 1fch_A          212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQ----  281 (368)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence             1  3678889999999 799999999999999985532      3588999999999999999999999999762    


Q ss_pred             CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCC-C-----CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          123 ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAF-L-----RSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       123 ~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~-~-----~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                        +....++..+|.++...|++.+|..+|++++.+ +.. .     ......+...|+.++ ..|+.+.|...+++.
T Consensus       282 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          282 --PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence              234567899999999999999999999999844 222 1     122267888999999 799999999998876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.56  E-value=2.7e-13  Score=115.78  Aligned_cols=125  Identities=17%  Similarity=0.144  Sum_probs=70.1

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK  129 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~  129 (233)
                      ++.++|.++. .|++++|+..|++++.+.+..      ..++.++|.++...|++++|+.+|++++.+      .+....
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~  272 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL------QPHFPD  272 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------CSSCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Confidence            3444444444 344444444444444433211      235566666666666666666666666643      122234


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++.++|.++...|++++|+..|++++...    +....++..++.++ ..|+.++|...++++
T Consensus       273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  331 (388)
T 1w3b_A          273 AYCNLANALKEKGSVAEAEDCYNTALRLC----PTHADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56667777777777777777777666332    11234556666666 567777777777666

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.55  E-value=5.4e-14  Score=122.92  Aligned_cols=177  Identities=11%  Similarity=-0.047  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGR---SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~---~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      ....+..|+.+|.+|..+|++++|+++|++|++++.....   ....+.++.|+|.+|. .|++++|+.+|++++++.+.
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3445788999999999999999999999999999887543   2346788999999999 89999999999999999997


Q ss_pred             cCCh--HHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh----------------
Q 026767           81 DDKE--QMAFDLYRAATNVYIKL--EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY----------------  140 (233)
Q Consensus        81 ~g~~--~~~~~~l~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----------------  140 (233)
                      ....  ...+.++.++|.++...  ++|++|+++|++++.+...      ...++.+++.++..                
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~------~~~~~~~~~~~~~~l~~~~~~~~al~~~~~  200 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK------NPEFTSGLAIASYRLDNWPPSQNAIDPLRQ  200 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            6532  12346788888877765  4799999999999875211      11223333333222                


Q ss_pred             -------------------------hCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          141 -------------------------ANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       141 -------------------------~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                                               .|++.+|.+++++++...    +....++..+|..+ ..|+++.|...++++
T Consensus       201 al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  273 (472)
T 4g1t_A          201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA----PGVTDVLRSAAKFYRRKDEPDKAIELLKKA  273 (472)
T ss_dssp             HHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence                                     234444555555444221    12345667788877 788888888888888

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.55  E-value=1.2e-13  Score=100.74  Aligned_cols=106  Identities=18%  Similarity=0.126  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc-C
Q 026767           46 QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN-A  123 (233)
Q Consensus        46 ~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~  123 (233)
                      ...|.++.++|.++. .|++++|+.+|++|+++.+..      ..++.++|.+|..+|+|++|+..|++++.+..... .
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            467889999999999 899999999999999986542      35899999999999999999999999999876653 3


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ....+.++.++|.++..+|++.+|+++|++++..
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3556789999999999999999999999999854

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=3.9e-13  Score=114.75  Aligned_cols=167  Identities=14%  Similarity=0.063  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCchHH--------------HHHHHHHHHHhh
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASEL--------------YNECGRSQPA--------------SDALAKAARALE   60 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g~~~~~--------------a~~l~~lg~~~~   60 (233)
                      +.++.++|.+|...|++++|+.+|++++.+              +...|+...+              ..++.++|.++.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            566777777777777777777777777653              3334444333              456778899999


Q ss_pred             -hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           61 -DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        61 -~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                       .|++++|+.+|++++++.+..      ..++.++|.++...|++++|+.+|++++.+.      +....++.++|.++.
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTHADSLNNLANIKR  316 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHH
Confidence             799999999999999875432      2478999999999999999999999999763      233567899999999


Q ss_pred             hhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          140 YANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       140 ~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..|++++|...|++++...    +....+...++.++ ..|++++|...++++
T Consensus       317 ~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  365 (388)
T 1w3b_A          317 EQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSC----TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999998543    12356788899988 899999999999988

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.55  E-value=1.2e-13  Score=122.54  Aligned_cols=163  Identities=10%  Similarity=0.018  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---------CCHHHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D---------AVPEDAIQLYTDACIML   78 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---------g~~~~A~~~~~~Al~~~   78 (233)
                      +.++.++|.+|...|++++|+.+|++|+.+.     +.  ..++.++|.++. .         |++++|+.+|++|+++.
T Consensus       137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  209 (474)
T 4abn_A          137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----KN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD  209 (474)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----CC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence            5689999999999999999999999999873     44  489999999999 8         99999999999999986


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHH
Q 026767           79 EEDDKEQMAFDLYRAATNVYIKL--------EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKC  150 (233)
Q Consensus        79 ~~~g~~~~~~~~l~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~  150 (233)
                      +..      ..++.++|.++..+        |++++|+.+|++++.+..   .......++.++|.++...|++++|+..
T Consensus       210 p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~lg~~~~~~g~~~~A~~~  280 (474)
T 4abn_A          210 VLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR---KASSNPDLHLNRATLHKYEESYGEALEG  280 (474)
T ss_dssp             TTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG---GGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC---CcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            643      35889999999999        999999999999998721   1125567899999999999999999999


Q ss_pred             HHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          151 YNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       151 ~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      |++++.+...    ...+...++.++ ..|+.+.|.....+.
T Consensus       281 ~~~al~l~p~----~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          281 FSQAAALDPA----WPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHCTT----CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999854311    245667777777 567666666554433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.55  E-value=1.8e-12  Score=101.34  Aligned_cols=164  Identities=11%  Similarity=0.019  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ..++..+|.+|...|++++|+.+|++++.+..      ....++..+|.++. . |++++|+.+|+++++    .+....
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~  111 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------DSAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPT  111 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSC
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcc
Confidence            46788899999999999999999999998742      23567899999999 9 999999999999998    222222


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                      ...++..+|.++...|++++|+.+|++++...      +....++..+|.++...|++.+|...+++++.....   ...
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~  182 (225)
T 2vq2_A          112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV---LQA  182 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---CCH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CCH
Confidence            34688999999999999999999999998763      223567899999999999999999999999844210   112


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          167 RCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..+..++..+ ..|+.+.+..+.+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          183 DDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3345555665 789999999888877

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.54  E-value=1.5e-14  Score=108.62  Aligned_cols=126  Identities=10%  Similarity=-0.081  Sum_probs=102.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYR   92 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~   92 (233)
                      .+|.+++..|++++|+..+++++...      ......+..+|.+|. .|++++|+++|++++++.+..      ..++.
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~   69 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSP------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHR   69 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSH------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence            47889999999999999999987654      345667788999999 799999999999999986643      36899


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHH-HHHhhcC
Q 026767           93 AATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKC-YNDCSQV  157 (233)
Q Consensus        93 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~-~~~al~~  157 (233)
                      ++|.++..+|++++|+.+|++++++      .+....+++++|.++...|++.+|.+. +++++.+
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l  129 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVEL------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL  129 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            9999999999999999999999976      233456889999999999999887765 5888854

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.54  E-value=4.5e-13  Score=119.35  Aligned_cols=147  Identities=11%  Similarity=-0.063  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-C-C
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNE-CGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-D-K   83 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~-~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-g-~   83 (233)
                      +....+.+..++.+|++++|+.+|++++++..+ .|. ....+.+++++|.+|. +|++++|+.+|++++++++.. | +
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            334444556678899999999999999999976 444 4578999999999999 899999999999999999874 3 4


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc-c-CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC-N-ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ....+.+++++|.+|..+|+|++|+.+|++|+.+.+.. | +.+..+..+..++.++..++.|.+|+..|.++.
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556799999999999999999999999999998875 3 445667777999999999999999999998874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.54  E-value=7.9e-14  Score=129.69  Aligned_cols=130  Identities=14%  Similarity=0.065  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +.++.++|.+|..+|++++|+.+|++|+++.     + .-+.++.++|.++. .|++++|+++|++|+++.+..      
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----P-~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------  110 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----P-TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------  110 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence            5689999999999999999999999999983     2 34778999999999 899999999999999986542      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      +.++.++|.+|..+|++++|+.+|++++++      .+....++.++|.++..+|++.+|.+.+++++.
T Consensus       111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          111 ADAHSNLASIHKDSGNIPEAIASYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            368999999999999999999999999986      234466899999999999999999999999873

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.53  E-value=7.4e-13  Score=104.89  Aligned_cols=160  Identities=15%  Similarity=0.059  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhC----CHHHHHHHHHHHHHHHHhcC
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDA----VPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g----~~~~A~~~~~~Al~~~~~~g   82 (233)
                      +-+.++.++|.+|...+++++|+.+|++|++.    |+    +.++.++|.+|..+    ++++|+.+|++|++.    |
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~----g   83 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIRNPQQADYPQARQLAEKAVEA----G   83 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT----T
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC----C
Confidence            34678999999999999999999999999763    43    57789999999965    899999999999652    3


Q ss_pred             ChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh----hCCHHHHHHHHHHh
Q 026767           83 KEQMAFDLYRAATNVYIK----LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY----ANDFKQAEKCYNDC  154 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~gd~~~A~~~~~~a  154 (233)
                      +    ..++.++|.+|..    .+++++|+.+|+++++.    +.......++++||.+|..    .+|+.+|+.+|+++
T Consensus        84 ~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           84 S----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             C----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             C----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            3    3578999999998    88999999999999843    3322346789999999999    88999999999999


Q ss_pred             hcCCCCCCchHHHHHHHHHHHHhc--C-----CHHHHHHHHhhc
Q 026767          155 SQVDAFLRSDQNRCATKLISAYTE--G-----DVEEIKRVAQSS  191 (233)
Q Consensus       155 l~~~~~~~~~e~~~l~~L~~a~~~--g-----d~~~a~~~~~~~  191 (233)
                      +..+..     ......|+..|..  |     |.++|...++.+
T Consensus       156 ~~~~~~-----~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          156 SSLSRT-----GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHTSCT-----THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCC-----HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            865321     2367788988843  4     899999999988

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.52  E-value=1e-12  Score=106.13  Aligned_cols=168  Identities=12%  Similarity=-0.039  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +...+.++..+|.+|...|++++|+.+|++++.+.     + ....++.++|.++. .|++++|+.+|++++++.+..  
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--  110 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----P-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--  110 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc--
Confidence            45678999999999999999999999999999973     2 24568999999999 799999999999999986543  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCC--
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAF--  160 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~--  160 (233)
                          ..++..+|.++...|++++|+.+|++++.+....    .  .....++ +....|++.+|...+++++.. +..  
T Consensus       111 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~--~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (275)
T 1xnf_A          111 ----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND----P--FRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQW  179 (275)
T ss_dssp             ----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H--HHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred             ----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----h--HHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchH
Confidence                2588999999999999999999999999763221    1  1122222 235557777777777665521 110  


Q ss_pred             ------------------------------CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          161 ------------------------------LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       161 ------------------------------~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                                                    .......++..++.++ ..|+.+.|...++++
T Consensus       180 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  241 (275)
T 1xnf_A          180 GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA  241 (275)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                          0011256777888888 789999999999988

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.52  E-value=5.7e-13  Score=102.13  Aligned_cols=131  Identities=14%  Similarity=0.000  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +.++.++|.+|...|++++|+.++.++.....      ....++..+|.++. .++++.|+..+.+++.+.+..      
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------  106 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------  106 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------
Confidence            46788999999999999999999999987642      23567888999999 799999999999999886643      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ..++..+|.++..+|++++|+.+|++++.+      .+....++.++|.++..+|++++|+++|++++.+
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHh------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            257889999999999999999999999976      2344668999999999999999999999999854

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.52  E-value=1.8e-12  Score=102.18  Aligned_cols=161  Identities=13%  Similarity=0.052  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHH----------------HHHHhh-hCCHHHHHHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAK----------------AARALE-DAVPEDAIQLY   71 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~----------------lg~~~~-~g~~~~A~~~~   71 (233)
                      +..+...|..+...|++++|+.+|++++.+..      .-+.++..                +|.++. .|++++|+.+|
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            45677788899999999999999999998742      22334444                999999 89999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCC--HHHHHH
Q 026767           72 TDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAND--FKQAEK  149 (233)
Q Consensus        72 ~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd--~~~A~~  149 (233)
                      ++++++.+..      ..++.++|.++...|++++|+.+|++++.+      .+....+++++|.++...|+  ...+..
T Consensus        78 ~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~~~~~~~  145 (208)
T 3urz_A           78 KELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQL------EADNLAANIFLGNYYYLTAEQEKKKLET  145 (208)
T ss_dssp             HHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            9999987653      368999999999999999999999999986      23445688999999987764  445566


Q ss_pred             HHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhcc
Q 026767          150 CYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSSA  192 (233)
Q Consensus       150 ~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~  192 (233)
                      .+.+++...     ........+|.++ ..|++++|..++++++
T Consensus       146 ~~~~~~~~~-----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al  184 (208)
T 3urz_A          146 DYKKLSSPT-----KMQYARYRDGLSKLFTTRYEKARNSLQKVI  184 (208)
T ss_dssp             HHC---CCC-----HHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             HHHHHhCCC-----chhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            666654321     2222344456555 6899999999999994

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.52  E-value=7.8e-13  Score=118.70  Aligned_cols=173  Identities=10%  Similarity=-0.014  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------HHcCCchHH--------------HHHHHHHHHHhh
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELY--------------NECGRSQPA--------------SDALAKAARALE   60 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~--------------~~~g~~~~~--------------a~~l~~lg~~~~   60 (233)
                      ...+..+|.+|...|++++|+.+|++++.+.              ...|+...+              ..++..+|.+|.
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4566667777777777777777777766531              111111111              122333444444


Q ss_pred             -hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch-HHHhHHHHHHHH
Q 026767           61 -DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS-QCKAYLSAIIVY  138 (233)
Q Consensus        61 -~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~lg~~~  138 (233)
                       .|++++|+++|++++++.+.  +    ..++..+|.++.+.|++++|+.+|++++.+..+.+..+. ...++..+|.++
T Consensus       453 ~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~  526 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYALFQY--D----PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY  526 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence             35555555555555443221  0    134556666666666666666666666655544333332 245566666666


Q ss_pred             HhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          139 LYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       139 ~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ...|++++|++.|++++...    +....+...|+.++ ..|++++|...+++.
T Consensus       527 ~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          527 RKLKMYDAAIDALNQGLLLS----TNDANVHTAIALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            66666666666666665322    11234555566655 566666666666665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.52  E-value=2.3e-12  Score=102.69  Aligned_cols=175  Identities=10%  Similarity=-0.047  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..+.+.|..+...|++++|+..|++++..+.   +......++..+|.++. .|++++|+..|+++++.++.....   
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~---   77 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---   77 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH---
Confidence            45678889999999999999999999998653   22335678999999999 899999999999999998875532   


Q ss_pred             HHHHHHHHHHHHH------------------hccHHHHHHHHHHHHHHHhHccCcc-----------hHHHhHHHHHHHH
Q 026767           88 FDLYRAATNVYIK------------------LEKYADAATFLLRWGLAADKCNATN-----------SQCKAYLSAIIVY  138 (233)
Q Consensus        88 ~~~l~~lg~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~-----------~~a~~~~~lg~~~  138 (233)
                      ..++..+|.++..                  .|++++|+..|++++..+.......           ..+.....+|.++
T Consensus        78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~  157 (225)
T 2yhc_A           78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYY  157 (225)
T ss_dssp             HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777777765                  6899999999999987543322111           0112236789999


Q ss_pred             HhhCCHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          139 LYANDFKQAEKCYNDCSQV-DAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       139 ~~~gd~~~A~~~~~~al~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ...|++.+|+..|++++.. +..  ..-..++..++.++ ..|+.+.|...++..
T Consensus       158 ~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          158 TERGAWVAVVNRVEGMLRDYPDT--QATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHHHCcCC--CccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            9999999999999999843 422  22346788999999 899999999988765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.51  E-value=2.1e-13  Score=110.34  Aligned_cols=185  Identities=12%  Similarity=0.020  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      .++..+|.+|...|++++|+.++++++..   ..++...+.++..+|.++. .|++++|+.+|++++++.+...      
T Consensus        38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------  108 (272)
T 3u4t_A           38 YIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL------  108 (272)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------
Confidence            35667777777777788888777777772   2555556677777777777 6777777777777777655422      


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHH---------------------------------
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAI---------------------------------  135 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg---------------------------------  135 (233)
                      .++.++|.++...|++++|+.+|++++.+      .+....++..+|                                 
T Consensus       109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  182 (272)
T 3u4t_A          109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRP------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR  182 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHGGGCCS------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhc------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence            36667777777777777777777766543      122233444444                                 


Q ss_pred             -HHHHhhCC---HHHHHHHHHHhhcCCCC-CC---chHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHhc
Q 026767          136 -IVYLYAND---FKQAEKCYNDCSQVDAF-LR---SDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLAR  205 (233)
Q Consensus       136 -~~~~~~gd---~~~A~~~~~~al~~~~~-~~---~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~  205 (233)
                       .++...|+   +.+|...|++++..... ..   .....+...|+..+ ..|+++.|..+++++ .+.+-++.......
T Consensus       183 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             HHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence             44444444   44444444444422110 00   11234666678777 688888888888888 45544455555544


Q ss_pred             cCCC
Q 026767          206 KLPT  209 (233)
Q Consensus       206 ~l~~  209 (233)
                      .+..
T Consensus       263 ~~~~  266 (272)
T 3u4t_A          263 MKLE  266 (272)
T ss_dssp             ----
T ss_pred             hhhc
Confidence            4433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.51  E-value=1.4e-12  Score=106.25  Aligned_cols=123  Identities=14%  Similarity=0.183  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-----hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-----DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-----~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +.++..+|.+|...|++++|+.+|++|++    .++    ..++.++|.++.     .+++++|+.+|++|+++    ++
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~   73 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NY   73 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CC
Confidence            45666666766666777777777766665    122    234555555554     24556666666665544    11


Q ss_pred             hHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh----hCCHHHHHHHHHHhh
Q 026767           84 EQMAFDLYRAATNVYIK----LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY----ANDFKQAEKCYNDCS  155 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~gd~~~A~~~~~~al  155 (233)
                          ..++.++|.++..    .+++++|+.+|++++..    +    ...++.++|.+|..    .+++++|+.+|++++
T Consensus        74 ----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~  141 (273)
T 1ouv_A           74 ----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC  141 (273)
T ss_dssp             ----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence                2345555555555    55555555555555532    1    22344555555555    555555555555554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.51  E-value=4.5e-13  Score=110.82  Aligned_cols=165  Identities=12%  Similarity=0.008  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            9 AKHMESAAALAKELH-NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         9 a~~~~~~g~~~~~~g-~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ..++..+|.++...| ++++|+.+|++++.+..      ....++..+|.++. .|++++|+.+|++++++.+...    
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----  159 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK------TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH----  159 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT------TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS----
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH----
Confidence            456778888888888 88888888888876532      23456888899988 7999999999999998876532    


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC-CC----C
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD-AF----L  161 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-~~----~  161 (233)
                        .++..+|.++...|++++|+.+|++++.+.      +....++..+|.++...|++++|...|++++... ..    .
T Consensus       160 --~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  231 (330)
T 3hym_B          160 --LPMLYIGLEYGLTNNSKLAERFFSQALSIA------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT  231 (330)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred             --HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence              356679999999999999999999988652      2335678999999999999999999999998432 21    1


Q ss_pred             CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          162 RSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       162 ~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ......++..++.++ ..|+++.|...++++
T Consensus       232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  262 (330)
T 3hym_B          232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQA  262 (330)
T ss_dssp             TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            133356788899988 799999999999988

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.51  E-value=3.1e-13  Score=116.93  Aligned_cols=164  Identities=9%  Similarity=-0.023  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC-HHHHHHHHHHHHHHHHhcCC
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV-PEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~-~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ..-+.++..+|.++...|++++|+.+|++++.+.      ..-..++.++|.++. .|+ +++|+.+|++++++.+..  
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~--  165 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--  165 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--
Confidence            3467889999999999999999999999999874      235678999999999 796 999999999999987753  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCc
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRS  163 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~  163 (233)
                          ..++.++|.++..+|++++|+.+|++++.+      .+....++.++|.++..+|++++|+.+|++++.+.-    
T Consensus       166 ----~~a~~~~g~~~~~~g~~~eAl~~~~kal~l------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P----  231 (382)
T 2h6f_A          166 ----YQVWHHRRVLVEWLRDPSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----  231 (382)
T ss_dssp             ----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT----
T ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----
Confidence                368999999999999999999999999976      334467899999999999999999999999995431    


Q ss_pred             hHHHHHHHHHHHH-h-cCCHHHH-----HHHHhhc
Q 026767          164 DQNRCATKLISAY-T-EGDVEEI-----KRVAQSS  191 (233)
Q Consensus       164 ~e~~~l~~L~~a~-~-~gd~~~a-----~~~~~~~  191 (233)
                      ....+...++.++ . .|..+.|     ..+++++
T Consensus       232 ~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~A  266 (382)
T 2h6f_A          232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM  266 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            2256777888888 5 4553555     3556666

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.51  E-value=1.5e-12  Score=108.56  Aligned_cols=174  Identities=12%  Similarity=0.041  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH-
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA-   87 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~-   87 (233)
                      .++..+|.+|...|++++|+.++++++.+.     + ....++..+|.++. .|++++|+.+|++++++.+........ 
T Consensus       155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  228 (359)
T 3ieg_A          155 ELRELRAECFIKEGEPRKAISDLKAASKLK-----S-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY  228 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----S-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHH
Confidence            455666677777777777777777766542     1 22457788888888 799999999999998876654432111 


Q ss_pred             -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC
Q 026767           88 -----FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR  162 (233)
Q Consensus        88 -----~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~  162 (233)
                           ......+|.++...|++++|+.+|++++.....  +.......+..+|.++...|++.+|...|++++...    
T Consensus       229 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----  302 (359)
T 3ieg_A          229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME----  302 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence                 112345688899999999999999999876422  223334567889999999999999999999998542    


Q ss_pred             chHHHHHHHHHHHH-hcCCHHHHHHHHhhc-cccc
Q 026767          163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISN  195 (233)
Q Consensus       163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~  195 (233)
                      +....++..++.++ ..|+++.|...++++ .+.+
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            22356788889988 799999999999998 4433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.50  E-value=2.4e-13  Score=107.88  Aligned_cols=165  Identities=16%  Similarity=0.123  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ..-.+..+...|.++...|++++|+.+|++++...     + ....++..+|.++. .|++++|+.+|++++++.+..  
T Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--   90 (243)
T 2q7f_A           19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----K-EDAIPYINFANLLSSVNELERALAFYDKALELDSSA--   90 (243)
T ss_dssp             -----------------------CCTTHHHHHTTC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--
Confidence            34567889999999999999999999999998742     2 23678899999999 899999999999999885532  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCc
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRS  163 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~  163 (233)
                          ..++..+|.++...|++++|+.+|++++.+..      ....++..+|.++...|++++|...+++++....    
T Consensus        91 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----  156 (243)
T 2q7f_A           91 ----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE----  156 (243)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----
T ss_pred             ----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----
Confidence                35789999999999999999999999997632      2245789999999999999999999999985432    


Q ss_pred             hHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          164 DQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       164 ~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ....+...++.++ ..|+++.|...+++.
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  185 (243)
T 2q7f_A          157 NDTEARFQFGMCLANEGMLDEALSQFAAV  185 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            1245777888888 899999999999988

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.50  E-value=1.5e-12  Score=115.07  Aligned_cols=167  Identities=9%  Similarity=0.073  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ..++..+|.+|...|++++|+.+|++++.+...      ...++..+|.++. .|++++|+.+|++++++.+...     
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----  378 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP-----  378 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----
Confidence            456777788888888888888888888776422      2256777888888 7888888888888888765432     


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh----------CCHHHHHHHHHHhhcC
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA----------NDFKQAEKCYNDCSQV  157 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----------gd~~~A~~~~~~al~~  157 (233)
                       .++..+|.++...|++++|+.+|++++.+.............+..++.++...          |++.+|...|++++..
T Consensus       379 -~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  457 (537)
T 3fp2_A          379 -EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL  457 (537)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence             46778888888899999999999998888766655555555567788888888          8999999999988744


Q ss_pred             CCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          158 DAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       158 ~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..    ....++..++.++ ..|+.+.|...++++
T Consensus       458 ~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  488 (537)
T 3fp2_A          458 DP----RSEQAKIGLAQLKLQMEKIDEAIELFEDS  488 (537)
T ss_dssp             CT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CC----CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            21    2246778889988 799999999999988

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.49  E-value=9.9e-13  Score=95.85  Aligned_cols=99  Identities=8%  Similarity=-0.009  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      ..|.++.+.|+.|...|++++|+.+|++|+.+.     + .-+.++.++|.++. .|++++|+..|++|+++.+..    
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----   80 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----P-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----   80 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----
Confidence            345556666666666666666666666665542     1 12445556666665 566666666666666553321    


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                        ..++.++|.++..+|++++|+..|++++++
T Consensus        81 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           81 --IKGYIRKAACLVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence              235555666666666666666666666554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.49  E-value=2.5e-12  Score=104.78  Aligned_cols=153  Identities=16%  Similarity=0.182  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-----hCCHHHHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKE----LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-----DAVPEDAIQLYTDACIMLE   79 (233)
Q Consensus         9 a~~~~~~g~~~~~----~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-----~g~~~~A~~~~~~Al~~~~   79 (233)
                      ..++.++|.+|..    .+++++|+.+|++|+++    +    ...++.++|.+|.     .+++++|+.+|++|++.  
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--  107 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--  107 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--
Confidence            4577788888888    88888888888888765    2    3556777777776     37788888888888765  


Q ss_pred             hcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh----hCCHHHHHHHH
Q 026767           80 EDDKEQMAFDLYRAATNVYIK----LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY----ANDFKQAEKCY  151 (233)
Q Consensus        80 ~~g~~~~~~~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~gd~~~A~~~~  151 (233)
                        ++    ..++.++|.+|..    .+++++|+.+|+++++.    +    ...++.++|.++..    .+++++|..+|
T Consensus       108 --~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~  173 (273)
T 1ouv_A          108 --KY----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALASY  173 (273)
T ss_dssp             --TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             --CC----ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence              21    2467778888877    78888888888877753    1    23456777777777    77777777777


Q ss_pred             HHhhcCCCCCCchHHHHHHHHHHHH-h----cCCHHHHHHHHhhc
Q 026767          152 NDCSQVDAFLRSDQNRCATKLISAY-T----EGDVEEIKRVAQSS  191 (233)
Q Consensus       152 ~~al~~~~~~~~~e~~~l~~L~~a~-~----~gd~~~a~~~~~~~  191 (233)
                      ++++...      .......|+..+ .    .+|.++|...++++
T Consensus       174 ~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a  212 (273)
T 1ouv_A          174 DKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKA  212 (273)
T ss_dssp             HHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence            7776431      134556677766 5    67777777777776

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.49  E-value=4.7e-12  Score=104.47  Aligned_cols=93  Identities=14%  Similarity=0.102  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC  168 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~  168 (233)
                      .++..+|.++...|++++|+.++++++.+.      +....++..+|.++...|++++|...|++++....    ....+
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~  242 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVELR------PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP----GYVRV  242 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHH
Confidence            456666666666666666666666666542      12234556666666666666666666666653321    12334


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          169 ATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ...++.++ ..|+++.|...++++
T Consensus       243 ~~~l~~~~~~~g~~~~A~~~~~~a  266 (327)
T 3cv0_A          243 MYNMAVSYSNMSQYDLAAKQLVRA  266 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHH
Confidence            55666655 566666666666665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.49  E-value=4.1e-12  Score=104.85  Aligned_cols=171  Identities=13%  Similarity=0.095  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +......+...|..+...|++++|+.+|++++....      ....++..+|.++. .|++++|+.+|++++++.+..  
T Consensus        17 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--   88 (327)
T 3cv0_A           17 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--   88 (327)
T ss_dssp             GGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             chhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC--
Confidence            334445566777777777888888888887776531      23456667777777 677777777777777764322  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc------------------------------------------
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC------------------------------------------  121 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------------------  121 (233)
                          ..++..+|.++...|++++|+.+|++++......                                          
T Consensus        89 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  164 (327)
T 3cv0_A           89 ----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA  164 (327)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence                2456667777777777777777766665421100                                          


Q ss_pred             -cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          122 -NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       122 -~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                       ...+....++..+|.++...|++++|...+++++....    ....++..++..+ ..|+++.|...++++
T Consensus       165 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP----DDAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             01122457789999999999999999999999985431    2256778889988 899999999999998

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.47  E-value=3.4e-12  Score=106.36  Aligned_cols=166  Identities=13%  Similarity=0.040  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      .++..+|.+|...|++++|+.+|++++.+.     + ....++..+|.++. .|++++|+.+|++++++.+..++.....
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  111 (359)
T 3ieg_A           38 IAYYRRATVFLAMGKSKAALPDLTKVIALK-----M-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE  111 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHH
Confidence            455556666666666666666666666552     1 12255666677776 5777777777777766544110111110


Q ss_pred             ---------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC
Q 026767           89 ---------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA  159 (233)
Q Consensus        89 ---------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~  159 (233)
                               .....+|.++...|++++|+.+|++++...      +....++..+|.++...|++++|...+++++....
T Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  185 (359)
T 3ieg_A          112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS  185 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence                     112233677777788888888887777642      22346788999999999999999999999885432


Q ss_pred             CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          160 FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       160 ~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                          ....++..++.++ ..|+++.|...++++
T Consensus       186 ----~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          186 ----DNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                1245777888888 789999999988888

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.47  E-value=1.1e-12  Score=104.06  Aligned_cols=123  Identities=12%  Similarity=0.097  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC-hHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK-EQMA   87 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~-~~~~   87 (233)
                      .++.++|.+|...|++++|+.+|++++.+.     + ....++.++|.++. .|++++|+.+|++++++.+.... ....
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  116 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKN-----Y-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY  116 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----C-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----c-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            466679999999999999999999999653     2 36788999999999 89999999999999999876542 2234


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch--HHHhHHHHHHHHHhhCCH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS--QCKAYLSAIIVYLYANDF  144 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~a~~~~~lg~~~~~~gd~  144 (233)
                      +.++.++|.++...|++++|+.+|++++.+      .+.  ...++.++|.++...|+.
T Consensus       117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          117 AIYYLKEGQKFQQAGNIEKAEENYKHATDV------TSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHhccHHHHHHHHHHHHhc------CCCcccHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999964      334  567889999999877654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.47  E-value=3.1e-12  Score=113.09  Aligned_cols=162  Identities=12%  Similarity=0.132  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      ..+.++..+|.++...|++++|+.+|++++.+.     +.  ..++..+|.++. .|++++|+.+|++++++.+..    
T Consensus       241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----  309 (537)
T 3fp2_A          241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLH-----PT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY----  309 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-----CC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC----
Confidence            347789999999999999999999999999873     33  678999999999 899999999999999887642    


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchH
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQ  165 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e  165 (233)
                        ..++..+|.++...|++++|+.+|++++.+..      ....++..+|.++...|++++|...|++++....    ..
T Consensus       310 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~  377 (537)
T 3fp2_A          310 --PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP----TL  377 (537)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC
T ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC
Confidence              35789999999999999999999999997632      2235789999999999999999999999985431    12


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          166 NRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       166 ~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..+...++.++ ..|+++.|...++++
T Consensus       378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          378 PEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            35677888888 899999999998886

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.7e-12  Score=113.87  Aligned_cols=167  Identities=13%  Similarity=0.107  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ..++..+|.+|...|++++|+.+|++++.+...      ...++..+|.++. .|++++|+.+|+++++..+...     
T Consensus       304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----  372 (514)
T 2gw1_A          304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP-----  372 (514)
T ss_dssp             THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS-----
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH-----
Confidence            456778888888888888888888888876321      2457888999999 7999999999999998865432     


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh---hCCHHHHHHHHHHhhcCCCCCCch
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY---ANDFKQAEKCYNDCSQVDAFLRSD  164 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~---~gd~~~A~~~~~~al~~~~~~~~~  164 (233)
                       .++..+|.++...|++++|+.+|++++.+............++..+|.++..   .|++++|...|++++....    .
T Consensus       373 -~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~  447 (514)
T 2gw1_A          373 -EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP----R  447 (514)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT----T
T ss_pred             -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc----c
Confidence             4788999999999999999999999998876655544446688999999999   9999999999999985431    2


Q ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          165 QNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       165 e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ...+...++.++ ..|+.+.|...++++
T Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          448 SEQAKIGLAQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            245777889988 799999999999998

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.47  E-value=5.3e-12  Score=109.30  Aligned_cols=170  Identities=12%  Similarity=0.047  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH-
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA-   87 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~-   87 (233)
                      .++..+|.+|...|++++|+.+|++++....      ....++..+|.++. .|++++|+.+|++++.+.+........ 
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~  251 (450)
T 2y4t_A          178 ELRELRAECFIKEGEPRKAISDLKAASKLKN------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY  251 (450)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            3455566666666666666666666665531      12467788899998 799999999999999775543321111 


Q ss_pred             -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC
Q 026767           88 -----FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR  162 (233)
Q Consensus        88 -----~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~  162 (233)
                           ......+|.++...|++++|+.+|++++.+...  +......++..+|.++...|++.+|+..+++++...    
T Consensus       252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----  325 (450)
T 2y4t_A          252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME----  325 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence                 112244599999999999999999999975321  222335678999999999999999999999998542    


Q ss_pred             chHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +....++..++.++ ..|+++.|...++++
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  355 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETA  355 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            12357888899988 799999999999999

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.46  E-value=3.5e-12  Score=95.32  Aligned_cols=135  Identities=13%  Similarity=0.036  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ....+..+...|.++...|++++|+.+|++++.+..      ....++.++|.++. .|++++|+.+|++++.+.+..  
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--   80 (166)
T 1a17_A            9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--
Confidence            356788999999999999999999999999998742      23678999999999 799999999999999986532  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                          ..++.++|.++..+|++++|+.+|++++.+..    ....+..+...+..+...|++.+|+..++++.
T Consensus        81 ----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           81 ----IKGYYRRAASNMALGKFRAALRDYETVVKVKP----HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence                35789999999999999999999999997632    22333444666777888999999999998864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.46  E-value=5.3e-12  Score=113.29  Aligned_cols=171  Identities=12%  Similarity=-0.004  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCchHHHH--------------HHHHHHHHhh
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASEL--------------YNECGRSQPASD--------------ALAKAARALE   60 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g~~~~~a~--------------~l~~lg~~~~   60 (233)
                      ..++..++.+|...|++++|+..+++++..              |.+.|+...+..              ++..+|.+|.
T Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  418 (597)
T 2xpi_A          339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA  418 (597)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            346788899999999999999999988743              333344332222              2333344444


Q ss_pred             -hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           61 -DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        61 -~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                       .|++++|+++|++++++.+..      ..++..+|.+|...|++++|+.+|++++.+.      +....++..+|.++.
T Consensus       419 ~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          419 IEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEYLQSSYALF------QYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHTTTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHH
Confidence             455555555555555443321      1345556666666666666666666665431      112345777788888


Q ss_pred             hhCCHHHHHHHHHHhhcCC-C--CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          140 YANDFKQAEKCYNDCSQVD-A--FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       140 ~~gd~~~A~~~~~~al~~~-~--~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..|++++|.+.|++++... .  ........++..++.++ ..|+++.|...+++.
T Consensus       487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            8888888888888776431 1  11122256777778777 678888888888777

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.46  E-value=5.3e-12  Score=90.16  Aligned_cols=129  Identities=17%  Similarity=0.222  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      .++..+|.++...|++++|+.++++++....      ....++..+|.++. .|++++|+.++++++...+..      .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~   69 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------A   69 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------h
Confidence            5788999999999999999999999987631      23567888999999 799999999999999875432      2


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      .++..+|.++...|++++|+.++++++....      ....++..+|.++...|++.+|...|++++.
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            4788999999999999999999999987532      2245778999999999999999999999873

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.46  E-value=1.2e-12  Score=95.34  Aligned_cols=99  Identities=16%  Similarity=0.148  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..+..+.+.|..+. .|++++|+++|++|+++.+..      ..++.++|.++..+|++++|+..|++++.+      .+
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p   78 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRL------DS   78 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh------hh
Confidence            46788999999999 899999999999999986542      368999999999999999999999999976      23


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ....+++++|.++..+|++++|++.|++++.+
T Consensus        79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34568999999999999999999999999854

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.45  E-value=2.1e-12  Score=109.51  Aligned_cols=136  Identities=8%  Similarity=-0.055  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCch---------HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQ---------PASDALAKAARALE-DAVPEDAIQLYTDACI   76 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~---------~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~   76 (233)
                      ..+.++.++|.+|...|++++|+.+|++|+.+.....+..         ..+.++.++|.++. .|++++|+.+|++|++
T Consensus       145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567777788888778888888888888887764443211         12567777777777 6777777777777777


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH-HHHHHh
Q 026767           77 MLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE-KCYNDC  154 (233)
Q Consensus        77 ~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~-~~~~~a  154 (233)
                      +.+..      ..++.++|.+|..+|++++|+.+|++++.+.      +....++..++.++...|++.+|. ..|.+.
T Consensus       225 ~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          225 LDSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLY------PNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            75431      2467777777777777777777777777652      222346677777777777777773 344444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.45  E-value=2.3e-12  Score=97.65  Aligned_cols=112  Identities=16%  Similarity=0.027  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGR------SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~------~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .|..+.+.|+.+...|++++|+.+|++|+++-...-+      ...-+.+|.|.|.++. .|++++|+.+|.+|+++|..
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4667788888888888888888888888888755211      1123457888888888 68888888888888887655


Q ss_pred             cC--ChHHHHHHH----HHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767           81 DD--KEQMAFDLY----RAATNVYIKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        81 ~g--~~~~~~~~l----~~lg~~~~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      .+  ++. -+.++    ++.|.++..+|+|++|+..|++++++.-+
T Consensus        90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           90 RGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            44  222 23455    78888888888888888888888877544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.44  E-value=1.6e-12  Score=112.36  Aligned_cols=160  Identities=8%  Similarity=0.021  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            9 AKHMESAAALAKELHN-WREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~-~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ..+|.+.|.++..+|+ +++|+.+|++|+.+.-      .-..+|.++|.++. .|++++|+.+|++|+++.+..     
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P------~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-----  199 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-----  199 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-----
Confidence            5678999999999997 9999999999999742      34678999999999 899999999999999986643     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh-hCCHHHH-----HHHHHHhhcC-CC
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY-ANDFKQA-----EKCYNDCSQV-DA  159 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~gd~~~A-----~~~~~~al~~-~~  159 (233)
                       ..++.++|.++..+|++++|+.+|++++.+      .+....+++++|.++.. .|.+++|     +.+|++++.+ +.
T Consensus       200 -~~a~~~lg~~~~~~g~~~eAl~~~~~al~l------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~  272 (382)
T 2h6f_A          200 -YHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH  272 (382)
T ss_dssp             -HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence             358999999999999999999999999976      33445688999999999 5555777     5889998843 32


Q ss_pred             CCCchHHHHHHHHHHHH-hcC--CHHHHHHHHhhc
Q 026767          160 FLRSDQNRCATKLISAY-TEG--DVEEIKRVAQSS  191 (233)
Q Consensus       160 ~~~~~e~~~l~~L~~a~-~~g--d~~~a~~~~~~~  191 (233)
                      .     ..+...++.++ ..|  +.+++.+.+++.
T Consensus       273 ~-----~~a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          273 N-----ESAWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             C-----HHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             C-----HHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence            2     34556666666 445  456666655543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.44  E-value=1.1e-11  Score=93.59  Aligned_cols=130  Identities=6%  Similarity=-0.069  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ..++..+|.++...|++++|+.++++++...     + ....++..+|.++. .|++++|++++++++.+.+..      
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------  109 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADA-----P-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------  109 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------
Confidence            5778999999999999999999999999873     1 23577899999999 799999999999999886542      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      ..++..+|.++...|++++|+.++++++...      +....++..+|.++...|++++|..++++++.
T Consensus       110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLR------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3578899999999999999999999999763      22356789999999999999999999999873

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.43  E-value=3e-12  Score=118.35  Aligned_cols=161  Identities=9%  Similarity=-0.053  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .+.++...|.+|...|++++|+..|++++.+.-      .-+.++.++|.++. .|++++|+.+|++|+++.+..     
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----  500 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVG------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-----  500 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-----
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Confidence            356788999999999999999999999998742      23678999999999 899999999999999998764     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                       ..++.++|.++..+|+|++ +.+|++++.+      .+....+++++|.++..+|++++|+..|++++.+.    ....
T Consensus       501 -~~~~~~lg~~~~~~g~~~~-~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~  568 (681)
T 2pzi_A          501 -LAPKLALAATAELAGNTDE-HKFYQTVWST------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS----RHFT  568 (681)
T ss_dssp             -SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS----TTHH
T ss_pred             -hHHHHHHHHHHHHcCChHH-HHHHHHHHHh------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC----cccH
Confidence             2578899999999999999 9999999976      23345688999999999999999999999998553    2235


Q ss_pred             HHHHHHHHHH-hcCC-----HHHHHHHHhhc
Q 026767          167 RCATKLISAY-TEGD-----VEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd-----~~~a~~~~~~~  191 (233)
                      .+...++.++ ..++     .+.+.++.+..
T Consensus       569 ~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l  599 (681)
T 2pzi_A          569 TARLTSAVTLLSGRSTSEVTEEQIRDAARRV  599 (681)
T ss_dssp             HHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence            5667778777 4443     35555555544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.42  E-value=1.3e-11  Score=100.03  Aligned_cols=144  Identities=17%  Similarity=0.067  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh---------hCCHHHHHHHHHHHHHHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE---------DAVPEDAIQLYTDACIML   78 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~---------~g~~~~A~~~~~~Al~~~   78 (233)
                      ...++..+|.+|...|++++|+.+|++++.++...   .....++..+|.++.         .|++++|+..|+++++.+
T Consensus        51 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  127 (261)
T 3qky_A           51 AADAQFYLARAYYQNKEYLLAASEYERFIQIYQID---PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY  127 (261)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC---chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence            47889999999999999999999999999986332   245678899999986         589999999999999998


Q ss_pred             HhcCChHHHH-----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh------
Q 026767           79 EEDDKEQMAF-----------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA------  141 (233)
Q Consensus        79 ~~~g~~~~~~-----------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~------  141 (233)
                      +.......+.           ..+..+|.+|...|+|++|+..|++++....   +......+++.+|.++..+      
T Consensus       128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~~  204 (261)
T 3qky_A          128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAYAEQSVR  204 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhcccchh
Confidence            8765433221           1127899999999999999999999997642   2333566889999999977      


Q ss_pred             ----CCHHHHHHHHHHhhcC
Q 026767          142 ----NDFKQAEKCYNDCSQV  157 (233)
Q Consensus       142 ----gd~~~A~~~~~~al~~  157 (233)
                          |++++|+..|++++..
T Consensus       205 ~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          205 ARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             GGHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHH
Confidence                9999999999999843

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.42  E-value=6.7e-12  Score=104.31  Aligned_cols=168  Identities=13%  Similarity=0.004  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      ..+..+|.+|...|++++|+.++++        +   ....++..+|.++. .|++++|++.|++++++.+..  .  ..
T Consensus       102 ~~~~~la~~~~~~g~~~~Al~~l~~--------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~--~~  166 (291)
T 3mkr_A          102 TFLLMAASIYFYDQNPDAALRTLHQ--------G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA--T--LT  166 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTT--------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H--HH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhC--------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc--H--HH
Confidence            4566666666667777777766665        1   22346777788888 688888888888888774321  0  01


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC  168 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~  168 (233)
                      ........++...|++++|+.+|++++...      +....+++++|.++..+|++++|+..|++++...    +....+
T Consensus       167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~----p~~~~~  236 (291)
T 3mkr_A          167 QLATAWVSLAAGGEKLQDAYYIFQEMADKC------SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD----SGHPET  236 (291)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHH
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHH
Confidence            111112233344588888888888888652      2235577888888888899999998888888432    123556


Q ss_pred             HHHHHHHH-hcCCHH-HHHHHHhhc-ccccchHHHHH
Q 026767          169 ATKLISAY-TEGDVE-EIKRVAQSS-AISNLDHVIIK  202 (233)
Q Consensus       169 l~~L~~a~-~~gd~~-~a~~~~~~~-~~~~ld~~~~~  202 (233)
                      +..++.++ ..|+.. .+..++++. .+.+=++.+..
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            77788766 666664 456777766 34443444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.41  E-value=1.6e-11  Score=106.27  Aligned_cols=168  Identities=11%  Similarity=0.119  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL   90 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~   90 (233)
                      +...|.++...|++++|+.+|++++.+..      ....++..+|.+|. .|++++|+.+|++++++.+..      ..+
T Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~  213 (450)
T 2y4t_A          146 LRSQALNAFGSGDYTAAIAFLDKILEVCV------WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEA  213 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHH
Confidence            45557889999999999999999998632      24577899999999 799999999999999986542      358


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch------HHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS------QCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD  164 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~  164 (233)
                      +..+|.++...|++++|+.+|++++.+.........      ....+..+|.++...|++.+|+..|++++.+.......
T Consensus       214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  293 (450)
T 2y4t_A          214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY  293 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHH
Confidence            899999999999999999999999965322111000      00112445999999999999999999998543222222


Q ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          165 QNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       165 e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ....+..++.++ ..|+++.|...++++
T Consensus       294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a  321 (450)
T 2y4t_A          294 TVRSKERICHCFSKDEKPVEAIRVCSEV  321 (450)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            356788889988 899999999999988

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.41  E-value=1e-11  Score=94.03  Aligned_cols=111  Identities=8%  Similarity=-0.061  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEED------DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD  119 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~------g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~  119 (233)
                      ..+..+.+.|..+. .|++++|+.+|++|+++.+..      .....-+.++.++|.++..+|+|++|+..|.++++++.
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            36778899999999 899999999999999999983      21112345999999999999999999999999999854


Q ss_pred             Hcc-CcchHHHhH----HHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          120 KCN-ATNSQCKAY----LSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       120 ~~~-~~~~~a~~~----~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      +.+ ..+..+.+|    ++.|.++..+|++++|+.+|++++.+
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            332 234566777    99999999999999999999999844

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.5e-11  Score=88.51  Aligned_cols=119  Identities=14%  Similarity=0.019  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .+..+.+.|..+...|++++|+.+|++++.+..      .-..++.++|.++. .|++++|+.+|++++++.+..     
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----   71 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-----   71 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Confidence            456777778877778888888888888877632      22467777787777 688888888888887775432     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVY  138 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~  138 (233)
                       ..++.++|.++..+|++++|+..|++++.+..+.+..+....+...+..+.
T Consensus        72 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           72 -VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence             246777788888888888888888887776544333333344444444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.39  E-value=6.5e-12  Score=101.39  Aligned_cols=153  Identities=11%  Similarity=-0.066  Sum_probs=118.7

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI   99 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~   99 (233)
                      ..|++++|+.+|++++...  ..+....+.++..+|.++. .|++++|+.+|++++++.+..      ..++..+|.++.
T Consensus        17 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~   88 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLT   88 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHH
Confidence            4578999999999998862  2345578899999999999 899999999999999985532      357899999999


Q ss_pred             HhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHhcC
Q 026767          100 KLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEG  179 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~~g  179 (233)
                      ..|++++|+.+|++++.+..      ....++..+|.++...|++++|...|++++......  .....  .+...+..|
T Consensus        89 ~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~--~~~~~~~~~  158 (275)
T 1xnf_A           89 QAGNFDAAYEAFDSVLELDP------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND--PFRSL--WLYLAEQKL  158 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH--HHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHhcCc------cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--hHHHH--HHHHHHHhc
Confidence            99999999999999998632      234678999999999999999999999998543211  11111  222223557


Q ss_pred             CHHHHHHHHhhc
Q 026767          180 DVEEIKRVAQSS  191 (233)
Q Consensus       180 d~~~a~~~~~~~  191 (233)
                      +++.|...+++.
T Consensus       159 ~~~~A~~~~~~~  170 (275)
T 1xnf_A          159 DEKQAKEVLKQH  170 (275)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            777777777555

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.38  E-value=9.4e-12  Score=93.81  Aligned_cols=98  Identities=14%  Similarity=-0.024  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      -+.++.++|.++...|++++|+.+|++++.+.     | .-+.++.++|.++. .|++++|+.+|++|+++.+...    
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~----  104 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----F-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----  104 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc----
Confidence            44555566666666666666666666665552     1 23445556666666 5666666666666665554322    


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                        .++.++|.+|..+|++++|+.+|++++.+
T Consensus       105 --~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          105 --TPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              34556666666666666666666666654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.38  E-value=8.2e-12  Score=105.88  Aligned_cols=163  Identities=13%  Similarity=0.073  Sum_probs=125.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHH
Q 026767           22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK---------EQMAFDLY   91 (233)
Q Consensus        22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~---------~~~~~~~l   91 (233)
                      ++++++|+.+|++++...      ...+.++.++|.++. .|++++|+.+|++|+.+.+....         ......++
T Consensus       126 L~~~~~A~~~~~~a~~~~------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  199 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEK------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH  199 (336)
T ss_dssp             EEEEECCCCGGGCCHHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence            344556666666665542      356888999999999 89999999999999999887641         12224789


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATK  171 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~  171 (233)
                      .++|.++..+|+|++|+.+|++++.+.      +....+++++|.++..+|++++|+..|++++.+..    ....+...
T Consensus       200 ~nla~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~a~~~  269 (336)
T 1p5q_A          200 LNLAMCHLKLQAFSAAIESCNKALELD------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP----NNKAAKTQ  269 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHH
Confidence            999999999999999999999999872      33467899999999999999999999999985432    12457778


Q ss_pred             HHHHH-hcCCHHHHHHHHhhcccccchHHH
Q 026767          172 LISAY-TEGDVEEIKRVAQSSAISNLDHVI  200 (233)
Q Consensus       172 L~~a~-~~gd~~~a~~~~~~~~~~~ld~~~  200 (233)
                      |+.++ ..|+.+++....-+-+|..+....
T Consensus       270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  299 (336)
T 1p5q_A          270 LAVCQQRIRRQLAREKKLYANMFERLAEEE  299 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            88888 688888886554444455444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.38  E-value=8.4e-12  Score=94.05  Aligned_cols=107  Identities=11%  Similarity=-0.022  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------chHHHHHHHHHHHHhh-hCCHHHHHHHH
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGR------------SQPASDALAKAARALE-DAVPEDAIQLY   71 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~------------~~~~a~~l~~lg~~~~-~g~~~~A~~~~   71 (233)
                      ....+..+.+.|+.+...|++++|+.+|++|+.+......            ....+.++.++|.+|. .|++++|+.++
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3455667777777777777777777777777776543221            1223455566666666 56666666666


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           72 TDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        72 ~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ++++++.+..      ..++.++|.++..+|+|++|+..|++++.+
T Consensus        87 ~~al~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           87 SEVLKREETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            6666553221      235556666666666666666666666654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.37  E-value=2.6e-11  Score=106.27  Aligned_cols=174  Identities=13%  Similarity=0.081  Sum_probs=141.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ....+.++...|..+...|++++|+.+|++++...     +.  ..++.++|.++. .|++++|+.+|++++++.+..  
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--   72 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED--PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY--   72 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC--
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc--HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH--
Confidence            45678999999999999999999999999999985     32  678999999999 799999999999999875432  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC----------------------------------------
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA----------------------------------------  123 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------  123 (233)
                          ..++..+|.++..+|++++|+..|++++.+......                                        
T Consensus        73 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  148 (514)
T 2gw1_A           73 ----SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA  148 (514)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred             ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence                258899999999999999999999998754310000                                        


Q ss_pred             ---------------------------------cchHHHhHHHHHHHHHh---hCCHHHHHHHHHHhhc-----CCCC--
Q 026767          124 ---------------------------------TNSQCKAYLSAIIVYLY---ANDFKQAEKCYNDCSQ-----VDAF--  160 (233)
Q Consensus       124 ---------------------------------~~~~a~~~~~lg~~~~~---~gd~~~A~~~~~~al~-----~~~~--  160 (233)
                                                       .+.....+...|.+++.   .|++++|+..|++++.     +...  
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  228 (514)
T 2gw1_A          149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE  228 (514)
T ss_dssp             --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred             hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence                                             01225667888888887   8999999999999986     4211  


Q ss_pred             C---CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          161 L---RSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       161 ~---~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .   ......++..++..+ ..|+++.|...++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  263 (514)
T 2gw1_A          229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA  263 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            1   245577888899988 899999999999988

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.37  E-value=1.9e-11  Score=108.82  Aligned_cols=138  Identities=9%  Similarity=0.010  Sum_probs=114.4

Q ss_pred             HHHHHhh-hCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc--cCcchHH
Q 026767           54 KAARALE-DAVPEDAIQLYTDACIMLEED-D-KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC--NATNSQC  128 (233)
Q Consensus        54 ~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a  128 (233)
                      +.+..+. +|+|++|+..|++++++.+.. | +....+.+++++|.+|..+|+|++|+.++++++.++++.  .+.+..+
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            3344455 799999999999999999874 3 334456799999999999999999999999999998775  3456778


Q ss_pred             HhHHHHHHHHHhhCCHHHHHHHHHHhhcCC----CCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          129 KAYLSAIIVYLYANDFKQAEKCYNDCSQVD----AFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       129 ~~~~~lg~~~~~~gd~~~A~~~~~~al~~~----~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .++++||.+|..+|++++|+..|++|+.+.    +-+++.....+..|..++ +.+.+..++..++++
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999553    335567777888888888 778788887777665

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.37  E-value=1.4e-11  Score=92.91  Aligned_cols=102  Identities=15%  Similarity=0.104  Sum_probs=88.9

Q ss_pred             chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767           45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      ......++.++|.++. .|++++|+.+|++++.+.+..      ..++.++|.++..+|+|++|+.+|++++.+.     
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-----  100 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALG-----  100 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----
Confidence            3456788999999999 799999999999999987643      3588999999999999999999999999872     


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                       +....+++++|.++..+|++++|+.+|++++.+.
T Consensus       101 -P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          101 -KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             -SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             2334578999999999999999999999998554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.36  E-value=1e-11  Score=96.63  Aligned_cols=131  Identities=8%  Similarity=-0.022  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHH----------HHHHHHHHHHhh-hCCHHHHHHHHHHH
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPA----------SDALAKAARALE-DAVPEDAIQLYTDA   74 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~----------a~~l~~lg~~~~-~g~~~~A~~~~~~A   74 (233)
                      ...+..+...|..+...|++++|+.+|++++.+.....+....          ..++.++|.++. .|++++|+.+|+++
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3456667777777777777777777777777765443332222          466777777777 67777777777777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH
Q 026767           75 CIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE  148 (233)
Q Consensus        75 l~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~  148 (233)
                      +.+.+..      ..++.++|.++..+|++++|+.+|++++.+.      +....++..++.++...++..++.
T Consensus       115 l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          115 LKIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLN------PNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            7764321      2466777777777777777777777777552      122345566677776666666655

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.35  E-value=8.1e-12  Score=112.61  Aligned_cols=148  Identities=12%  Similarity=-0.053  Sum_probs=84.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767           22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK  100 (233)
Q Consensus        22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~  100 (233)
                      .|++++|+.+|++++.+..      ..+.++.++|.++. .|++++|+++|++++++.+..      ..++.++|.++..
T Consensus         2 ~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~   69 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP------QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH------PEAVARLGRVRWT   69 (568)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence            3667777777777766532      22456777777777 677777777777777664432      2466777777777


Q ss_pred             hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hc-
Q 026767          101 LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TE-  178 (233)
Q Consensus       101 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~-  178 (233)
                      +|++++|+.+|++++.+.      +....++.++|.++..+|++++|.+.|++++....    ....++..++.++ .. 
T Consensus        70 ~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~  139 (568)
T 2vsy_A           70 QQRHAEAAVLLQQASDAA------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP----EEPYITAQLLNWRRRLC  139 (568)
T ss_dssp             TTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhh
Confidence            777777777777777652      22245667777777777777777777777764321    1234566666666 56 


Q ss_pred             --CCHHHHHHHHhhc
Q 026767          179 --GDVEEIKRVAQSS  191 (233)
Q Consensus       179 --gd~~~a~~~~~~~  191 (233)
                        |+.++|.+.++++
T Consensus       140 ~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A          140 DWRALDVLSAQVRAA  154 (568)
T ss_dssp             CCTTHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHH
Confidence              7777777777666

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.35  E-value=1.2e-11  Score=92.53  Aligned_cols=121  Identities=12%  Similarity=0.034  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      .......+..+|.+|...|++++|+.+|++++.+.     | .-+.++.++|.+|. .|++++|+.+|++++++.+..  
T Consensus        27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--   98 (150)
T 4ga2_A           27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----E-RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ--   98 (150)
T ss_dssp             HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC--
Confidence            44556677889999999999999999999999983     2 34678999999999 899999999999999986643  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhHccCcchHHHhHHHHHHHHHhhCC
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATF-LLRWGLAADKCNATNSQCKAYLSAIIVYLYAND  143 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd  143 (233)
                          ..++.++|.++...|++++|+.. +++++.+.      +....++...+.++...|+
T Consensus        99 ----~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~------P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           99 ----KDLVLKIAELLCKNDVTDGRAKYWVERAAKLF------PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             ----HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS------TTCHHHHHHHHHHHHTCCC
T ss_pred             ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHhCc
Confidence                35899999999999999988776 58999762      2334567777888877775

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.35  E-value=1.9e-11  Score=92.12  Aligned_cols=108  Identities=17%  Similarity=0.128  Sum_probs=91.7

Q ss_pred             CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHHHHhccHHHHHHH
Q 026767           44 RSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK------------EQMAFDLYRAATNVYIKLEKYADAATF  110 (233)
Q Consensus        44 ~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~------------~~~~~~~l~~lg~~~~~~g~~~~A~~~  110 (233)
                      +....+..+.+.|..+. .|++++|+.+|.+|+.+++....            ......++.++|.+|..+|+|++|+.+
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34567889999999999 89999999999999999765321            223446899999999999999999999


Q ss_pred             HHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          111 LLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       111 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      |++++.+      .+....+++.+|.++..+|++++|...|++++.+
T Consensus        86 ~~~al~~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           86 SSEVLKR------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhc------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            9999987      3345678999999999999999999999999854

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.33  E-value=2.3e-11  Score=109.61  Aligned_cols=131  Identities=9%  Similarity=-0.118  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .+.++.++|.+|...|++++|+.+|++|+++..      ....++.++|.++. .|++++|+++|++++++.+..     
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----   90 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-----   90 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----
Confidence            357899999999999999999999999998732      23678999999999 899999999999999986542     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh---CCHHHHHHHHHHhhc
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA---NDFKQAEKCYNDCSQ  156 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~---gd~~~A~~~~~~al~  156 (233)
                       ..++.++|.++..+|++++|+++|++++.+.      +....++.+++.++..+   |++++|...|++++.
T Consensus        91 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           91 -PGIALWLGHALEDAGQAEAAAAAYTRAHQLL------PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence             3588999999999999999999999999762      23356789999999999   999999999999983

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=8.1e-12  Score=109.02  Aligned_cols=136  Identities=12%  Similarity=0.098  Sum_probs=109.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHH
Q 026767           22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK---EQMAFDLYRAATNV   97 (233)
Q Consensus        22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~---~~~~~~~l~~lg~~   97 (233)
                      ++..+.++..+++.+....+..+....+.+++.+|.++. .|++++|+++|++|+++++....   ....+.++.++|.+
T Consensus        24 l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~  103 (472)
T 4g1t_A           24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV  103 (472)
T ss_dssp             TTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence            456677888888888877777777778899999999999 89999999999999999887642   22234689999999


Q ss_pred             HHHhccHHHHHHHHHHHHHHHhHccCc--chHHHhHHHHHHHHHhh--CCHHHHHHHHHHhhcC
Q 026767           98 YIKLEKYADAATFLLRWGLAADKCNAT--NSQCKAYLSAIIVYLYA--NDFKQAEKCYNDCSQV  157 (233)
Q Consensus        98 ~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~--gd~~~A~~~~~~al~~  157 (233)
                      |..+|+|++|+.+|++++.+.......  ...+.++.++|.+++..  ++|++|+.+|++++.+
T Consensus       104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~  167 (472)
T 4g1t_A          104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK  167 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            999999999999999999998876543  23466778888777665  5799999999999844

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.33  E-value=4.4e-11  Score=90.24  Aligned_cols=102  Identities=15%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ....+..+...|.++...|++++|+.+|++++.+..      ....++.++|.+|. .|++++|+.+|++++++.+..  
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--   78 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--   78 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Confidence            344566666666666666667777766666666532      12456666666666 566666666666666664432  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                          ..++.++|.++..+|++++|+.+|++++.+.
T Consensus        79 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           79 ----SKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                2456666666666666666666666666553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.33  E-value=8.2e-11  Score=83.70  Aligned_cols=122  Identities=16%  Similarity=0.062  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ....+..+..+|.++...|++++|+.+|++++....      ....++..+|.++. .|++++|+.+|++++.+.+..  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--   79 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--
Confidence            455678888999999999999999999999988732      12567888999988 799999999999999875432  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF  144 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~  144 (233)
                          ..++..+|.++...|++++|+.+|++++.+.      +....++..++.++...|++
T Consensus        80 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           80 ----SKAYGRMGLALSSLNKHVEAVAYYKKALELD------PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHHhcC
Confidence                3578889999999999999999999988762      22245678888888888765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.32  E-value=3.2e-11  Score=86.50  Aligned_cols=121  Identities=9%  Similarity=-0.034  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ......++..+|.++...|++++|+.+|++++....      ....++.++|.++. .|++++|+.+|++++++.+..  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--   83 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--   83 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--
Confidence            345677889999999999999999999999987632      22678889999998 799999999999999875531  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCC
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAND  143 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd  143 (233)
                          ..++.++|.++...|++++|+.+|++++.+.      +....++..++.++..+|+
T Consensus        84 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           84 ----IKGYTRKAAALEAMKDYTKAMDVYQKALDLD------SSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------GGGTHHHHHHHHHHHHHTC
T ss_pred             ----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHhcC
Confidence                3578899999999999999999999998762      2234567788888877764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.31  E-value=1.2e-10  Score=92.70  Aligned_cols=142  Identities=8%  Similarity=-0.115  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-------------------hCCHHHHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-------------------DAVPEDAI   68 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-------------------~g~~~~A~   68 (233)
                      ...++..+|.+|...|++++|+..|++++..+-..-   ....++..+|.++.                   .|++++|+
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~---~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  116 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF  116 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---THHHHHHHHHHHHHHHHC--------------CCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH
Confidence            457889999999999999999999999998874332   24456666776654                   37899999


Q ss_pred             HHHHHHHHHHHhcCChHHH-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767           69 QLYTDACIMLEEDDKEQMA-----------FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV  137 (233)
Q Consensus        69 ~~~~~Al~~~~~~g~~~~~-----------~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~  137 (233)
                      ..|+++++.++.......+           +.....+|.++...|+|.+|+..|+++++.+..   ......++..+|.+
T Consensus       117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~l~~~  193 (225)
T 2yhc_A          117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD---TQATRDALPLMENA  193 (225)
T ss_dssp             HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC---CCccHHHHHHHHHH
Confidence            9999999998877643321           112257899999999999999999999976432   33445788999999


Q ss_pred             HHhhCCHHHHHHHHHHhh
Q 026767          138 YLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       138 ~~~~gd~~~A~~~~~~al  155 (233)
                      +..+|++++|++.++++.
T Consensus       194 ~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          194 YRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHH
Confidence            999999999999999876

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.31  E-value=8.6e-11  Score=92.46  Aligned_cols=126  Identities=13%  Similarity=0.113  Sum_probs=101.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026767           14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYR   92 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~   92 (233)
                      ++|.+|...|++++|+.+|++++.+.     | .-..++.++|.++. .|++++|+.+|++++++.+..      ..++.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~  126 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA-----P-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANI  126 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH
Confidence            39999999999999999999999984     2 34678999999999 899999999999999987643      35889


Q ss_pred             HHHHHHHHhcc--HHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           93 AATNVYIKLEK--YADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        93 ~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      ++|.+|...|+  ...+...|.+++       .+.....+++..|.++...|++.+|+.+|++++.+.
T Consensus       127 ~lg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          127 FLGNYYYLTAEQEKKKLETDYKKLS-------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHh-------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            99999987764  445566666553       223333467888999999999999999999998553

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.31  E-value=4.1e-11  Score=105.73  Aligned_cols=131  Identities=8%  Similarity=-0.051  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGR---------SQPASDALAKAARALE-DAVPEDAIQLYTDACI   76 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~---------~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~   76 (233)
                      ..+..+.+.|++|...|++++|+.+|++|+.+......         ....+.++.++|.+|. .|++++|+.+|.+|++
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            45566777777777777777777777777776543321         1112455666666666 5666666666666666


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHH
Q 026767           77 MLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEK  149 (233)
Q Consensus        77 ~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~  149 (233)
                      +.+..      ..++.++|.+|..+|+|++|+.+|++++.+.      +....++..++.++...|++.+|.+
T Consensus       346 ~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          346 LDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN------PQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            54431      2456666666666666666666666666431      1222345566666666666665554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.30  E-value=1.3e-10  Score=82.80  Aligned_cols=105  Identities=20%  Similarity=0.159  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-CCh
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-DKE   84 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-g~~   84 (233)
                      ..+..+..+|.++...|++++|+.+|++++....      ....++.++|.++. .|++++|+.+|++++.+.+.. ++.
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   75 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDP------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence            4578899999999999999999999999998742      23578899999999 899999999999999999875 344


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      .....++.++|.++...|++++|+.+|++++.+
T Consensus        76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            444678999999999999999999999999975

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.30  E-value=4.2e-11  Score=99.09  Aligned_cols=162  Identities=9%  Similarity=-0.069  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ...+...|..+...|++++|+..|++++.+.-      ....++..+|.++. .|++++|+..|++++...+.   .   
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~---~---  184 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSN------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD---T---  184 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS---H---
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc---h---
Confidence            45678899999999999999999999998752      23578999999999 89999999999999876542   1   


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCchHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRSDQN  166 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~~e~  166 (233)
                      .......+..+...++.++|+..|++++..      .+....+++++|.++...|++++|+..|++++.. +.+   .+.
T Consensus       185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---~~~  255 (287)
T 3qou_A          185 RYQGLVAQIELLXQAADTPEIQQLQQQVAE------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---ADG  255 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG---GGG
T ss_pred             HHHHHHHHHHHHhhcccCccHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---ccc
Confidence            235566777788999999999999999975      3344567899999999999999999999999844 433   345


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          167 RCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .+...|+.++ ..|+.+.+...+++.
T Consensus       256 ~a~~~l~~~~~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          256 QTRXTFQEILAALGTGDALASXYRRQ  281 (287)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            6778889888 689888888877765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.30  E-value=2.3e-11  Score=112.41  Aligned_cols=154  Identities=16%  Similarity=0.029  Sum_probs=126.7

Q ss_pred             HHcCCHHHHHHHHHHHHH-HHHHc-CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 026767           20 KELHNWREVADFYRKASE-LYNEC-GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATN   96 (233)
Q Consensus        20 ~~~g~~~eA~~~~~~A~~-l~~~~-g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~   96 (233)
                      ...|++++|++.|+++++ .+... ......+.++..+|.++. .|++++|+..|++++++.+..      ..++.++|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~  475 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR------WRLVWYRAV  475 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHHHHH
Confidence            458999999999999982 11111 112345678899999999 899999999999999987653      358999999


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHH
Q 026767           97 VYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRSDQNRCATKLISA  175 (233)
Q Consensus        97 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~~e~~~l~~L~~a  175 (233)
                      ++..+|+|++|+..|++++.+.      +....+++++|.++..+|++++ +..|++++.+ +..     ..+...++.+
T Consensus       476 ~~~~~g~~~~A~~~~~~al~l~------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-----~~a~~~lg~~  543 (681)
T 2pzi_A          476 AELLTGDYDSATKHFTEVLDTF------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-----ISAAFGLARA  543 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-----HHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-----HHHHHHHHHH
Confidence            9999999999999999999862      3345678999999999999999 9999999854 322     4578899998


Q ss_pred             H-hcCCHHHHHHHHhhc
Q 026767          176 Y-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       176 ~-~~gd~~~a~~~~~~~  191 (233)
                      + ..|++++|...++++
T Consensus       544 ~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             HHHTTCHHHHHHHHHTS
T ss_pred             HHHcCCHHHHHHHHHhh
Confidence            8 899999999999999

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.30  E-value=5e-11  Score=89.92  Aligned_cols=103  Identities=19%  Similarity=0.138  Sum_probs=91.0

Q ss_pred             CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           43 GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        43 g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      ++....+..+..+|.++. .|++++|+.+|++++++.+..      ..++.++|.++..+|+|++|+.+|++++.+.   
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---   75 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVD---   75 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Confidence            455678899999999999 899999999999999987653      3689999999999999999999999999873   


Q ss_pred             cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          122 NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       122 ~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                         +....+++++|.++..+|++++|+.+|++++.+
T Consensus        76 ---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           76 ---PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence               234678999999999999999999999999854

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=6.2e-11  Score=85.23  Aligned_cols=117  Identities=13%  Similarity=0.089  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..+..+.+.|..+. .|++++|+.+|++++++.+..      ..++.++|.++..+|+|++|+..|++++.+.      +
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p   69 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD------P   69 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------C
Confidence            35678999999999 899999999999999986643      3689999999999999999999999999862      3


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC-CC-CCchHHHHHHHHHHH
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD-AF-LRSDQNRCATKLISA  175 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-~~-~~~~e~~~l~~L~~a  175 (233)
                      ....+++.+|.++..+|++++|+..|++++.+. .+ .......+...|..+
T Consensus        70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence            346689999999999999999999999998442 22 122334444444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.28  E-value=6.6e-11  Score=101.77  Aligned_cols=132  Identities=12%  Similarity=0.013  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHH
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECG----------RSQPASDALAKAARALE-DAVPEDAIQLYTDA   74 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g----------~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~A   74 (233)
                      ...+..+.+.|+.+...|++++|+.+|++|+.+.....          .....+.++.++|.++. .|++++|+.+|++|
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34567778888888888888888888888888665431          23345667777777777 67777777777777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHH
Q 026767           75 CIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEK  149 (233)
Q Consensus        75 l~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~  149 (233)
                      +++.+.      -..++.++|.+|..+|+|++|+..|++++.+.      +....++..++.++...+++.++.+
T Consensus       300 l~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~------P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          300 LEIDPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA------PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            765432      13466777777777777777777777777652      1123345666666666666665544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.28  E-value=1.3e-10  Score=86.67  Aligned_cols=131  Identities=15%  Similarity=0.131  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..+..+..+|.++. .|++++|+.+|++++.+.+..      ..++.++|.++...|++++|+.+|++++.+.      +
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------~   78 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELD------K   78 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------c
Confidence            56788999999999 899999999999999986542      3588999999999999999999999999863      2


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ....++..+|.++...|++++|..+|++++.....  .........++..+ ..|++++|.......
T Consensus        79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            33567899999999999999999999999854321  22333334444445 678888888877765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.28  E-value=2e-10  Score=95.62  Aligned_cols=167  Identities=8%  Similarity=-0.006  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      -...+.+.|.++...|++++|...|++++.+.     +.....++.+.|.++. .|++++|+..|++|++..+..     
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-----  167 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-----  167 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-----
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----
Confidence            34578888899989999999999999998752     2211137888898888 799999999999998765422     


Q ss_pred             HHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchH
Q 026767           87 AFDLYRAATNVYI-KLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQ  165 (233)
Q Consensus        87 ~~~~l~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e  165 (233)
                       ..++...+.+.. ..|++++|+.+|++++...-      .....+..++.++...|++++|+..|++++....+.....
T Consensus       168 -~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~  240 (308)
T 2ond_A          168 -HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS  240 (308)
T ss_dssp             -THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred             -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence             123444444433 36999999999999998642      2346778899999999999999999999986432222223


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          166 NRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       166 ~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..+...++... ..|+.+.+....+++
T Consensus       241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          241 GEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666667666 689999999888887

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.28  E-value=4.5e-11  Score=91.38  Aligned_cols=160  Identities=9%  Similarity=-0.011  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      ..+...|..+...|++++|+.+|++++.+.-      ....++..+|.++. .|++++|+..|++++...+   +..   
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~---   74 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ------SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNS---   74 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH------TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChH---
Confidence            4567788899999999999999999998763      34678999999999 8999999999999987655   211   


Q ss_pred             HHHHHHHHH-HHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCchHH
Q 026767           89 DLYRAATNV-YIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRSDQN  166 (233)
Q Consensus        89 ~~l~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~~e~  166 (233)
                       ....++.+ +...++..+|+..|++++.+      .+....+++.+|.++...|++++|+..|++++.. +.+   .+.
T Consensus        75 -~~~~~~~~~~~~~~~~~~a~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~  144 (176)
T 2r5s_A           75 -YKSLIAKLELHQQAAESPELKRLEQELAA------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDG  144 (176)
T ss_dssp             -HHHHHHHHHHHHHHTSCHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTT
T ss_pred             -HHHHHHHHHHHhhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChH
Confidence             22223333 22334455689999999875      2334567899999999999999999999999854 332   223


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          167 RCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .+...|+.++ ..|+.+.+...++++
T Consensus       145 ~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          145 EVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            5677888888 789999999888876

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.27  E-value=8.1e-11  Score=91.85  Aligned_cols=130  Identities=9%  Similarity=0.010  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..+..+.++|.++. .|++++|+.+|++++.      .   ...++.++|.++...|++++|+.+|++++.+.      +
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~   68 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------K   68 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------c
Confidence            35566788999999 7999999999999951      1   13589999999999999999999999999763      2


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCC------------CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAF------------LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~------------~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ....++.++|.++...|++++|+..|++++.....            .......++..++.++ ..|+.+.|...++++
T Consensus        69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34568899999999999999999999999854321            1234567889999988 899999999999998

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.26  E-value=3.5e-10  Score=79.70  Aligned_cols=119  Identities=16%  Similarity=0.137  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ...+.++..+|.++...|++++|+.+|++++....      ....++..+|.++. .|++++|+.+|++++.+.+..   
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---   76 (125)
T 1na0_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---   76 (125)
T ss_dssp             -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---
Confidence            34466777778887778888888888888776531      12456777777777 678888888888777664321   


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN  142 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g  142 (233)
                         ..++..+|.++...|++++|+.+|++++.+.      +....++..++.++...|
T Consensus        77 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           77 ---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhcc
Confidence               2466777777878888888888887777542      122345566666665543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.25  E-value=1.6e-10  Score=102.03  Aligned_cols=156  Identities=12%  Similarity=0.118  Sum_probs=117.0

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHH
Q 026767           24 NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK---------EQMAFDLYRA   93 (233)
Q Consensus        24 ~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~---------~~~~~~~l~~   93 (233)
                      ++++|+.+|+++....      ...+..+.+.|.++. .|++++|+.+|++|+++.+....         ......++.+
T Consensus       249 ~~~~A~~~~~~~~~~~------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  322 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEK------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN  322 (457)
T ss_dssp             EEECCCCGGGSCHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHHH------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence            3445555555554432      356788999999999 89999999999999999887531         2223578999


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 026767           94 ATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLI  173 (233)
Q Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~  173 (233)
                      +|.+|.++|+|++|+.+|++++.+.      +....+++++|.+|..+|++.+|+..|++++.+..    ....+...++
T Consensus       323 la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P----~~~~a~~~l~  392 (457)
T 1kt0_A          323 LAMCYLKLREYTKAVECCDKALGLD------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP----QNKAARLQIS  392 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHHHHHH
Confidence            9999999999999999999999862      33467899999999999999999999999996532    1234666777


Q ss_pred             HHH-hcCCHHHHHHHHhhccccc
Q 026767          174 SAY-TEGDVEEIKRVAQSSAISN  195 (233)
Q Consensus       174 ~a~-~~gd~~~a~~~~~~~~~~~  195 (233)
                      .++ ..++.+.+.....+-+|..
T Consensus       393 ~~~~~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          393 MCQKKAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            777 5777777766554444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.25  E-value=2.2e-10  Score=100.45  Aligned_cols=124  Identities=10%  Similarity=-0.115  Sum_probs=87.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHH-cCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHH
Q 026767           17 ALAKELHNWREVADFYRKASELYNE-CGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-D-KEQMAFDLY   91 (233)
Q Consensus        17 ~~~~~~g~~~eA~~~~~~A~~l~~~-~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-g-~~~~~~~~l   91 (233)
                      .-++.+|++++|+.+|++++.++.+ .|. ....+.++.++|.+|. +|++++|+.+|++++++++.. | +....+..+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3444578888888888888877654 232 4467778888888888 788888888888888888764 2 344455688


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhHc-c-CcchHHHhHHHHHHHHHh
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADKC-N-ATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~  140 (233)
                      +++|.+|..+|+|++|+.+|++|+++.+.. | +.+....++.+++.+...
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            888888888888888888888888887664 3 234445555666666543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.25  E-value=3.6e-10  Score=80.42  Aligned_cols=126  Identities=19%  Similarity=0.241  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767           50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC  128 (233)
Q Consensus        50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a  128 (233)
                      .++..+|.++. .|++++|+.+|++++...+..      ..++..+|.++...|++++|+.++++++...      +...
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~   69 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSA   69 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC------CCch
Confidence            46788999999 799999999999999874421      3578889999999999999999999998753      2234


Q ss_pred             HhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          129 KAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       129 ~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .++..+|.++...|++.+|...+++++....    ....++..++.++ ..|+++.|...+++.
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            5788999999999999999999999984431    1245677888888 899999999998876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.25  E-value=2.6e-10  Score=100.02  Aligned_cols=101  Identities=10%  Similarity=-0.016  Sum_probs=75.5

Q ss_pred             HcCCHHHHHHHHHHHHHHHHH-cCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNE-CGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-D-KEQMAFDLYRAAT   95 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~-~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-g-~~~~~~~~l~~lg   95 (233)
                      ..|+|++|+.+|++++.+..+ .|. ....+.+++++|.+|. +|++++|+.+|++++++++.. | +....+..++++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            467788888888888888765 333 4467778888888888 788888888888888887764 2 3444556788888


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           96 NVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        96 ~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      .+|..+|+|++|+.+|++|+++.+..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888877654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.24  E-value=2.4e-10  Score=85.37  Aligned_cols=102  Identities=13%  Similarity=0.040  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      .....++.+.|.++...|++++|+.+|++++.+.     + .-..++.++|.++. .|++++|+.+|++++.+.+...  
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--   89 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----H-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP--   89 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--
Confidence            3445667777777777777777777777777652     1 23456677777777 6777777777777777655322  


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD  119 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~  119 (233)
                          .++.++|.++..+|++++|+.+|++++.+..
T Consensus        90 ----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           90 ----RFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence                3567777777777777777777777776643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.23  E-value=1.1e-10  Score=96.32  Aligned_cols=165  Identities=12%  Similarity=0.021  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..+...|..+...|++++|+.+|++|+.+.     + ..+.++.++|.++. .|++++|+..|++++++.+..      
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----P-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Confidence            5788999999999999999999999999973     2 24678999999999 899999999999999875432      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch-HH------------------------HhHHHHHHHHHhhC
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS-QC------------------------KAYLSAIIVYLYAN  142 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a------------------------~~~~~lg~~~~~~g  142 (233)
                      ..++.++|.++..+|++++|+.+|++++.+......... ..                        .....++.  +..|
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~  149 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAA  149 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHH
Confidence            358899999999999999999999999988654321111 00                        01111222  2357


Q ss_pred             CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-h-cCCHHHHHHHHhhc
Q 026767          143 DFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-T-EGDVEEIKRVAQSS  191 (233)
Q Consensus       143 d~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~-~gd~~~a~~~~~~~  191 (233)
                      ++++|++.+++++....    ........+...+ . .+..+.+.+.+.++
T Consensus       150 ~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          150 ERERELEECQRNHEGHE----DDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             HHHHHHTTTSGGGTTTS----CHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhhcccc----chhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88888888888774421    2223333444433 2 35566677776655

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.22  E-value=2.5e-10  Score=85.24  Aligned_cols=101  Identities=14%  Similarity=0.081  Sum_probs=87.2

Q ss_pred             chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767           45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      ......++.++|.++. .|++++|+.+|++++.+.+..      ..++.++|.++..+|+|++|+.+|++++.+.     
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----   85 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-----   85 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----
Confidence            3456778899999999 899999999999999886542      3578899999999999999999999999762     


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                       +....+++++|.++..+|++++|+.+|++++.+
T Consensus        86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             233467899999999999999999999999844

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.21  E-value=1.4e-10  Score=90.13  Aligned_cols=154  Identities=10%  Similarity=0.042  Sum_probs=106.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-----
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-----   86 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-----   86 (233)
                      .+.+......|+++++.+.++....-      ....+..+.++|.++. .|++++|+.+|.+++.+.+...+...     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   81 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD   81 (198)
T ss_dssp             --------------CCCSGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            34445555567777766666544322      3456788999999999 89999999999999998776542211     


Q ss_pred             -----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC
Q 026767           87 -----AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL  161 (233)
Q Consensus        87 -----~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~  161 (233)
                           ...++.++|.++..+|+|++|+.+|++++.+.      +....+++.+|.++..+|++++|+..|++++.+... 
T Consensus        82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-  154 (198)
T 2fbn_A           82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-  154 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-
Confidence                 13689999999999999999999999999862      234578999999999999999999999999854321 


Q ss_pred             CchHHHHHHHHHHHH-hcCCHH
Q 026767          162 RSDQNRCATKLISAY-TEGDVE  182 (233)
Q Consensus       162 ~~~e~~~l~~L~~a~-~~gd~~  182 (233)
                         ...+...++.++ ..++..
T Consensus       155 ---~~~~~~~l~~~~~~~~~~~  173 (198)
T 2fbn_A          155 ---NLDIRNSYELCVNKLKEAR  173 (198)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHHHHHHH
Confidence               134455555555 334333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.21  E-value=2.3e-10  Score=87.06  Aligned_cols=121  Identities=12%  Similarity=0.108  Sum_probs=98.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-
Q 026767           20 KELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNV-   97 (233)
Q Consensus        20 ~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~-   97 (233)
                      ...|++++|+.++++++...     + ....++..+|.++. .|++++|+.+|++++.+.+..      ..++.++|.+ 
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l   88 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-----P-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVL   88 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-----C-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHH
Confidence            34688999999999999864     2 23578999999999 899999999999999998653      3578899999 


Q ss_pred             HHHhccH--HHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           98 YIKLEKY--ADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        98 ~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      +...|++  ++|+.+|++++.+.      +....++..+|.++...|++.+|...|++++...
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           89 YYQASQHMTAQTRAMIDKALALD------SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHTTTCCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHhcCCcchHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            8899999  99999999999762      2335678999999999999999999999998543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.21  E-value=5.3e-10  Score=79.53  Aligned_cols=106  Identities=13%  Similarity=0.098  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc-Cc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN-AT  124 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~  124 (233)
                      ..+.++..+|.++. .|++++|+.+|++++.+.+..      ..++.++|.++...|++++|+.+|++++.+..... ..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   75 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence            35778999999999 799999999999999986432      35789999999999999999999999999876542 22


Q ss_pred             chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      .....++..+|.++...|++.+|..+|++++...
T Consensus        76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            3336788999999999999999999999998553

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.21  E-value=2.7e-10  Score=94.80  Aligned_cols=162  Identities=14%  Similarity=0.070  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-HHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHH
Q 026767            9 AKHMESAAALAK-------ELHNW-------REVADFYRKASE-LYNECGRSQPASDALAKAARALE-DAVPEDAIQLYT   72 (233)
Q Consensus         9 a~~~~~~g~~~~-------~~g~~-------~eA~~~~~~A~~-l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~   72 (233)
                      ..++.+.|.++.       ..|++       ++|+..|++|+. +.     + .-..++.+.|.++. .|++++|+..|+
T Consensus        50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-----p-~~~~~~~~~~~~~~~~~~~~~A~~~~~  123 (308)
T 2ond_A           50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-----K-KNMLLYFAYADYEESRMKYEKVHSIYN  123 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            345667777665       35886       899999999988 42     2 34568899999999 799999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH-hhCCHHHHHHHH
Q 026767           73 DACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL-YANDFKQAEKCY  151 (233)
Q Consensus        73 ~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~gd~~~A~~~~  151 (233)
                      +++++.+...     ..++.++|.++.+.|++++|+..|++++...      +....++...+.+.. ..|++++|+..|
T Consensus       124 ~al~~~p~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          124 RLLAIEDIDP-----TLVYIQYMKFARRAEGIKSGRMIFKKAREDA------RTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             HHHTSSSSCT-----HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------TCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHhccccCc-----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9998644321     1278899999999999999999999998642      122445555555543 379999999999


Q ss_pred             HHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          152 NDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       152 ~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++++....    ....+...++..+ ..|+.+.|+..++++
T Consensus       193 ~~al~~~p----~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  229 (308)
T 2ond_A          193 ELGLKKYG----DIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHHT----TCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHhCC----CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99985421    2356778888887 789999999999999

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.21  E-value=6.5e-10  Score=98.28  Aligned_cols=152  Identities=16%  Similarity=0.137  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-----CCHHHHHHHHHHHHHHHH
Q 026767           10 KHMESAAALAKE----LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-----AVPEDAIQLYTDACIMLE   79 (233)
Q Consensus        10 ~~~~~~g~~~~~----~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-----g~~~~A~~~~~~Al~~~~   79 (233)
                      .++.++|.+|..    .+++++|+.+|++|++.    |+    ..++.++|.+|. .     +++++|+.+|++|++.  
T Consensus       256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--  325 (490)
T 2xm6_A          256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GN----SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--  325 (490)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TC----HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--
Confidence            455566666666    66777777777776542    33    346778888887 4     6899999999998864  


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh----hCCHHHHHHHHH
Q 026767           80 EDDKEQMAFDLYRAATNVYIKLE---KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY----ANDFKQAEKCYN  152 (233)
Q Consensus        80 ~~g~~~~~~~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~gd~~~A~~~~~  152 (233)
                        ++    ..++.++|.+|...|   ++++|+.+|+++++.        +...+++++|.+|..    .+++.+|..+|+
T Consensus       326 --~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  391 (490)
T 2xm6_A          326 --GD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR  391 (490)
T ss_dssp             --TC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             --CC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence              32    247888999998855   899999999999853        235678999999999    899999999999


Q ss_pred             HhhcCCCCCCchHHHHHHHHHHHH-h----cCCHHHHHHHHhhc
Q 026767          153 DCSQVDAFLRSDQNRCATKLISAY-T----EGDVEEIKRVAQSS  191 (233)
Q Consensus       153 ~al~~~~~~~~~e~~~l~~L~~a~-~----~gd~~~a~~~~~~~  191 (233)
                      +++...      ...+...|+..| .    .+|.+.|...++++
T Consensus       392 ~A~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          392 KAAEQG------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHhCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            997532      256788899988 4    68999999999998

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.20  E-value=9.4e-10  Score=81.03  Aligned_cols=99  Identities=11%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ....+...|.++...|++++|+.+|++++.+.     + ....++.++|.++. .|++++|+.+|++++.+.+...    
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----   86 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-----H-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP----   86 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-----C-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----
Confidence            34455555555555666666666666655542     1 12344555566555 4666666666666655543321    


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                        .++.++|.++..+|++++|+.+|++++.+.
T Consensus        87 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           87 --RFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence              245555666666666666666666665543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.19  E-value=1.9e-10  Score=98.90  Aligned_cols=131  Identities=14%  Similarity=0.083  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD----------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWG  115 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g----------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al  115 (233)
                      ..+..+.++|..+. .|++++|+.+|++|+++.....          .......++.++|.++.++|+|++|+.+|++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            35677899999999 8999999999999999876641          233445799999999999999999999999999


Q ss_pred             HHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHH
Q 026767          116 LAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRV  187 (233)
Q Consensus       116 ~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~  187 (233)
                      .+      .+....+++.+|.++..+|++++|+..|++++.+...    ...+...|+.++ ..++.+++...
T Consensus       301 ~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~----~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          301 EI------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE----DKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             Hh------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            75      2345678999999999999999999999999854321    234556666666 45555555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.19  E-value=5.8e-10  Score=80.74  Aligned_cols=100  Identities=16%  Similarity=0.060  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..+..+|.++...|++++|+.+|++++.+..      ....++.++|.++. .|++++|+.+|++++.+.+..      
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence            56667777777777777777777777776632      12456777777777 677777777777777665431      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      ..++.++|.++..+|++++|+.+|++++.+...
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            246667777777777777777777777766544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.19  E-value=6.4e-12  Score=111.60  Aligned_cols=129  Identities=14%  Similarity=0.039  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ...+.++.++|.++...|++++|+.+|++|+++.     + ..+.++.++|.++. .|++++|+++|++|+++.+..   
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---   73 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN-----P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---   73 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---
Confidence            3456777888899999999999999999999983     2 23788999999999 899999999999999985432   


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH--HHhhCCHHHHHHHHH
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV--YLYANDFKQAEKCYN  152 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~--~~~~gd~~~A~~~~~  152 (233)
                         ..++.++|.+|..+|++++|+.+|++++.+...      ...++..++.+  +..+|++++|++.++
T Consensus        74 ---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           74 ---IKGYYRRAASNMALGKFRAALRDYETVVKVKPH------DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence               358999999999999999999999999986321      12345666666  888999999999999

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.18  E-value=1.4e-09  Score=96.21  Aligned_cols=123  Identities=15%  Similarity=0.111  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-----CCHHHHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKE----LHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-----AVPEDAIQLYTDACIMLE   79 (233)
Q Consensus         9 a~~~~~~g~~~~~----~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-----g~~~~A~~~~~~Al~~~~   79 (233)
                      +.++..+|.+|..    .+++++|+.+|++|++.    |+    +.++..+|.+|..     +++++|+++|++|++.  
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  108 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GY----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--  108 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence            4566667777766    66777777777777642    32    3455566666552     4666666666666542  


Q ss_pred             hcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh----hCCHHHHHHHH
Q 026767           80 EDDKEQMAFDLYRAATNVYIK----LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY----ANDFKQAEKCY  151 (233)
Q Consensus        80 ~~g~~~~~~~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~gd~~~A~~~~  151 (233)
                        |+    ..++.++|.+|..    .+++++|+.+|+++++.        +...++.++|.+|..    .+++.+|.+.|
T Consensus       109 --~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  174 (490)
T 2xm6_A          109 --GL----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--------GRDSGQQSMGDAYFEGDGVTRDYVMAREWY  174 (490)
T ss_dssp             --TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             --CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence              21    1345556666655    55666666666665431        123344555555554    45555555555


Q ss_pred             HHhh
Q 026767          152 NDCS  155 (233)
Q Consensus       152 ~~al  155 (233)
                      ++++
T Consensus       175 ~~a~  178 (490)
T 2xm6_A          175 SKAA  178 (490)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.18  E-value=3.4e-10  Score=89.38  Aligned_cols=139  Identities=16%  Similarity=0.066  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc--
Q 026767           26 REVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE--  102 (233)
Q Consensus        26 ~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g--  102 (233)
                      .+|+.+|+++.+.    |+    +.++.++|.+|. .+++++|+.+|++|++.    |+    ..++.++|.+|.. +  
T Consensus         3 ~eA~~~~~~aa~~----g~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~-~g~   65 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----GD----RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIR-NPQ   65 (212)
T ss_dssp             -CTTHHHHHHHHT----TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTS-STT
T ss_pred             chHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHc-CCC
Confidence            4678888888864    44    567899999999 79999999999999864    33    3678999999998 7  


Q ss_pred             --cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh----hCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 026767          103 --KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY----ANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY  176 (233)
Q Consensus       103 --~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~  176 (233)
                        ++++|+.+|+++++.        +...+++++|.+|..    .+|+.+|+.+|++++.....  .....+...|+..|
T Consensus        66 ~~~~~~A~~~~~~A~~~--------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~--~~~~~a~~~Lg~~y  135 (212)
T 3rjv_A           66 QADYPQARQLAEKAVEA--------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES--DAAVDAQMLLGLIY  135 (212)
T ss_dssp             SCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS--HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC--cchHHHHHHHHHHH
Confidence              999999999999642        345678999999998    89999999999999754310  12367888999988


Q ss_pred             -h----cCCHHHHHHHHhhc
Q 026767          177 -T----EGDVEEIKRVAQSS  191 (233)
Q Consensus       177 -~----~gd~~~a~~~~~~~  191 (233)
                       .    .+|.++|...++++
T Consensus       136 ~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A          136 ASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHTSSSSCCHHHHHHHHHHH
T ss_pred             HcCCCCCCCHHHHHHHHHHH
Confidence             5    67999999999998

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.18  E-value=3.7e-10  Score=80.80  Aligned_cols=116  Identities=16%  Similarity=0.118  Sum_probs=94.2

Q ss_pred             chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767           45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      .......+..+|.++. .|++++|+.+|++++++.+..      ..++.++|.++...|++++|+.+|++++.+.     
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----   80 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLE-----   80 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-----
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----
Confidence            4456788999999999 899999999999999875432      3689999999999999999999999999762     


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY  176 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~  176 (233)
                       +....++..+|.++...|++++|+.+|++++....    ....+...++.++
T Consensus        81 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~  128 (133)
T 2lni_A           81 -PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS----SCKEAADGYQRCM  128 (133)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG----GGTHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC----CchHHHHHHHHHH
Confidence             23456789999999999999999999999984431    1234555666655

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.17  E-value=3.2e-10  Score=83.61  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=86.6

Q ss_pred             chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767           45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      .......+.++|.++. .|++++|+.+|++++.+.+..      ..++..+|.++..+|+|++|+.+|++++.+.     
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----   82 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMD-----   82 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----
Confidence            3456778889999999 899999999999999876542      3578899999999999999999999999862     


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                       +....+++++|.++..+|++++|+..|++++.+
T Consensus        83 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           83 -INEPRFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             233457899999999999999999999999844

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.17  E-value=1.1e-09  Score=96.28  Aligned_cols=150  Identities=16%  Similarity=0.121  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-----CCHHHHHHHHHHHHHHHHhcC
Q 026767           11 HMESAAALAKELH---NWREVADFYRKASELYNECGRSQPASDALAKAARALED-----AVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus        11 ~~~~~g~~~~~~g---~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-----g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      ++.++|.+|...|   ++++|+.+|++|++.    |+.  .+..+.++|.+|..     +++++|+.+|++|+   .  |
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~--~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~--g  246 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTV--TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P--G  246 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCS--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G--G
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCH--HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C--C
Confidence            6788888888888   888999999888753    433  34456777877773     47788888888876   2  2


Q ss_pred             ChHHHHHHHHHHHHH-H--HHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC-----CHHHHHHHHHHh
Q 026767           83 KEQMAFDLYRAATNV-Y--IKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN-----DFKQAEKCYNDC  154 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-----d~~~A~~~~~~a  154 (233)
                      +    ..++.++|.+ +  ...+++++|+.+|+++++.        +...+++++|.+|. .|     |+.+|...|+++
T Consensus       247 ~----~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A  313 (452)
T 3e4b_A          247 Y----PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA  313 (452)
T ss_dssp             S----THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred             C----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence            2    2467777777 3  4567888888888877632        13445667777776 45     777777777776


Q ss_pred             hcCCCCCCchHHHHHHHHHHHHhcC-----CHHHHHHHHhhc
Q 026767          155 SQVDAFLRSDQNRCATKLISAYTEG-----DVEEIKRVAQSS  191 (233)
Q Consensus       155 l~~~~~~~~~e~~~l~~L~~a~~~g-----d~~~a~~~~~~~  191 (233)
                      .  +     +...+...||..|..|     |.++|...++++
T Consensus       314 a--~-----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  348 (452)
T 3e4b_A          314 V--G-----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTA  348 (452)
T ss_dssp             T--T-----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred             h--C-----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            5  2     1234445555555333     555555555554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.17  E-value=6.2e-10  Score=80.61  Aligned_cols=98  Identities=14%  Similarity=0.021  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch
Q 026767           48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS  126 (233)
Q Consensus        48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  126 (233)
                      .+..+..+|.++. .|++++|+.+|++++.+.+..      ..++.++|.++..+|++++|+.+|++++.+.      +.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~   75 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELD------GQ   75 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------ch
Confidence            4678899999999 899999999999999986642      3589999999999999999999999999763      23


Q ss_pred             HHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          127 QCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       127 ~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ...+++.+|.++...|++.+|+..|++++.+
T Consensus        76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4568899999999999999999999999843

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.16  E-value=8.7e-10  Score=96.72  Aligned_cols=98  Identities=9%  Similarity=0.087  Sum_probs=86.7

Q ss_pred             hCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc--cCcchHHHhHHHHHH
Q 026767           61 DAVPEDAIQLYTDACIMLEED-D-KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC--NATNSQCKAYLSAII  136 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~-g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~  136 (233)
                      .|+|++|+..|++++++.+.. | +....+.+++++|.+|..+|+|++|+.++++++.+.++.  .+.+..+..+++||.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            589999999999999999874 3 334556799999999999999999999999999998875  345778889999999


Q ss_pred             HHHhhCCHHHHHHHHHHhhcCC
Q 026767          137 VYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       137 ~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      +|..+|++++|+..|++|+.+.
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHH
Confidence            9999999999999999998654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.16  E-value=1.2e-09  Score=90.52  Aligned_cols=129  Identities=8%  Similarity=0.062  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH----HHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAA----RALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg----~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ..++..+|.+|..+|++++|+..|++++.+.     +...   +.+++    .++. .|++++|+..|+++++.++..  
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~---~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~--  199 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT---LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT--  199 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC--
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH---HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc--
Confidence            3578889999999999999999999999873     2211   22222    2333 589999999999999985531  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHH-HHHHHHHhhcC
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQ-AEKCYNDCSQV  157 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~-A~~~~~~al~~  157 (233)
                          ..+++++|.++..+|++++|+.+|++++.+      .+..+.++.++|.++...|++.+ +.+++++++.+
T Consensus       200 ----~~~~~~la~~~~~~g~~~eA~~~l~~al~~------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          200 ----LLLLNGQAACHMAQGRWEAAEGVLQEALDK------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence                358999999999999999999999999976      23445679999999999999976 57888998843

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.15  E-value=6.3e-10  Score=97.52  Aligned_cols=127  Identities=13%  Similarity=-0.040  Sum_probs=103.1

Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc--cCcc
Q 026767           50 DALAKAARALEDAVPEDAIQLYTDACIMLEED-D-KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC--NATN  125 (233)
Q Consensus        50 ~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~-g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  125 (233)
                      ..+..+..+..+|++++|+..|++++++.... | +....+.+++++|.+|..+|+|++|+.++++++.++++.  .+.+
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP  368 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence            34455555666899999999999999987653 3 333456799999999999999999999999999999875  4556


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC----CCCchHHHHHHHHHHHH
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA----FLRSDQNRCATKLISAY  176 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~----~~~~~e~~~l~~L~~a~  176 (233)
                      ..+..+++||.+|..+|++++|+..|++|+.+..    -+++....++..|..+.
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            7788899999999999999999999999985532    34566666777777665

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.15  E-value=1.9e-09  Score=76.48  Aligned_cols=120  Identities=18%  Similarity=0.141  Sum_probs=96.4

Q ss_pred             chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767           45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      ....+.++..+|.++. .|++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.++++++.+.     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----   76 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICID-----   76 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----
Confidence            3456788999999999 799999999999999885532      3578999999999999999999999999762     


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCC
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGD  180 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd  180 (233)
                       +....++..+|.++...|++++|...|++++....    ....+...++.++ ..|+
T Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           77 -PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP----DNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTT
T ss_pred             -ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHhc
Confidence             22356789999999999999999999999985431    1234556677666 4454

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.14  E-value=1.2e-09  Score=76.21  Aligned_cols=95  Identities=11%  Similarity=0.003  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..+...|.++...|++++|+.+|++++....      ....++.++|.++. .|++++|+.++++++++.+..      
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------   71 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------   71 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------
Confidence            34455555555555555555555555554421      11334455555555 455555555555555543221      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWG  115 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al  115 (233)
                      ..++.++|.++...|++++|+.+|++++
T Consensus        72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           72 GKGYSRKAAALEFLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            1344455555555555555555555554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.14  E-value=1.9e-09  Score=75.78  Aligned_cols=116  Identities=16%  Similarity=0.222  Sum_probs=91.5

Q ss_pred             chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767           45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      +...+.++..+|.++. .|++++|+.+|++++...+..      ..++..+|.++...|++++|+.+|++++...     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----   73 (125)
T 1na0_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----   73 (125)
T ss_dssp             --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----
Confidence            4455788999999999 799999999999999875432      3578899999999999999999999998752     


Q ss_pred             cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 026767          124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY  176 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~  176 (233)
                       +....++..+|.++...|++++|...|++++....    ....+...++.++
T Consensus        74 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~  121 (125)
T 1na0_A           74 -PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----NNAEAKQNLGNAK  121 (125)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHH
Confidence             22345788999999999999999999999984431    1234555566554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.12  E-value=4.1e-09  Score=73.37  Aligned_cols=99  Identities=18%  Similarity=0.195  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch
Q 026767           48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS  126 (233)
Q Consensus        48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  126 (233)
                      .+..+..+|.++. .|++++|+.+|++++...+..      ..++.++|.++...|++++|+.++++++.+.      +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~   70 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------PD   70 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TT
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------cc
Confidence            4677889999999 799999999999999886542      3578999999999999999999999999762      22


Q ss_pred             HHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          127 QCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       127 ~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      ...++..+|.++...|++++|...|++++...
T Consensus        71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            35678999999999999999999999998543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.11  E-value=6e-10  Score=80.28  Aligned_cols=93  Identities=11%  Similarity=-0.036  Sum_probs=62.6

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKA  130 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~  130 (233)
                      +..+|.++. .|++++|+..|++++++.+..      ..++..+|.++...|++++|+.+|++++.+.      +....+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~~   87 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIAV   87 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHH
Confidence            455666666 677777777777777765532      2466677777777777777777777777651      222345


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767          131 YLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus       131 ~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      +..+|.++...|++++|+..|++++.
T Consensus        88 ~~~la~~~~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           88 HAALAVSHTNEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            67777777777777777777777763

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.09  E-value=5.3e-10  Score=80.55  Aligned_cols=97  Identities=14%  Similarity=0.048  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ...+...|.++...|++++|+.+|++++.+.     + .-+.++..+|.++. .|++++|+.+|++|+++.+..      
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------   84 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-----P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------   84 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence            3456778899999999999999999999874     2 24678899999999 899999999999999987653      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ..++.++|.++...|++++|+.+|++++.+
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           85 IAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            247899999999999999999999999865

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=3.5e-09  Score=77.14  Aligned_cols=100  Identities=13%  Similarity=-0.029  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..+...|..+...|++++|+.+|++++.+.   .+......++.++|.++. .|++++|+.+|++++.+.+..      
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------   98 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------   98 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence            4555556666666666666666666665432   111123455555555555 456666666665555553321      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ..++.++|.++...|++++|+.+|++++.+
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            234555555555556666666555555543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.09  E-value=6.1e-11  Score=100.59  Aligned_cols=117  Identities=12%  Similarity=0.004  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ...+..+.+.|+.+...|++++|+.+|++|+.+....     .         .+. .+++.++...+.            
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~-----~---------~~~~~~~~~~~~~~l~------------  229 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD-----F---------MFQLYGKYQDMALAVK------------  229 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH-----H---------HHTCCHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-----h---------hhhhcccHHHHHHHHH------------
Confidence            4567777788888888888888888888887764211     0         112 233333322211            


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                         ..++.++|.+|..+|+|++|+.+|++++.+.      +....+++++|.+|..+|++++|+..|++++.+
T Consensus       230 ---~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          230 ---NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             ---THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               1366777777777777777777777777642      233456777777777777777777777777744

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.08  E-value=2.4e-09  Score=76.61  Aligned_cols=103  Identities=15%  Similarity=0.004  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      .++.+.|.++...|++++|+.+|++++..+.   +......++..+|.++. .|++++|+.+|++++...+....   ..
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~   76 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYP---NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AA   76 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cH
Confidence            3466788888889999999999998887653   23334577888999988 79999999999999887765432   23


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      .++..+|.++..+|++++|+.+|++++...
T Consensus        77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            578889999999999999999999888754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.07  E-value=4.6e-10  Score=85.72  Aligned_cols=131  Identities=9%  Similarity=0.012  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      -..++..+|.++...|++++|+.+|++++....   ++    ..+...+.+..  .++..+|+..|++++++.+..    
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~----~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~----  107 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DN----SYKSLIAKLELHQQAAESPELKRLEQELAANPDN----  107 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC----
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---Ch----HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC----
Confidence            457889999999999999999999999876542   21    22222333322  334446899999999886642    


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                        ..++.++|.++...|++++|+.+|++++..    ........++..+|.++..+|++++|...|++++
T Consensus       108 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          108 --FELACELAVQYNQVGRDEEALELLWNILKV----NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence              357899999999999999999999999854    2222334578999999999999999999999986

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.04  E-value=1e-10  Score=81.52  Aligned_cols=96  Identities=10%  Similarity=-0.039  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +.++.++|.++...|++++|+.+|++|+.+..      ....++.++|.++. .|++++|+.+|++++++.+..++....
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence            45556666666666666666666666665521      12445556666666 566666666666666655555444444


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATF  110 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~  110 (233)
                      ..++..+|.++..+|+++.|+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhH
Confidence            45555666666655555554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.03  E-value=3.6e-09  Score=75.66  Aligned_cols=101  Identities=9%  Similarity=-0.017  Sum_probs=84.3

Q ss_pred             HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767           51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK  129 (233)
Q Consensus        51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~  129 (233)
                      ++.++|.++. .|++++|+..|++++...+...   ....++..+|.++...|+|++|+.+|++++....   +......
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV---YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP---THDKAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC---CCcccHH
Confidence            4677888888 7999999999999998876543   2235788999999999999999999999997632   2223366


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      +++.+|.++..+|++++|...|++++..
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7899999999999999999999999843

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.03  E-value=6.8e-10  Score=94.12  Aligned_cols=112  Identities=16%  Similarity=0.138  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..+..+.+.|.++. .|++++|+.+|++|+.+.+...              .+...+++.++...+.             
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------------~~~~~~~~~~~~~~l~-------------  229 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------------MFQLYGKYQDMALAVK-------------  229 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------------HHTCCHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------------hhhhcccHHHHHHHHH-------------
Confidence            45677888999998 7999999999999998765321              1234555555543321             


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                        ..+++++|.+++.+|++.+|+.+|++++.+..    ....++..++.++ ..|+++.|...++++
T Consensus       230 --~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~a~~~~g~~~~A~~~l~~a  290 (338)
T 2if4_A          230 --NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE----KNPKALFRRGKAKAELGQMDSARDDFRKA  290 (338)
T ss_dssp             --THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              23789999999999999999999999985431    2357888999999 899999999999999

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.03  E-value=1.3e-10  Score=81.03  Aligned_cols=100  Identities=10%  Similarity=0.035  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch
Q 026767           48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS  126 (233)
Q Consensus        48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  126 (233)
                      .+.++.++|.++. .|++++|+.+|++++++.+..      ..++.++|.++..+|++++|+.+|++++.+....+....
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            4677889999999 799999999999999986542      357889999999999999999999999976444333334


Q ss_pred             HHHhHHHHHHHHHhhCCHHHHHHHHHH
Q 026767          127 QCKAYLSAIIVYLYANDFKQAEKCYND  153 (233)
Q Consensus       127 ~a~~~~~lg~~~~~~gd~~~A~~~~~~  153 (233)
                      ...++..+|.++...|++..|...+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            467788999999988877766655544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.01  E-value=1.5e-09  Score=74.99  Aligned_cols=98  Identities=11%  Similarity=0.047  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767           50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC  128 (233)
Q Consensus        50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a  128 (233)
                      .++..+|.++. .|++++|+.+|++++++.+..      ..++.++|.++...|++++|+.+|++++.+..    .....
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~   76 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIE----DEYNK   76 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC----CTTCH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc----ccchH
Confidence            45667888888 799999999999998875432      24778899999999999999999999986521    11145


Q ss_pred             HhHHHHHHHHHhh-CCHHHHHHHHHHhhcC
Q 026767          129 KAYLSAIIVYLYA-NDFKQAEKCYNDCSQV  157 (233)
Q Consensus       129 ~~~~~lg~~~~~~-gd~~~A~~~~~~al~~  157 (233)
                      .++..+|.++... |++.+|++++++++..
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           77 DVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            6788999999999 9999999999998743

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=8.7e-09  Score=74.99  Aligned_cols=102  Identities=21%  Similarity=0.100  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..+..+..+|..+. .|++++|+.+|++++++.+.   ......++.++|.++...|++++|+.+|++++.+.      +
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~   96 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------G   96 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------S
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------c
Confidence            45778899999999 89999999999999986542   22235689999999999999999999999999762      2


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ....+++.+|.++...|++++|..+|++++..
T Consensus        97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            23567899999999999999999999999854

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.00  E-value=7.2e-09  Score=76.41  Aligned_cols=109  Identities=15%  Similarity=0.141  Sum_probs=91.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-
Q 026767           23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK-  100 (233)
Q Consensus        23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~-  100 (233)
                      +++++|+.+|++|.+    .|++...      +|.+|. .+.+++|+++|++|++.    |+    ..++.++|.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~----~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACE----LNEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHH----TTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHc----CCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcC
Confidence            468899999999975    4666543      999999 57889999999999975    33    3688999999998 


Q ss_pred             ---hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh----hCCHHHHHHHHHHhhcC
Q 026767          101 ---LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY----ANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       101 ---~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~gd~~~A~~~~~~al~~  157 (233)
                         .+++.+|+.+|+++.+.        +...+..++|.+|..    .+|+.+|...|+++...
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL--------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence               89999999999999853        335678999999999    89999999999998743

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.99  E-value=2.1e-10  Score=101.81  Aligned_cols=127  Identities=17%  Similarity=0.132  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..+..+.++|.++. .|++++|+++|++|+++.+..      ..++.++|.++.++|+|++|+.+|++++.+      .+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p   71 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIEL------DK   71 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CT
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CC
Confidence            45566777888888 799999999999999985542      468999999999999999999999999975      23


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH--H-hcCCHHHHHHHHh
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISA--Y-TEGDVEEIKRVAQ  189 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a--~-~~gd~~~a~~~~~  189 (233)
                      ..+.++.++|.++..+|++++|++.|++++.+....  .  .+...++.+  + ..|++++|.+..+
T Consensus        72 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~--~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD--K--DAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--T--THHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H--HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            446789999999999999999999999998543211  1  233334443  4 6788888888877

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.99  E-value=2e-09  Score=88.99  Aligned_cols=131  Identities=11%  Similarity=-0.058  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +.++..+|.++...|++++|+.++++++...     +. ........+..+. .++.++|+..|+++++..+..      
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-----p~-~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~------  218 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-----QD-TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED------  218 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-----CS-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC------
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-----cc-hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc------
Confidence            4678889999999999999999999997653     22 2344556666666 688899999999999987743      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ..++.++|.++...|++++|+..|++++...    .......++.+++.++...|+.++|...|++++
T Consensus       219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~----p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          219 AALATQLALQLHQVGRNEEALELLFGHLRXD----LTAADGQTRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----cccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            2578999999999999999999999999752    223346778999999999999999999999986

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.98  E-value=2.5e-08  Score=88.90  Aligned_cols=166  Identities=9%  Similarity=0.021  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ...+...|.++...|++++|...|++++.+     ++.....++.+.|.++. .|++++|+..|++|++..+..      
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------  389 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------  389 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc------
Confidence            567788888888999999999999999875     23233468888998888 799999999999998753321      


Q ss_pred             HHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767           88 FDLYRAATNV-YIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN  166 (233)
Q Consensus        88 ~~~l~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~  166 (233)
                      ...+...+.+ +...|++++|..+|++++....      ....++..++.++...|++++|+..|++++.........-.
T Consensus       390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p------~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~  463 (530)
T 2ooe_A          390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG  463 (530)
T ss_dssp             THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred             hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence            1223333333 3468999999999999998642      23456788999999999999999999999854322222223


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          167 RCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       167 ~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .+....++.. ..||.+.+....+++
T Consensus       464 ~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          464 EIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555555544 579999999888887

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.98  E-value=1.1e-09  Score=77.90  Aligned_cols=89  Identities=12%  Similarity=0.072  Sum_probs=71.4

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI   99 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~   99 (233)
                      .+|++++|+.+|++|+.+.   .+......++.++|.++. .|++++|+.+|++++++.+..      ..++.++|.++.
T Consensus         2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~   72 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLY   72 (117)
T ss_dssp             -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHH
Confidence            3688999999999998852   112356788999999999 799999999999999987654      357889999999


Q ss_pred             HhccHHHHHHHHHHHHHHH
Q 026767          100 KLEKYADAATFLLRWGLAA  118 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~  118 (233)
                      .+|++++|+.+|++++...
T Consensus        73 ~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           73 NLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.94  E-value=3e-09  Score=75.60  Aligned_cols=88  Identities=11%  Similarity=0.034  Sum_probs=70.5

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~  140 (233)
                      .|++++|+.+|++++++..  +++ .-..++.++|.++..+|+|++|+.+|++++.+.      +....+++++|.++..
T Consensus         3 ~g~~~~A~~~~~~al~~~~--~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~   73 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGL--QGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------PNHQALRVFYAMVLYN   73 (117)
T ss_dssp             ----CCCHHHHHHHHSSCC--CHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCC--CCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHH
Confidence            4789999999999998621  012 234689999999999999999999999999763      2235688999999999


Q ss_pred             hCCHHHHHHHHHHhhcC
Q 026767          141 ANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       141 ~gd~~~A~~~~~~al~~  157 (233)
                      +|++++|+..|++++..
T Consensus        74 ~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           74 LGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999999844

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.93  E-value=2.6e-08  Score=88.80  Aligned_cols=162  Identities=14%  Similarity=0.078  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHH
Q 026767            9 AKHMESAAALAKE-------LHNWR-------EVADFYRKASE-LYNECGRSQPASDALAKAARALE-DAVPEDAIQLYT   72 (233)
Q Consensus         9 a~~~~~~g~~~~~-------~g~~~-------eA~~~~~~A~~-l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~   72 (233)
                      ...+.+.|.++..       .|+++       +|+..|++|+. +     .+ ....++...|.++. .|++++|+..|+
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-----~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~  345 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-----LK-KNMLLYFAYADYEESRMKYEKVHSIYN  345 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-----CS-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-----Cc-ccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4567777777765       79987       78888888875 3     22 34678899999999 799999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH-HHhhCCHHHHHHHH
Q 026767           73 DACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV-YLYANDFKQAEKCY  151 (233)
Q Consensus        73 ~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~-~~~~gd~~~A~~~~  151 (233)
                      +++++.+.  +   ...++.+++.++.+.|++++|+.+|++++...      +.....+...+.+ +...|++++|+..|
T Consensus       346 ~al~~~p~--~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~------~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          346 RLLAIEDI--D---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------RTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             HHHHSSSS--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT------TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHhCcccc--C---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc------CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            99986332  1   12478899999999999999999999998631      1223344444444 44689999999999


Q ss_pred             HHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          152 NDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       152 ~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++++....    ....+...+++.+ ..|+.+.|+..++++
T Consensus       415 e~al~~~p----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          415 ELGLKKYG----DIPEYVLAYIDYLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             HHHHHHHT----TCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHCC----CCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence            99985431    2246778888887 789999999999999

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.91  E-value=1.3e-09  Score=75.36  Aligned_cols=99  Identities=20%  Similarity=0.199  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..+..+|.++...|++++|+.+|++++.+..      ....++.++|.++. .|++++|+.+|++++++.+..    ..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~   75 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP------EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YN   75 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----ch
Confidence            35677899999999999999999999998742      23567899999999 899999999999999886541    11


Q ss_pred             HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKL-EKYADAATFLLRWGLA  117 (233)
Q Consensus        88 ~~~l~~lg~~~~~~-g~~~~A~~~~~~al~~  117 (233)
                      ..++.++|.++..+ |++++|++++++++..
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            35889999999999 9999999999998753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.91  E-value=1.3e-08  Score=84.15  Aligned_cols=132  Identities=12%  Similarity=-0.086  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF   88 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~   88 (233)
                      ......+.++...|++++|.+.|+..+.     +.+...  +....|.++. .+++++|+.+++++..+-    ++....
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d~~~~~  171 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP----DKFLAG  171 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----CHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC----CcccHH
Confidence            3445567888889999999999988765     445444  7788888888 799999999998664321    333345


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC-cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA-TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      .+...+|.++..+|++++|+.+|++++.    ... +.....+.+.+|.|+..+|+.++|...|++++.
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6889999999999999999999999872    111 222556789999999999999999999999873

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.89  E-value=5.2e-08  Score=85.59  Aligned_cols=169  Identities=12%  Similarity=0.045  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC---CHHHHHHHHHHHHHHHHhcCCh
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DA---VPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g---~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      +.++.++|.+|...+.+++++....+..... ..+++.    ++.++|.+|. .|   ++++|+.+|++|++.-..    
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a-~~~~~~----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~----  211 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAA-LNTTDI----CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV----  211 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH-TTTCTT----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS----
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HcCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH----
Confidence            3466677777777776665555422221111 234444    7899999999 78   999999999999864322    


Q ss_pred             HHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH-H--HhhCCHHHHHHHHHHhhcC
Q 026767           85 QMAFDLYRAATNVYIKL----EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV-Y--LYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~-~--~~~gd~~~A~~~~~~al~~  157 (233)
                        .+..+.++|.+|...    +++++|+.+|+++.         ++...+++++|.+ +  ...+|+.+|...|+++...
T Consensus       212 --~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~  280 (452)
T 3e4b_A          212 --TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA  280 (452)
T ss_dssp             --CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence              134568999999765    79999999999986         2335678999998 4  5789999999999999733


Q ss_pred             CCCCCchHHHHHHHHHHHHhcC-----CHHHHHHHHhhcccccchHHHHHHh
Q 026767          158 DAFLRSDQNRCATKLISAYTEG-----DVEEIKRVAQSSAISNLDHVIIKLA  204 (233)
Q Consensus       158 ~~~~~~~e~~~l~~L~~a~~~g-----d~~~a~~~~~~~~~~~ld~~~~~l~  204 (233)
                      .      ...+...||..|..|     |.++|...++++. ..-......|+
T Consensus       281 g------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg  325 (452)
T 3e4b_A          281 D------QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLG  325 (452)
T ss_dssp             T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHH
T ss_pred             C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHH
Confidence            2      356778899988777     9999999999988 33333344444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.89  E-value=8.1e-09  Score=85.04  Aligned_cols=96  Identities=15%  Similarity=0.013  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      +..+..+|.++. .|++++|+.+|++|+.+.+..      ..++.++|.++..+|++++|+..|++++.+      .+..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALEL------DGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC
Confidence            567889999999 899999999999999986532      358899999999999999999999999864      3344


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      ..+++++|.++..+|++++|+..|++++.
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            67889999999999999999999999984

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.88  E-value=5.4e-08  Score=94.77  Aligned_cols=158  Identities=13%  Similarity=0.090  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc------
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED------   81 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~------   81 (233)
                      ..+|.++|.++...|++++|+++|.+|       ++    ...+.++|.++. .|++++|+++|..|.+.-+..      
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence            356778888888888888888888776       33    445777888888 799999999998877544221      


Q ss_pred             -------CChHHHH--------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHH
Q 026767           82 -------DKEQMAF--------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQ  146 (233)
Q Consensus        82 -------g~~~~~~--------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~  146 (233)
                             ++.....        ..+.++|..+...|+|++|..+|.++              ..|..++.++..+|++++
T Consensus      1174 afaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A         1174 IFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred             HHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHH
Confidence                   2111000        13557899999999999999999885              367889999999999999


Q ss_pred             HHHHHHHhhcCCC-------------CCC---ch-----HHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          147 AEKCYNDCSQVDA-------------FLR---SD-----QNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       147 A~~~~~~al~~~~-------------~~~---~~-----e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      |.++++++.....             |.-   .+     ....+..++..| ..|.++++...++.+
T Consensus      1240 AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1240 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999863321             100   01     122556777777 689999999888777

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.88  E-value=2.3e-08  Score=75.76  Aligned_cols=98  Identities=11%  Similarity=0.039  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH-hh-hCCH--HHHHHHHHHHHHHHHhcCCh
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARA-LE-DAVP--EDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~-~~-~g~~--~~A~~~~~~Al~~~~~~g~~   84 (233)
                      +.++..+|.+|...|++++|+.+|++++.+...      ...++.++|.+ +. .|++  ++|+.+|++++++.+..   
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---  114 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE---  114 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---
Confidence            468899999999999999999999999998632      25678899999 76 7998  99999999999986532   


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                         ..++..+|.++...|++++|+.+|++++.+.
T Consensus       115 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          115 ---ITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence               2578899999999999999999999999764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.85  E-value=4.1e-08  Score=65.58  Aligned_cols=85  Identities=14%  Similarity=0.097  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767           46 QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT  124 (233)
Q Consensus        46 ~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  124 (233)
                      ...+.++.++|.++. .|++++|+.+|++++++.+..      ..++.++|.++...|++++|+.+|++++.+.      
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------   73 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------   73 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            345566777777777 677777777777777664321      2466777777777777777777777777642      


Q ss_pred             chHHHhHHHHHHHHHhhC
Q 026767          125 NSQCKAYLSAIIVYLYAN  142 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~g  142 (233)
                      +....++.++|.++...|
T Consensus        74 p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           74 PNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             TTCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            222445667777766544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.77  E-value=2.3e-08  Score=82.58  Aligned_cols=113  Identities=12%  Similarity=0.011  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC
Q 026767           83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR  162 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~  162 (233)
                      ....-. +...+|.++.+.++|++|+.+|++++.    ..++.....+++.+|.++..+|++.+|+.+|+++..-+. ..
T Consensus       131 ~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~-~P  204 (282)
T 4f3v_A          131 AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA-GE  204 (282)
T ss_dssp             TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT-TT
T ss_pred             cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC-Cc
Confidence            333344 677777888888888888888875532    122223355789999999999999999999999873321 02


Q ss_pred             chHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHH
Q 026767          163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIK  202 (233)
Q Consensus       163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~  202 (233)
                      .....+...++.++ +.|+.++|+..+++. ....- .+...
T Consensus       205 ~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          205 ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence            22445667777777 799999999999999 44443 44333

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.74  E-value=5.6e-07  Score=87.79  Aligned_cols=155  Identities=17%  Similarity=0.155  Sum_probs=105.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH-------HHHHcCCchHH---------HHHHHHHHHHhh-hCCHHHHHHHHHHHHH
Q 026767           14 SAAALAKELHNWREVADFYRKASE-------LYNECGRSQPA---------SDALAKAARALE-DAVPEDAIQLYTDACI   76 (233)
Q Consensus        14 ~~g~~~~~~g~~~eA~~~~~~A~~-------l~~~~g~~~~~---------a~~l~~lg~~~~-~g~~~~A~~~~~~Al~   76 (233)
                      .+|.++...|.++||...|+++..       ++...|+...+         ..+|.++|..+. .|++++|+..|.+|  
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence            367777777777777777766532       22234444433         346788999999 79999999999887  


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH-------------ccCc--------chHHHhHHHHH
Q 026767           77 MLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK-------------CNAT--------NSQCKAYLSAI  135 (233)
Q Consensus        77 ~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~--------~~~a~~~~~lg  135 (233)
                           ++.    ..+.++|.++.+.|+|++|+++|+.++..-+.             .+..        ......+.++|
T Consensus      1132 -----dD~----say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iG 1202 (1630)
T 1xi4_A         1132 -----DDP----SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVG 1202 (1630)
T ss_pred             -----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHH
Confidence                 332    46778999999999999999999887743311             0000        00112456788


Q ss_pred             HHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          136 IVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       136 ~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..+...|+|.+|..+|..+            .....++..+ ..|+++.|.++.+.+
T Consensus      1203 d~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1203 DRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             HHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            8888888888888888885            2344556655 567777777777766

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.72  E-value=1e-07  Score=63.60  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD   82 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g   82 (233)
                      ++...+.++..+|.++...|++++|+.+|++++.+..      ....++.++|.++. .|++++|+.+|++++++.+.. 
T Consensus         4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-   76 (91)
T 1na3_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-   76 (91)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-
Confidence            3445678999999999999999999999999998742      23568899999999 899999999999999986532 


Q ss_pred             ChHHHHHHHHHHHHHHHHhc
Q 026767           83 KEQMAFDLYRAATNVYIKLE  102 (233)
Q Consensus        83 ~~~~~~~~l~~lg~~~~~~g  102 (233)
                           ..++.++|.++..+|
T Consensus        77 -----~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           77 -----AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -----HHHHHHHHHHHHHHC
T ss_pred             -----HHHHHHHHHHHHhcC
Confidence                 257788888887654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.68  E-value=4.7e-08  Score=73.77  Aligned_cols=84  Identities=15%  Similarity=0.050  Sum_probs=70.8

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHhHccCcchHHHhH
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKY----------ADAATFLLRWGLAADKCNATNSQCKAY  131 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~a~~~  131 (233)
                      +.+++|++.|++|+++.+..      +.++.++|.++..++++          ++|+..|++++.+      .+....++
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------dP~~~~A~   83 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDEAV   83 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------CcCcHHHH
Confidence            67889999999999888753      36888999999988875          5999999999987      34456789


Q ss_pred             HHHHHHHHhhC-----------CHHHHHHHHHHhhcC
Q 026767          132 LSAIIVYLYAN-----------DFKQAEKCYNDCSQV  157 (233)
Q Consensus       132 ~~lg~~~~~~g-----------d~~~A~~~~~~al~~  157 (233)
                      +++|.+|..+|           ++++|+++|++|+.+
T Consensus        84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            99999999875           899999999999955

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.67  E-value=1.8e-07  Score=65.79  Aligned_cols=83  Identities=7%  Similarity=-0.163  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHH
Q 026767           27 EVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYA  105 (233)
Q Consensus        27 eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~  105 (233)
                      +|+.+|++++...     + ....++.++|.++. .|++++|+.+|++++.+.+..      ..++.++|.++...|+++
T Consensus         3 ~a~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~   70 (115)
T 2kat_A            3 AITERLEAMLAQG-----T-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRA   70 (115)
T ss_dssp             CHHHHHHHHHTTT-----C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHH
Confidence            4566666665532     1 22456777777777 677888888887777765432      246677777777778888


Q ss_pred             HHHHHHHHHHHHHhHc
Q 026767          106 DAATFLLRWGLAADKC  121 (233)
Q Consensus       106 ~A~~~~~~al~~~~~~  121 (233)
                      +|+.+|++++.+....
T Consensus        71 ~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           71 GARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccc
Confidence            8888777777765443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.66  E-value=3.1e-07  Score=63.33  Aligned_cols=67  Identities=13%  Similarity=0.029  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                      ..++.++|.++. .|++++|+.+|++++++.+...      .++.++|.++..+|++++|+..|++++.+....
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            345566666666 5666666666666666554322      255666666666666666666666666655443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.65  E-value=4.3e-08  Score=73.98  Aligned_cols=85  Identities=12%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC----------HHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV----------PEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~----------~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      +.+.+++|+..|++|+++.      ..-+.+|.++|.++. .++          +++|+..|++|+++-+..      ..
T Consensus        14 r~~~feeA~~~~~~Ai~l~------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~~   81 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------DE   81 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHhHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------HH
Confidence            4567889999999998884      245678999999988 665          469999999999997752      36


Q ss_pred             HHHHHHHHHHHhc-----------cHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLE-----------KYADAATFLLRWGLA  117 (233)
Q Consensus        90 ~l~~lg~~~~~~g-----------~~~~A~~~~~~al~~  117 (233)
                      ++.++|.+|..+|           ++++|+.+|++|+++
T Consensus        82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            8999999999885           899999999999987

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.65  E-value=3.5e-07  Score=63.08  Aligned_cols=73  Identities=12%  Similarity=0.075  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      -+.++.++|.+|...|++++|+.+|++++.+...      -..++.++|.+|. .|++++|+.+|++++++.+..++...
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            3568899999999999999999999999988422      3458999999999 89999999999999999998877643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.60  E-value=9.9e-08  Score=83.37  Aligned_cols=163  Identities=11%  Similarity=0.114  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-------------HHHHcCCchHH--------HHHHHHHHHHhh-hCCHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASE-------------LYNECGRSQPA--------SDALAKAARALE-DAVPEDAI   68 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~-------------l~~~~g~~~~~--------a~~l~~lg~~~~-~g~~~~A~   68 (233)
                      .|..++..+...|++++|+.+++.+.+             .|.+.|+....        ..++.++|..+. .|.+++|+
T Consensus        63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~  142 (449)
T 1b89_A           63 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAK  142 (449)
T ss_dssp             ----------------------------------------------CHHHHTTTTTCC----------------CTTTHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            455566666667777777777777663             23344433221        127788888888 79999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------HhHcc---------Cc-chHHH
Q 026767           69 QLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA---------ADKCN---------AT-NSQCK  129 (233)
Q Consensus        69 ~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~---------~~~~~---------~~-~~~a~  129 (233)
                      .+|.++              ..+.+++.++.++|+|++|++.|+++...         |...+         .. ...+.
T Consensus       143 ~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad  208 (449)
T 1b89_A          143 LLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD  208 (449)
T ss_dssp             HHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH
T ss_pred             HHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh
Confidence            988866              35778999999999999999999987322         11111         00 00111


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      .+..++.+|.+.|.+.+|..+++.++.+.+.    -..+.+.|+-++..=.++...++++.+
T Consensus       209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le~a----h~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          209 ELEELINYYQDRGYFEELITMLEAALGLERA----HMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC----CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH----HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            2334567788888888888888888755432    245667777777777788888888877

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.53  E-value=1.4e-06  Score=61.04  Aligned_cols=71  Identities=13%  Similarity=0.030  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      +.++.++|.+|...|++++|+.+|++++.+..      ....++.++|.++. .|++++|+.+|++++++.+..++..
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   90 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQ   90 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHH
Confidence            56899999999999999999999999998742      23568899999999 8999999999999999999877653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.50  E-value=1.2e-06  Score=76.52  Aligned_cols=128  Identities=11%  Similarity=0.094  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHH---------HHh
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIM---------LEE   80 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~---------~~~   80 (233)
                      ++.++|..|...|++++|..+|.++              ..+.++|.++. .|++++|++.|++|-..         ...
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD  189 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            7888899888899999999988866              36778888888 68889888888888322         011


Q ss_pred             cCChHHHH----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh--hCCHHHHH
Q 026767           81 DDKEQMAF----------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY--ANDFKQAE  148 (233)
Q Consensus        81 ~g~~~~~~----------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~--~gd~~~A~  148 (233)
                      .|+...+-          .-+..+..+|.+.|++++|+.++++++.+      .+.....+..++.+|.+  .|+..+.+
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l------e~ah~~~ftel~il~~ky~p~k~~ehl  263 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL------ERAHMGMFTELAILYSKFKPQKMREHL  263 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------TTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC------cHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            11111110          11224557899999999999999999853      23334456666666654  45555555


Q ss_pred             HHHHHhhcCC
Q 026767          149 KCYNDCSQVD  158 (233)
Q Consensus       149 ~~~~~al~~~  158 (233)
                      +.|...+.++
T Consensus       264 ~~~~~~ini~  273 (449)
T 1b89_A          264 ELFWSRVNIP  273 (449)
T ss_dssp             HHHSTTSCHH
T ss_pred             HHHHHHhcCc
Confidence            5555544444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.50  E-value=1.1e-06  Score=64.39  Aligned_cols=87  Identities=15%  Similarity=0.107  Sum_probs=75.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-----CCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-----AVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-----g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      +|.+|...+..++|+.+|++|.+.    |    -+.++.++|.+|..     +++++|+++|++|++.    |+    ..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~----g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~----~~   94 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL----N----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND----QD   94 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC----HH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC----HH
Confidence            889998888899999999999875    4    35778999999984     6899999999999864    43    35


Q ss_pred             HHHHHHHHHHH----hccHHHHHHHHHHHHHH
Q 026767           90 LYRAATNVYIK----LEKYADAATFLLRWGLA  117 (233)
Q Consensus        90 ~l~~lg~~~~~----~g~~~~A~~~~~~al~~  117 (233)
                      ++.++|.+|..    .+++++|+.+|+++.+.
T Consensus        95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            78999999999    89999999999999863

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.45  E-value=5.2e-05  Score=65.36  Aligned_cols=176  Identities=6%  Similarity=-0.027  Sum_probs=138.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-CChHHHHHH
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-DKEQMAFDL   90 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-g~~~~~~~~   90 (233)
                      ..+|..|...|+|.+|+..+.+...-.....|......++..-..+|. .+++.++...|.+|..+.... .++...+..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            378999999999999999999999999888888788888888888888 799999999999999998876 677777878


Q ss_pred             HHHHHHHHH-HhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767           91 YRAATNVYI-KLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA  169 (233)
Q Consensus        91 l~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l  169 (233)
                      ...-|.++. ..++|.+|..+|-++.+-+...+.+.. ..++.-+++|.+..++..+-......= ....+ ...+-..+
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~-~~~lkYlvL~aLl~~~r~el~~~l~~~-~~~~~-~~pei~~l  259 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKA-LTSLKYMLLCKIMLGQSDDVNQLVSGK-LAITY-SGRDIDAM  259 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHH-HHHHHHHHHHHHHTTCGGGHHHHHHSH-HHHTT-CSHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHH-HHHHHHHHHHHHHcCCHHHHHHHhccc-ccccc-CCccHHHH
Confidence            888899999 899999999999999988876665432 234455677777777632222222110 01112 34567789


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhc
Q 026767          170 TKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       170 ~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      ..|..++..+|...+...++.+
T Consensus       260 ~~L~~a~~~~dl~~f~~iL~~~  281 (394)
T 3txn_A          260 KSVAEASHKRSLADFQAALKEY  281 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999999988876

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.42  E-value=1.9e-05  Score=65.89  Aligned_cols=177  Identities=7%  Similarity=-0.006  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      ++.-+|.++...|++++|+.++.+.+.    .|.......++..++.++. .|+++.|.+.+++..+..+..-  +..-.
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~d~  175 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGID----NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGDNE  175 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccchH
Confidence            346888999999999999999998733    2322356677778888888 7999999999998766544100  00012


Q ss_pred             HHHHHHHH--HHHhc--cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCC----
Q 026767           90 LYRAATNV--YIKLE--KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAF----  160 (233)
Q Consensus        90 ~l~~lg~~--~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~----  160 (233)
                      ++..++..  .+..|  ++.+|+.+|++....   .++ +.....+++   ++..+|++++|.+.++..+.. +.+    
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~  248 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQT---FPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE  248 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence            44555444  55556  999999999986532   111 122333444   899999999999999976543 222    


Q ss_pred             -CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHH
Q 026767          161 -LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIK  202 (233)
Q Consensus       161 -~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~  202 (233)
                       ..+....++.+++... ..|+  .+.+.+++. ...+=.+++..
T Consensus       249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence             1345677886776544 5676  666777666 34433334333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.37  E-value=5.8e-06  Score=57.54  Aligned_cols=68  Identities=7%  Similarity=-0.080  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK-EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~-~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      .-...+|..+. .++|..|+.||++|+........ ......++..+|.++.++|++++|+.++++++.+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34557788887 78888888888888888765431 1223467888888888888888888888888865

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.28  E-value=3.7e-06  Score=57.06  Aligned_cols=86  Identities=10%  Similarity=-0.044  Sum_probs=63.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHH-HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASD-ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL   90 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~-~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~   90 (233)
                      .+.|.++...|++++|+.+|++++...     +. ... ++.++|.++. .|++++|+.+|++++++.+....      +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~   71 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE-----PV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA------L   71 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-----SS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH------H
Confidence            356778888899999999999998863     22 234 7888999988 79999999999999988665432      1


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           91 YRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        91 l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      +.        .+.+.+++.+|++++...
T Consensus        72 ~~--------~~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           72 QA--------RKMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             HH--------HHHHHHHHHHHCCTTHHH
T ss_pred             HH--------HHHHHHHHHHHHHHhccC
Confidence            11        156777777777776553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.28  E-value=0.00013  Score=62.80  Aligned_cols=188  Identities=13%  Similarity=0.107  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      .+...+|.+|...|++++-.+++......+...... ..+....++=..+.  .+..+.-++....++++.+........
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka-k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA-KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999998887777665544 46676777776666  377788889999999999887766555


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC--CCCc-h
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA--FLRS-D  164 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~--~~~~-~  164 (233)
                      ..+-.++|.+|...|+|.+|...+.+...-+....+......++.....+|..++++.++...+..+..+..  ..++ -
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence            445568999999999999999999998888877766666777788888889999999999999988874332  1322 2


Q ss_pred             HHHHHHHHHHHH--hcCCHHHHHHHHhhc--ccccchH
Q 026767          165 QNRCATKLISAY--TEGDVEEIKRVAQSS--AISNLDH  198 (233)
Q Consensus       165 e~~~l~~L~~a~--~~gd~~~a~~~~~~~--~~~~ld~  198 (233)
                      .+.+-..-|-.+  ..+|+..|...+-++  .+...+.
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~  216 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDS  216 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccccc
Confidence            333333333333  478888887776666  4555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.19  E-value=1.7e-05  Score=55.09  Aligned_cols=73  Identities=12%  Similarity=0.023  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED   81 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~   81 (233)
                      +.....+|..+.+.++|..|+.+|++|+........ ......++.++|.++. .|+++.|+.++++++.+.+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            355678999999999999999999999999865432 2456789999999999 899999999999999986653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.07  E-value=4.2e-05  Score=51.60  Aligned_cols=60  Identities=15%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH-hHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK-AYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~-~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      .+.|.++...|+|++|+..|++++...      +.... +++.+|.++..+|++++|+.+|++++..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            457888888999999999999988752      22234 7889999999999999999999998844

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.06  E-value=0.00013  Score=54.94  Aligned_cols=107  Identities=7%  Similarity=-0.005  Sum_probs=81.2

Q ss_pred             HHHHHHHH-HHHHhhhCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767           47 PASDALAK-AARALEDAVPEDAIQLYTDACIMLEEDDK---EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN  122 (233)
Q Consensus        47 ~~a~~l~~-lg~~~~~g~~~~A~~~~~~Al~~~~~~g~---~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  122 (233)
                      +.-+++.. +-.++..+.|+.|+-....++.+.....+   +...+.++..+|+++...++|.+|..+|++++...+...
T Consensus        18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~   97 (167)
T 3ffl_A           18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS   97 (167)
T ss_dssp             ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence            33344443 34444479999999999999988876553   677788999999999999999999999999988776432


Q ss_pred             C-------------------cchHHHhHHHHHHHHHhhCCHHHHHHHHHH
Q 026767          123 A-------------------TNSQCKAYLSAIIVYLYANDFKQAEKCYND  153 (233)
Q Consensus       123 ~-------------------~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~  153 (233)
                      .                   ...+..+.+.++.||...+++.+|+..++.
T Consensus        98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            1                   123345678999999999999999998876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.95  E-value=0.0004  Score=52.29  Aligned_cols=100  Identities=18%  Similarity=0.088  Sum_probs=81.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH---
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGR---SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ---   85 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~---~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~---   85 (233)
                      .++-.++ +.+.|+-|+-....++.+.....+   +...+.++..+|..+. +++|..|...|++|+.+.+...+..   
T Consensus        25 dqik~L~-d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~  103 (167)
T 3ffl_A           25 DHVRDMA-AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR  103 (167)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHH-HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            3343344 489999999999999999876555   6788999999999999 8999999999999999988543222   


Q ss_pred             ----------------HHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 026767           86 ----------------MAFDLYRAATNVYIKLEKYADAATFLLR  113 (233)
Q Consensus        86 ----------------~~~~~l~~lg~~~~~~g~~~~A~~~~~~  113 (233)
                                      ...++...++.+|.+++++++|+..++.
T Consensus       104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                            2246889999999999999999998773

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.91  E-value=0.00057  Score=56.92  Aligned_cols=170  Identities=4%  Similarity=-0.079  Sum_probs=124.7

Q ss_pred             HHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHH--HHHHHHHHHHHHHHh
Q 026767           11 HMESAAALA----KEL---HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPE--DAIQLYTDACIMLEE   80 (233)
Q Consensus        11 ~~~~~g~~~----~~~---g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~--~A~~~~~~Al~~~~~   80 (233)
                      +++.-+.++    ...   +++++++.++++++....      .-..++..-+.++. .|.++  ++++++.++++....
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p------kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~  178 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP------KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK  178 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence            455555666    555   789999999999997642      33456777788888 68887  999999999976543


Q ss_pred             cCChHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHH-HHHHHHH
Q 026767           81 DDKEQMAFDLYRAATNVYIKLEK------YADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQ-AEKCYND  153 (233)
Q Consensus        81 ~g~~~~~~~~l~~lg~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~-A~~~~~~  153 (233)
                      .      ..+.+..+.++..+++      ++++++++.+++.+      .+....+++.++.++...|+... ...++++
T Consensus       179 N------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~  246 (306)
T 3dra_A          179 N------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQ  246 (306)
T ss_dssp             C------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred             C------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh------CCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            2      2477888888888887      99999999999975      23344577888888888888555 4445566


Q ss_pred             hhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchHH
Q 026767          154 CSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDHV  199 (233)
Q Consensus       154 al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~  199 (233)
                      ++..... ...-..++..|++++ +.|+.++|.++++..  .++.+...
T Consensus       247 ~~~~~~~-~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~  294 (306)
T 3dra_A          247 FVDLEKD-QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSN  294 (306)
T ss_dssp             TEEGGGT-EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHhccCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence            6543211 223356788999998 789999999999998  36777654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.79  E-value=0.00035  Score=47.51  Aligned_cols=65  Identities=12%  Similarity=-0.049  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-CCC
Q 026767           89 DLYRAATNVYIKLEK---YADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-VDA  159 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~~~  159 (233)
                      ..+..+|.+++..++   .++|..++++++.+      .+...++++.+|.+++..|+|.+|+.+|++.+. .+.
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            577888888876665   79999999999976      455567889999999999999999999999984 444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=97.79  E-value=0.011  Score=49.08  Aligned_cols=204  Identities=7%  Similarity=0.014  Sum_probs=141.9

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-C-------------------
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-A-------------------   62 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-g-------------------   62 (233)
                      |+++++=+.|..+.+=|..++++++|++.....+..+.+.|....++..-.-+-.+|.. +                   
T Consensus        27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p  106 (312)
T 2wpv_A           27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD  106 (312)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred             cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence            57788888888888888889999999999888888888888877666654444444441 1                   


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHH----HH--------HHHhHc-cCcchH
Q 026767           63 -VPEDAIQLYTDACIMLEEDDK-EQMAFDLYRAATNVYIKLEKYADAATFLLR----WG--------LAADKC-NATNSQ  127 (233)
Q Consensus        63 -~~~~A~~~~~~Al~~~~~~g~-~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~----al--------~~~~~~-~~~~~~  127 (233)
                       .-..=..+..+|+.+....|. +.+-...+.-+|..+.+-|++.+|..+|-.    ..        +.+... +..+.+
T Consensus       107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e  186 (312)
T 2wpv_A          107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST  186 (312)
T ss_dssp             TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence             111224667778888776653 444456788999999999999999998842    11        122221 023344


Q ss_pred             HHhH-HHHHHHHHhhCCHHHHHHHHHHhh-cC---------------CC---CCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 026767          128 CKAY-LSAIIVYLYANDFKQAEKCYNDCS-QV---------------DA---FLRSDQNRCATKLISAYTEGDVEEIKRV  187 (233)
Q Consensus       128 a~~~-~~lg~~~~~~gd~~~A~~~~~~al-~~---------------~~---~~~~~e~~~l~~L~~a~~~gd~~~a~~~  187 (233)
                      ...+ ....+.|+..|+...|...|.... ..               ..   |....--.++.-|..+++.++.+.++..
T Consensus       187 ~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~~~lF~~L  266 (312)
T 2wpv_A          187 VAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQLLLITCQTKDKSYFLNL  266 (312)
T ss_dssp             HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccHHHHHHHHHHHhcCCHHHHHHH
Confidence            4444 566677899999999999988765 11               11   1224557788888889988999999999


Q ss_pred             Hhhc--ccccchHHHHHHhcc
Q 026767          188 AQSS--AISNLDHVIIKLARK  206 (233)
Q Consensus       188 ~~~~--~~~~ld~~~~~l~~~  206 (233)
                      +++|  .++.......+|+..
T Consensus       267 ~~~Y~~~L~~~~~~L~~Ig~~  287 (312)
T 2wpv_A          267 KNHYLDFSQAYKSELEFLGQE  287 (312)
T ss_dssp             HHHCHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            9999  665555556666553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.76  E-value=0.003  Score=56.12  Aligned_cols=162  Identities=7%  Similarity=0.060  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC---------CHHHHHHHHHHHHHHHHhc
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DA---------VPEDAIQLYTDACIMLEED   81 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g---------~~~~A~~~~~~Al~~~~~~   81 (233)
                      +...-..|.+.|+.++|+..|++....    |-.. -..+|+.+-.++. .+         ..++|.+.|.+-.    ..
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~----Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~----~~   99 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRN----GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI----VD   99 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHH----TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH----HT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH----Hh
Confidence            455556777899999999999987642    3222 2234444444443 22         3556666655432    23


Q ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC
Q 026767           82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL  161 (233)
Q Consensus        82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~  161 (233)
                      |-.... .+++.+-..|.+.|++++|..+|++...    .|..+. ..+|..+...|...|+.++|.+.|++.... +. 
T Consensus       100 G~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~-  171 (501)
T 4g26_A          100 KVVPNE-ATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES-EV-  171 (501)
T ss_dssp             TCCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC-
T ss_pred             CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc-CC-
Confidence            422232 4889999999999999999999998753    343333 457899999999999999999999987532 11 


Q ss_pred             CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          162 RSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       162 ~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                       .........|+.++ ..|+.++|.+.+++-
T Consensus       172 -~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          172 -VPEEPELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence             12345677888888 899999999988875

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.75  E-value=0.00074  Score=56.27  Aligned_cols=133  Identities=12%  Similarity=0.022  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767           50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC  128 (233)
Q Consensus        50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a  128 (233)
                      .++.-+|.++. .|++++|++++.+.+..-+.    .....++..++.++.++|+.+.|.+.+++........-......
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~----~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~  176 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDNDEA----EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM  176 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence            33468899999 89999999999998543321    12336788899999999999999999998765421000001222


Q ss_pred             HhHHHHHHHHHhhC--CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          129 KAYLSAIIVYLYAN--DFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       129 ~~~~~lg~~~~~~g--d~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ...+.-+.+.+..|  ++.+|...|++....+  ..+.....+..   ++ ..|++++|++.++..
T Consensus       177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln---~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLN---LHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHH---HHHHcCCHHHHHHHHHHH
Confidence            33344466677777  9999999999976433  11112222222   55 799999999999854

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.68  E-value=0.0024  Score=54.35  Aligned_cols=120  Identities=10%  Similarity=-0.043  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh----hC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767           25 WREVADFYRKASELYNECGRSQPASDALAKAARALE----DA-VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI   99 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~----~g-~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~   99 (233)
                      +.+|+.+|++|+++-     | .-+.++..++.+|.    .+ .....+.-..+++............+.++..++.++.
T Consensus       215 ~~~A~~l~e~Al~lD-----P-~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l  288 (372)
T 3ly7_A          215 LNRASELLGEIVQSS-----P-EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL  288 (372)
T ss_dssp             HHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH
Confidence            467777777777763     2 12222333333332    12 1122233334444432222211223356777777777


Q ss_pred             HhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          100 KLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ..|++++|+..+++|+.+-     + . +.++..+|.++...|++++|.+.|++|+.+
T Consensus       289 ~~gd~d~A~~~l~rAl~Ln-----~-s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          289 VKGKTDESYQAINTGIDLE-----M-S-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-----C-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHhcC-----C-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            7788888888888888761     1 1 345677788888888888888888888744

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.66  E-value=0.00031  Score=63.42  Aligned_cols=129  Identities=9%  Similarity=-0.023  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC--CHHHHHHHHHHHHH
Q 026767           10 KHMESAAALAKELHN----------WREVADFYRKASELYNECGRSQPASDALAKAARALE-DA--VPEDAIQLYTDACI   76 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~----------~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g--~~~~A~~~~~~Al~   76 (233)
                      .+|+.-+.++...++          +++++.++++++...      ..-..+|..-+.++. .+  +++++++++.++++
T Consensus        64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~  137 (567)
T 1dce_A           64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (567)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh
Confidence            567777777877777          899999999998753      234556777788888 68  67999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh--------------
Q 026767           77 MLEEDDKEQMAFDLYRAATNVYIKLE-KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA--------------  141 (233)
Q Consensus        77 ~~~~~g~~~~~~~~l~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~--------------  141 (233)
                      +....      ..+++.-+.++..+| .++++++++.++++.      .+....++...+.++...              
T Consensus       138 ~d~~N------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~  205 (567)
T 1dce_A          138 ADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (567)
T ss_dssp             HCTTC------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             hcccc------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH------CCCCccHHHHHHHHHHhhcccccccccccccH
Confidence            86542      357888899999999 999999999998853      333445677777777664              


Q ss_pred             CCHHHHHHHHHHhhc
Q 026767          142 NDFKQAEKCYNDCSQ  156 (233)
Q Consensus       142 gd~~~A~~~~~~al~  156 (233)
                      +.++++++++.+++.
T Consensus       206 ~~~~eel~~~~~ai~  220 (567)
T 1dce_A          206 NVLLKELELVQNAFF  220 (567)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            568999999999984

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.65  E-value=0.0012  Score=49.06  Aligned_cols=99  Identities=8%  Similarity=0.011  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767           64 PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE---KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY  140 (233)
Q Consensus        64 ~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~  140 (233)
                      ...+.+.|.+.+.    .+..  ...+.+++|+++++.+   +..+++.+++..+..-    .+.....+++++|..|.+
T Consensus        14 l~~~~~~y~~e~~----~~~~--~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~k   83 (152)
T 1pc2_A           14 LLKFEKKFQSEKA----AGSV--SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYR   83 (152)
T ss_dssp             HHHHHHHHHHHHH----TTCC--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----cCCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHH
Confidence            3445555555543    2322  2368999999999988   7789999999888631    122445688999999999


Q ss_pred             hCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 026767          141 ANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLIS  174 (233)
Q Consensus       141 ~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~  174 (233)
                      +|+|.+|++++++++.+..  ...++..|..+.+
T Consensus        84 l~~Y~~A~~y~~~lL~ieP--~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           84 LKEYEKALKYVRGLLQTEP--QNNQAKELERLID  115 (152)
T ss_dssp             TSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHH
Confidence            9999999999999995431  3456666666664

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.60  E-value=0.0016  Score=53.70  Aligned_cols=88  Identities=10%  Similarity=0.071  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767           63 VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL-----EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV  137 (233)
Q Consensus        63 ~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~  137 (233)
                      ....|...+++|+++-+..    .-+.++..+|.+|...     |+.++|..+|++|+.+.     +.+...++...|..
T Consensus       178 ~l~~A~a~lerAleLDP~~----~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~~id~~v~YA~~  248 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSY----QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAHDPDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTH----HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTTCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCCCchHHHHHHHH
Confidence            3578888899999887752    2345889999999984     99999999999999873     22224566777888


Q ss_pred             HHh-hCCHHHHHHHHHHhhcCCC
Q 026767          138 YLY-ANDFKQAEKCYNDCSQVDA  159 (233)
Q Consensus       138 ~~~-~gd~~~A~~~~~~al~~~~  159 (233)
                      +.. .||+..|.+++++++..+-
T Consensus       249 l~~~~gd~~~a~~~L~kAL~a~p  271 (301)
T 3u64_A          249 LCIPLNNRAGFDEALDRALAIDP  271 (301)
T ss_dssp             TTTTTTCHHHHHHHHHHHHHCCG
T ss_pred             HHHhcCCHHHHHHHHHHHHcCCC
Confidence            877 5999999999999996543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.55  E-value=0.0033  Score=56.74  Aligned_cols=120  Identities=7%  Similarity=-0.005  Sum_probs=94.4

Q ss_pred             HHcCC-HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC----------HHHHHHHHHHHHHHHHhcCChHHH
Q 026767           20 KELHN-WREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV----------PEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus        20 ~~~g~-~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~----------~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..|. .++|+.++++++.+-     + .-..+|+.-+.++. .|+          ++++++++.++++..+..      
T Consensus        39 ~~~~~~~eeal~~~~~~l~~n-----P-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------  106 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGAN-----P-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------  106 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-----c-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC------
Confidence            34444 468899999998773     2 33556777788877 566          999999999999876642      


Q ss_pred             HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC-CHHHHHHHHHHhhcC
Q 026767           88 FDLYRAATNVYIKLE--KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN-DFKQAEKCYNDCSQV  157 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-d~~~A~~~~~~al~~  157 (233)
                      ..+++.-+.++.+++  +++++++++.+++++      ......++...+.+....| .++++++++.+++..
T Consensus       107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~  173 (567)
T 1dce_A          107 YGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  173 (567)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            357888999999999  779999999999986      2334567888889999999 899999999999843

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.51  E-value=0.0048  Score=56.88  Aligned_cols=167  Identities=11%  Similarity=0.028  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc------
Q 026767           10 KHMESAAALAKELHNWREVA-DFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED------   81 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~-~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~------   81 (233)
                      ..+...+..+...|+.++|. ..|++|+...     | .....+...+.+.+ .|++++|...|++++......      
T Consensus       344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-----P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~  417 (679)
T 4e6h_A          344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCI-----P-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME  417 (679)
T ss_dssp             HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            45666677777788888897 9999997643     2 12345667788888 799999999999999875311      


Q ss_pred             --CC--------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh-CCHHHHHHH
Q 026767           82 --DK--------EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA-NDFKQAEKC  150 (233)
Q Consensus        82 --g~--------~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-gd~~~A~~~  150 (233)
                        ..        ......++..++.+..+.|..+.|...|.+|+...     +......|...+.+.... ++++.|++.
T Consensus       418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-----~~~~~~lyi~~A~lE~~~~~d~e~Ar~i  492 (679)
T 4e6h_A          418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-----KLVTPDIYLENAYIEYHISKDTKTACKV  492 (679)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-----GGSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred             ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence              10        11223467777888888999999999999998641     111123444555555554 457888888


Q ss_pred             HHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          151 YNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       151 ~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      |++++....  ..  ..+....++.. ..|+.+.|+..++++
T Consensus       493 fe~~Lk~~p--~~--~~~w~~y~~fe~~~~~~~~AR~lfera  530 (679)
T 4e6h_A          493 LELGLKYFA--TD--GEYINKYLDFLIYVNEESQVKSLFESS  530 (679)
T ss_dssp             HHHHHHHHT--TC--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHCC--Cc--hHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            888874321  11  22334444433 467888888888877

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.49  E-value=0.0023  Score=54.53  Aligned_cols=132  Identities=11%  Similarity=-0.069  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---hc-cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK---LE-KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV  137 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~---~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~  137 (233)
                      .++.+|+.+|++|+++-+....      ++-.++.+|.-   .+ .......-+.+++............+.++..++.+
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~------A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~  286 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTY------ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVS  286 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHH
Confidence            4568999999999999886532      23333333321   11 11123333344444333444556677889999999


Q ss_pred             HHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHhc
Q 026767          138 YLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLAR  205 (233)
Q Consensus       138 ~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~  205 (233)
                      ++..|++++|...+++++.+.   .+  ......+|.++ -.|++++|.+.+.++ -++..++ ...+..
T Consensus       287 ~l~~gd~d~A~~~l~rAl~Ln---~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~~  350 (372)
T 3ly7_A          287 ALVKGKTDESYQAINTGIDLE---MS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWIE  350 (372)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC---CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHhcC---CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHHh
Confidence            999999999999999999664   22  34456777777 689999999999999 5665554 334433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.47  E-value=0.0023  Score=53.17  Aligned_cols=82  Identities=5%  Similarity=-0.011  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYA--DAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                      +++++++.++.++++..+..      ..+.+.-+.++..+|+++  ++++++.++++.      ......++...+.+..
T Consensus       124 ~~~~~EL~~~~~~l~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~------d~~N~sAW~~R~~ll~  191 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKN------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT------DLKNNSAWSHRFFLLF  191 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Confidence            34455555555554433321      124444444555555554  555555555532      1122233444444444


Q ss_pred             hhCC------HHHHHHHHHHhh
Q 026767          140 YAND------FKQAEKCYNDCS  155 (233)
Q Consensus       140 ~~gd------~~~A~~~~~~al  155 (233)
                      ..|+      +.++++++.+++
T Consensus       192 ~l~~~~~~~~~~eEl~~~~~aI  213 (306)
T 3dra_A          192 SKKHLATDNTIDEELNYVKDKI  213 (306)
T ss_dssp             SSGGGCCHHHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHHHH
Confidence            4444      555555555554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.018  Score=50.37  Aligned_cols=182  Identities=9%  Similarity=0.035  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH-HHHhcCCh
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACI-MLEEDDKE   84 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~-~~~~~g~~   84 (233)
                      ..++....++.+|...|++.+|......-..=....-+...-...+.....++. .+++.+|...+.++.. .+.....+
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            356777889999999999999999888765433334444555666666677777 8999999999999875 45555566


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD  164 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~  164 (233)
                      ...+..+.-.|.++...++|.+|..+|.++...+...++......++..+..+.+-.+....-.....+....   ....
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~---~~~~  291 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND---NNLK  291 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH---SSCH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc---cccc
Confidence            6667788889999999999999999999999877665554333223322222222111111000111111111   1224


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          165 QNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       165 e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      +-..+..|..+|..++...+...++.+
T Consensus       292 ~l~~~~~L~k~f~~~~L~~~~~~~~~~  318 (445)
T 4b4t_P          292 KLESQESLVKLFTTNELMRWPIVQKTY  318 (445)
T ss_dssp             HHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred             ccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence            455667777777666555554444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.27  E-value=0.022  Score=52.54  Aligned_cols=168  Identities=7%  Similarity=-0.054  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCch----------HHHHHHHHHHHHhh-hCCHHHHHHHHHHH
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNEC------GRSQ----------PASDALAKAARALE-DAVPEDAIQLYTDA   74 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~------g~~~----------~~a~~l~~lg~~~~-~g~~~~A~~~~~~A   74 (233)
                      +...+.+....|++++|...|++++......      +.+.          ....++...+.... .|..+.|...|.+|
T Consensus       381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A  460 (679)
T 4e6h_A          381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC  460 (679)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566677778999999999999999875211      1111          23456666676666 68999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHH
Q 026767           75 CIMLEEDDKEQMAFDLYRAATNVYIKLE-KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYND  153 (233)
Q Consensus        75 l~~~~~~g~~~~~~~~l~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~  153 (233)
                      +.......     ..++...+.+-.+.+ +++.|..+|++++..+...      ...+...+......|+...|+..|++
T Consensus       461 ~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~------~~~w~~y~~fe~~~~~~~~AR~lfer  529 (679)
T 4e6h_A          461 RRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKYFATD------GEYINKYLDFLIYVNEESQVKSLFES  529 (679)
T ss_dssp             HHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            87622221     134445566655554 5999999999999875432      12334556666778999999999999


Q ss_pred             hhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          154 CSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       154 al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++....- ...-..+.....+-- ..|+.+.+....++.
T Consensus       530 al~~~~~-~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~  567 (679)
T 4e6h_A          530 SIDKISD-SHLLKMIFQKVIFFESKVGSLNSVRTLEKRF  567 (679)
T ss_dssp             HTTTSSS-TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             HHHhcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9843210 111223344444333 468877777776666

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.051  Score=47.42  Aligned_cols=111  Identities=8%  Similarity=0.046  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc-Ccc
Q 026767           48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN-ATN  125 (233)
Q Consensus        48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~  125 (233)
                      .+++...++.+|+ .|++.+|...+..-..-.....+.......+.....++...++|.+|..++.++........ .+.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            5666778899999 79999999888876533333445666677888899999999999999999999875444443 344


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      ..+..+...|.++...++|.+|-++|.++...+
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            556677889999999999999999999886443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.0022  Score=55.91  Aligned_cols=123  Identities=11%  Similarity=-0.038  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHc-CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHH
Q 026767           30 DFYRKASELYNEC-GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADA  107 (233)
Q Consensus        30 ~~~~~A~~l~~~~-g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A  107 (233)
                      +-+++.+.-+.+. ..-.....++..+|..|. .|++++|++.|.+..+.....+..   ..++..+..+++..+++..+
T Consensus       111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k---id~~l~~irl~l~~~d~~~~  187 (429)
T 4b4t_R          111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK---IDVMLTIARLGFFYNDQLYV  187 (429)
T ss_dssp             HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH---HHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH---HHHHHHHHHHHHHhccHHHH
Confidence            4444555544442 222234566777888888 688888888888877766555443   24666677777888888888


Q ss_pred             HHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          108 ATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       108 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ..++.++..+....++.....+....-|.+++..++|..|-.+|-++.
T Consensus       188 ~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~  235 (429)
T 4b4t_R          188 KEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSL  235 (429)
T ss_dssp             HHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence            888888887777766666666666777888888888888888887765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.15  E-value=0.055  Score=45.37  Aligned_cols=167  Identities=10%  Similarity=0.071  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC-HHHHHHHHHHHHHHHHhcCChH
Q 026767           10 KHMESAAALAKELH--NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV-PEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus        10 ~~~~~~g~~~~~~g--~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~-~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      .++..-+.++...+  ++++++.++.++++...      .--.++..-+.++. .|. ++++++++.++++.....    
T Consensus       109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp------rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N----  178 (331)
T 3dss_A          109 GTWHHRCWLLSRLPEPNWARELELCARFLEADE------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN----  178 (331)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC----
T ss_pred             HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC----
Confidence            45666677777777  48999999999988642      23456777777777 577 699999999999865532    


Q ss_pred             HHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhC--------
Q 026767           86 MAFDLYRAATNVYIKL--------------EKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYAN--------  142 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~g--------  142 (233)
                        ..+++..+.++..+              +.++++++++.+++.+.     +.. ..++ +.-|++....|        
T Consensus       179 --~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-----P~d-~SaW~Y~r~ll~~~~~~~~~~~~~  250 (331)
T 3dss_A          179 --YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-----PND-QSAWFYHRWLLGAGSGRCELSVEK  250 (331)
T ss_dssp             --HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-----TTC-HHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred             --HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHhccCccccchHH
Confidence              24677777777776              67999999999999762     222 2344 34444444433        


Q ss_pred             --CHHHHHHHHHHhhcCCCCCCchHHHHHHHHH---HHH-hcCCHHHHHHHHhhc-ccccchH
Q 026767          143 --DFKQAEKCYNDCSQVDAFLRSDQNRCATKLI---SAY-TEGDVEEIKRVAQSS-AISNLDH  198 (233)
Q Consensus       143 --d~~~A~~~~~~al~~~~~~~~~e~~~l~~L~---~a~-~~gd~~~a~~~~~~~-~~~~ld~  198 (233)
                        -+.++++++.+.+.+..-+    ...+..++   ... ..+..+.....+.+- -++++..
T Consensus       251 ~~~l~~el~~~~elle~~pd~----~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~  309 (331)
T 3dss_A          251 STVLQSELESCKELQELEPEN----KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  309 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHhhCccc----chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence              4789999999988443211    22233332   233 356666766666666 4555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.13  E-value=0.0013  Score=44.71  Aligned_cols=63  Identities=13%  Similarity=-0.028  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhh-hCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           49 SDALAKAARALE-DAV---PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~---~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      +..+...|.++. .++   .++|..++++|+.+-+..      ..++..+|.++.+.|+|.+|+.+++++++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            456677777775 433   799999999999987754      257788999999999999999999998864

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.0054  Score=53.38  Aligned_cols=132  Identities=11%  Similarity=-0.048  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      .+++..+|..|.+.|++++|+.+|.+........  . .....+..+-.++. .+++..+..++.++-.+....+++...
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~--~-~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~  207 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST--G-AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR  207 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC--C-SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--H-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence            3456789999999999999999999987654332  2 33445555555555 899999999999999999999887777


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF  144 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~  144 (233)
                      .......|.++...++|.+|..+|-.+...+...+.. .........++|.+...+.
T Consensus       208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~-~~~~~~~y~~l~al~~~~r  263 (429)
T 4b4t_R          208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELT-SYESIATYASVTGLFTLER  263 (429)
T ss_dssp             HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHH-HHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchh-hHHHHHHHHHHHHHhcCCH
Confidence            6677777888899999999999999887665433221 1222234444555544443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=97.06  E-value=0.11  Score=43.60  Aligned_cols=191  Identities=14%  Similarity=0.191  Sum_probs=132.0

Q ss_pred             CCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC----------------
Q 026767            3 SSP---WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DA----------------   62 (233)
Q Consensus         3 ~~~---~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g----------------   62 (233)
                      |++   +++=+.|..+.+=|..+++|++|++.....+..+.+.|....++..-.-+-.+|. .+                
T Consensus        26 G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           26 GQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             CCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            566   8888889999988888999999999988888888888887776665544444444 21                


Q ss_pred             -----CHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHH----H--------HHHHhHccCc
Q 026767           63 -----VPEDAIQLYTDACIMLEEDD-KEQMAFDLYRAATNVYIKLEKYADAATFLLR----W--------GLAADKCNAT  124 (233)
Q Consensus        63 -----~~~~A~~~~~~Al~~~~~~g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~----a--------l~~~~~~~~~  124 (233)
                           ++ .=..+..+|+.+....| .+.+--..+..+|.+|.+.++|.+|..+|--    +        .+.+.. .. 
T Consensus       106 ~~~~~~p-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~-~~-  182 (336)
T 3lpz_A          106 LFQPGEP-VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ-DE-  182 (336)
T ss_dssp             TSCTTCH-HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT-SC-
T ss_pred             hCCCCCc-HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh-cC-
Confidence                 22 22456677777777654 2344446778899999999999999888731    1        111122 22 


Q ss_pred             chHHHhH-HHHHHHHHhhCCHHHHHHHHHHhhc-----CCC---------------CCCchHHHHHHHHHHHHhcCCHHH
Q 026767          125 NSQCKAY-LSAIIVYLYANDFKQAEKCYNDCSQ-----VDA---------------FLRSDQNRCATKLISAYTEGDVEE  183 (233)
Q Consensus       125 ~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al~-----~~~---------------~~~~~e~~~l~~L~~a~~~gd~~~  183 (233)
                      +.+...+ ....+.|+..++...|...+.....     .+.               |....--.++.-|..+++.+..+.
T Consensus       183 ~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~l  262 (336)
T 3lpz_A          183 SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDL  262 (336)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred             CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHH
Confidence            3444444 6777888999999999997766552     121               111333457777888888899999


Q ss_pred             HHHHHhhc--ccccc
Q 026767          184 IKRVAQSS--AISNL  196 (233)
Q Consensus       184 a~~~~~~~--~~~~l  196 (233)
                      +...++.|  .+++.
T Consensus       263 F~~L~~~Y~~~l~rd  277 (336)
T 3lpz_A          263 FRQLKSKYEANLNEL  277 (336)
T ss_dssp             HHHHHHHTHHHHHTT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            99999988  55543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.05  E-value=0.0036  Score=51.54  Aligned_cols=84  Identities=12%  Similarity=-0.018  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 026767           25 WREVADFYRKASELYNECGRSQPASDALAKAARALED------AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVY   98 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~------g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~   98 (233)
                      ..+|...+++|+++-    .....+.++.-+|.+|..      |+.++|.++|++|+++.+..+     ..+..-+|+.+
T Consensus       179 l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~l  249 (301)
T 3u64_A          179 VHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADAL  249 (301)
T ss_dssp             HHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHHH
Confidence            467888888888773    233467789999999995      899999999999999998532     24677899999


Q ss_pred             HHh-ccHHHHHHHHHHHHHH
Q 026767           99 IKL-EKYADAATFLLRWGLA  117 (233)
Q Consensus        99 ~~~-g~~~~A~~~~~~al~~  117 (233)
                      +.. |++++|..++++++.+
T Consensus       250 ~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          250 CIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             TTTTTCHHHHHHHHHHHHHC
T ss_pred             HHhcCCHHHHHHHHHHHHcC
Confidence            884 9999999999999975

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.95  E-value=0.034  Score=41.18  Aligned_cols=82  Identities=15%  Similarity=0.055  Sum_probs=58.7

Q ss_pred             cCCchHHHHHHHHHHHHhh-hC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           42 CGRSQPASDALAKAARALE-DA---VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        42 ~g~~~~~a~~l~~lg~~~~-~g---~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      .|...  ..+..+.|.++. ..   +.++++..++..++..    .+..-.+|+.++|..+.++|+|++|..++++++++
T Consensus        27 ~~~~~--~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           27 AGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             TTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             cCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45543  455666776666 34   6779999999988753    22233479999999999999999999999999976


Q ss_pred             HhHccCcchHHHhHHH
Q 026767          118 ADKCNATNSQCKAYLS  133 (233)
Q Consensus       118 ~~~~~~~~~~a~~~~~  133 (233)
                          ...+.++..+..
T Consensus       101 ----eP~n~QA~~Lk~  112 (152)
T 1pc2_A          101 ----EPQNNQAKELER  112 (152)
T ss_dssp             ----CTTCHHHHHHHH
T ss_pred             ----CCCCHHHHHHHH
Confidence                333455554433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.89  E-value=0.0087  Score=50.65  Aligned_cols=126  Identities=6%  Similarity=-0.012  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-C-CHHHHHHHHHHHHHHHHhcCChHHH
Q 026767           12 MESAAALAKELH-NWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-A-VPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus        12 ~~~~g~~~~~~g-~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g-~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ++.-+.++...+ ++++++.++++++...     + .-..+++.-+.++. . + +++++++++.++++.....      
T Consensus        91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~n-----P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN------  158 (349)
T 3q7a_A           91 WQYRFSLLTSLNKSLEDELRLMNEFAVQN-----L-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN------  158 (349)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTT-----C-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC------
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC------
Confidence            444444444444 3555555555554321     1 22334444455555 3 4 6666666666666433221      


Q ss_pred             HHHHHHHHHHHHHhccHH--------HHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCC-------HHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYA--------DAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAND-------FKQAEKCYN  152 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd-------~~~A~~~~~  152 (233)
                      ..+.+.-+.++..+|+++        +++++++++++.      ......++...+.+....++       +.++++++.
T Consensus       159 y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~  232 (349)
T 3q7a_A          159 YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYIL  232 (349)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            235666666666666666        777777777754      22334456666677766665       567777776


Q ss_pred             Hhh
Q 026767          153 DCS  155 (233)
Q Consensus       153 ~al  155 (233)
                      +++
T Consensus       233 ~aI  235 (349)
T 3q7a_A          233 KSI  235 (349)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=96.87  E-value=0.037  Score=46.00  Aligned_cols=132  Identities=8%  Similarity=-0.034  Sum_probs=109.0

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI   99 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~   99 (233)
                      ..|+|=||.+.|+--..-|.+.++...+...+..-+..+. .|++.-|.....--++.++..+..... ....++..++.
T Consensus        25 ~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~-~~~~rl~~l~~  103 (312)
T 2wpv_A           25 KAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD-ISVARLVRLIA  103 (312)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH-HHHHHHHHHHT
T ss_pred             hccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Confidence            3699999999999999999999999999999999999888 799999999999999999998866554 36778888876


Q ss_pred             HhccHH-HHHHHHHHHHHHHhHccC-cchHHHhHHHHHHHHHhhCCHHHHHHHHHH
Q 026767          100 KLEKYA-DAATFLLRWGLAADKCNA-TNSQCKAYLSAIIVYLYANDFKQAEKCYND  153 (233)
Q Consensus       100 ~~g~~~-~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~  153 (233)
                      ....-+ .=..+..+++....+.+. ..+....+..+|..+...|++.+|+.+|-.
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~  159 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML  159 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence            643222 235777888888877755 566667789999999999999999999863

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.83  E-value=0.022  Score=48.12  Aligned_cols=160  Identities=8%  Similarity=-0.004  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC-CHHHHHHHHHHHHHHHHhcCChHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DA-VPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g-~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      .++..+..+....+..++|+.++++++.+--      .-..+++.-+.++. .+ .+++++.++.+++...+..      
T Consensus        55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn------  122 (349)
T 3q7a_A           55 DAMDYFRAIAAKEEKSERALELTEIIVRMNP------AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS------  122 (349)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------
Confidence            4455555566667777899999999988742      23456777888888 67 6999999999999766643      


Q ss_pred             HHHHHHHHHHHHHh-c-cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHH--------HHHHHHHHhhc-
Q 026767           88 FDLYRAATNVYIKL-E-KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFK--------QAEKCYNDCSQ-  156 (233)
Q Consensus        88 ~~~l~~lg~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~--------~A~~~~~~al~-  156 (233)
                      ..+.+.-+.++..+ + +++++++++.++++.      .+....++...+.+....|.+.        ++++++++++. 
T Consensus       123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence            25777888888887 7 899999999998853      2233456666777777777766        89999999883 


Q ss_pred             CCCCCCchHHHHHHHHHHHH-hcCC-------HHHHHHHHhhcc
Q 026767          157 VDAFLRSDQNRCATKLISAY-TEGD-------VEEIKRVAQSSA  192 (233)
Q Consensus       157 ~~~~~~~~e~~~l~~L~~a~-~~gd-------~~~a~~~~~~~~  192 (233)
                      .++.     ..+....+.++ ..+.       .+++.+++.+++
T Consensus       197 dp~N-----~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI  235 (349)
T 3q7a_A          197 DGRN-----NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI  235 (349)
T ss_dssp             CTTC-----HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCC-----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence            3322     23333334444 2332       456666666663

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0038  Score=55.33  Aligned_cols=143  Identities=8%  Similarity=0.034  Sum_probs=101.1

Q ss_pred             HHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           40 NECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        40 ~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      .-..|..+++.+++-+=..|. .+.|++|..+..++.  |++. ....+.+.-+.-+|.++.-.++|.+|.+++..|+..
T Consensus       222 ~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          222 SLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             CSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             hcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            335678899999999999998 799999999999985  5544 344455677888999999999999999999999865


Q ss_pred             HhHccCc-chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          118 ADKCNAT-NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       118 ~~~~~~~-~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      +...... ...-.++..+..|.+-+|+.++ +..|.+.    ..  .........|..+++.||...+...++..
T Consensus       300 ap~~~~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q~----~l--~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h  367 (523)
T 4b4t_S          300 APHNSKSLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQS----NM--QKSLLPYYHLTKAVKLGDLKKFTSTITKY  367 (523)
T ss_dssp             CSCSSSCSHHHHHHHHHHHHHHHHHTCCCC-HHHHTTT----SC--HHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             CCcchhhhhHHHHHHHHHHhHHhhcCCCCC-hHHhhch----hH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            4322211 1223445566777777788654 2222221    11  11234456788899999999999988877

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.74  E-value=0.03  Score=47.01  Aligned_cols=117  Identities=9%  Similarity=-0.046  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767           25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-DA--VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL  101 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g--~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~  101 (233)
                      +++++.++++++...      ..-..+++.-+.++. .+  .+++++.++.+++++.+..      ..+.+.-+.++...
T Consensus        90 l~~EL~~~~~~L~~~------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN------y~AW~~R~~vl~~l  157 (331)
T 3dss_A           90 VKAELGFLESCLRVN------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQA  157 (331)
T ss_dssp             HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh
Confidence            466777777776542      234556777777777 56  5899999999999876542      25788888898999


Q ss_pred             cc-HHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh--------------CCHHHHHHHHHHhh-cCCC
Q 026767          102 EK-YADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA--------------NDFKQAEKCYNDCS-QVDA  159 (233)
Q Consensus       102 g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~--------------gd~~~A~~~~~~al-~~~~  159 (233)
                      |+ ++++++++.+++..      .+....++...+.+....              +.+.++++++.+++ ..|.
T Consensus       158 ~~~~~eel~~~~~~I~~------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~  225 (331)
T 3dss_A          158 AVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN  225 (331)
T ss_dssp             TCCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred             CcCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence            98 69999999999965      233344666666666655              55889999999998 4443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.67  E-value=0.039  Score=39.50  Aligned_cols=80  Identities=13%  Similarity=0.084  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhccHHH---HHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchH
Q 026767           89 DLYRAATNVYIKLEKYAD---AATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQ  165 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e  165 (233)
                      .+.+++|+.+++......   ++.+++..+.   . +.+...-.+++.++..+.+.|+|.+|+++++..+.+..  ...+
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP--~n~Q  109 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLP---K-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP--QNNQ  109 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---T-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC--CCHH
Confidence            688999999998876666   8888886553   2 22224446789999999999999999999999985431  3467


Q ss_pred             HHHHHHHHH
Q 026767          166 NRCATKLIS  174 (233)
Q Consensus       166 ~~~l~~L~~  174 (233)
                      +..|..+++
T Consensus       110 A~~Lk~~i~  118 (126)
T 1nzn_A          110 AKELERLID  118 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.50  E-value=0.11  Score=46.02  Aligned_cols=97  Identities=10%  Similarity=0.013  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      ..+++.+-..|. .|++++|.+.+++..    ..|-.... .+++.+-..|.+.|+.++|.++|++...    .|..+..
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~g~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~G~~Pd~  175 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMK----AFGIQPRL-RSYGPALFGFCRKGDADKAYEVDAHMVE----SEVVPEE  175 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCCCCH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCcc-ceehHHHHHHHHCCCHHHHHHHHHHHHh----cCCCCCH
Confidence            346777777777 799999999988754    33422222 4789999999999999999999998763    3444443


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                       .+|..+..++...|+.++|.+.|++..
T Consensus       176 -~ty~~Li~~~~~~g~~d~A~~ll~~Mr  202 (501)
T 4g26_A          176 -PELAALLKVSMDTKNADKVYKTLQRLR  202 (501)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence             479999999999999999999999865

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.35  E-value=0.041  Score=40.72  Aligned_cols=97  Identities=15%  Similarity=0.131  Sum_probs=70.6

Q ss_pred             HHHHHhh-hCCH------HHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767           54 KAARALE-DAVP------EDAIQLYTDACIMLEEDDK--EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT  124 (233)
Q Consensus        54 ~lg~~~~-~g~~------~~A~~~~~~Al~~~~~~g~--~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  124 (233)
                      ......+ .|++      ++-++.|++|+.-.+....  .+.=+..+.+.+.. ...++.++|.+.|+.++.++.+    
T Consensus        18 ~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk----   92 (161)
T 4h7y_A           18 SLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK----   92 (161)
T ss_dssp             HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH----
Confidence            3344444 4666      6777888888887765432  22223466667755 5679999999999999986322    


Q ss_pred             chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      .  ++++...+.-..++|+..+|++.+.+++..
T Consensus        93 F--AKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           93 F--AFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             B--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             H--HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence            2  888888888899999999999999999853

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=96.23  E-value=0.22  Score=41.75  Aligned_cols=131  Identities=14%  Similarity=0.005  Sum_probs=107.2

Q ss_pred             HcCCH---HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 026767           21 ELHNW---REVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATN   96 (233)
Q Consensus        21 ~~g~~---~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~   96 (233)
                      ..|+|   =||.+.|+.-..-|.+.++...+...+..-+..+. .|++.-|.+...--++.+.+.+.+... ....++..
T Consensus        24 ~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL~~  102 (336)
T 3lpz_A           24 AEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKLLG  102 (336)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHH
T ss_pred             hCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Confidence            47999   89999999999999999999999999999999888 799999999999999999998855443 47778888


Q ss_pred             HHHHhccHH-HHHHHHHHHHHHHhHcc-CcchHHHhHHHHHHHHHhhCCHHHHHHHHH
Q 026767           97 VYIKLEKYA-DAATFLLRWGLAADKCN-ATNSQCKAYLSAIIVYLYANDFKQAEKCYN  152 (233)
Q Consensus        97 ~~~~~g~~~-~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~  152 (233)
                      ++.....-+ .=..+..+++....+.+ .+.+-...+..+|.++...+++.+|+.+|-
T Consensus       103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            877665321 22557777888777654 356666777899999999999999999984

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.05  E-value=0.31  Score=42.90  Aligned_cols=147  Identities=10%  Similarity=-0.008  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-------------------
Q 026767           27 EVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-------------------   86 (233)
Q Consensus        27 eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-------------------   86 (233)
                      .....|++|+....      .....+...+..+. .|++++|...|++|+.. +.......                   
T Consensus       197 Rv~~~ye~al~~~p------~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~  269 (493)
T 2uy1_A          197 RMHFIHNYILDSFY------YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKY  269 (493)
T ss_dssp             HHHHHHHHHHHHTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHH
Confidence            45567777776542      11566777777777 68899999999998877 43321110                   


Q ss_pred             ---------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC-CHHHHHHH
Q 026767           87 ---------------AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN-DFKQAEKC  150 (233)
Q Consensus        87 ---------------~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-d~~~A~~~  150 (233)
                                     ...++...+.+..+.++.+.|...|+++ .   . .  .....++...+.+....+ +++.|+..
T Consensus       270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~---~-~--~~~~~v~i~~A~lE~~~~~d~~~ar~i  342 (493)
T 2uy1_A          270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G---N-E--GVGPHVFIYCAFIEYYATGSRATPYNI  342 (493)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T---T-S--CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h---C-C--CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence                           1123444455555678888899999888 2   1 1  112345555555555445 79999999


Q ss_pred             HHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          151 YNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       151 ~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      |+.++....  ...+  .....++-. ..||.+.++..+++.
T Consensus       343 fe~al~~~~--~~~~--~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          343 FSSGLLKHP--DSTL--LKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHCT--TCHH--HHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHCC--CCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999984321  1111  222234433 567777777666664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.97  E-value=0.95  Score=41.43  Aligned_cols=24  Identities=13%  Similarity=0.101  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLR  113 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~  113 (233)
                      .+.++|..+.+.++++.|..+|.+
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~  706 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTN  706 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455666666666666666666654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.51  E-value=0.44  Score=34.29  Aligned_cols=80  Identities=8%  Similarity=-0.023  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767           88 FDLYRAATNVYIKLE---KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD  164 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~  164 (233)
                      ..+..++++.+++..   +..+++.+++..+.   ..  +...-.+++.+++.+.+.|+|.+|+++.+..+.+.  ....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~---~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e--P~N~  112 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---EA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---HC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--TTCH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--CCCH
Confidence            368899999999876   45578888886654   22  22344578999999999999999999999998553  1346


Q ss_pred             HHHHHHHHHH
Q 026767          165 QNRCATKLIS  174 (233)
Q Consensus       165 e~~~l~~L~~  174 (233)
                      ++..|..+++
T Consensus       113 QA~~Lk~~Ie  122 (134)
T 3o48_A          113 QVGALKSMVE  122 (134)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777775

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.95  Score=38.66  Aligned_cols=170  Identities=12%  Similarity=0.118  Sum_probs=107.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHc-----------CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC-
Q 026767           17 ALAKELHNWREVADFYRKASELYNEC-----------GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK-   83 (233)
Q Consensus        17 ~~~~~~g~~~eA~~~~~~A~~l~~~~-----------g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~-   83 (233)
                      .+.....++++|+++.++......+.           ........+...++..|. .++.++|..+.+++-.+....++ 
T Consensus        84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~  163 (393)
T 4b4t_O           84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI  163 (393)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence            34566788999999887764433221           122344556667788888 79999999999999999888764 


Q ss_pred             -hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc-chHHHh-HHHHHHHHH-hhCCHHHHHHHHHHhhcCCC
Q 026767           84 -EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT-NSQCKA-YLSAIIVYL-YANDFKQAEKCYNDCSQVDA  159 (233)
Q Consensus        84 -~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~-~~~lg~~~~-~~gd~~~A~~~~~~al~~~~  159 (233)
                       +...+..+...+..+...++|..+...+-..+..+...... ...... ...++.+-+ .-+-+     .|.+.+..+.
T Consensus       164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~-----~f~eLL~~p~  238 (393)
T 4b4t_O          164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIY-----NFGELLHHPI  238 (393)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSC-----STHHHHHSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCC-----ChHHHhCChH
Confidence             33445566777888888999999888888887766533221 111111 123333222 22211     1222232332


Q ss_pred             C---CCchHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          160 F---LRSDQNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       160 ~---~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      .   ....+...+..|..++..||...+...++..
T Consensus       239 i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~  273 (393)
T 4b4t_O          239 METIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQ  273 (393)
T ss_dssp             TTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHH
T ss_pred             HHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            2   2344556777899999999999998876544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.01  E-value=0.3  Score=36.06  Aligned_cols=100  Identities=12%  Similarity=0.005  Sum_probs=76.8

Q ss_pred             HHHHHHHHHcCCH------HHHHHHHHHHHHHHH--HcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCCh
Q 026767           13 ESAAALAKELHNW------REVADFYRKASELYN--ECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus        13 ~~~g~~~~~~g~~------~eA~~~~~~A~~l~~--~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      .......-..|++      ++-++.|++|.....  +...-..=+..+.+-+.....+|+++|.+.|+.++.+   ... 
T Consensus        17 ~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~---hKk-   92 (161)
T 4h7y_A           17 LSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN---CKK-   92 (161)
T ss_dssp             HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH---CTT-
T ss_pred             HHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hHH-
Confidence            3333444445888      888899999988642  2445556677777888664479999999999999997   222 


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                       . +.++...+.+-+++|+..+|...+.+|+.++
T Consensus        93 -F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           93 -F-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             -B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence             2 6799999999999999999999999999753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.95  E-value=0.31  Score=41.56  Aligned_cols=89  Identities=12%  Similarity=0.017  Sum_probs=66.3

Q ss_pred             hCCHHHHHHHHHHHHHHHHhc------CChH----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767           61 DAVPEDAIQLYTDACIMLEED------DKEQ----------MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT  124 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~------g~~~----------~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  124 (233)
                      .|+++.|+..+++|+.+++..      +..+          ....++..++..+...|++.+|+..+++.+..     ++
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-----~P  202 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-----HP  202 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----ST
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CC
Confidence            478888888899998887642      1111          11135666778888999999999999988754     23


Q ss_pred             chHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ..+ ..+..+..++...|+..+|++.|+++.
T Consensus       203 ~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          203 YRE-PLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             TCH-HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            222 367888899999999999999999875

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.89  E-value=0.086  Score=46.69  Aligned_cols=62  Identities=10%  Similarity=0.056  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                      -+++..+|.+.. ...+..|..||.+|+.+.+..|      ..++.+|.+....|+.-+|+-+|.+++.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            357888999988 8899999999999999999988      5788999999999999999999999874

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.87  E-value=0.39  Score=40.90  Aligned_cols=99  Identities=11%  Similarity=0.017  Sum_probs=72.2

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCchH--------H----------HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767           20 KELHNWREVADFYRKASELYNECGRSQP--------A----------SDALAKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        20 ~~~g~~~eA~~~~~~A~~l~~~~g~~~~--------~----------a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      ...|++++|.+.+++|+.+|+  |++..        .          ..++..++..+. .|++++++..+.+.+...+-
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~r--G~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~  203 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWR--GPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY  203 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCC--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HhCCCHHHHHHHHHHHHHhcC--CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            346899999999999999984  33211        1          123444455566 69999999999998877653


Q ss_pred             cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh-HccCcch
Q 026767           81 DDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD-KCNATNS  126 (233)
Q Consensus        81 ~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~  126 (233)
                      ..      ..+..+-.++...|+..+|+..|++....+. +.|..++
T Consensus       204 ~E------~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~  244 (388)
T 2ff4_A          204 RE------PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  244 (388)
T ss_dssp             CH------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            22      3677788889999999999999999887553 4555544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.66  E-value=0.79  Score=32.65  Aligned_cols=96  Identities=14%  Similarity=0.089  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767           26 REVADFYRKASELYNECGRSQPASDALAKAARALE-D---AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL  101 (233)
Q Consensus        26 ~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~  101 (233)
                      ..+...|.++..    .|.+..  .+..+.|..+. -   .+..++|..++..+.   . +.+...-.|+..+|..+.++
T Consensus        18 ~~~~~~y~~e~~----~~~~s~--~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~-~~p~~~Rd~lY~LAvg~ykl   87 (126)
T 1nzn_A           18 LKFEKKFQSEKA----AGSVSK--STQFEYAWCLVRTRYNDDIRKGIVLLEELLP---K-GSKEEQRDYVFYLAVGNYRL   87 (126)
T ss_dssp             HHHHHHHHHHHH----HSCCCH--HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---T-SCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc----cCCCcH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c-CCcchHHHHHHHHHHHHHHh
Confidence            344444544432    355544  44555555555 2   344457777766443   2 22334457999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHH
Q 026767          102 EKYADAATFLLRWGLAADKCNATNSQCKAYLSAI  135 (233)
Q Consensus       102 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg  135 (233)
                      |+|++|..+++..+++    ...+.++..+..+.
T Consensus        88 g~Y~~A~~~~~~lL~~----eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           88 KEYEKALKYVRGLLQT----EPQNNQAKELERLI  117 (126)
T ss_dssp             TCHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence            9999999999999865    33445666554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.58  E-value=0.85  Score=41.76  Aligned_cols=15  Identities=20%  Similarity=0.277  Sum_probs=7.5

Q ss_pred             HHHhccHHHHHHHHH
Q 026767           98 YIKLEKYADAATFLL  112 (233)
Q Consensus        98 ~~~~g~~~~A~~~~~  112 (233)
                      +.+.|++++|+++|.
T Consensus       746 ~~~~g~~~~a~~~~~  760 (814)
T 3mkq_A          746 YWIAGDIQGAKDLLI  760 (814)
T ss_dssp             HHHHTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH
Confidence            344555555555553

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.26  E-value=1.1  Score=32.63  Aligned_cols=80  Identities=8%  Similarity=-0.012  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767           88 FDLYRAATNVYIKLE---KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD  164 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~  164 (233)
                      ..+.+++++++++..   +..+++.+++..+.   ....  ..-.+++.++..+.++|+|.+|+++.+..+.+.-  ...
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP--~n~  111 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---EAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER--NNK  111 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---HCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC--CCH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcH
Confidence            468899999999876   44578888886654   3222  3445789999999999999999999999985531  346


Q ss_pred             HHHHHHHHHH
Q 026767          165 QNRCATKLIS  174 (233)
Q Consensus       165 e~~~l~~L~~  174 (233)
                      ++..|..+++
T Consensus       112 QA~~Lk~~Ie  121 (144)
T 1y8m_A          112 QVGALKSMVE  121 (144)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.25  E-value=1.3  Score=33.47  Aligned_cols=123  Identities=12%  Similarity=0.123  Sum_probs=68.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767           22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK  100 (233)
Q Consensus        22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~  100 (233)
                      .|+++.|.+..++.       ++    -..|.++|.... .|+++-|..+|.++-              -+..+..+|.-
T Consensus        18 lg~l~~A~e~a~~l-------~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------------D~~~L~~Ly~~   72 (177)
T 3mkq_B           18 YGNLDAALDEAKKL-------ND----SITWERLIQEALAQGNASLAEMIYQTQH--------------SFDKLSFLYLV   72 (177)
T ss_dssp             TTCHHHHHHHHHHH-------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHTT--------------CHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHh-------CC----HHHHHHHHHHHHHcCChHHHHHHHHHhC--------------CHHHHHHHHHH
Confidence            56666666554322       22    346777777777 677777777776552              12234444555


Q ss_pred             hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHhcCC
Q 026767          101 LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGD  180 (233)
Q Consensus       101 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~~gd  180 (233)
                      .|+-++=.    +..+++...++       ++....+++.+||++++.+.|.+.-..      .++.++     +-..|-
T Consensus        73 tg~~e~L~----kla~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~~~r~------~eA~~~-----A~t~g~  130 (177)
T 3mkq_B           73 TGDVNKLS----KMQNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAEGGSL------PLAYAV-----AKANGD  130 (177)
T ss_dssp             HTCHHHHH----HHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHTTCH------HHHHHH-----HHHTTC
T ss_pred             hCCHHHHH----HHHHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHHCCCh------HHHHHH-----HHHcCc
Confidence            55554333    22223222222       344556778889999999988876322      233222     112566


Q ss_pred             HHHHHHHHhhc
Q 026767          181 VEEIKRVAQSS  191 (233)
Q Consensus       181 ~~~a~~~~~~~  191 (233)
                      .+.|.+..++.
T Consensus       131 ~~~a~~~~~~~  141 (177)
T 3mkq_B          131 EAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            66666666655

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.98  E-value=0.56  Score=43.63  Aligned_cols=87  Identities=13%  Similarity=0.047  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHHHHH----hcC--C------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767           62 AVPEDAIQLYTDACIMLE----EDD--K------EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK  129 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~----~~g--~------~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~  129 (233)
                      .+--+|+....++++-..    ...  +      ....+..+.-.+.++...|+|+-|+.+.++|+.+      .+..-.
T Consensus       299 ~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~------aPseF~  372 (754)
T 4gns_B          299 TKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL------ALDSFE  372 (754)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHH
T ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc------CchhhH
Confidence            344567777777775321    111  1      1112346777899999999999999999999976      456677


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDC  154 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~a  154 (233)
                      ++..|+.||..+|||+.|+-.++-+
T Consensus       373 tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          373 SWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhcC
Confidence            8999999999999999999888765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.98  E-value=0.88  Score=39.97  Aligned_cols=124  Identities=6%  Similarity=0.004  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ...|...+....+.++.+.|...|++| .   ..+ .  ...++...+.+-. . ++++.|...|+++++.+....    
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~---~~~-~--~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~----  354 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-G---NEG-V--GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST----  354 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-T---TSC-C--CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-h---CCC-C--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH----
Confidence            355666666666667788888888877 2   111 1  2345555555444 3 468888888888888764321    


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                        ......+.+....|+.+.|..+|+++..          ....+......-...|+...+...+++++
T Consensus       355 --~~~~~yid~e~~~~~~~~aR~l~er~~k----------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          355 --LLKEEFFLFLLRIGDEENARALFKRLEK----------TSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             --HHHHHHHHHHHHHTCHHHHHHHHHHSCC----------BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              1234466777788888888888887620          12233333344445588888888887776

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.83  E-value=0.29  Score=43.34  Aligned_cols=63  Identities=14%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACI   76 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~   76 (233)
                      +-+.+..+|.+.+-...++.|..||.+|..+.-..|.+      ++.+|.+.. .|+.-+|+-+|.||+.
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~------~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP------YNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH------HHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCch------HHHHHHHHhcccccHHHHHHHHHHHh
Confidence            44678899999999999999999999999998666654      788999999 8999999999999984

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.54  E-value=2.1  Score=41.34  Aligned_cols=100  Identities=13%  Similarity=0.083  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      -..++-+-..|- .|+.++|...+.+-.++....-.+ . ..+++.+-.-|++.|+.++|.++|++..    +.|-.+..
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-d-vvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G~~PDv  200 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-T-LDMYNAVMLGWARQGAFKELVYVLFMVK----DAGLTPDL  200 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-C-HHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCCH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-C-HhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCCcH
Confidence            345666666666 688888888887654443221111 1 2478888888888999999998888775    33544443


Q ss_pred             HHhHHHHHHHHHhhCC-HHHHHHHHHHhh
Q 026767          128 CKAYLSAIIVYLYAND-FKQAEKCYNDCS  155 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd-~~~A~~~~~~al  155 (233)
                       .+|+.+..++.+.|+ .++|.+.|++..
T Consensus       201 -vTYntLI~glcK~G~~~e~A~~Ll~EM~  228 (1134)
T 3spa_A          201 -LSYAAALQCMGRQDQDAGTIERCLEQMS  228 (1134)
T ss_dssp             -HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence             468888888888887 467888887765

>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A

Probab=92.47  E-value=4.9  Score=34.79  Aligned_cols=126  Identities=10%  Similarity=0.053  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC-HHHHHHHHHHHHHHHHhcCChHHH
Q 026767           10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV-PEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus        10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~-~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      -+..++.+.|+..++.+-=+.|+.+-.+++.+.++...+|.++.-.+.++. ... .-.++.   .. .-++..-.....
T Consensus        16 ~~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~---~~-~~~~~qt~~~~k   91 (436)
T 2yin_A           16 SCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVM---QT-GQQHPQTHRQLK   91 (436)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC------------------CHHHHH
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccc---cC-CCCccccHHHHH
Confidence            355688899999999999999999999999999999999999988888777 322 111110   00 001111011111


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc-cCcchHHHhHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKC-NATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~  139 (233)
                      -..+..+...+.+-+.|+.|+.+|+..+..++.. .+....+.++..++.+|.
T Consensus        92 e~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~  144 (436)
T 2yin_A           92 ETLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYE  144 (436)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1357778888888899999999999999988874 555555555555555553

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.41  E-value=0.18  Score=44.66  Aligned_cols=133  Identities=9%  Similarity=0.049  Sum_probs=63.1

Q ss_pred             HcCCHHHHHHHHHHHH--HHHHHc----CCchHHHHHHHHHHHHhh-hCCHHHHH----------HHHHHHHHHHHhcCC
Q 026767           21 ELHNWREVADFYRKAS--ELYNEC----GRSQPASDALAKAARALE-DAVPEDAI----------QLYTDACIMLEEDDK   83 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~--~l~~~~----g~~~~~a~~l~~lg~~~~-~g~~~~A~----------~~~~~Al~~~~~~g~   83 (233)
                      ..+++++|..+-....  ......    =|. -+|++|.=.+.+++ .|.....+          ..+..++....-..+
T Consensus       148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~-l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D  226 (523)
T 4b4t_S          148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNL-INAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD  226 (523)
T ss_dssp             --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhHHhHHH-HHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence            4677888888776555  222222    222 36677777777777 56655432          233344444433445


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc-cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC-NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      ..+.+.+++-+-+.|+..+.|++|..+..++.  +-.. ......++-++.+|.++..+++|.+|.+++..|+.
T Consensus       227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r  298 (523)
T 4b4t_S          227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR  298 (523)
T ss_dssp             SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred             cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            56667799999999999999999999998874  2221 12223355569999999999999999999999984

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=92.05  E-value=0.56  Score=31.30  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=28.8

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNE   41 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~   41 (233)
                      .++...|-.+..-+..+...|+|++||.++++|+.+..+
T Consensus         9 ~spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A            9 EGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            356666777777777777788888888888888776543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.46  E-value=2.9  Score=30.00  Aligned_cols=85  Identities=18%  Similarity=0.011  Sum_probs=56.3

Q ss_pred             cCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767           42 CGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD  119 (233)
Q Consensus        42 ~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~  119 (233)
                      .|.+...+..-.-.|.+.. . .+..++|..++..+.   ..  +...-.|+.-++..+.++|+|++|..+.+..+.+  
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~---~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--  107 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---EA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--  107 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---HC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--
Confidence            4555554444444445544 2 566788888877654   22  2223479999999999999999999999988853  


Q ss_pred             HccCcchHHHhHHHHH
Q 026767          120 KCNATNSQCKAYLSAI  135 (233)
Q Consensus       120 ~~~~~~~~a~~~~~lg  135 (233)
                        .....++..+..+.
T Consensus       108 --eP~N~QA~~Lk~~I  121 (134)
T 3o48_A          108 --ERNNKQVGALKSMV  121 (134)
T ss_dssp             --CTTCHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHH
Confidence              44455666554443

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=91.33  E-value=0.83  Score=35.30  Aligned_cols=94  Identities=6%  Similarity=-0.005  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchH
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQ  165 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e  165 (233)
                      +...-+.-+|.++...++|.+|.+.+.+|...+.+.+ ....-.++.-+..+.+-+|+.+. ...+++.-.         
T Consensus        12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~-~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~~~~---------   80 (203)
T 3t5x_A           12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS-QKNKRMILIYLLPVKMLLGHMPT-VELLKKYHL---------   80 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHTTCEEC-HHHHHHTTC---------
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH-HHHHHHHHHHHHHHHHHcCCCCC-HHHhhhCch---------
Confidence            3445677899999999999999999999998876543 22334456777777788888543 333343211         


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          166 NRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       166 ~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                       .....|..+++.||...+...+++.
T Consensus        81 -~~y~~L~~Avr~Gdl~~f~~~l~~~  105 (203)
T 3t5x_A           81 -MQFAEVTRAVSEGNLLLLHEALAKH  105 (203)
T ss_dssp             -GGGHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             -hHHHHHHHHHHhCCHHHHHHHHHHh
Confidence             1245788899999999999998877

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.17  E-value=1.5  Score=42.73  Aligned_cols=100  Identities=13%  Similarity=0.062  Sum_probs=73.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------cCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHH
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNE-----------------CGRSQPASDALAKAARALE-DAVPEDAIQLYTDA   74 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~-----------------~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~A   74 (233)
                      .-.|.+|...|++++|.++|++|..-...                 .........-|.++..+++ .+.++.++++.+.|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45688999999999999999988542211                 1111223456778888898 79999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 026767           75 CIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLR  113 (233)
Q Consensus        75 l~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~  113 (233)
                      ++.... ++.......+.++=..++.+|+|++|...+..
T Consensus       926 i~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          926 DASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            986443 34433445778888889999999999887643

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.60  E-value=3.9  Score=30.83  Aligned_cols=76  Identities=13%  Similarity=0.038  Sum_probs=49.4

Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHH
Q 026767           54 KAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLS  133 (233)
Q Consensus        54 ~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~  133 (233)
                      +....++.|+++.|.+..+.       .++.    ..+..+|...+..|+++-|..+|+++..              +..
T Consensus        11 rF~LAL~lg~l~~A~e~a~~-------l~~~----~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------------~~~   65 (177)
T 3mkq_B           11 RFDLALEYGNLDAALDEAKK-------LNDS----ITWERLIQEALAQGNASLAEMIYQTQHS--------------FDK   65 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-------HCCH----HHHHHHHHHHHHTTCHHHHHHHHHHTTC--------------HHH
T ss_pred             HHHHHHhcCCHHHHHHHHHH-------hCCH----HHHHHHHHHHHHcCChHHHHHHHHHhCC--------------HHH
Confidence            34444556777777665433       2332    4788999999999999999999987653              234


Q ss_pred             HHHHHHhhCCHHHHHHHHHHh
Q 026767          134 AIIVYLYANDFKQAEKCYNDC  154 (233)
Q Consensus       134 lg~~~~~~gd~~~A~~~~~~a  154 (233)
                      +..+|...|+.+.-.+.-+.+
T Consensus        66 L~~Ly~~tg~~e~L~kla~iA   86 (177)
T 3mkq_B           66 LSFLYLVTGDVNKLSKMQNIA   86 (177)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHH
Confidence            555566666665555444444

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=90.53  E-value=1.2  Score=29.67  Aligned_cols=35  Identities=9%  Similarity=-0.016  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~  120 (233)
                      ..+..+...++-+++.|+|++||++.+++.....+
T Consensus        13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            34455666677777777777777777777654433

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=89.38  E-value=2.7  Score=40.53  Aligned_cols=98  Identities=9%  Similarity=0.052  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767           89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC  168 (233)
Q Consensus        89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~  168 (233)
                      .+++.+-..|++.|+.++|..+|.+......+ |..+. ..+|+.+...+.+.|+.++|.+.|++.... ++  ......
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~--~PDvvT  202 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA-GL--TPDLLS  202 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TC--CCCHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC--CCcHHH
Confidence            57999999999999999999999876543221 22233 358999999999999999999999987522 11  112334


Q ss_pred             HHHHHHHH-hcCC-HHHHHHHHhhc
Q 026767          169 ATKLISAY-TEGD-VEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~~a~-~~gd-~~~a~~~~~~~  191 (233)
                      .+.|+..+ ..|. .+.|.+.+++-
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM  227 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQM  227 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45555555 5565 45665555543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.12  E-value=1.8  Score=28.28  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=12.6

Q ss_pred             hCCHHHHHHHHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .|++++|+.+|.+|++.+..
T Consensus        32 ~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           32 EGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHH
Confidence            46666666666666666554

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=85.63  E-value=2.8  Score=27.32  Aligned_cols=19  Identities=21%  Similarity=0.135  Sum_probs=10.8

Q ss_pred             hCCHHHHHHHHHHHHHHHH
Q 026767           61 DAVPEDAIQLYTDACIMLE   79 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~   79 (233)
                      .|++++|+.+|..|++++.
T Consensus        26 ~g~y~eAl~~Y~~aie~l~   44 (85)
T 2v6x_A           26 ATQYEEAYTAYYNGLDYLM   44 (85)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence            3555566666666665544

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=85.57  E-value=2.8  Score=27.94  Aligned_cols=20  Identities=20%  Similarity=0.282  Sum_probs=11.1

Q ss_pred             hCCHHHHHHHHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .|++++|+.+|..|+++|..
T Consensus        28 ~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           28 ESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHH
Confidence            35555555555555555543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=85.40  E-value=1.5  Score=30.66  Aligned_cols=20  Identities=30%  Similarity=0.355  Sum_probs=13.9

Q ss_pred             hCCHHHHHHHHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .|+|++|+.+|..|+++|..
T Consensus        31 ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A           31 AGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHH
Confidence            46777777777777776554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.05  E-value=5.8  Score=38.58  Aligned_cols=100  Identities=12%  Similarity=0.088  Sum_probs=71.8

Q ss_pred             HHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-----------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 026767           53 AKAARALE-DAVPEDAIQLYTDACIMLEEDD-----------------KEQMAFDLYRAATNVYIKLEKYADAATFLLRW  114 (233)
Q Consensus        53 ~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-----------------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~a  114 (233)
                      .-+|.++. .|++++|.++|++|.......+                 .......-|..+..++-+.+-++.++++.+.|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44688888 7999999999998853322111                 11112245778888888999999999999999


Q ss_pred             HHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHH
Q 026767          115 GLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYND  153 (233)
Q Consensus       115 l~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~  153 (233)
                      +..... ++.......+.++-..++..|+|++|-..+-.
T Consensus       926 i~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          926 DASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            876322 23333444678899999999999999877754

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=84.52  E-value=7.6  Score=27.04  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNE   41 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~   41 (233)
                      ....|..+..-|.-.-..|++++|+.+|..|+++|..
T Consensus        14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A           14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            4566666666676666777777777777777777654

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=84.29  E-value=7.6  Score=33.79  Aligned_cols=131  Identities=7%  Similarity=-0.069  Sum_probs=81.7

Q ss_pred             HHHHHHhh-hCCHHHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HhHcc---
Q 026767           53 AKAARALE-DAVPEDAIQLYTDACIMLEE-----DDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA-ADKCN---  122 (233)
Q Consensus        53 ~~lg~~~~-~g~~~~A~~~~~~Al~~~~~-----~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~---  122 (233)
                      +++=.+|. .+.+..+-..+ ++++-...     .-.....+.-+.-+|.++...++|.+|.+++..|... +....   
T Consensus       180 n~L~kiYFkl~~~~lckni~-k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~  258 (455)
T 3t5v_B          180 NKLNNIYFRIESPQLCSNIF-KNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQ  258 (455)
T ss_dssp             HHHHHHHHHSSCCTTHHHHH-HTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHH-HHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccch
Confidence            34445555 46665554444 33333211     1133455567788999999999999999999999987 65431   


Q ss_pred             -CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          123 -ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       123 -~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                       .....-.++.-+..+.+-+|+++.-. .+++..      ...=......|..+++.||...+...+++.
T Consensus       259 ~~~~n~~~ILkyLIpv~LLlG~~P~~~-ll~k~~------~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~  321 (455)
T 3t5v_B          259 AITRNGTRILNYMIPTGLILGKMVKWG-PLRPFL------SQETIDNWSVLYKHVRYGNIQGVSLWLRQN  321 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCBCHH-HHGGGS------CHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHHHHHHcCCCCCHH-HHcccc------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence             12223345566667777778764332 233311      011122356788899999999999999887

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=84.24  E-value=3.3  Score=26.98  Aligned_cols=20  Identities=35%  Similarity=0.483  Sum_probs=13.1

Q ss_pred             hCCHHHHHHHHHHHHHHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .|++++|+.+|.+|++.|..
T Consensus        24 ~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A           24 EGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHH
Confidence            46666777777777666554

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=83.95  E-value=1.7  Score=28.39  Aligned_cols=21  Identities=14%  Similarity=-0.129  Sum_probs=14.2

Q ss_pred             HhccHHHHHHHHHHHHHHHhH
Q 026767          100 KLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~  120 (233)
                      +.|+|.+|+.+|.++++.+..
T Consensus        31 ~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           31 KEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHH
Confidence            466777777777777766554

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=83.59  E-value=15  Score=31.12  Aligned_cols=102  Identities=17%  Similarity=0.181  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h--CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767           24 NWREVADFYRKASELYNECGRSQPASDALAKAARALE-D--AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK  100 (233)
Q Consensus        24 ~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~--g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~  100 (233)
                      |.-|-..+-++-+=+.-..|....--.++.|+|.+-+ .  .....++..|.+|+...+..=..... .-+.-+|..+.+
T Consensus       230 Ds~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv-YPYtylgGy~yR  308 (472)
T 3re2_A          230 DSIQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI-YPYTYLGGYYYR  308 (472)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS-HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc-cchhhhhhhhhh
Confidence            3446667778888888899998888889999999877 3  33344899999999887764322222 467778889999


Q ss_pred             hccHHHHHHHHHHHHHHHhHccCcch
Q 026767          101 LEKYADAATFLLRWGLAADKCNATNS  126 (233)
Q Consensus       101 ~g~~~~A~~~~~~al~~~~~~~~~~~  126 (233)
                      .++|.+|+.++-.+....+.-+-.+.
T Consensus       309 ~~~~reAl~~WA~Aa~Vi~~YNY~re  334 (472)
T 3re2_A          309 KKKYYEAIASWVDAGYVAGKYNYSKD  334 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCcc
Confidence            99999999999999988776554433

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=83.20  E-value=18  Score=31.17  Aligned_cols=105  Identities=15%  Similarity=0.103  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767           25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-D---AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK  100 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~  100 (233)
                      --|-..+-++-+=+.-..|....--.++.|+|.+-+ .   |++ .++..|.+|+...+..=..... .-+.-+|-.+++
T Consensus       253 s~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~-~~~~L~~~AI~sa~~~Y~n~Hv-YPYtYlgGy~yR  330 (550)
T 3u84_A          253 SLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRP-DPLTLYHKGIASAKTYYRDEHI-YPYMYLAGYHCR  330 (550)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCC-CHHHHHHHHHHHHHHHSTTCCS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCC-CHHHHHHHHHHHHHHHhccCCc-cceeecchhhhh
Confidence            345666668888888889998888889999999876 3   443 4889999999887764322222 467788999999


Q ss_pred             hccHHHHHHHHHHHHHHHhHccCcchHHHhH
Q 026767          101 LEKYADAATFLLRWGLAADKCNATNSQCKAY  131 (233)
Q Consensus       101 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~  131 (233)
                      .++|.+|+.++-.+..+.+.-+..+.--..|
T Consensus       331 ~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIY  361 (550)
T 3u84_A          331 NRNVREALQAWADTATVIQDYNYCREDEEIY  361 (550)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCCCGGGHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCcchHHHH
Confidence            9999999999999998887665444333333

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=83.01  E-value=3.2  Score=27.24  Aligned_cols=18  Identities=17%  Similarity=0.163  Sum_probs=9.3

Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 026767           62 AVPEDAIQLYTDACIMLE   79 (233)
Q Consensus        62 g~~~~A~~~~~~Al~~~~   79 (233)
                      |++++|+.+|..|++++.
T Consensus        30 g~y~eAl~lY~~Aie~ll   47 (86)
T 4a5x_A           30 SRYPQALVCYQEGIDLLL   47 (86)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            455555555555555444

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=83.00  E-value=2.6  Score=27.48  Aligned_cols=21  Identities=14%  Similarity=-0.146  Sum_probs=13.8

Q ss_pred             HhccHHHHHHHHHHHHHHHhH
Q 026767          100 KLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~  120 (233)
                      ..|+|.+|+.+|..+++.+..
T Consensus        25 ~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A           25 TATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHH
Confidence            356777777777777766554

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=82.55  E-value=2.8  Score=27.57  Aligned_cols=21  Identities=10%  Similarity=-0.140  Sum_probs=15.9

Q ss_pred             HhccHHHHHHHHHHHHHHHhH
Q 026767          100 KLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~  120 (233)
                      ..|+|.+|+.+|..+++.+..
T Consensus        28 ~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           28 SESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHH
Confidence            467888888888888877664

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=82.22  E-value=2.8  Score=27.28  Aligned_cols=21  Identities=24%  Similarity=0.101  Sum_probs=14.9

Q ss_pred             HhccHHHHHHHHHHHHHHHhH
Q 026767          100 KLEKYADAATFLLRWGLAADK  120 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~  120 (233)
                      +.|+|.+|+.+|.++++.+..
T Consensus        23 ~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A           23 KEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHH
Confidence            467777777777777776654

>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*

Probab=81.23  E-value=14  Score=31.79  Aligned_cols=110  Identities=16%  Similarity=0.186  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHh------------hhC--CHHHHHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNE----CGRSQPASDALAKAARAL------------EDA--VPEDAIQL   70 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~----~g~~~~~a~~l~~lg~~~------------~~g--~~~~A~~~   70 (233)
                      -..+.+++..+...+++.||.-++-.++.+.-+    .|...--...+.++.--+            ...  .-+.-.+.
T Consensus        11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~l   90 (428)
T 2wm9_A           11 KTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMEL   90 (428)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHH
Confidence            456788888888888888888888755544322    111000000000000000            000  11222345


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           71 YTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        71 ~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      +++|+++|...+....+..++..+...|-...+|.+-..++.+...++
T Consensus        91 l~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y  138 (428)
T 2wm9_A           91 LEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAY  138 (428)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            666666666666555555556666666655556655555554444433

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.02  E-value=24  Score=29.79  Aligned_cols=182  Identities=12%  Similarity=0.090  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHH
Q 026767           29 ADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD-----------KEQMAFDLYRAATN   96 (233)
Q Consensus        29 ~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-----------~~~~~~~~l~~lg~   96 (233)
                      ++.|+.-+.-|...=++...+..   +..+.. ..++++|+++.++.........           .......+...++.
T Consensus        59 ~~ly~~fi~~f~~kin~L~lv~~---~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~  135 (393)
T 4b4t_O           59 LRLYDNFVSKFYDKINQLSVVKY---LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIAR  135 (393)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHT---THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHH---HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHH
Confidence            45555555555544444333222   122334 4789999999887654433211           11223356778899


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHhHccCc--chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC---CCCchH--HHHH
Q 026767           97 VYIKLEKYADAATFLLRWGLAADKCNAT--NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA---FLRSDQ--NRCA  169 (233)
Q Consensus        97 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~---~~~~~e--~~~l  169 (233)
                      .|...++.++|..+++++-......++.  ...+..|...+..|...+++..+...+-.++....   .....+  ..+.
T Consensus       136 ~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~  215 (393)
T 4b4t_O          136 TYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAY  215 (393)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHH
Confidence            9999999999999999999887776543  34566677888888999999998888877763211   112222  2233


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcccccc-----hHHHHHHhccCCCCchh
Q 026767          170 TKLISAYTEGDVEEIKRVAQSSAISNL-----DHVIIKLARKLPTGDVS  213 (233)
Q Consensus       170 ~~L~~a~~~gd~~~a~~~~~~~~~~~l-----d~~~~~l~~~l~~~~~~  213 (233)
                      .-+..++...+.--+.+.+..+.+..|     ..|...|..-...|++.
T Consensus       216 ~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~  264 (393)
T 4b4t_O          216 DLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFD  264 (393)
T ss_dssp             HHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHH
Confidence            333344444445555666666644444     13566666655556555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	7e-07

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (109), Expect = 7e-07
 Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 45/246 (18%)

Query: 7   DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED----- 61
           +AA     AA + +         D + KA++   + G    A +   +A +  +      
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94

Query: 62  -------------------------------------AVPEDAIQLYTDACIMLEEDDKE 84
                                                     AI  Y  A     +D   
Sbjct: 95  NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154

Query: 85  QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC-KAYLSAIIVYLYAND 143
            ++   +    ++     +Y +A+    +   ++     +       +L   +  L A D
Sbjct: 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD 214

Query: 144 FKQAEKCYNDCSQVD-AFLRSDQNRCATKLISAYTEGDVEEIKR-VAQSSAISNLDHVII 201
              A +   +    D  F  S ++     LI A  EGD E++     +      LD   I
Sbjct: 215 AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274

Query: 202 KLARKL 207
            +  K+
Sbjct: 275 TILNKI 280

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.94
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.9
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.61
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.58
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.55
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.54
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.48
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.37
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.36
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.35
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.33
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.32
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.32
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.3
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.3
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.29
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.26
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.26
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.21
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.19
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.18
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.16
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.03
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.01
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.91
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.81
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.76
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.65
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.65
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.49
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.45
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.37
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.26
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.19
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.08
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.07
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.55
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.48
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.32
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.81
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	94.47
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.43
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.2
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.67

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.7e-25  Score=182.58  Aligned_cols=206  Identities=17%  Similarity=0.153  Sum_probs=162.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHH
Q 026767            2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLE   79 (233)
Q Consensus         2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~   79 (233)
                      ++++.+++.+|.++|.+|..+|++++|+.+|++++.++...|++..++.++.++|.++. . |++++|+++|++|++++.
T Consensus        70 ~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_          70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            46677888888888888888888888888888888888888888888888888888886 4 888888888888888888


Q ss_pred             hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc-hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-
Q 026767           80 EDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN-SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-  157 (233)
Q Consensus        80 ~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-  157 (233)
                      ..+++...+.++.++|.++..+|+|++|+.+|++++......+... .....+.++|.+++..|++..|...+++++.+ 
T Consensus       150 ~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             hcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            8888888888888888888888888888888888887765554333 33345678888888888888888888888844 


Q ss_pred             CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc-ccccchHHHHHHhccC
Q 026767          158 DAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS-AISNLDHVIIKLARKL  207 (233)
Q Consensus       158 ~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l  207 (233)
                      +.|..+++..++..|+.++..+|.+.+.+++..+ .+.++|+|...++.++
T Consensus       230 ~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~  280 (290)
T d1qqea_         230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI  280 (290)
T ss_dssp             --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            5677788888899999999888888888888888 7888898877776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.5e-21  Score=160.72  Aligned_cols=187  Identities=13%  Similarity=0.090  Sum_probs=168.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +..++..|.++|++|+.++++++|+.+|++|++++.+.+++...+.++.++|.+|. .|++++|+++|+++++++...++
T Consensus        33 ~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~  112 (290)
T d1qqea_          33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ  112 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc
Confidence            46789999999999999999999999999999999999999999999999999999 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-C-
Q 026767           84 EQMAFDLYRAATNVYIK-LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-F-  160 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~-  160 (233)
                      ....+.++.++|.++.. .|++++|+++|++++.++...+.+...+.++.++|.++..+|+|.+|...|++++.... . 
T Consensus       113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            99999999999999865 69999999999999999999988888899999999999999999999999999984432 2 


Q ss_pred             -CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          161 -LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       161 -~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                       ..+.....+..++..+ ..||++.+...++++
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence             2334444555566555 789999999999998

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.61  E-value=5.6e-14  Score=104.59  Aligned_cols=125  Identities=12%  Similarity=-0.003  Sum_probs=104.1

Q ss_pred             HHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHH
Q 026767            7 DAAKHMESA--AALAKELHNWREVADFYRKASELYNECGRS------QPASDALAKAARALE-DAVPEDAIQLYTDACIM   77 (233)
Q Consensus         7 ~~a~~~~~~--g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~------~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~   77 (233)
                      ..+.++..+  |..+...|+|++|+..|++|+++....++.      ...+.++.++|.+|. .|++++|+..|++|+.+
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            467777777  677778899999999999999999887763      246789999999999 89999999999999999


Q ss_pred             HHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH
Q 026767           78 LEEDDK-----EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY  131 (233)
Q Consensus        78 ~~~~g~-----~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~  131 (233)
                      ++....     ......+++++|.+|..+|++++|+..|++++++..+..........+
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~  143 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  143 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHH
Confidence            987653     223446789999999999999999999999999998877665444443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.3e-13  Score=109.37  Aligned_cols=101  Identities=9%  Similarity=-0.076  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ....+.++.++|.+|...|++++|+.+|++|+.+.     | .-+.++.++|.++. .|++++|+.+|++++++.+... 
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-----p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-  105 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----P-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-  105 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-----C-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh-
Confidence            45678999999999999999999999999999883     2 24678999999999 8999999999999999876532 


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                           .++.++|.++..+|++++|+..|++++.+
T Consensus       106 -----~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         106 -----YAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -----hhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence                 47899999999999999999999999875

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.4e-12  Score=106.06  Aligned_cols=149  Identities=11%  Similarity=0.005  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      +...+.++..+|.+|...|++++|+.+|++++.+....++....+.++.+++.++. .|++..++..+.+++.+.+....
T Consensus        47 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~  126 (366)
T d1hz4a_          47 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL  126 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Confidence            44556788999999999999999999999999999999999999999999999999 79999999999999999887653


Q ss_pred             --hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767           84 --EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC  154 (233)
Q Consensus        84 --~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a  154 (233)
                        ....+.++..+|.++...|+++.|..++++++......+... ...++...+.++...|++.++...+.++
T Consensus       127 ~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a  198 (366)
T d1hz4a_         127 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRL  198 (366)
T ss_dssp             TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence              333446778889999999999999998888877654433221 2223333334444444444444433333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=7.7e-13  Score=107.58  Aligned_cols=183  Identities=13%  Similarity=0.011  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      -++...-.|.++...|++++|+.+|++|+..... ++....+.++..+|.++. .|++++|+.+|++++++.+..++...
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            3455555688888999999999999999987644 344456788999999999 89999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc--chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-CCCc
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT--NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-FLRS  163 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~~~~  163 (233)
                      ...++.+++.++...|++..|...+.+++.+.......  ...+..+..+|.++...|++..|...++++..... ....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence            88999999999999999999999999999988776544  44556678999999999999999999999984433 3344


Q ss_pred             hHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          164 DQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       164 ~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .....+..++..+ ..++...+...+.++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  198 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLARGDLDNARSQLNRL  198 (366)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4556667777766 789998888887776

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.1e-13  Score=105.00  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      .+.+-|..+...|++++|++.|.+       ..++.  +.++.++|.+|. .|++++|+.+|++|+++.+..      +.
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~-------i~~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~------~~   71 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSA-------VQDPH--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AV   71 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-------SSSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHh-------cCCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh------hh
Confidence            344559999999999999988865       34443  467899999999 899999999999999986542      36


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc----------CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCN----------ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      ++.++|.++.++|+|++|+..|++++...+...          .......+++++|.++...|++.+|.+.|++++.+.
T Consensus        72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            899999999999999999999999997644321          112345778999999999999999999999998654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.5e-13  Score=111.11  Aligned_cols=159  Identities=14%  Similarity=0.072  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      ++..+|.++...|++++|+..|+++..+.      ...+..+..+|.++. .|++++|+.+|++++++.+..      ..
T Consensus       205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~  272 (388)
T d1w3ba_         205 AYINLGNVLKEARIFDRAVAAYLRALSLS------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PD  272 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HH
T ss_pred             HHHHHhhhhhccccHHHHHHHHHHhHHHh------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HH
Confidence            34444555555555555555555544431      122445667788888 788999999999888775432      25


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767           90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA  169 (233)
Q Consensus        90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l  169 (233)
                      ++.++|.++...|++.+|+..|++++..      .+.....+..++.++...|++++|++.|++++.+.    +....++
T Consensus       273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~  342 (388)
T d1w3ba_         273 AYCNLANALKEKGSVAEAEDCYNTALRL------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAH  342 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC----TTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhcc------CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHH
Confidence            7788899999999999999999888764      23345677889999999999999999999998543    1235678


Q ss_pred             HHHHHHH-hcCCHHHHHHHHhhc
Q 026767          170 TKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       170 ~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..+|.++ ..|+.++|...++++
T Consensus       343 ~~la~~~~~~g~~~~A~~~~~~a  365 (388)
T d1w3ba_         343 SNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            8899988 789999999999988

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.2e-13  Score=111.53  Aligned_cols=167  Identities=11%  Similarity=0.018  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-----
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD-----   82 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-----   82 (233)
                      +.++..+|.+|...|++++|+.+|++|+.+.     | .-...+.++|.++. .|++++|++.|++++.+.+...     
T Consensus        53 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  126 (323)
T d1fcha_          53 MEAWQYLGTTQAENEQELLAISALRRCLELK-----P-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP  126 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHhhhccc-----c-ccccccccccccccccccccccccchhhHHHhccchHHHHHh
Confidence            5678889999999999999999999998873     2 23467788888888 7888888888888775433210     


Q ss_pred             ----------------------------------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767           83 ----------------------------------------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN  122 (233)
Q Consensus        83 ----------------------------------------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  122 (233)
                                                              .....+.++..+|.++...|++++|+.+|++++...    
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----  202 (323)
T d1fcha_         127 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR----  202 (323)
T ss_dssp             --------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             hhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc----
Confidence                                                    000012467788999999999999999999998752    


Q ss_pred             CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          123 ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       123 ~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                        +..+.++..+|.++..+|++++|.++|++++.+.    +....++..||.++ ..|+++.|...++++
T Consensus       203 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  266 (323)
T d1fcha_         203 --PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ----PGYIRSRYNLGISCINLGAHREAVEHFLEA  266 (323)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             --cccccchhhhhhcccccccchhHHHHHHHHHHHh----hccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              2345678999999999999999999999998542    12356788999998 899999999999887

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8e-14  Score=115.02  Aligned_cols=150  Identities=17%  Similarity=0.092  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      +..+..+|.++...|++++|+.+|++++++.     + .-..++.++|.++. .|++++|++.|++++...+..      
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------  304 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-----P-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH------  304 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----S-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc------
Confidence            4567889999999999999999999998763     2 23577899999999 899999999999998876542      


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNR  167 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~  167 (233)
                      ..++..+|.++...|++++|+.+|++++++      .+..+.+++++|.++..+|++++|+.+|++++.+.    +....
T Consensus       305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~----P~~~~  374 (388)
T d1w3ba_         305 ADSLNNLANIKREQGNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFAD  374 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----TTCHH
T ss_pred             chhhhHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHH
Confidence            357889999999999999999999999864      23346788999999999999999999999999653    12256


Q ss_pred             HHHHHHHHH-hcCC
Q 026767          168 CATKLISAY-TEGD  180 (233)
Q Consensus       168 ~l~~L~~a~-~~gd  180 (233)
                      ++..||.++ +.||
T Consensus       375 a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         375 AYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCC
Confidence            788999988 6776

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.48  E-value=1.4e-12  Score=96.73  Aligned_cols=129  Identities=9%  Similarity=-0.093  Sum_probs=99.6

Q ss_pred             HHHHHHHH--HHHhh-hCCHHHHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767           48 ASDALAKA--ARALE-DAVPEDAIQLYTDACIMLEEDDK------EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA  118 (233)
Q Consensus        48 ~a~~l~~l--g~~~~-~g~~~~A~~~~~~Al~~~~~~g~------~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~  118 (233)
                      .+.++..+  |..+. .|+|++|++.|++|+++.+..++      ....+.+++++|.+|..+|+|++|+..+++++.++
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            45555555  55666 69999999999999999998764      33456799999999999999999999999999998


Q ss_pred             hHccCc-----chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC-CC--CCchHHHHHHHHHHHH
Q 026767          119 DKCNAT-----NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD-AF--LRSDQNRCATKLISAY  176 (233)
Q Consensus       119 ~~~~~~-----~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-~~--~~~~e~~~l~~L~~a~  176 (233)
                      .+....     .....+++++|.+|..+|++++|...|++++.+. ..  ........+..+.+.+
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l  151 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI  151 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHH
Confidence            765443     2345678999999999999999999999998542 11  2233344555554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.7e-12  Score=93.27  Aligned_cols=104  Identities=20%  Similarity=0.154  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-ChH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD-KEQ   85 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-~~~   85 (233)
                      .|..+.+.|+.|...|+|++|+.+|++|+++.     | ..+.++.++|.+|. .|++++|++.|++|+++.+... ...
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-----p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-----P-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----c-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            57788899999999999999999999999873     3 23568999999999 7999999999999999988765 345


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ..+.++.++|.++..++++++|+.+|++++..
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            56778999999999999999999999998865

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3e-12  Score=104.55  Aligned_cols=163  Identities=10%  Similarity=0.056  Sum_probs=132.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767           13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY   91 (233)
Q Consensus        13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l   91 (233)
                      .+.|..+...|++++|+.+|+++++..     | ..+.++..+|.++. .|++++|+.+|.+|+++.+..      ..++
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~   90 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-----P-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN------QTAL   90 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc------cccc
Confidence            467888999999999999999998753     3 34678999999999 799999999999999986542      3578


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhH---------------------------------------------ccCcch
Q 026767           92 RAATNVYIKLEKYADAATFLLRWGLAADK---------------------------------------------CNATNS  126 (233)
Q Consensus        92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------------~~~~~~  126 (233)
                      .++|.++...|++++|++.+++++.+...                                             ......
T Consensus        91 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~  170 (323)
T d1fcha_          91 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI  170 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred             ccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            89999999999999999999987753211                                             011122


Q ss_pred             HHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          127 QCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       127 ~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      .+.++..+|.++...|++++|+..|++++....    ....++..+|.++ ..|+.+.|...++++
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP----NDYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhccccccccccc----ccccchhhhhhcccccccchhHHHHHHHH
Confidence            345678899999999999999999999984321    2356788899988 899999999999998

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.7e-12  Score=91.46  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc-
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT-  124 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-  124 (233)
                      ..|..+.++|..+. .|+|++|+.+|++|+++.+..      ..++.++|.+|..+|+|++|+..|++++.+....... 
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~   75 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHH
Confidence            35778899999999 899999999999999986542      3589999999999999999999999999987765443 


Q ss_pred             chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ...+.+|..+|.++..++++.+|+.+|++++..
T Consensus        76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            455789999999999999999999999999854

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-11  Score=92.81  Aligned_cols=107  Identities=7%  Similarity=-0.065  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchH---------HHHHHHHHHHHhh-hCCHHHHHHHHHHH
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQP---------ASDALAKAARALE-DAVPEDAIQLYTDA   74 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~---------~a~~l~~lg~~~~-~g~~~~A~~~~~~A   74 (233)
                      ....|..+.+.|+.+...|++++|+.+|++|+.++........         ...++.++|.+|. .|++++|+.+++++
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            3456778888888888888888888888888887654433221         2234445555555 45555555555555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           75 CIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        75 l~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      +.+-+..      ..++.++|.++..+|+|++|+..|++++.+
T Consensus        89 l~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          89 LELDSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhccccc------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            5553321      234555555555555555555555555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-11  Score=92.79  Aligned_cols=105  Identities=14%  Similarity=0.086  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK---------EQMAFDLYRAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~---------~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                      ..+..+.+.|..+. .|++++|+.+|++|+.+++....         ......++.++|.+|.++|+|++|+.++++++.
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            46788899999998 89999999999999999886552         223346788999999999999999999999997


Q ss_pred             HHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          117 AADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       117 ~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      +      .+....+++.+|.++..+|++++|+..|++++.+
T Consensus        91 ~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          91 L------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             H------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             c------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            6      2345678999999999999999999999999854

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.6e-11  Score=89.88  Aligned_cols=99  Identities=15%  Similarity=0.057  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ   85 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~   85 (233)
                      ..|..+..-|+.|.+.|+|++|+.+|++|+.+.     + .-+.++.++|.++. .|++++|+..|++|+++.+..    
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~----   77 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-----P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccc-----h-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc----
Confidence            567778888888888888888888888888873     2 34677888888888 788888888888888876542    


Q ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                        ..++.++|.++..+|+|++|+..|++++.+
T Consensus        78 --~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          78 --IKGYYRRAASNMALGKFRAALRDYETVVKV  107 (159)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence              256788888888888888888888888865

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.4e-11  Score=100.17  Aligned_cols=134  Identities=8%  Similarity=-0.032  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC-CHHHHHHHHHHHHHHHHhcCC
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DA-VPEDAIQLYTDACIMLEEDDK   83 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g-~~~~A~~~~~~Al~~~~~~g~   83 (233)
                      ..-+.++..+|.++...+.+++|+.++++|+++-     | .-..++.+.|.++. .| ++++|+.++.+++++.+..  
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-----P-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~--  111 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-----A-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--  111 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-----C-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh--
Confidence            3567899999999999999999999999999982     3 45678999999988 55 6999999999999987753  


Q ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                          ..++.++|.++..+|++++|+++|.+++.+      .+....++.++|.++...|++.+|+.+|++++.+
T Consensus       112 ----~~a~~~~~~~~~~l~~~~eAl~~~~kal~~------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         112 ----YQVWHHRRVLVEWLRDPSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             ----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             ----hhHHHHHhHHHHhhccHHHHHHHHhhhhhh------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                368999999999999999999999999976      3334568999999999999999999999999954

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2e-11  Score=93.63  Aligned_cols=128  Identities=9%  Similarity=0.059  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      +..+.+-|..+. .|++++|++.|.++       .+..  ..++.++|.+|..+|+|++|+++|++++++      .+..
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i-------~~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l------dp~~   69 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV-------QDPH--SRICFNIGCMYTILKNMTEAEKAFTRSINR------DKHL   69 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS-------SSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc-------CCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHH------hhhh
Confidence            344456688888 79999999888753       2222  257899999999999999999999999976      2344


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCC-----------CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAF-----------LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~-----------~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      +.++.++|.+|..+|++++|++.|++++.. +..           .....+.++..++.++ ..|+++.|.+.++.+
T Consensus        70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            678999999999999999999999999843 211           0123467888999988 799999999999988

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.32  E-value=1.3e-11  Score=91.32  Aligned_cols=118  Identities=10%  Similarity=0.068  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCCh
Q 026767            5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKE   84 (233)
Q Consensus         5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~   84 (233)
                      ....|..+..-|+.+...|+|.+|+.+|++|+.++..........                  .....+.          
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~------------------~~~~~~~----------   64 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI------------------LLDKKKN----------   64 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH------------------HHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHH------------------HHHhhhh----------
Confidence            345667777888888888888888888888887654333222111                  0001111          


Q ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                       ....++.|+|.+|.++|+|++|+.+|++++++      .+....+++.+|.++..+|++.+|+.+|++++.+
T Consensus        65 -~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          65 -IEISCNLNLATCYNKNKDYPKAIDHASKVLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHhhHHHHHHHhcccchhhhhhhccccc------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence             11235666777777777777777777776654      2223456667777777777777777777777644

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=7.5e-12  Score=95.40  Aligned_cols=102  Identities=16%  Similarity=0.059  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .|+.+.+.|+.|...|+|++|+.+|++|+.+-     | .-+.++.++|.+|. .|++++|+.+|++|+++.+..     
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-----p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-----   71 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----P-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-----   71 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-----
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-----
Confidence            36778888999999999999999999998873     3 35788888999888 799999999999988775432     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC  121 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  121 (233)
                       ..++.++|.+|..+|+|++|+..|++++.+....
T Consensus        72 -~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          72 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence             2478889999999999999999999888875443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=9e-12  Score=94.94  Aligned_cols=97  Identities=13%  Similarity=0.019  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      |..+.+.|..+. .|++++|+.+|++|+++.+..      +.++.++|.+|.++|+|++|+.+|++++.+    ......
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l----~p~~~~   73 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVK   73 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHh----CCCcHH
Confidence            566889999999 899999999999999996542      368999999999999999999999999865    334444


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                        +|.++|.+|..+|++++|+..|++++.+
T Consensus        74 --a~~~lg~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          74 --AHFFLGQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             --HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence              5889999999999999999999999843

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.30  E-value=3.3e-11  Score=90.34  Aligned_cols=105  Identities=8%  Similarity=-0.102  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCch---------HHHHHHHHHHHHhh-hCCHHHHHHHHHHHH
Q 026767            6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQ---------PASDALAKAARALE-DAVPEDAIQLYTDAC   75 (233)
Q Consensus         6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~---------~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al   75 (233)
                      ...++.+...|+.+...|++.+|+.+|++|+.+....-...         ..+.++.|+|.+|. .|++++|+.++++++
T Consensus        12 ~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al   91 (168)
T d1kt1a1          12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence            45688899999999999999999999999998764322221         12334455555555 455555555555555


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           76 IMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        76 ~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                      .+.+..      ..++.++|.++..+|+|++|+..|++++.
T Consensus        92 ~l~p~~------~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          92 GLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcccch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            543221      13455555555555555555555555553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=4.9e-11  Score=94.11  Aligned_cols=120  Identities=9%  Similarity=-0.068  Sum_probs=98.2

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 026767           24 NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE  102 (233)
Q Consensus        24 ~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g  102 (233)
                      +.+.++..+++.+..  ..-.....+.++.++|.+|. .|++++|+.+|++|+.+.+..      ..++.++|.++..+|
T Consensus        14 ~~e~al~~~~e~l~~--~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~------~~a~~~lg~~~~~~g   85 (259)
T d1xnfa_          14 QQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAG   85 (259)
T ss_dssp             HHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHhhhchHHHHHH
Confidence            345666666665432  11234568899999999999 899999999999999986542      358999999999999


Q ss_pred             cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          103 KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       103 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ++++|+.+|++++.+.      +....++.++|.++..+|++.+|...|++++.+
T Consensus        86 ~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_          86 NFDAAYEAFDSVLELD------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             CHHHHHHHHHHHHHHC------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHH------hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            9999999999999862      233457899999999999999999999999844

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.2e-11  Score=85.05  Aligned_cols=92  Identities=20%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKA  130 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~  130 (233)
                      +.+.|..+. .|++++|+.+|.+++++.+..      ..++.++|.+|..+|++.+|+..|++++.+.      +....+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~   73 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------PDWGKG   73 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc------hhhhhcccccccccccccccchhhhhHHHhc------cchhhH
Confidence            334444444 455555555555555443321      1345555555555555555555555555431      122234


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          131 YLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       131 ~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ++++|.++..+|++.+|+..|++++
T Consensus        74 ~~~~g~~~~~~~~~~~A~~~~~~a~   98 (117)
T d1elwa_          74 YSRKAAALEFLNRFEEAKRTYEEGL   98 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Confidence            4555555555555555555555555

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.9e-11  Score=83.61  Aligned_cols=98  Identities=10%  Similarity=-0.003  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .++-+.+-|+.+...|++++|+.+|++++.+.     | .-+.++.++|.+|. .|++++|+..|.+++++.+..     
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~-----p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----   70 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-----P-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-----   70 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----C-cchhhhhcccccccccccccccchhhhhHHHhccch-----
Confidence            46778899999999999999999999999873     3 34789999999999 899999999999999997653     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                       ..++.++|.++..+|+|++|+..|++++.+
T Consensus        71 -~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          71 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             -hhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence             257999999999999999999999999965

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.26  E-value=5.6e-11  Score=88.97  Aligned_cols=116  Identities=13%  Similarity=0.104  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ..+..+...|+.+...|++.+|+.+|++|+.+.......                ....+.       .      .....
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~----------------~~~~~~-------~------~~~~~   75 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA----------------AEDADG-------A------KLQPV   75 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH----------------SCHHHH-------G------GGHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh----------------hhhHHH-------H------HhChh
Confidence            455667777777777888888888888877654321000                000000       0      00112


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ...++.++|.++.++|+|++|+..|++++++      .+..+.+++.+|.++..+|++.+|+..|++++.+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhh------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            2345556666666666666666666666543      2233455666666666666666666666666633

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.26  E-value=5.3e-11  Score=87.86  Aligned_cols=115  Identities=14%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..+..+...|..+. .|+|.+|+..|++|+.++..........                   .......           
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~-------------------~~~~~~~-----------   64 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI-------------------LLDKKKN-----------   64 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH-------------------HHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHH-------------------HHHhhhh-----------
Confidence            34556666777766 6888888888888887776544322111                   0001111           


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-cccc
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISN  195 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~  195 (233)
                      ....++.++|.||..+|++.+|++++++++.+..    ....++..+|.++ ..|+++.|...++.+ .+.+
T Consensus        65 ~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p----~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          65 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhhHHHHHHHhcccchhhhhhhccccccc----hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            1234678999999999999999999999995532    1256888999999 899999999999999 4443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.22  E-value=1.2e-10  Score=87.07  Aligned_cols=106  Identities=15%  Similarity=0.144  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD---------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL  116 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g---------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~  116 (233)
                      ..+..+...|..+. .|++.+|+.+|.+|+.+....-         .......++.|+|.+|..+|+|++|+.++++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            35777888899998 8999999999999999876533         1222346788999999999999999999999997


Q ss_pred             HHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767          117 AADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD  158 (233)
Q Consensus       117 ~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~  158 (233)
                      +      .+....+++.+|.++..+|++.+|+..|++++.+.
T Consensus        93 l------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          93 L------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             H------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             c------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            6      23456789999999999999999999999998553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=5.9e-11  Score=82.98  Aligned_cols=92  Identities=11%  Similarity=-0.029  Sum_probs=66.4

Q ss_pred             HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767           52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKA  130 (233)
Q Consensus        52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~  130 (233)
                      ..++|.++. .|++++|+.+|++++.+.+..      ..++..+|.++.+.|++++|+.+|++++.+      .+....+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~a   86 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARML------DPKDIAV   86 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccccccc------chhhhhhhhhhhhhhhHHHhhccccccccc------ccccccc
Confidence            456677777 678888888888887765532      357777888888888888888888877765      2333456


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767          131 YLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus       131 ~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      +..+|.+|...|++.+|.+++++++
T Consensus        87 ~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          87 HAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            7778888888888888888877764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.1e-11  Score=86.84  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767           47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN  125 (233)
Q Consensus        47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  125 (233)
                      ..|..+...|..+. .|+|++|+.+|++++++.+..      ..++.++|.++..+|++++|+..|++++++      .+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------~p   75 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIEL------DK   75 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh------hhhhhhhHHHHHhccccchHHHHHHHHHHH------cc
Confidence            45666777888888 899999999999999986642      368999999999999999999999999976      24


Q ss_pred             hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      ....++..+|.++..+|++.+|...|++++.+
T Consensus        76 ~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          76 KYIKGYYRRAASNMALGKFRAALRDYETVVKV  107 (159)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            44577999999999999999999999999854

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.19  E-value=5.3e-11  Score=83.22  Aligned_cols=96  Identities=14%  Similarity=0.023  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ......+.|.++.+.|++++|+.+|++++.+.     | .-..++..+|.++. .|++++|+.+|++|+++.+..     
T Consensus        15 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----   83 (112)
T d1hxia_          15 YHENPMEEGLSMLKLANLAEAALAFEAVCQKE-----P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-----   83 (112)
T ss_dssp             GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHhhhcccc-----c-ccchhhhhhhhhhhhhhhHHHhhccccccccccccc-----
Confidence            34445678999999999999999999999874     2 24789999999999 799999999999999997653     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWG  115 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al  115 (233)
                       ..++.++|.+|..+|++++|++++++.+
T Consensus        84 -~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          84 -IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence             3688999999999999999999999876

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.8e-10  Score=94.73  Aligned_cols=160  Identities=7%  Similarity=0.041  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            9 AKHMESAAALAKELH-NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         9 a~~~~~~g~~~~~~g-~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      ..+|.+.|.++...| ++++|+.++++++.+.      ..-..++.++|.++. .|++++|+.+|.+++++.+..     
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~------p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-----  145 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-----  145 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH------HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-----
Confidence            467899999998876 5999999999999884      245778999999999 899999999999999986643     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCC------HHHHHHHHHHhhcC-CC
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAND------FKQAEKCYNDCSQV-DA  159 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd------~~~A~~~~~~al~~-~~  159 (233)
                       ..++.++|.++..+|++++|+.+|++++.+      .+....++.++|.++...+.      +.+|+..+.+++.+ |.
T Consensus       146 -~~a~~~~~~~~~~~~~~~~Al~~~~~al~~------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~  218 (315)
T d2h6fa1         146 -YHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH  218 (315)
T ss_dssp             -HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred             -hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC
Confidence             368999999999999999999999999976      33445678899999887765      67899999998843 32


Q ss_pred             CCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767          160 FLRSDQNRCATKLISAYTEGDVEEIKRVAQSS  191 (233)
Q Consensus       160 ~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~  191 (233)
                      .     ..+...++..+.......+...++..
T Consensus       219 ~-----~~~~~~l~~ll~~~~~~~~~~~~~~~  245 (315)
T d2h6fa1         219 N-----ESAWNYLKGILQDRGLSKYPNLLNQL  245 (315)
T ss_dssp             C-----HHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred             c-----hHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            2     34445555556433344444444444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.16  E-value=3.1e-10  Score=84.77  Aligned_cols=66  Identities=9%  Similarity=0.101  Sum_probs=55.5

Q ss_pred             chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccc
Q 026767          125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AIS  194 (233)
Q Consensus       125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~  194 (233)
                      +....++.++|.|+..+|++.+|+..|.+++.+..    .-..++..+|.++ ..|+++.|...++.+ -+.
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p----~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP----SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh----hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34566789999999999999999999999996642    2356788999999 899999999999998 443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.4e-10  Score=76.68  Aligned_cols=86  Identities=7%  Similarity=-0.096  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK-EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS  126 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~-~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  126 (233)
                      +..+.++|.++. .|+|++|+.+|++|+++.+.... ....+.++.++|.++.++|+|++|+.+|++++++      .+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l------~P~   78 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------DPE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh------CcC
Confidence            344568888888 79999999999999998887542 2334578999999999999999999999999876      233


Q ss_pred             HHHhHHHHHHHHHh
Q 026767          127 QCKAYLSAIIVYLY  140 (233)
Q Consensus       127 ~a~~~~~lg~~~~~  140 (233)
                      ...++.+++.+...
T Consensus        79 ~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          79 HQRANGNLKYFEYI   92 (95)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            34567777665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.5e-09  Score=73.42  Aligned_cols=87  Identities=10%  Similarity=-0.028  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      +....++|.++.+.|++++|+.+|++|+.+...... ....+.++.++|.++. .|++++|+.+|++++++.+..     
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~-----   79 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-----   79 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC-----
Confidence            455679999999999999999999999999886544 3456899999999999 799999999999999997653     


Q ss_pred             HHHHHHHHHHHHHHh
Q 026767           87 AFDLYRAATNVYIKL  101 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~  101 (233)
                       ..+++|++.+...+
T Consensus        80 -~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          80 -QRANGNLKYFEYIM   93 (95)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHh
Confidence             24777777655433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=9.1e-10  Score=78.12  Aligned_cols=94  Identities=6%  Similarity=-0.093  Sum_probs=68.8

Q ss_pred             HHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767           54 KAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK---LEKYADAATFLLRWGLAADKCNATNSQCK  129 (233)
Q Consensus        54 ~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~a~  129 (233)
                      ++...+. .+++++|.+.|++|+.+.+..      ..++.++|.++++   .+++.+|+.+|++++..    ...+....
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~   73 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVS------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRD   73 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHH
Confidence            3444455 688888888888888876642      2578888888876   45666788888887742    22233455


Q ss_pred             hHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          130 AYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      +++++|.+|..+|++++|+++|++++.+
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            7888899999999999999999988844

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1e-08  Score=72.46  Aligned_cols=96  Identities=10%  Similarity=0.004  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---CCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767           12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D---AVPEDAIQLYTDACIMLEEDDKEQMA   87 (233)
Q Consensus        12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---g~~~~A~~~~~~Al~~~~~~g~~~~~   87 (233)
                      ++++++.+...+++++|.+.|++|+.+-      ..-..++.++|.++. .   +++++|+..|++++..-.    ....
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~----~~~~   71 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAG------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS----KEEQ   71 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC----HHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC----CchH
Confidence            4677888888999999999999999873      234568899999886 3   566779999988875322    2233


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767           88 FDLYRAATNVYIKLEKYADAATFLLRWGLA  117 (233)
Q Consensus        88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~  117 (233)
                      ..++.++|.+|.++|+|++|+.+|++++.+
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            468999999999999999999999999976

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=9e-09  Score=89.55  Aligned_cols=119  Identities=9%  Similarity=0.069  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 026767           25 WREVADFYRKASELYNEC-GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE  102 (233)
Q Consensus        25 ~~eA~~~~~~A~~l~~~~-g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g  102 (233)
                      ..+|...|+.++..+.+. +-....+..+.++|.++. .|++++|+..|.+++.+...        .++.++|.++...|
T Consensus        95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~LG~l~~~~~  166 (497)
T d1ya0a1          95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--------HCLVHLGDIARYRN  166 (497)
T ss_dssp             HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--------HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHHcc
Confidence            456677777777666542 223345667889999999 79999999999999987652        58899999999999


Q ss_pred             cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767          103 KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV  157 (233)
Q Consensus       103 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~  157 (233)
                      +|++|+.+|++|+.+      .+..+..|+.+|.++...|++.+|..+|.+++.+
T Consensus       167 ~~~~A~~~y~~A~~l------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         167 QTSQAESYYRHAAQL------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             CHHHHHHHHHHHHHH------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             cHHHHHHHHHHHHHH------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            999999999999987      3455678999999999999999999999999854

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=9.3e-09  Score=74.86  Aligned_cols=110  Identities=10%  Similarity=0.025  Sum_probs=79.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h----------CCHHHHHHHHHHHHHHHHhcCChHH
Q 026767           18 LAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D----------AVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus        18 ~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~----------g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .|.+++.|++|+..|++|+.+.     | .-+.++.++|.++. .          +.+++|+.+|++|+++-+..     
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~-----P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-----   74 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSN-----P-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-----   74 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHccHHHHHHHHHHHHhhC-----C-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-----
Confidence            3566778999999999998884     3 45678888888875 3          44678999999999886542     


Q ss_pred             HHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHH
Q 026767           87 AFDLYRAATNVYIKLEK-----------YADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFK  145 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~  145 (233)
                       ..++.++|.+|..+|+           |.+|+++|++++++      .+.....+.+|+.+.-..+-+.
T Consensus        75 -~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l------~P~~~~~~~~L~~~~ka~~~~~  137 (145)
T d1zu2a1          75 -DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE------QPDNTHYLKSLEMTAKAPQLHA  137 (145)
T ss_dssp             -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHTHHHHHH
T ss_pred             -hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc------CCCHHHHHHHHHHHHHHHHHHH
Confidence             3578999999988764           68888888888876      2233445567777754443333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=4.9e-08  Score=73.55  Aligned_cols=120  Identities=12%  Similarity=0.031  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .....+.+.|......|++++|+++|.+|+.+|+  |++..-         + ..+..  +.   .+...+-.      .
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l~~---------~-~~~~w--~~---~~r~~l~~------~   65 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWR--GPVLDD---------L-RDFQF--VE---PFATALVE------D   65 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--SSTTGG---------G-TTSTT--HH---HHHHHHHH------H
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cccccc---------C-cchHH--HH---HHHHHHHH------H
Confidence            3457788899999999999999999999999975  433110         0 00000  00   00000000      1


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS  155 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al  155 (233)
                      ...++.+++.++..+|++++|+.++++++.+.-....      ++..++.++...|++.+|++.|+++.
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~------~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP------LWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1234555566666666666666666666555444432      34555566666666666666666553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2e-08  Score=87.31  Aligned_cols=112  Identities=6%  Similarity=-0.020  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767            8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus         8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .+..+.++|.++...|++++|+..+.+++.+.        ...++.++|.++. .|++++|+.+|++|+++.+..|    
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~----  186 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----  186 (497)
T ss_dssp             ------------------------CCHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch----
Confidence            45567788888888999999999999988764        2468999999999 8999999999999999998876    


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                        .+++++|.++...|++.+|+.+|.+++.+    ..+  -..++.+|+.++.
T Consensus       187 --~~~~~Lg~~~~~~~~~~~A~~~y~ral~~----~~~--~~~a~~nL~~~~~  231 (497)
T d1ya0a1         187 --QPYNQLAILASSKGDHLTTIFYYCRSIAV----KFP--FPAASTNLQKALS  231 (497)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHSS----SBC--CHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--CHHHHHHHHHHHH
Confidence              57999999999999999999999999853    122  2334556655554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=6.4e-09  Score=85.24  Aligned_cols=175  Identities=9%  Similarity=-0.055  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767           10 KHMESAAALAKELH--NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM   86 (233)
Q Consensus        10 ~~~~~~g~~~~~~g--~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~   86 (233)
                      .++.+.|.++...+  ++++|+.++++++.+.     +......+..+|.++. .+.+++|+.++++++++.+..     
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-----~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~-----  177 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-----  177 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-----
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-----chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC-----
Confidence            34555666665544  4678888888887762     3333334556777777 688888888888887775532     


Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc----------cCcchH--------------HHhHHHHHHHHHhhC
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC----------NATNSQ--------------CKAYLSAIIVYLYAN  142 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~--------------a~~~~~lg~~~~~~g  142 (233)
                       ..+++++|.++..+|++++|+..+++++.+....          +.....              ...+..+|.++...|
T Consensus       178 -~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  256 (334)
T d1dcea1         178 -YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQ  256 (334)
T ss_dssp             -HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHh
Confidence             3477888888888888877665555444432211          111111              112234677788888


Q ss_pred             CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHH
Q 026767          143 DFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHV  199 (233)
Q Consensus       143 d~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~  199 (233)
                      ++.+|...+.+++...    .....++..+|.++ ..|+.++|..+++.+ .+++....
T Consensus       257 ~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         257 SELESCKELQELEPEN----KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             HHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             hHHHHHHHHHHHHhhC----chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence            8999999888887433    24567888999999 799999999999998 55554444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=1.7e-07  Score=70.52  Aligned_cols=115  Identities=10%  Similarity=-0.048  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ  127 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  127 (233)
                      -..+.+.|.... .|++++|++.|.+|+.+++..--..               .....-+.   .+...+      ....
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~---------------~~~~~w~~---~~r~~l------~~~~   66 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD---------------LRDFQFVE---PFATAL------VEDK   66 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG---------------GTTSTTHH---HHHHHH------HHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc---------------CcchHHHH---HHHHHH------HHHH
Confidence            345677787777 7999999999999999876321000               00000000   011111      1122


Q ss_pred             HHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       128 a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..++.+++.+++..|++.+|+.++++++...-.    .-.+...|+.++ ..|+..+|...+++.
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~----~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY----REPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            356788999999999999999999999955322    245777888888 899999999999887

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.49  E-value=4.1e-06  Score=65.56  Aligned_cols=60  Identities=15%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-----CCHHHHHHHHHHHHH
Q 026767            9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-----AVPEDAIQLYTDACI   76 (233)
Q Consensus         9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-----g~~~~A~~~~~~Al~   76 (233)
                      ++++.++|..+...+++++|+.+|++|.+.    |+.    .+..++|.+|..     .++..|..+++.+..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g~~----~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----KEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            468899999999999999999999999753    553    467778888874     377888888877653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=5.6e-06  Score=66.63  Aligned_cols=164  Identities=9%  Similarity=0.007  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      .+...+.++...|++++|...|++++..     .+.....++...+.... .|+++.|...|.+++...+...      .
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~-----~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~------~  169 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH------H  169 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT------H
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------H
Confidence            4556667777788888888888888753     22233445666777776 6888888888888876655432      2


Q ss_pred             HHHHHHHHH-HHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767           90 LYRAATNVY-IKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC  168 (233)
Q Consensus        90 ~l~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~  168 (233)
                      .+...+.+. ...|+.+.|..+|++++..+..      ....+...+......|++++|+..|++++.........-..+
T Consensus       170 ~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~------~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~i  243 (308)
T d2onda1         170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI  243 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            444555543 3467888899999988875322      234566777778888999999999999874332221111233


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          169 ATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       169 l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ......-- ..||.+.+....+++
T Consensus       244 w~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         244 WARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44444432 468888888888776

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.45  E-value=2.9e-07  Score=66.63  Aligned_cols=85  Identities=15%  Similarity=-0.020  Sum_probs=67.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767           61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL----------EKYADAATFLLRWGLAADKCNATNSQCKA  130 (233)
Q Consensus        61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~a~~  130 (233)
                      .+.+++|+..|++|+++.+..      +.++.++|.++..+          +.+++|+..|++++++      .+....+
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------~P~~~~a   77 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDEA   77 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcc------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------cchhhHH
Confidence            477899999999999988753      36888999998854          4567899999999876      3444668


Q ss_pred             HHHHHHHHHhhCC-----------HHHHHHHHHHhhcC
Q 026767          131 YLSAIIVYLYAND-----------FKQAEKCYNDCSQV  157 (233)
Q Consensus       131 ~~~lg~~~~~~gd-----------~~~A~~~~~~al~~  157 (233)
                      +.++|.+|..+|+           +.+|.++|++++.+
T Consensus        78 ~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          78 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence            8999999988764           68888888888844

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=3.1e-07  Score=74.87  Aligned_cols=156  Identities=6%  Similarity=-0.081  Sum_probs=105.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCchHH----H---HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767           18 LAKELHNWREVADFYRKASELYNECGRSQPA----S---DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD   89 (233)
Q Consensus        18 ~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~----a---~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~   89 (233)
                      .....+..++|++++++++.+-   .+...+    .   ..+.+.+.++. .|++++|+.+++++++..+..      ..
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~~---P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~------~~  108 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------YG  108 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHhcccccHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc------HH
Confidence            3343444589999999998753   222211    1   11222233344 466888999999888765542      24


Q ss_pred             HHHHHHHHHHHhcc--HHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHH
Q 026767           90 LYRAATNVYIKLEK--YADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNR  167 (233)
Q Consensus        90 ~l~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~  167 (233)
                      ++..+|.++...++  +++|+..+++++.+     ++......+..+|.++...|.+.+|+..+++++.+..    ....
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p----~~~~  179 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF----SNYS  179 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC----CCHH
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhh-----CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC----CCHH
Confidence            67888888887764  89999999999976     2333333457889999999999999999999985532    2356


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          168 CATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       168 ~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ++..++.++ ..|+++.|....+..
T Consensus       180 a~~~l~~~~~~~~~~~~A~~~~~~~  204 (334)
T d1dcea1         180 SWHYRSCLLPQLHPQPDSGPQGRLP  204 (334)
T ss_dssp             HHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            777888877 677776655444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.26  E-value=1.6e-05  Score=56.10  Aligned_cols=108  Identities=16%  Similarity=0.158  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--
Q 026767           23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK--  100 (233)
Q Consensus        23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~--  100 (233)
                      .|+++|+.+|++|.+    .|++...    .+++.. ...++++|+.+|++|.+.    |+.    .+...+|.+|..  
T Consensus         7 kd~~~A~~~~~kaa~----~g~~~a~----~~l~~~-~~~~~~~a~~~~~~aa~~----g~~----~a~~~Lg~~y~~g~   69 (133)
T d1klxa_           7 KDLKKAIQYYVKACE----LNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL----NSG----NGCRFLGDFYENGK   69 (133)
T ss_dssp             HHHHHHHHHHHHHHH----TTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHCS
T ss_pred             cCHHHHHHHHHHHHH----CCChhhh----hhhccc-cccCHHHHHHHHhhhhcc----cch----hhhhhHHHhhhhcc
Confidence            378899999999975    4666433    334421 157899999999999853    432    467889999875  


Q ss_pred             --hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh----hCCHHHHHHHHHHhh
Q 026767          101 --LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY----ANDFKQAEKCYNDCS  155 (233)
Q Consensus       101 --~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~gd~~~A~~~~~~al  155 (233)
                        ..++.+|+.+|+++.+.    +    ...+.+.+|.+|..    ..|+.+|.+.|+++.
T Consensus        70 ~~~~d~~~A~~~~~~aa~~----g----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa  122 (133)
T d1klxa_          70 YVKKDLRKAAQYYSKACGL----N----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  122 (133)
T ss_dssp             SSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHhhhhcc----C----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence              45899999999999743    2    34567889999987    458999999999986

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=8.6e-05  Score=59.36  Aligned_cols=155  Identities=12%  Similarity=0.063  Sum_probs=107.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 026767           22 LHNWREVADFYRKASELYNECG--RSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVY   98 (233)
Q Consensus        22 ~g~~~eA~~~~~~A~~l~~~~g--~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~   98 (233)
                      .+....+...++++..+|.+.=  ........+...+.+.. .|++++|...|++++......     ...++..++.+.
T Consensus        70 ~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~-----~~~~w~~~~~~~  144 (308)
T d2onda1          70 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFA  144 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----THHHHHHHHHHH
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHH
Confidence            4444444444455555544321  12234457788888888 799999999999998653322     123677888999


Q ss_pred             HHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH-HHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-
Q 026767           99 IKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV-YLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-  176 (233)
Q Consensus        99 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~-~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-  176 (233)
                      .+.|++++|...|++++....      .....+...+.. +...|+.+.|...|++++....    ....+....++.. 
T Consensus       145 ~~~~~~~~ar~i~~~al~~~~------~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p----~~~~~w~~y~~~~~  214 (308)
T d2onda1         145 RRAEGIKSGRMIFKKAREDAR------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG----DIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHCHHHHHHHHHHHHTSTT------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHH
Confidence            999999999999999985422      223445555655 4456899999999999984321    1245666677766 


Q ss_pred             hcCCHHHHHHHHhhc
Q 026767          177 TEGDVEEIKRVAQSS  191 (233)
Q Consensus       177 ~~gd~~~a~~~~~~~  191 (233)
                      ..||.+.|+...+++
T Consensus       215 ~~g~~~~aR~~fe~a  229 (308)
T d2onda1         215 HLNEDNNTRVLFERV  229 (308)
T ss_dssp             TTCCHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHH
Confidence            789999999999998

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.08  E-value=8.5e-06  Score=64.66  Aligned_cols=117  Identities=10%  Similarity=-0.009  Sum_probs=68.9

Q ss_pred             hhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767           60 EDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL  139 (233)
Q Consensus        60 ~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~  139 (233)
                      ..|++++|+..|+++++..+..      ..++..++.+++..|++++|+..|++++.+.      +.....+..++.++.
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~------P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKD------ASLRSSFIELLCIDGDFERADEQLMQSIKLF------PEYLPGASQLRHLVK   75 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHH
Confidence            3688888888888888776653      2567788888888888888888888887652      223334555555554


Q ss_pred             hhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767          140 YANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS  191 (233)
Q Consensus       140 ~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~  191 (233)
                      ..+...++...+.+..   ..........+...+.++ ..||.++|.+.+.++
T Consensus        76 a~~~~~~a~~~~~~~~---~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a  125 (264)
T d1zbpa1          76 AAQARKDFAQGAATAK---VLGENEELTKSLVSFNLSMVSQDYEQVSELALQI  125 (264)
T ss_dssp             HHHHHHHHTTSCCCEE---CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hccccHHHHHHhhhhh---cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            4443333222111111   112233333333334444 678888888777665

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.07  E-value=3.1e-06  Score=67.26  Aligned_cols=119  Identities=10%  Similarity=0.004  Sum_probs=90.1

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767           21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI   99 (233)
Q Consensus        21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~   99 (233)
                      ..|++++|+..|+++++..      ..-+.++.++|.++. .|++++|+..|++++++.++.      ......++.++.
T Consensus         8 ~~G~l~eAl~~l~~al~~~------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~------~~~~~~l~~ll~   75 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY------LPGASQLRHLVK   75 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG------HHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHH
Confidence            4799999999999998873      356778999999999 899999999999999987743      245667777776


Q ss_pred             HhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767          100 KLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ  156 (233)
Q Consensus       100 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~  156 (233)
                      ..+...++...+.+...    .+ .+.....+...+.++...|++++|...++++..
T Consensus        76 a~~~~~~a~~~~~~~~~----~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          76 AAQARKDFAQGAATAKV----LG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             HHHHHHHHTTSCCCEEC----CC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHhhhhhc----cc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            66666655443332221    11 233445667889999999999999999999873

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=0.00076  Score=46.61  Aligned_cols=80  Identities=9%  Similarity=-0.009  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767           88 FDLYRAATNVYIKL---EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD  164 (233)
Q Consensus        88 ~~~l~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~  164 (233)
                      ..+.+++|+++++.   .+..+++.++++++..     ++.....+++.+|+.|..+|+|++|++++++++.+.-  ...
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP--~n~  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER--NNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC--CcH
Confidence            57899999999865   5667899999877642     2333446789999999999999999999999995532  224


Q ss_pred             HHHHHHHHHH
Q 026767          165 QNRCATKLIS  174 (233)
Q Consensus       165 e~~~l~~L~~  174 (233)
                      ++..|..+++
T Consensus       108 qA~~L~~~Ie  117 (124)
T d2pqrb1         108 QVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4555555543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.48  E-value=0.00057  Score=52.75  Aligned_cols=91  Identities=13%  Similarity=0.114  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhHccC
Q 026767           49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK----LEKYADAATFLLRWGLAADKCNA  123 (233)
Q Consensus        49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~  123 (233)
                      +.++.++|..+. ++++++|+++|++|.+.    |+.    .++.++|.+|..    ..++..|..+++.+...    + 
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g~~----~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----~-   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----KEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N-   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----c-
Confidence            357889999998 79999999999999754    443    578889999987    66999999999987742    1 


Q ss_pred             cchHHHhHHHHHHHHHh----hCCHHHHHHHHHHhh
Q 026767          124 TNSQCKAYLSAIIVYLY----ANDFKQAEKCYNDCS  155 (233)
Q Consensus       124 ~~~~a~~~~~lg~~~~~----~gd~~~A~~~~~~al  155 (233)
                         ...+...+|.++..    ..+...|...++++.
T Consensus        69 ---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~  101 (265)
T d1ouva_          69 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC  101 (265)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             ---ccchhhccccccccccccchhhHHHHHHHhhhh
Confidence               12334566666654    356777887777765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.32  E-value=0.00076  Score=46.95  Aligned_cols=80  Identities=16%  Similarity=0.100  Sum_probs=63.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 026767           22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-----AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATN   96 (233)
Q Consensus        22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-----g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~   96 (233)
                      ..++++|+.+|++|.+.    |+    ..+..++|.+|..     .++++|+++|++|.+.    |+    ..+..++|.
T Consensus        36 ~~~~~~a~~~~~~aa~~----g~----~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~----g~----~~a~~~Lg~   99 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND----QDGCLILGY   99 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHH
T ss_pred             ccCHHHHHHHHhhhhcc----cc----hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc----Cc----chHHHHHHH
Confidence            56789999999998753    54    3567889999884     4689999999999854    33    246788999


Q ss_pred             HHHH----hccHHHHHHHHHHHHHH
Q 026767           97 VYIK----LEKYADAATFLLRWGLA  117 (233)
Q Consensus        97 ~~~~----~g~~~~A~~~~~~al~~  117 (233)
                      +|..    ..++.+|+.+|++|.+.
T Consensus       100 ~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         100 KQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCccCCCHHHHHHHHHHHHHC
Confidence            9887    45899999999999853

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.014  Score=40.01  Aligned_cols=76  Identities=18%  Similarity=0.011  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhh----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767           49 SDALAKAARALE----DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT  124 (233)
Q Consensus        49 a~~l~~lg~~~~----~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  124 (233)
                      ..+-.+.|.++.    ..+..+++..+++.+...     +.....++..+|..|.++|+|++|..++++++++    ...
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-----p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----eP~  105 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----ERN  105 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc----CCC
Confidence            445555555544    266788999998876532     2223479999999999999999999999999976    334


Q ss_pred             chHHHhHHH
Q 026767          125 NSQCKAYLS  133 (233)
Q Consensus       125 ~~~a~~~~~  133 (233)
                      ..++..+..
T Consensus       106 n~qA~~L~~  114 (124)
T d2pqrb1         106 NKQVGALKS  114 (124)
T ss_dssp             CHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            445544433

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.47  E-value=0.063  Score=33.41  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=26.8

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767            3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNE   41 (233)
Q Consensus         3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~   41 (233)
                      .+|...|-.+..=+.-+...|+|+|||+|+++|+....+
T Consensus         2 ~sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           2 EGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            356666666666677777777777777777777776544

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.43  E-value=0.17  Score=31.32  Aligned_cols=33  Identities=9%  Similarity=-0.007  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767           87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAAD  119 (233)
Q Consensus        87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~  119 (233)
                      .+..+..-++-++..|+|++||+++++|.....
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            344455555566666666666666666655443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.20  E-value=0.78  Score=29.11  Aligned_cols=28  Identities=25%  Similarity=0.303  Sum_probs=14.1

Q ss_pred             HHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767           53 AKAARALE-DAVPEDAIQLYTDACIMLEE   80 (233)
Q Consensus        53 ~~lg~~~~-~g~~~~A~~~~~~Al~~~~~   80 (233)
                      .+-|.-+. .|+|++|+.+|.+|++++..
T Consensus        19 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          19 LKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            33333344 45555555555555555443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.67  E-value=3.9  Score=25.57  Aligned_cols=38  Identities=13%  Similarity=0.099  Sum_probs=32.0

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767            4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNE   41 (233)
Q Consensus         4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~   41 (233)
                      .....|..+.+-|.-+-..|+|++|+.+|.+|++++..
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            35677888888888889999999999999999988764