Citrus Sinensis ID: 026773

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHEEEEccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHEHHcHHHHHcccccHHHHHHHHHHHHHEEEEEEEccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHcccccccHEHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mtgtfgalsLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQhvlkptinpplysfhrslltskaplsvqthinslfstprghylqnraptftrrlfipsvsgiwdaltggnnnsREAVVAIRRGMLLFRQgdvvgsvaefdkaieldprqkisgkgayrFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDvaqnpndteESIWCFLCEAQLYGVDEARNRFLEAR
Flexible Loop (DISEMBL)
mtgtfgalslsqTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINslfstprghYLQNRAPTFTRRLFIPSVSGIWDaltggnnnsREAVVAIRRGMLLFRQGDVVGSVAEFdkaieldprqkisgkgayrFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR
Low Complexity Region (SEG)
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR
Disordered region (IsUnstruct)
******************TQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEA********
Disordered Region (DISOPRED)
****FGALSLSQTY***RTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKP***********************************************RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA*
Disordered Region (DISEMBL)
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR
Disordered Region (DISPRO)
****FGALSLS*TYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
224125100	271	predicted protein [Populus trichocarpa]	0.746	0.642	0.645	1e-56
356533558	255	PREDICTED: uncharacterized protein LOC10	0.660	0.603	0.574	2e-49
449454057	267	PREDICTED: uncharacterized protein LOC10	0.515	0.449	0.718	2e-48
124359146	263	TPR repeat [Medicago truncatula]	0.523	0.463	0.673	2e-46
357441797	265	hypothetical protein MTR_1g083600 [Medic	0.519	0.456	0.671	7e-46
225450751	270	PREDICTED: uncharacterized protein LOC10	0.592	0.511	0.612	3e-45
217073934	265	unknown [Medicago truncatula]	0.519	0.456	0.656	2e-44
388511867	257	unknown [Lotus japonicus]	0.545	0.494	0.66	7e-43
297829092	257	binding protein [Arabidopsis lyrata subs	0.690	0.626	0.534	8e-43
30679555	257	tetratricopeptide repeat-containing prot	0.690	0.626	0.529	5e-42

>gi|224125100|ref|XP_002319500.1| predicted protein [Populus trichocarpa] gi|222857876|gb|EEE95423.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 140/192 (72%), Gaps = 18/192 (9%)

Query: 44  MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINS-LFST---PRGHYLQNRAPTFT 99
           MALT +       P   S H+  LT+  P S +TH NS  FST    R H LQN  PTFT
Sbjct: 1   MALTHNFNHIFPTPSSSSKHKHSLTTTLPFSPKTHTNSHFFSTNIPSRIHNLQNPLPTFT 60

Query: 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159
           RRLF+PSVSGIWDALTGGNNN REAV+AIRRGMLLFRQGDV+GS+ EFDKAIELD RQK 
Sbjct: 61  RRLFLPSVSGIWDALTGGNNNPREAVMAIRRGMLLFRQGDVLGSLVEFDKAIELDTRQK- 119

Query: 160 SGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 219
               AY         + ++ + + + +RFEEGA+QFRIDVAQNPNDTEESIWCFLCEAQL
Sbjct: 120 ----AY---------LWQRGLSLYYVDRFEEGAQQFRIDVAQNPNDTEESIWCFLCEAQL 166

Query: 220 YGVDEARNRFLE 231
           YGVDEAR RFLE
Sbjct: 167 YGVDEARKRFLE 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533558|ref|XP_003535330.1| PREDICTED: uncharacterized protein LOC100809261 [Glycine max]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 131/195 (67%), Gaps = 41/195 (21%)

Query: 45  ALTQHVLKP---TINPPLYSFHRS----LLTSKAPLSVQTHINSLFSTPRGHYLQNRAPT 97
           A   H LKP    ++P L+  HRS     L+ KAP S    +                  
Sbjct: 3   AFISHNLKPGGIMVSPSLH--HRSSFPLQLSLKAPFSASHPL-----------------V 43

Query: 98  FTRRLFIPSVSGIWDALTGGNNN-SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
            TRRLF+PSVSGIWDALTGGNNN +REAV+AIRRGMLLFRQGDV GS+AEFDKAI+LDPR
Sbjct: 44  LTRRLFLPSVSGIWDALTGGNNNNAREAVLAIRRGMLLFRQGDVSGSLAEFDKAIQLDPR 103

Query: 157 QKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 216
           QK     AY         + ++ + + + NRFEE AEQFR+DVAQNPNDTEESIWCFLCE
Sbjct: 104 QK-----AY---------LWQRGLSLYYLNRFEEAAEQFRLDVAQNPNDTEESIWCFLCE 149

Query: 217 AQLYGVDEARNRFLE 231
           AQL+GVDEAR R+LE
Sbjct: 150 AQLFGVDEARKRYLE 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454057|ref|XP_004144772.1| PREDICTED: uncharacterized protein LOC101209381 [Cucumis sativus]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 111/135 (82%), Gaps = 15/135 (11%)

Query: 97  TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
           + +RRLF+PSVSGIWDALTGGNN  R+AV AIRRGMLLFRQGDV+GS+AEFDKAIELDPR
Sbjct: 55  SLSRRLFVPSVSGIWDALTGGNN-PRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPR 113

Query: 157 QKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 216
           QK     AY         + ++ + + + +RFEEGAEQFR+DVAQNPNDTEESIWCFLCE
Sbjct: 114 QK-----AY---------LWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCE 159

Query: 217 AQLYGVDEARNRFLE 231
           AQLYGVDEAR RFLE
Sbjct: 160 AQLYGVDEARRRFLE 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359146|gb|ABD28339.2| TPR repeat [Medicago truncatula]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/138 (67%), Positives = 111/138 (80%), Gaps = 16/138 (11%)

Query: 97  TFTRRLFIPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154
             +RRLF+PSVSGIWDA+TGG  NNN+ EA++AIRRGM LFRQG+V+GSV EFDKAI+LD
Sbjct: 50  NLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQLD 109

Query: 155 PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFL 214
           PRQK     AY         + ++ + + + +RFEEGAEQFR+DVAQNPNDTEESIWCFL
Sbjct: 110 PRQK-----AY---------LWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFL 155

Query: 215 CEAQLYGVDEARNRFLEA 232
           CEAQLYGVDEAR R+LEA
Sbjct: 156 CEAQLYGVDEARKRYLEA 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441797|ref|XP_003591176.1| hypothetical protein MTR_1g083600 [Medicago truncatula] gi|355480224|gb|AES61427.1| hypothetical protein MTR_1g083600 [Medicago truncatula] gi|388510044|gb|AFK43088.1| unknown [Medicago truncatula]

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 110/137 (80%), Gaps = 16/137 (11%)

Query: 97  TFTRRLFIPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154
             +RRLF+PSVSGIWDA+TGG  NNN+ EA++AIRRGM LFRQG+V+GSV EFDKAI+LD
Sbjct: 50  NLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQLD 109

Query: 155 PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFL 214
           PRQK     AY         + ++ + + + +RFEEGAEQFR+DVAQNPNDTEESIWCFL
Sbjct: 110 PRQK-----AY---------LWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFL 155

Query: 215 CEAQLYGVDEARNRFLE 231
           CEAQLYGVDEAR R+LE
Sbjct: 156 CEAQLYGVDEARKRYLE 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450751|ref|XP_002279298.1| PREDICTED: uncharacterized protein LOC100240883 [Vitis vinifera] gi|296089711|emb|CBI39530.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/160 (61%), Positives = 116/160 (72%), Gaps = 22/160 (13%)

Query: 79  INSLFSTP-------RGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRG 131
           I  L S+P       R H  Q    + +RRLF+PSVSGIW+ALTGG++  RE+ +AIRRG
Sbjct: 33  IKPLSSSPFFTTTASRIHSHQTPFHSLSRRLFLPSVSGIWNALTGGDSY-RESAMAIRRG 91

Query: 132 MLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEG 191
           MLLFRQGDV GS+ EFDKAIELDPRQK     AY         + ++ + + + +RFEEG
Sbjct: 92  MLLFRQGDVSGSLVEFDKAIELDPRQK-----AY---------LWQRGLSLYYLDRFEEG 137

Query: 192 AEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231
           AEQFR+DVAQNPNDTEESIWCFLCEAQLYG DEAR RFLE
Sbjct: 138 AEQFRLDVAQNPNDTEESIWCFLCEAQLYGADEARRRFLE 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073934|gb|ACJ85327.1| unknown [Medicago truncatula]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 108/137 (78%), Gaps = 16/137 (11%)

Query: 97  TFTRRLFIPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154
             +RRLF+PSVSGIWDA+TGG  NNN+ EA++A RRGM LFRQG+V+GSV EFDKAI+LD
Sbjct: 50  NLSRRLFLPSVSGIWDAITGGSGNNNTNEALLATRRGMSLFRQGEVLGSVVEFDKAIQLD 109

Query: 155 PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFL 214
           PRQK     AY         + ++ + + + +RFEEGAEQFR+DVAQNPNDTEESIWCFL
Sbjct: 110 PRQK-----AY---------LWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFL 155

Query: 215 CEAQLYGVDEARNRFLE 231
           CEAQLYGVD AR R+LE
Sbjct: 156 CEAQLYGVDGARKRYLE 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511867|gb|AFK43995.1| unknown [Lotus japonicus]

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 99/150 (66%), Positives = 115/150 (76%), Gaps = 23/150 (15%)

Query: 91  LQNRAPTF-------TRRLFIPSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVV 141
           L ++AP F       TRRLF+PSVS IWDA+TGGNNN+  REA++AIRRGM LFRQGDV 
Sbjct: 29  LPSKAPIFCSNPSILTRRLFLPSVSAIWDAVTGGNNNNNGREALLAIRRGMSLFRQGDVS 88

Query: 142 GSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201
           GSV EFDKAI+LDPRQK     AY         + ++ + + + NRFEEGAEQFR+DVAQ
Sbjct: 89  GSVVEFDKAIQLDPRQK-----AY---------LWQRGLSLYYLNRFEEGAEQFRLDVAQ 134

Query: 202 NPNDTEESIWCFLCEAQLYGVDEARNRFLE 231
           NPNDTEESIWCFLCEAQLYGVDEAR R+LE
Sbjct: 135 NPNDTEESIWCFLCEAQLYGVDEARKRYLE 164

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829092|ref|XP_002882428.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297328268|gb|EFH58687.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 127/189 (67%), Gaps = 28/189 (14%)

Query: 44  MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLF 103
           M+LTQ ++ P I P      R++      +S    +N  FS    H L       +RRLF
Sbjct: 1   MSLTQ-IVNPIIYP-----SRTIPRRFTAISPFQTLNPQFSRHPPHAL-------SRRLF 47

Query: 104 IPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGK 162
           +PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGDV GSVAEFD+AI LDPRQK    
Sbjct: 48  LPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAIVLDPRQK---- 103

Query: 163 GAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV 222
            AY         + ++ + + + +RFEEGAEQFRIDVAQNPNDTEESIWCF+CEA+L+GV
Sbjct: 104 -AY---------LWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGV 153

Query: 223 DEARNRFLE 231
           D AR +FLE
Sbjct: 154 DVARKQFLE 162

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679555|ref|NP_683531.2| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|27311659|gb|AAO00795.1| Unknown protein [Arabidopsis thaliana] gi|30023732|gb|AAP13399.1| At3g05625 [Arabidopsis thaliana] gi|332640747|gb|AEE74268.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/189 (52%), Positives = 127/189 (67%), Gaps = 28/189 (14%)

Query: 44  MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLF 103
           M+LTQ ++ P I P      R++      +S    ++  FS    H L       +RRLF
Sbjct: 1   MSLTQ-IVNPIIYP-----SRTIPRRFTAISPFKTLSPQFSRHPPHAL-------SRRLF 47

Query: 104 IPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGK 162
           +PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGDV GSVAEFD+AI LDPRQK    
Sbjct: 48  LPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAIILDPRQK---- 103

Query: 163 GAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV 222
            AY         + ++ + + + +RFEEGAEQFRIDVAQNPNDTEESIWCF+CEA+L+GV
Sbjct: 104 -AY---------LWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGV 153

Query: 223 DEARNRFLE 231
           D AR +FLE
Sbjct: 154 DVARTQFLE 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:504955885	257	AT3G05625 "AT3G05625" [Arabido	0.587	0.533	0.592	5.3e-40

TAIR|locus:504955885 AT3G05625 "AT3G05625" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 90/152 (59%), Positives = 112/152 (73%)

Query:    81 SLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGD 139
             S F T    + ++     +RRLF+PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGD
Sbjct:    25 SPFKTLSPQFSRHPPHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGD 84

Query:   140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199
             V GSVAEFD+AI LDPRQK     AY         + ++ + + + +RFEEGAEQFRIDV
Sbjct:    85 VAGSVAEFDRAIILDPRQK-----AY---------LWQRGLSLYYVDRFEEGAEQFRIDV 130

Query:   200 AQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231
             AQNPNDTEESIWCF+CEA+L+GVD AR +FLE
Sbjct:   131 AQNPNDTEESIWCFICEARLHGVDVARTQFLE 162


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       233   0.00086  113 3  11 22  0.49    32
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  176 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.76u 0.11s 20.87t   Elapsed:  00:00:01
  Total cpu time:  20.76u 0.11s 20.87t   Elapsed:  00:00:01
  Start:  Sat May 11 05:17:37 2013   End:  Sat May 11 05:17:38 2013

GO:0008150 "biological_process" evidence=ND

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130116 hypothetical protein (271 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-04

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
             A      G  LF+ GD   ++  ++KA+ELDP
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDP 34

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PRK15359	144	type III secretion system chaperone protein SscB;	99.64
PRK11189	296	lipoprotein NlpI; Provisional	99.62
PRK15359	144	type III secretion system chaperone protein SscB;	99.58
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.53
KOG0553	304	consensus TPR repeat-containing protein [General f	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.52
PRK11189	296	lipoprotein NlpI; Provisional	99.5
PRK12370	553	invasion protein regulator; Provisional	99.48
PRK12370	553	invasion protein regulator; Provisional	99.47
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.45
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.45
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.4
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.39
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.37
PLN02789	320	farnesyltranstransferase	99.36
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.34
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.32
KOG1126	638	consensus DNA-binding cell division cycle control	99.31
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.3
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.28
KOG1126	638	consensus DNA-binding cell division cycle control	99.27
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.26
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.26
KOG0553	304	consensus TPR repeat-containing protein [General f	99.26
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.26
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.24
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.23
KOG1125	579	consensus TPR repeat-containing protein [General f	99.23
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.21
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.21
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.2
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.2
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.19
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.16
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.16
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.15
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.15
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.13
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.13
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.12
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.12
PLN02789	320	farnesyltranstransferase	99.12
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.11
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.09
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.08
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.08
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.07
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.06
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.06
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.05
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.04
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.04
PF13371	73	TPR_9: Tetratricopeptide repeat	99.03
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.02
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.02
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.99
PF12688	120	TPR_5: Tetratrico peptide repeat	98.99
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.98
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.94
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.92
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.92
PRK15331	165	chaperone protein SicA; Provisional	98.92
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.91
KOG1125	579	consensus TPR repeat-containing protein [General f	98.88
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.87
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.85
PRK11906	458	transcriptional regulator; Provisional	98.84
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.83
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.83
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.81
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.8
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.8
KOG4555	175	consensus TPR repeat-containing protein [Function	98.78
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.77
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.75
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.74
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.73
PRK10803	263	tol-pal system protein YbgF; Provisional	98.73
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.71
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.7
PRK10803	263	tol-pal system protein YbgF; Provisional	98.7
PRK11906	458	transcriptional regulator; Provisional	98.69
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.69
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.68
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.68
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.67
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.66
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.64
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.61
PRK14574	822	hmsH outer membrane protein; Provisional	98.59
KOG2076	895	consensus RNA polymerase III transcription factor	98.57
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.5
KOG4234	271	consensus TPR repeat-containing protein [General f	98.5
PF13371	73	TPR_9: Tetratricopeptide repeat	98.46
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.46
KOG4555	175	consensus TPR repeat-containing protein [Function	98.45
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.41
PF13512	142	TPR_18: Tetratricopeptide repeat	98.4
PRK15331	165	chaperone protein SicA; Provisional	98.39
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.36
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.36
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.35
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.35
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.33
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.33
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.33
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.33
KOG4234	271	consensus TPR repeat-containing protein [General f	98.33
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.32
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.3
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.27
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.26
PRK14574	822	hmsH outer membrane protein; Provisional	98.24
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.23
KOG1129	478	consensus TPR repeat-containing protein [General f	98.19
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.18
PF13512	142	TPR_18: Tetratricopeptide repeat	98.18
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.17
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.12
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.12
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.11
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.07
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.05
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.05
KOG2076	895	consensus RNA polymerase III transcription factor	98.04
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.02
PF13431	34	TPR_17: Tetratricopeptide repeat	98.02
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.99
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.99
PF12688	120	TPR_5: Tetratrico peptide repeat	97.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.94
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.94
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.93
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.92
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.89
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.86
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.84
PF13428	44	TPR_14: Tetratricopeptide repeat	97.83
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.82
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.81
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.78
PF13428	44	TPR_14: Tetratricopeptide repeat	97.78
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.75
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.74
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.73
PF13431	34	TPR_17: Tetratricopeptide repeat	97.72
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.72
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.7
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.7
PRK10941	269	hypothetical protein; Provisional	97.69
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.68
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.64
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.62
KOG2003	840	consensus TPR repeat-containing protein [General f	97.6
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.59
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.56
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.56
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.56
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.55
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.54
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.53
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.46
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.44
KOG1129	478	consensus TPR repeat-containing protein [General f	97.42
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.41
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.39
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.38
PLN03218	1060	maturation of RBCL 1; Provisional	97.37
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.34
PLN03077	857	Protein ECB2; Provisional	97.31
PLN03218	1060	maturation of RBCL 1; Provisional	97.3
KOG2003	840	consensus TPR repeat-containing protein [General f	97.29
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.28
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.26
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.25
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.25
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.21
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.18
PLN03077	857	Protein ECB2; Provisional	97.17
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.16
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.13
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.13
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.06
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.0
PRK04841	903	transcriptional regulator MalT; Provisional	96.97
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.91
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.74
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.65
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.62
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.58
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.52
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.49
PRK04841	903	transcriptional regulator MalT; Provisional	96.41
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.35
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.34
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.28
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.25
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.23
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.16
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.15
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.11
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.05
COG2912	269	Uncharacterized conserved protein [Function unknow	95.89
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.82
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.75
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.74
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.68
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.58
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.54
KOG1310	758	consensus WD40 repeat protein [General function pr	95.53
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.52
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.47
KOG2471	696	consensus TPR repeat-containing protein [General f	95.34
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.24
PRK10941	269	hypothetical protein; Provisional	95.24
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.24
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.22
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.21
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.2
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.18
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.16
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.03
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.98
KOG1310	758	consensus WD40 repeat protein [General function pr	94.96
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.95
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.93
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.86
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.86
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.57
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.39
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.1
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.81
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.55
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.24
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.72
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.66
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.59
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.12
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.11
COG2912	269	Uncharacterized conserved protein [Function unknow	92.02
KOG3364	149	consensus Membrane protein involved in organellar	91.99
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.75
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.61
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.48
KOG1915	677	consensus Cell cycle control protein (crooked neck	91.44
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.36
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.32
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.17
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.13
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.01
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	90.85
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.76
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.54
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.21
KOG2471	696	consensus TPR repeat-containing protein [General f	89.86
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.83
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	88.66
KOG4507	886	consensus Uncharacterized conserved protein, conta	88.62
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	88.14
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.67
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	87.16
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.03
COG5191	435	Uncharacterized conserved protein, contains HAT (H	86.5
COG4941	415	Predicted RNA polymerase sigma factor containing a	86.39
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	85.73
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.17
KOG3783	546	consensus Uncharacterized conserved protein [Funct	84.98
KOG1941	518	consensus Acetylcholine receptor-associated protei	84.88
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.79
KOG4507	886	consensus Uncharacterized conserved protein, conta	83.93
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	83.2
COG5191	435	Uncharacterized conserved protein, contains HAT (H	82.89
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	82.59
KOG2610	491	consensus Uncharacterized conserved protein [Funct	82.54
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	82.43
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.37
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	82.33
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	82.16
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.15
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	81.94
KOG1586	288	consensus Protein required for fusion of vesicles	81.8
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	81.73
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	81.07
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.96
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	80.61
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	80.06

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.64  E-value=2.2e-15  Score=122.77  Aligned_cols=100  Identities=9%  Similarity=-0.060  Sum_probs=50.9

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +...+-..+|...|..++  .++|+++++|..+|.++..+|++++|+..|++|++++|+++     ..+++         
T Consensus        34 ~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~-----~a~~~---------   97 (144)
T PRK15359         34 SWQEGDYSRAVIDFSWLV--MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP-----EPVYQ---------   97 (144)
T ss_pred             HHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----HHHHH---------
Confidence            333333344445555554  55555555555555555555555555555555555555554     22222         


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHH
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCF  213 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~  213 (233)
                      +|.++..+|++++|++.|+++++++|++++.+..++
T Consensus        98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            555555555555555555555555555555444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.62  E-value=8.1e-15  Score=131.81  Aligned_cols=121  Identities=17%  Similarity=0.239  Sum_probs=104.7

Q ss_pred             chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773           94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG  173 (233)
Q Consensus        94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~  173 (233)
                      ....+.+.+....|...++.++  +++|+++.+|+.+|.++..+|++++|+++|++|++++|++.     ..++      
T Consensus        70 ~g~~~~~~g~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~-----~a~~------  136 (296)
T PRK11189         70 RGVLYDSLGLRALARNDFSQAL--ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-----YAYL------  136 (296)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH------
Confidence            3445566667778888999999  89999999999999999999999999999999999999988     3433      


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                         ++|.+++..|++++|+++|+++++++|+++...+|..++. ..++.++|...+.+
T Consensus       137 ---~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~-~~~~~~~A~~~l~~  190 (296)
T PRK11189        137 ---NRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAE-SKLDPKQAKENLKQ  190 (296)
T ss_pred             ---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-ccCCHHHHHHHHHH
Confidence               5999999999999999999999999999997667765544 45789999998854

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.58  E-value=2.4e-14  Score=116.62  Aligned_cols=106  Identities=13%  Similarity=0.142  Sum_probs=97.2

Q ss_pred             HHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC
Q 026773          108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR  187 (233)
Q Consensus       108 ~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr  187 (233)
                      +..++.++  +++|++   +..+|.++...|++++|++.|+++++++|+++     .++.         ++|.++..+|+
T Consensus        13 ~~~~~~al--~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~---------~lg~~~~~~g~   73 (144)
T PRK15359         13 EDILKQLL--SVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW-----RAHI---------ALAGTWMMLKE   73 (144)
T ss_pred             HHHHHHHH--HcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHH---------HHHHHHHHHhh
Confidence            56888888  888875   67899999999999999999999999999988     4443         59999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          188 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       188 yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++|++.|+++++++|++++.+..++.|+..+|++++|+..|.++
T Consensus        74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A  118 (144)
T PRK15359         74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTA  118 (144)
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.53  E-value=2.1e-13  Score=117.00  Aligned_cols=112  Identities=8%  Similarity=0.001  Sum_probs=99.5

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH-H
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV-S  183 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al-~  183 (233)
                      .++...+..++  +.+|+++++|..+|.++...|++++|+..|++|++++|+++     ..+.         +.|.++ +
T Consensus        56 ~~~i~~l~~~L--~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~-----~~~~---------~lA~aL~~  119 (198)
T PRK10370         56 EAQLQALQDKI--RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA-----ELYA---------ALATVLYY  119 (198)
T ss_pred             HHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHH
Confidence            34555666667  89999999999999999999999999999999999999998     4433         489986 6


Q ss_pred             HcCC--cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          184 HFNR--FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       184 ~lGr--yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ..|+  +++|.+.++++++++|++++.+..++.+..++|++++|+..+.++
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7788  599999999999999999999999999999999999999999875

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=3.9e-14  Score=129.71  Aligned_cols=112  Identities=13%  Similarity=0.171  Sum_probs=95.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+-+.....+|.+.|+++|  +++|+||.-|.+|+.+|.++|.|+.||+|+++||++||++.     ..|         
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI--~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys-----kay---------  152 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAI--ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS-----KAY---------  152 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHH--hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH-----HHH---------
Confidence            34555566678999999999  99999999999999999999999999999999999999877     333         


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVD  223 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~d  223 (233)
                      -.+|.+++.+|++++|++.|.++|+++|++....-.+..+.-+++..+
T Consensus       153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  153 GRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            359999999999999999999999999999965555555555555433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.52  E-value=2.3e-13  Score=106.14  Aligned_cols=107  Identities=17%  Similarity=0.202  Sum_probs=92.3

Q ss_pred             HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE  189 (233)
Q Consensus       110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye  189 (233)
                      .+..++  +++|+++.+...+|.+++..|++++|++.|+++++++|+++     ..+.         ++|.+++.+|+++
T Consensus         5 ~~~~~l--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~---------~la~~~~~~~~~~   68 (135)
T TIGR02552         5 TLKDLL--GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS-----RYWL---------GLAACCQMLKEYE   68 (135)
T ss_pred             hHHHHH--cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----HHHH---------HHHHHHHHHHHHH
Confidence            445566  78999999999999999999999999999999999999887     3433         4899999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++.|+++++++|++++.+.+++.|+...|++++|...+.++
T Consensus        69 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  111 (135)
T TIGR02552        69 EAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLA  111 (135)
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999998888899999999999998887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.50  E-value=3.5e-13  Score=121.22  Aligned_cols=112  Identities=14%  Similarity=0.090  Sum_probs=97.4

Q ss_pred             HHHHHHHHhc-ccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          107 VSGIWDALTG-GNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       107 a~~i~~~~i~-~~l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      +...+++++. ..++| +.+..|+.+|.++...|++++|+.+|++|++++|+++     ..+.         ++|.++..
T Consensus        45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~-----~a~~---------~lg~~~~~  110 (296)
T PRK11189         45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA-----DAYN---------YLGIYLTQ  110 (296)
T ss_pred             HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-----HHHH---------HHHHHHHH
Confidence            4456666662 13455 4489999999999999999999999999999999998     3433         59999999


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++++|+++|+++++++|++...+.+++.++...|++++|...|.++
T Consensus       111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a  158 (296)
T PRK11189        111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAF  158 (296)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988764

>PRK12370 invasion protein regulator; Provisional

Probab=99.48  E-value=4.2e-13  Score=130.25  Aligned_cols=110  Identities=12%  Similarity=0.011  Sum_probs=56.7

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      .+|...+.+++  +++|+++.+|..+|.++..+|++++|++.|++|++++|+++     ..++         .+|.++..
T Consensus       321 ~~A~~~~~~Al--~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~-----~a~~---------~lg~~l~~  384 (553)
T PRK12370        321 IKAKEHAIKAT--ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA-----DIKY---------YYGWNLFM  384 (553)
T ss_pred             HHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHH
Confidence            34444555555  55555555555555555555555555555555555555555     2222         24555555


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                      +|++++|++.++++++++|.++....+...+....|++++|...+.
T Consensus       385 ~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        385 AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            5555555555555555555544433333333334455555544443

>PRK12370 invasion protein regulator; Provisional

Probab=99.47  E-value=8.4e-13  Score=128.18  Aligned_cols=118  Identities=15%  Similarity=0.033  Sum_probs=103.8

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      ...+-.++|...+++++  +++|+++.+|+.+|.++..+|++++|++.+++|++++|.++     ...+.         +
T Consensus       349 ~~~g~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-----~~~~~---------~  412 (553)
T PRK12370        349 TIHSEYIVGSLLFKQAN--LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-----AAGIT---------K  412 (553)
T ss_pred             HHccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----hhHHH---------H
Confidence            33445677888888888  99999999999999999999999999999999999999987     33333         6


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQN-PNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~ln-P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +.+++..|++++|++.++++++.+ |+++..+.+.+.++..+|+.++|+..+.++
T Consensus       413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            778999999999999999999885 788888888999999999999999998764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.47  E-value=4.9e-13  Score=124.00  Aligned_cols=105  Identities=15%  Similarity=0.214  Sum_probs=95.1

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      +.+-...|...|++++  +++|+++.+|.+||.++..+|++++|+.++++||+++|+++     ..++         ++|
T Consensus        14 ~~~~~~~Ai~~~~~Al--~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~-----~a~~---------~lg   77 (356)
T PLN03088         14 VDDDFALAVDLYTQAI--DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA-----KAYL---------RKG   77 (356)
T ss_pred             HcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH-----HHHH---------HHH
Confidence            3345567889999999  99999999999999999999999999999999999999988     4444         499


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY  220 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg  220 (233)
                      .+++.+|+|++|+..|+++++++|++++...|...|..++.
T Consensus        78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877663

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.46  E-value=1e-12  Score=128.12  Aligned_cols=109  Identities=17%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN  186 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG  186 (233)
                      |...+++++  +++|+++++|+.+|.+++.+|++++|+.+|++|++++|++.     ..         +.++|.+++.+|
T Consensus       384 A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~-----~~---------~~~la~~~~~~g  447 (615)
T TIGR00990       384 AEEDFDKAL--KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI-----FS---------HIQLGVTQYKEG  447 (615)
T ss_pred             HHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH-----HH---------HHHHHHHHHHCC
Confidence            444444444  45555555555555555555555555555555555555544     12         124666666666


Q ss_pred             CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ++++|+..|+++++.+|++++.+.+.+.++..+|++++|+..|.+
T Consensus       448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~  492 (615)
T TIGR00990       448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT  492 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.45  E-value=1.7e-13  Score=96.54  Aligned_cols=68  Identities=28%  Similarity=0.457  Sum_probs=63.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC-CcHHHHHHHHHHHH
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN-RFEEGAEQFRIDVA  200 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG-ryeeAi~~f~kAL~  200 (233)
                      .+|.+|..+|.+++..|+|++|+..|++||++||+++     ..++         ++|.++..+| ++++|+++|+++++
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~-----~~~~---------~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA-----EAYY---------NLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH-----HHHH---------HHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHH---------HHHHHHHHhCccHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999988     3433         5999999999 79999999999999


Q ss_pred             cCC
Q 026773          201 QNP  203 (233)
Q Consensus       201 lnP  203 (233)
                      +||
T Consensus        67 l~P   69 (69)
T PF13414_consen   67 LDP   69 (69)
T ss_dssp             HST
T ss_pred             cCc
Confidence            998

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.45  E-value=1.5e-12  Score=126.93  Aligned_cols=113  Identities=12%  Similarity=0.130  Sum_probs=94.5

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~  183 (233)
                      ..+|...++.++  +++|+++.+|..+|.++..+|++++|+..|++|++++|+++     ..++         .+|.+++
T Consensus       347 ~~eA~~~~~kal--~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-----~~~~---------~lg~~~~  410 (615)
T TIGR00990       347 HLEALADLSKSI--ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP-----DIYY---------HRAQLHF  410 (615)
T ss_pred             HHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHH
Confidence            345666666666  77888888888888888888888888888888888888877     3333         5999999


Q ss_pred             HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+|++++|+++|+++++++|++...+..++.++.++|++++|...|.++
T Consensus       411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  459 (615)
T TIGR00990       411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC  459 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999988888888888999999999988764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.40  E-value=2.6e-12  Score=108.44  Aligned_cols=101  Identities=12%  Similarity=0.071  Sum_probs=93.5

Q ss_pred             cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          118 NNN-SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       118 ~l~-P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      .++ ++.-+..+.+|..++..|++++|...|+-...+||.++     .+++         ++|.++..+|+|++|++.|.
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~-----~y~~---------gLG~~~Q~~g~~~~AI~aY~   93 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF-----DYWF---------RLGECCQAQKHWGEAIYAYG   93 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHH---------HHHHHHHHHhhHHHHHHHHH
Confidence            577 88889999999999999999999999999999999998     5655         49999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          197 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       197 kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|+.++|+||+++.+.+.|+..+|+.++|+..|..|
T Consensus        94 ~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363         94 RAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAV  129 (157)
T ss_pred             HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999865

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.39  E-value=4.9e-12  Score=127.28  Aligned_cols=121  Identities=10%  Similarity=-0.019  Sum_probs=111.7

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ....+.+..++++..|..++  +++|++..|+.+++.++.+++++++|+..++++++.+|+++     ....        
T Consensus        94 ~i~~~~g~~~ea~~~l~~~~--~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~-----~~~~--------  158 (694)
T PRK15179         94 RALEAAHRSDEGLAVWRGIH--QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA-----REIL--------  158 (694)
T ss_pred             HHHHHcCCcHHHHHHHHHHH--hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH-----HHHH--------
Confidence            34455667888999999999  99999999999999999999999999999999999999998     4544        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       .+|.++..+|+|++|++.|+++++.+|++++.+++++.++...|+.++|...|.++
T Consensus       159 -~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        159 -LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             -HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             49999999999999999999999999999999999999999999999999999875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.37  E-value=2.9e-12  Score=127.06  Aligned_cols=119  Identities=10%  Similarity=0.025  Sum_probs=68.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      .+++..+-..+++.+|++++  .++|+++++.+++|.++..+|+.++|+..|.+|++..|+.+     +.         .
T Consensus       328 nALkd~G~V~ea~~cYnkaL--~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a-----aa---------~  391 (966)
T KOG4626|consen  328 NALKDKGSVTEAVDCYNKAL--RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA-----AA---------H  391 (966)
T ss_pred             HHHHhccchHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh-----hh---------h
Confidence            44555554555666666666  66666666666666666666666666666666666666665     23         2


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                      +|+|.+|...|++++|+.+|..||+++|+.++++-++|..+..+|+.++|...+.
T Consensus       392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~  446 (966)
T KOG4626|consen  392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT  446 (966)
T ss_pred             hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence            3455555555555555555555555555555555555555555555555554443

>PLN02789 farnesyltranstransferase

Probab=99.36  E-value=8.2e-12  Score=115.14  Aligned_cols=150  Identities=10%  Similarity=0.019  Sum_probs=104.0

Q ss_pred             hhhccCCcchhhccccccccccccccccchhHH----HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC-CH
Q 026773           66 LLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTF----TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG-DV  140 (233)
Q Consensus        66 ~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~----~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG-dy  140 (233)
                      -.-.+.|+.+....+|+........+.++...+    ......+.|..+++++|  +++|++..+|..||.++..+| ++
T Consensus        11 ~~~d~~p~~~~~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI--~lnP~~ytaW~~R~~iL~~L~~~l   88 (320)
T PLN02789         11 EWADVTPIPQDDGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVI--RLNPGNYTVWHFRRLCLEALDADL   88 (320)
T ss_pred             CcCCccccCCCCCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHHcchhH
Confidence            345678888888778877766555555444322    22336678888899888  899999999999999999998 68


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCc--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773          141 VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRF--EEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  218 (233)
Q Consensus       141 eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGry--eeAi~~f~kAL~lnP~d~e~~~~~~l~~a~  218 (233)
                      ++|++.++++|+.+|++.     .. |.        .||.++..+|+.  +++++.+++++++||+|..+|..++.+...
T Consensus        89 ~eeL~~~~~~i~~npkny-----qa-W~--------~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~  154 (320)
T PLN02789         89 EEELDFAEDVAEDNPKNY-----QI-WH--------HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT  154 (320)
T ss_pred             HHHHHHHHHHHHHCCcch-----HH-hH--------HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            999999999999999987     33 33        366666666553  455666666666666666655555555556


Q ss_pred             cCCHHHHHHHHHh
Q 026773          219 LYGVDEARNRFLE  231 (233)
Q Consensus       219 Lg~~dEA~~~~l~  231 (233)
                      +|++++|++.+.+
T Consensus       155 l~~~~eeL~~~~~  167 (320)
T PLN02789        155 LGGWEDELEYCHQ  167 (320)
T ss_pred             hhhHHHHHHHHHH
Confidence            6666666555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.34  E-value=4.3e-11  Score=96.56  Aligned_cols=130  Identities=8%  Similarity=0.046  Sum_probs=99.2

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------  169 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------  169 (233)
                      ..+.+.+-...+...+..++  +.+|+++.++..+|.++..+|++++|++.|+++++++|++.     ..++..      
T Consensus        39 ~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~  111 (234)
T TIGR02521        39 LGYLEQGDLEVAKENLDKAL--EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG-----DVLNNYGTFLCQ  111 (234)
T ss_pred             HHHHHCCCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHH
Confidence            34444555566777777777  77888888888888888888888888888888888888765     222110      


Q ss_pred             ---------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773          170 ---------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR  228 (233)
Q Consensus       170 ---------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~  228 (233)
                                           ....++.++|.++...|++++|++.|+++++.+|++++.+...+.+....|++++|...
T Consensus       112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  191 (234)
T TIGR02521       112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY  191 (234)
T ss_pred             cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence                                 01235667888899999999999999999999998888777778888888999999888


Q ss_pred             HHhh
Q 026773          229 FLEA  232 (233)
Q Consensus       229 ~l~~  232 (233)
                      +.++
T Consensus       192 ~~~~  195 (234)
T TIGR02521       192 LERY  195 (234)
T ss_pred             HHHH
Confidence            7764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.34  E-value=1.3e-11  Score=128.25  Aligned_cols=114  Identities=12%  Similarity=0.050  Sum_probs=104.9

Q ss_pred             cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR  181 (233)
Q Consensus       102 ~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a  181 (233)
                      +-.++|...+.+++  +++|+ +.+|.++|.++.++|++++|++.|++|++++|+++     ..+.         ++|.+
T Consensus       590 Gr~~eAl~~~~~AL--~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-----~a~~---------nLG~a  652 (987)
T PRK09782        590 GQPELALNDLTRSL--NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-----NYQA---------ALGYA  652 (987)
T ss_pred             CCHHHHHHHHHHHH--HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHH
Confidence            56677888888888  89996 99999999999999999999999999999999998     4433         59999


Q ss_pred             HHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          182 VSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       182 l~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +...|++++|++.|+++++++|++++.+.+++.++..+|++++|...+.++
T Consensus       653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.32  E-value=2.5e-11  Score=94.59  Aligned_cols=102  Identities=9%  Similarity=0.010  Sum_probs=87.8

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +.+.+-..+|...+..++  +++|+++.+|..+|.++..+|++++|+..++++++++|+++     ..++.         
T Consensus        27 ~~~~~~~~~A~~~~~~~~--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~---------   90 (135)
T TIGR02552        27 LYQQGRYDEALKLFQLLA--AYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP-----RPYFH---------   90 (135)
T ss_pred             HHHcccHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh-----HHHHH---------
Confidence            334444567888999988  88999999999999999999999999999999999999988     44444         


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC  215 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~  215 (233)
                      +|.++...|++++|++.|+++++++|++.+...+...|
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  128 (135)
T TIGR02552        91 AAECLLALGEPESALKALDLAIEICGENPEYSELKERA  128 (135)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            99999999999999999999999999998755444333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=7.5e-12  Score=123.76  Aligned_cols=165  Identities=14%  Similarity=0.104  Sum_probs=132.8

Q ss_pred             HhhhhhccCCCCCc--------hhhhHHhhhhccCCcchhhcccccccc---ccccccccchhHHHhccCcchHHHHHHH
Q 026773           45 ALTQHVLKPTINPP--------LYSFHRSLLTSKAPLSVQTHINSLFST---PRGHYLQNRAPTFTRRLFIPSVSGIWDA  113 (233)
Q Consensus        45 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~n~~~~~---~~~h~~~~~~~~~~r~~~~~~a~~i~~~  113 (233)
                      +|.|-.++-.-|-|        .||.-|--=+++--+-+++.+||.|+=   +.+|.+       .-..-.+.|...|..
T Consensus       408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~-------~~~ee~d~a~~~fr~  480 (638)
T KOG1126|consen  408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHES-------IATEEFDKAMKSFRK  480 (638)
T ss_pred             HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChh-------hhhHHHHhHHHHHHh
Confidence            34455554444444        466655555555667777888887763   555532       222234567888888


Q ss_pred             HhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHH
Q 026773          114 LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAE  193 (233)
Q Consensus       114 ~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~  193 (233)
                      ++  ..+|++..||+.+|++|.++++++.|.-.|.||+++||.+.     ...-.         .|.++.++|+.++|+.
T Consensus       481 Al--~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns-----vi~~~---------~g~~~~~~k~~d~AL~  544 (638)
T KOG1126|consen  481 AL--GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS-----VILCH---------IGRIQHQLKRKDKALQ  544 (638)
T ss_pred             hh--cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch-----hHHhh---------hhHHHHHhhhhhHHHH
Confidence            88  89999999999999999999999999999999999999998     33333         8999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .|++|+.+||.|+-.-+.++..+..+++++||...++++
T Consensus       545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL  583 (638)
T KOG1126|consen  545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL  583 (638)
T ss_pred             HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence            999999999999999899999999999999999999885

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=7.3e-12  Score=121.35  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=81.4

Q ss_pred             HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE  189 (233)
Q Consensus       110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye  189 (233)
                      .++.+.  .+||+|+++|++||.+++.+++|++|++||+||++|||++..     .+-         .++.++|+.++++
T Consensus       382 ~F~~A~--~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~-----~~i---------Ql~~a~Yr~~k~~  445 (606)
T KOG0547|consen  382 DFNKAE--DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY-----AYI---------QLCCALYRQHKIA  445 (606)
T ss_pred             HHHHHH--hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH-----HHH---------HHHHHHHHHHHHH
Confidence            344444  788888888888888888888888888888888888888772     222         4788888888888


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +++.-|+.+++.=|+-+|.+..-+-++.-+++++.|...|..
T Consensus       446 ~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~  487 (606)
T KOG0547|consen  446 ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK  487 (606)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence            888888888888888888777776777777788888877754

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.30  E-value=1e-10  Score=94.27  Aligned_cols=118  Identities=9%  Similarity=0.031  Sum_probs=93.2

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      ..+-..++...+..++.....|..+.++..+|.++...|++++|++.|+++++.+|+++     ..++         .+|
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~---------~la  176 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP-----ESLL---------ELA  176 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh-----HHHH---------HHH
Confidence            33445566677777763223466778888889999999999999999999999988876     3333         499


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .+++..|++++|++.+++++++.|++++.+.....+....|+.++|+.....
T Consensus       177 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  228 (234)
T TIGR02521       177 ELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ  228 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999999999998887766566677788999999887554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.28  E-value=6.4e-11  Score=117.74  Aligned_cols=109  Identities=12%  Similarity=0.118  Sum_probs=59.5

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN  186 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG  186 (233)
                      |...+..++  +++|+++.++..+|.++..+|++++|+..++++++++|+++     ....         ++|.++...|
T Consensus       269 A~~~~~~Al--~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~-----~a~~---------~La~~l~~~G  332 (656)
T PRK15174        269 AAEHWRHAL--QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP-----YVRA---------MYARALRQVG  332 (656)
T ss_pred             HHHHHHHHH--hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHHCC
Confidence            444555555  55555555555555555555555555555555555555554     2211         3566666666


Q ss_pred             CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ++++|++.|+++++.+|+++......+.++..+|+.++|...|.+
T Consensus       333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~  377 (656)
T PRK15174        333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH  377 (656)
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666666666666666665554333344555556666666655544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=1.3e-11  Score=122.10  Aligned_cols=111  Identities=20%  Similarity=0.120  Sum_probs=98.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------------------------hhhh
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------------------------SIVG  173 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------------------------~~~~  173 (233)
                      .-+|+.|++|...|+++..|+|++.||+.|+|||++||++..    +|....                        +=++
T Consensus       415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY----ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn  490 (638)
T KOG1126|consen  415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY----AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN  490 (638)
T ss_pred             hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch----hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence            789999999999999999999999999999999999999883    222110                        2289


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ||+.+|.+|.+++++|.|.-.|.+|+++||.+....-..+..+.++|+.|+|++.+.++
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A  549 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA  549 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999876666777888999999999999875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.26  E-value=5.3e-11  Score=80.96  Aligned_cols=93  Identities=20%  Similarity=0.327  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      +++.+|.++...|++++|+..++++++++|++.     ..+.         .+|.++...|++++|++.|++++++.|.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA-----DAYY---------NLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH-----HHHH---------HHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            578899999999999999999999999999876     2333         48999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          206 TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       206 ~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+.+...+.+....|++++|...+.++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          68 AKAYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            877777778888889999998888764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.26  E-value=3.2e-11  Score=119.83  Aligned_cols=110  Identities=15%  Similarity=0.043  Sum_probs=72.5

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN  186 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG  186 (233)
                      |...|.+++  +++|+.++||.++|+++-..|+..||+++|++|++++|+++              ++.+|+|.++.++|
T Consensus       305 AI~~Ykral--~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha--------------dam~NLgni~~E~~  368 (966)
T KOG4626|consen  305 AIDTYKRAL--ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA--------------DAMNNLGNIYREQG  368 (966)
T ss_pred             HHHHHHHHH--hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH--------------HHHHHHHHHHHHhc
Confidence            344444444  55555555555555555555555555555555555555555              23445777888888


Q ss_pred             CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+++|...|.++++..|+.+++.-+++..+-++|++++|+..+.++
T Consensus       369 ~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea  414 (966)
T KOG4626|consen  369 KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA  414 (966)
T ss_pred             cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence            8888888888888888777777777777777777788877777664

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=3.3e-11  Score=110.64  Aligned_cols=95  Identities=21%  Similarity=0.298  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      ++-.-.-|.-+...++|++||..|++||+++|+++     -| +.        ||+.+|..+|.|+.||+|.+.||++||
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-----Vy-yc--------NRAAAy~~Lg~~~~AVkDce~Al~iDp  146 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-----VY-YC--------NRAAAYSKLGEYEDAVKDCESALSIDP  146 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-----hH-HH--------HHHHHHHHhcchHHHHHHHHHHHhcCh
Confidence            67788999999999999999999999999999999     34 44        699999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 NDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ....+|.-+++++..+|++++|.+.|.++
T Consensus       147 ~yskay~RLG~A~~~~gk~~~A~~aykKa  175 (304)
T KOG0553|consen  147 HYSKAYGRLGLAYLALGKYEEAIEAYKKA  175 (304)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHHHHhh
Confidence            99998888899999999999999998764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=2.6e-11  Score=117.61  Aligned_cols=111  Identities=17%  Similarity=0.200  Sum_probs=103.1

Q ss_pred             hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF  185 (233)
Q Consensus       106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l  185 (233)
                      .+-..++++|  +++|.+...|+.||.++....+-++...+|++|..+||+++     ..+++         ||.+++-+
T Consensus       344 ~a~~d~~~~I--~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-----dvYyH---------RgQm~flL  407 (606)
T KOG0547|consen  344 GAQEDFDAAI--KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-----DVYYH---------RGQMRFLL  407 (606)
T ss_pred             hhhhhHHHHH--hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-----chhHh---------HHHHHHHH
Confidence            4567888899  99999999999999999999999999999999999999999     56666         99999999


Q ss_pred             CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          186 NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       186 GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|++|+++|+++++++|++.-+++....++.++++++++...|.++
T Consensus       408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~  454 (606)
T KOG0547|consen  408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA  454 (606)
T ss_pred             HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888999999999999875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.25  E-value=1.3e-10  Score=115.61  Aligned_cols=121  Identities=9%  Similarity=0.034  Sum_probs=109.1

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCCCCccchhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVG----SVAEFDKAIELDPRQKISGKGAYRFTISI  171 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyee----AIadfdkAIeLdP~~~~~~~~~y~~~~~~  171 (233)
                      ..+.+.+-..+|...++.++  +++|+++.++..+|.++..+|++++    |++.|++|++++|+++     ..+.    
T Consensus       220 ~~l~~~g~~~eA~~~~~~al--~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~-----~a~~----  288 (656)
T PRK15174        220 DTLCAVGKYQEAIQTGESAL--ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV-----RIVT----  288 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH-----HHHH----
Confidence            44556666678999999999  8999999999999999999999996    8999999999999987     3433    


Q ss_pred             hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                           ++|.++...|++++|+..++++++++|++++.+.+++.++.++|++++|...+.++
T Consensus       289 -----~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        289 -----LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             -----HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                 59999999999999999999999999999999899999999999999999988764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.24  E-value=1.6e-10  Score=110.50  Aligned_cols=129  Identities=12%  Similarity=0.063  Sum_probs=91.1

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-------
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-------  169 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-------  169 (233)
                      .+.+.+-..++...+..++  +.+|+++.+++.+|.++..+|++++|++.|+++++.+|+++     ..+...       
T Consensus       745 ~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~  817 (899)
T TIGR02917       745 ALLASGNTAEAVKTLEAWL--KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA-----VVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhc
Confidence            3444444555556666655  55666666666666666666666666666666666666554     111100       


Q ss_pred             -----------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          170 -----------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       170 -----------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                                       ....++..+|.++...|++++|++.|+++++++|++++.+...+.++.+.|+.++|+..+.++
T Consensus       818 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  897 (899)
T TIGR02917       818 KDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL  897 (899)
T ss_pred             CcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                             002234468999999999999999999999999999998888999999999999999999876

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.23  E-value=8e-11  Score=109.29  Aligned_cols=92  Identities=14%  Similarity=0.147  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~  206 (233)
                      +...|...+..|+|++|++.|++||+++|+++     .++.         ++|.++..+|++++|+.+++++++++|+++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~-----~a~~---------~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~   70 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA-----ELYA---------DRAQANIKLGNFTEAVADANKAIELDPSLA   70 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence            56789999999999999999999999999988     4433         599999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          207 EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       207 e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ..++.++.++..+|++++|...|.++
T Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a   96 (356)
T PLN03088         71 KAYLRKGTACMKLEEYQTAKAALEKG   96 (356)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999998764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.23  E-value=1.6e-11  Score=120.10  Aligned_cols=112  Identities=17%  Similarity=0.179  Sum_probs=102.2

Q ss_pred             chHHHHHHHHhcccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          105 PSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P--~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      .....+|-++.  ..+|  .+++++..+|.++...|+|++||.+|+.||+.+|++.      ..|+        .+|.++
T Consensus       411 ~~i~~~fLeaa--~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~------~lWN--------RLGAtL  474 (579)
T KOG1125|consen  411 AHIQELFLEAA--RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY------LLWN--------RLGATL  474 (579)
T ss_pred             HHHHHHHHHHH--HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH------HHHH--------HhhHHh
Confidence            34556666665  5677  8999999999999999999999999999999999998      5565        799999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ..-.+.+|||+.|++|+++.|+.....++++.+...+|.++||...|++|
T Consensus       475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999986

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.21  E-value=3.5e-10  Score=93.58  Aligned_cols=108  Identities=17%  Similarity=0.183  Sum_probs=86.8

Q ss_pred             CcchHHHHHHHHh----cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773          103 FIPSVSGIWDALT----GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus       103 ~~~~a~~i~~~~i----~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      ++...-.+|..++    .+..+|..+.+++.+|.++...|++++|+..|++|++++|+..     ..      ..++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~------~~~~~~l   78 (172)
T PRK02603         10 FIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-----DR------SYILYNM   78 (172)
T ss_pred             hHhHHHHHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-----hH------HHHHHHH
Confidence            3444444454443    2345668889999999999999999999999999999988754     11      1134579


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG  221 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~  221 (233)
                      |.++..+|++++|++.++++++++|+++..+...+.++..+|+
T Consensus        79 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  121 (172)
T PRK02603         79 GIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE  121 (172)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999988888888887776

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.21  E-value=2.5e-10  Score=119.55  Aligned_cols=129  Identities=13%  Similarity=0.076  Sum_probs=105.9

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh----hhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI----SIVG  173 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~----~~~~  173 (233)
                      +.+.+-..+|...+.+++  +++|++++++..+|.++.++|++++|++.|++|++++|++..    ...|..    .-..
T Consensus       279 ~~~~g~~~~A~~~l~~aL--~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~----~~~~~~ll~~~~~~  352 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAV--RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN----RDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc----hhHHHHHHHhhhHH
Confidence            334455678889999999  899999999999999999999999999999999999998762    111210    0011


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ....+|.++...|++++|++.|+++++++|++++.+..++.++..+|++++|+..|.++
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a  411 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQA  411 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            23457888999999999999999999999999988888888888999999999988764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.20  E-value=3.3e-11  Score=84.21  Aligned_cols=65  Identities=18%  Similarity=0.342  Sum_probs=57.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773          128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~  206 (233)
                      +.+|.+++..|++++|++.|+++++.+|+++     ..++         .+|.+++.+|++++|++.|+++++++|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----~a~~---------~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNP-----EAWY---------LLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH-----HHHH---------HHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4689999999999999999999999999988     4444         499999999999999999999999999986

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.20  E-value=1.7e-10  Score=97.47  Aligned_cols=96  Identities=8%  Similarity=-0.014  Sum_probs=84.5

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+-..+-..+|+.+|..++  .+||.+++.|+++|.++-.+|+|++||+.|.+|+.++|+++     ..+++        
T Consensus        44 ~ly~~G~l~~A~~~f~~L~--~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp-----~~~~~--------  108 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLT--IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP-----QAPWA--------  108 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----hHHHH--------
Confidence            3444556678999999998  89999999999999999999999999999999999999999     44444        


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                       .|.++..+|+.++|.+.|+.+++.--.+++.
T Consensus       109 -ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~  139 (157)
T PRK15363        109 -AAECYLACDNVCYAIKALKAVVRICGEVSEH  139 (157)
T ss_pred             -HHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence             8999999999999999999999987555543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.19  E-value=5e-10  Score=84.00  Aligned_cols=97  Identities=11%  Similarity=0.147  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      +++++.+|..+..+|++++|++.|+++++.+|+++.     .      ..+.+.+|.+++..|++++|++.|++++..+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-----A------PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-----c------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            456667777777777777777777777777665531     0      01223467777777777777777777777666


Q ss_pred             CC---HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          204 ND---TEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       204 ~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ++   ++.+...+.++.++|+.++|...+.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  101 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQ  101 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            64   33445555666666777777666654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.16  E-value=6.9e-10  Score=106.20  Aligned_cols=116  Identities=12%  Similarity=0.043  Sum_probs=84.3

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      +.+-...|...+..++  +.+|+++.++..+|.++...|++++|++.++++++.+|++.     ..+.         .+|
T Consensus       137 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~~  200 (899)
T TIGR02917       137 GLGQLELAQKSYEQAL--AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV-----DALL---------LKG  200 (899)
T ss_pred             HcCCHHHHHHHHHHHH--hcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-----HHHH---------HHH
Confidence            3344456777777777  77788888888888888888888888888888888887766     3333         367


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .++...|++++|++.|+++++++|+++..+...+.++...|++++|...+.+
T Consensus       201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  252 (899)
T TIGR02917       201 DLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADA  252 (899)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7777777777777777777777777777666666677777777777766654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.16  E-value=6.1e-10  Score=116.66  Aligned_cols=126  Identities=10%  Similarity=0.090  Sum_probs=105.8

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-h--------
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-S--------  170 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-~--------  170 (233)
                      +.+-..+|...+.+++  +++|+++.++..+|.++..+|++++|++.|++|++++|++.     ..+... .        
T Consensus       363 ~~g~~~eA~~~~~~Al--~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-----~a~~~L~~l~~~~~~~  435 (1157)
T PRK11447        363 KANNLAQAERLYQQAR--QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-----NAVRGLANLYRQQSPE  435 (1157)
T ss_pred             HCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCHH
Confidence            4445566777888888  89999999999999999999999999999999999999987     222110 0        


Q ss_pred             ------------------------hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773          171 ------------------------IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  226 (233)
Q Consensus       171 ------------------------~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~  226 (233)
                                              ..+++..+|.++...|++++|++.|+++++++|++++.++.++.++.++|++++|.
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                                    02345567888899999999999999999999999998888889999999999999


Q ss_pred             HHHHhh
Q 026773          227 NRFLEA  232 (233)
Q Consensus       227 ~~~l~~  232 (233)
                      ..+.++
T Consensus       516 ~~l~~a  521 (1157)
T PRK11447        516 ALMRRL  521 (1157)
T ss_pred             HHHHHH
Confidence            988764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.15  E-value=2.1e-10  Score=102.81  Aligned_cols=117  Identities=21%  Similarity=0.297  Sum_probs=100.3

Q ss_pred             hccCcchHHHHHHHHh-----cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773          100 RRLFIPSVSGIWDALT-----GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i-----~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      .|++..+..|+|.-+.     +++++|+.|++++.+|..+...|+|+.|.+.||..+++||.+.      |.        
T Consensus        70 ERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~------Ya--------  135 (297)
T COG4785          70 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN------YA--------  135 (297)
T ss_pred             HhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch------HH--------
Confidence            3455555677776652     3489999999999999999999999999999999999999887      43        


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .+|||+++|.-|||+-|.++|.+--+.||+||-..+|+.+.+.++. +.+|+..+.+
T Consensus       136 ~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d-P~~A~tnL~q  191 (297)
T COG4785         136 HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD-PKQAKTNLKQ  191 (297)
T ss_pred             HhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC-HHHHHHHHHH
Confidence            2479999999999999999999999999999999999998888765 8888776654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.15  E-value=8.9e-10  Score=93.78  Aligned_cols=124  Identities=15%  Similarity=0.106  Sum_probs=99.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a---~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      ..+-+.+-...|...+..++  +.+|+++   .+++.+|.+++.+|++++|++.|+++++.+|+++     ...      
T Consensus        41 ~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~------  107 (235)
T TIGR03302        41 KEALDSGDYTEAIKYFEALE--SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP-----DAD------  107 (235)
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----chH------
Confidence            44445555677888999998  8888876   6889999999999999999999999999999988     210      


Q ss_pred             hhhhhhHHHHHHc--------CCcHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHH
Q 026773          173 GIILKKLIRVSHF--------NRFEEGAEQFRIDVAQNPNDTEES-----------------IWCFLCEAQLYGVDEARN  227 (233)
Q Consensus       173 ~a~~~rG~al~~l--------GryeeAi~~f~kAL~lnP~d~e~~-----------------~~~~l~~a~Lg~~dEA~~  227 (233)
                      .+++.+|.+++..        |++++|++.|+++++.+|++....                 ...+.+....|++++|..
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            1234589999887        899999999999999999986442                 123445567899999998


Q ss_pred             HHHhh
Q 026773          228 RFLEA  232 (233)
Q Consensus       228 ~~l~~  232 (233)
                      .+.++
T Consensus       188 ~~~~a  192 (235)
T TIGR03302       188 RFETV  192 (235)
T ss_pred             HHHHH
Confidence            88764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.13  E-value=6e-10  Score=99.71  Aligned_cols=115  Identities=15%  Similarity=0.115  Sum_probs=88.1

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      +++-...|..-.++++  +.||++..+|..|+.++..+|+.+-|-+.|++|+.++|++.     ..         .||-|
T Consensus        47 ~~gd~~~A~~nlekAL--~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G-----dV---------LNNYG  110 (250)
T COG3063          47 QQGDYAQAKKNLEKAL--EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG-----DV---------LNNYG  110 (250)
T ss_pred             HCCCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-----ch---------hhhhh
Confidence            3444455777777777  89999999999999999999999999999999999999988     33         33577


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPND---TEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .=++..|+|++|...|++|+. +|..   +..+-+.+.|-.+.|+.+.|+..|..
T Consensus       111 ~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r  164 (250)
T COG3063         111 AFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR  164 (250)
T ss_pred             HHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence            777777788888888877776 5543   33456667777777777777777654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.13  E-value=4.4e-10  Score=117.04  Aligned_cols=118  Identities=12%  Similarity=0.086  Sum_probs=100.1

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-..+|...+..++  +++|+++.++.++|.++..+|++++|++.|++|++++|+++     ..+++       
T Consensus       617 ~~l~~lG~~deA~~~l~~AL--~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~-----~a~~n-------  682 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAAL--ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP-----ALIRQ-------  682 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHH-------
Confidence            44555556667777888888  89999999999999999999999999999999999999998     45554       


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                        +|.++..+|++++|++.|+++++++|+++....-.+-.+...++++.|.+.+
T Consensus       683 --LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~  734 (987)
T PRK09782        683 --LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV  734 (987)
T ss_pred             --HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence              9999999999999999999999999999877665665666666677776654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.12  E-value=1.6e-09  Score=89.00  Aligned_cols=109  Identities=15%  Similarity=0.081  Sum_probs=87.6

Q ss_pred             HHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC
Q 026773          110 IWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR  187 (233)
Q Consensus       110 i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr  187 (233)
                      ....++  +.++.  .+.+|+..|.++..+|++++|+..|++|+++.|+..     ..      ..++.++|.++...|+
T Consensus        21 ~l~~~~--~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-----~~------~~~~~~lg~~~~~~g~   87 (168)
T CHL00033         21 ILLRIL--PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-----DR------SYILYNIGLIHTSNGE   87 (168)
T ss_pred             hhhHhc--cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-----hh------HHHHHHHHHHHHHcCC
Confidence            334444  34444  478889999999999999999999999999987643     11      1234579999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHh
Q 026773          188 FEEGAEQFRIDVAQNPNDTEESIWCFLCEA-------QLYGVDEARNRFLE  231 (233)
Q Consensus       188 yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a-------~Lg~~dEA~~~~l~  231 (233)
                      +++|++.|+++++++|...+.+..++.++.       .+|++++|...+.+
T Consensus        88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         88 HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            999999999999999999988877777777       77888877766654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.12  E-value=1.9e-10  Score=101.13  Aligned_cols=138  Identities=18%  Similarity=0.117  Sum_probs=85.6

Q ss_pred             chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-h---
Q 026773           94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT-I---  169 (233)
Q Consensus        94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~-~---  169 (233)
                      .+..+.+.+-++.+......+....-.|+++..|..+|.++.+.|+.++|+++|++|++++|+++. ....+.|. +   
T Consensus       116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~-~~~~l~~~li~~~  194 (280)
T PF13429_consen  116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD-ARNALAWLLIDMG  194 (280)
T ss_dssp             --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH-HHHHHHHHHCTTC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHCC
Confidence            444455666677777787776632233688999999999999999999999999999999998772 00001111 0   


Q ss_pred             --------------hh---hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          170 --------------SI---VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       170 --------------~~---~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                                    ..   ...+...|.++..+|++++|+..|+++++.+|+|+......+-++.+.|+.++|.....++
T Consensus       195 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  195 DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred             ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                          00   3455678999999999999999999999999999998888888899999999999876653

>PLN02789 farnesyltranstransferase

Probab=99.12  E-value=6.1e-10  Score=102.80  Aligned_cols=99  Identities=9%  Similarity=0.082  Sum_probs=89.4

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV--VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdy--eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      .++...++.++  +.+|++..+|.+||.+...+|+.  +++++.++++|++||++.     .. |.        .||.++
T Consensus        89 ~eeL~~~~~~i--~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy-----~A-W~--------~R~w~l  152 (320)
T PLN02789         89 EEELDFAEDVA--EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY-----HA-WS--------HRQWVL  152 (320)
T ss_pred             HHHHHHHHHHH--HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH-----HH-HH--------HHHHHH
Confidence            56778888998  89999999999999999999984  789999999999999998     33 33        599999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL  219 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L  219 (233)
                      ..+|++++|++.++++|++||+|.++|..++.+..++
T Consensus       153 ~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        153 RTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999887765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.11  E-value=2.1e-09  Score=96.98  Aligned_cols=127  Identities=7%  Similarity=-0.006  Sum_probs=93.5

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ...+.+.+-...|...+..++  +.+|.+..++..+|.++...|++++|++.++++++.+|...     ..    .....
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~----~~~~~  182 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLV--DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL-----RV----EIAHF  182 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH--cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-----hH----HHHHH
Confidence            344455556677888888887  67888888888888888888888888888888888888654     11    01112


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +.++|.++...|++++|++.|+++++.+|++.+.+...+.++.+.|++++|...+.++
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  240 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV  240 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3457777778888888888888888888877777777777777778888887776653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=3.7e-10  Score=109.95  Aligned_cols=105  Identities=14%  Similarity=0.220  Sum_probs=93.1

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +-+.+-++.|..-|+++|  +.+|+|+..|.||+.++..+|++.+|++|.+++|++||++.     ..+.         .
T Consensus       368 ~Fk~gdy~~Av~~YteAI--kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~-----kgy~---------R  431 (539)
T KOG0548|consen  368 AFKKGDYPEAVKHYTEAI--KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI-----KAYL---------R  431 (539)
T ss_pred             HHhccCHHHHHHHHHHHH--hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH-----HHHH---------H
Confidence            344556678889999999  99999999999999999999999999999999999999887     3333         4


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  218 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~  218 (233)
                      .|.++..+.+|+.|++.|.+++++||++.+..-|..-|...
T Consensus       432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            89999999999999999999999999999988887777664

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.09  E-value=1.5e-09  Score=92.41  Aligned_cols=129  Identities=12%  Similarity=0.029  Sum_probs=103.7

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCCCCccch
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAV---VAIRRGMLLFRQ--------GDVVGSVAEFDKAIELDPRQKISGKGA  164 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~---Ay~~RG~a~~~l--------GdyeeAIadfdkAIeLdP~~~~~~~~~  164 (233)
                      ..+.+.+-...|...++.++  +..|+++.   +++.+|.+++..        |++++|++.|+++++.+|++..     
T Consensus        78 ~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----  150 (235)
T TIGR03302        78 YAYYKSGDYAEAIAAADRFI--RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY-----  150 (235)
T ss_pred             HHHHhcCCHHHHHHHHHHHH--HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh-----
Confidence            34445556677888999988  88888776   799999999987        8999999999999999999872     


Q ss_pred             hhhh---------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          165 YRFT---------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND---TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       165 y~~~---------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       .+.         .........+|..++..|++++|+..|+++++..|++   ++.+..++.++.++|++++|...+.+.
T Consensus       151 -~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       151 -APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             111         0011122467889999999999999999999997765   467788889999999999999987654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.08  E-value=5.8e-10  Score=107.41  Aligned_cols=74  Identities=22%  Similarity=0.318  Sum_probs=66.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      +.+|+++++|+++|.+++.+|+|++|++.|++||+++|+++     ...+      +++|+|.+|..+|++++|++++++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a-----eA~~------A~yNLAcaya~LGr~dEAla~Lrr  137 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD-----EAQA------AYYNKACCHAYREEGKKAADCLRT  137 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----HHHH------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            57899999999999999999999999999999999999987     3211      134699999999999999999999


Q ss_pred             HHHcC
Q 026773          198 DVAQN  202 (233)
Q Consensus       198 AL~ln  202 (233)
                      |+++.
T Consensus       138 ALels  142 (453)
T PLN03098        138 ALRDY  142 (453)
T ss_pred             HHHhc
Confidence            99983

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.08  E-value=2.5e-09  Score=96.54  Aligned_cols=118  Identities=16%  Similarity=0.136  Sum_probs=94.8

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      .+.+-..+|...+++++  +.+|++..++..+|.++...|++++|++.|+++++.+|.+.     ...+        ..+
T Consensus       191 ~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~--------~~l  255 (389)
T PRK11788        191 LARGDLDAARALLKKAL--AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL-----SEVL--------PKL  255 (389)
T ss_pred             HhCCCHHHHHHHHHHHH--hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----HHHH--------HHH
Confidence            34455667888888888  78899999999999999999999999999999999998764     2222        357


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +.++...|++++|++.++++++.+|+... ....+..+.+.|++++|...+.++
T Consensus       256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~  308 (389)
T PRK11788        256 MECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQ  308 (389)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence            88888999999999999999998887643 356667777888999998887653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.07  E-value=2.1e-09  Score=108.48  Aligned_cols=118  Identities=6%  Similarity=-0.031  Sum_probs=104.2

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-.+.|...|.+++  +++|++++++..+|.++...|++++|+..++++++.+|+++     . +.        
T Consensus        57 ~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~-----~-~~--------  120 (765)
T PRK10049         57 VAYRNLKQWQNSLTLWQKAL--SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKA-----N-LL--------  120 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H-HH--------
Confidence            34455556678999999999  89999999999999999999999999999999999999998     4 33        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                       .+|.++...|++++|++.++++++++|++++.+...+.++...+..++|...+.
T Consensus       121 -~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~  174 (765)
T PRK10049        121 -ALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID  174 (765)
T ss_pred             -HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence             489999999999999999999999999999988888878878888888887665

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.06  E-value=1.4e-09  Score=97.41  Aligned_cols=95  Identities=18%  Similarity=0.173  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      +.+...+|+-|+..||+..|.+-++|||++||++.     ..+-         -|+.+|...|..+-|-+.|++|+.++|
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-----~a~~---------~~A~~Yq~~Ge~~~A~e~YrkAlsl~p  100 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-----LAHL---------VRAHYYQKLGENDLADESYRKALSLAP  100 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHH---------HHHHHHHHcCChhhHHHHHHHHHhcCC
Confidence            57889999999999999999999999999999988     3333         599999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 NDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++.+...+.|.-+|.+|+++||...|+++
T Consensus       101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~A  129 (250)
T COG3063         101 NNGDVLNNYGAFLCAQGRPEEAMQQFERA  129 (250)
T ss_pred             CccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence            99998777888899999999999999875

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.7e-09  Score=104.67  Aligned_cols=112  Identities=13%  Similarity=0.106  Sum_probs=98.9

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      ++|...+..++  ++||+...+|...|.-+..+++-..||+.|.+|+++||.+.     ..|+.         +|.+|-.
T Consensus       347 EKAv~YFkRAL--kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy-----RAWYG---------LGQaYei  410 (559)
T KOG1155|consen  347 EKAVMYFKRAL--KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY-----RAWYG---------LGQAYEI  410 (559)
T ss_pred             HHHHHHHHHHH--hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH-----HHHhh---------hhHHHHH
Confidence            45566666667  99999999999999999999999999999999999999988     45444         9999999


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++-..-|+-.|++|+++.|+|+..|.-+|-|+.++++.+||+.+|..+
T Consensus       411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra  458 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA  458 (559)
T ss_pred             hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999999999987777888899999999999988654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.05  E-value=2.7e-10  Score=83.82  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=70.8

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773          136 RQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC  215 (233)
Q Consensus       136 ~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~  215 (233)
                      .+|+|++|+..|+++++.+|.++.   ..+++         .+|.+++.+|+|++|++.+++ ++.+|.+++.....+.|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~---~~~~~---------~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPN---SAYLY---------NLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHH---HHHHH---------HHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChh---HHHHH---------HHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            369999999999999999996420   13333         489999999999999999999 99999988888888999


Q ss_pred             HHHcCCHHHHHHHHHhh
Q 026773          216 EAQLYGVDEARNRFLEA  232 (233)
Q Consensus       216 ~a~Lg~~dEA~~~~l~~  232 (233)
                      +.++|+++||+..+.++
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.04  E-value=1.6e-09  Score=93.09  Aligned_cols=97  Identities=11%  Similarity=0.079  Sum_probs=83.6

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLL-FRQGD--VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG  173 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~-~~lGd--yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~  173 (233)
                      .+...+-..+|...|..++  +++|++++++..+|.++ ...|+  +++|++.+++|++++|+++     ..++      
T Consensus        82 ~~~~~g~~~~A~~a~~~Al--~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~-----~al~------  148 (198)
T PRK10370         82 YYLWRNDYDNALLAYRQAL--QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV-----TALM------  148 (198)
T ss_pred             HHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh-----hHHH------
Confidence            3445556678888999888  99999999999999986 67788  5999999999999999998     4444      


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHH
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEES  209 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~  209 (233)
                         ++|.+++..|++++|++.|+++++++|.+.+..
T Consensus       149 ---~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        149 ---LLASDAFMQADYAQAIELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             ---HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence               499999999999999999999999999876543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.04  E-value=1.8e-09  Score=73.30  Aligned_cols=90  Identities=14%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      -+.+-...+...+..++  +..|++..++..+|.++...|++++|++.|++++++.|.+.     ..++         .+
T Consensus        11 ~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~---------~~   74 (100)
T cd00189          11 YKLGDYDEALEYYEKAL--ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-----KAYY---------NL   74 (100)
T ss_pred             HHHhcHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-----hHHH---------HH
Confidence            33445567888888888  88999999999999999999999999999999999999887     3444         49


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      |.++...|++++|.+.++++++.+|+
T Consensus        75 ~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          75 GLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999884

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.03  E-value=1.5e-09  Score=76.89  Aligned_cols=68  Identities=19%  Similarity=0.378  Sum_probs=60.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHH
Q 026773          131 GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESI  210 (233)
Q Consensus       131 G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~  210 (233)
                      ..+++..+++++|++.++++++++|+++     ..++         .+|.++..+|++++|+++|+++++.+|++++...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~---------~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDP-----ELWL---------QRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccc-----hhhH---------HHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            4678999999999999999999999998     4444         4999999999999999999999999999987654


Q ss_pred             HH
Q 026773          211 WC  212 (233)
Q Consensus       211 ~~  212 (233)
                      ..
T Consensus        68 ~~   69 (73)
T PF13371_consen   68 LR   69 (73)
T ss_pred             HH
Confidence            43

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.02  E-value=1.1e-09  Score=96.35  Aligned_cols=96  Identities=16%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd--P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      +.++..+.....++...|+++++.+.++++.+..  |+++      .+|.        .+|.++...|+.++|+++|+++
T Consensus       107 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~--------~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen  107 DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA------RFWL--------ALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -----------H-HHHTT-HHHHHHHHHHHHH-T---T-H------HHHH--------HHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH------HHHH--------HHHHHHHHcCCHHHHHHHHHHH
Confidence            3556777777888999999999999999998766  3333      4443        5999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          199 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       199 L~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                      ++++|+|++.....+..+...|+.++|+..+.
T Consensus       173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~  204 (280)
T PF13429_consen  173 LELDPDDPDARNALAWLLIDMGDYDEAREALK  204 (280)
T ss_dssp             HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            99999999876666666667788888666554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.02  E-value=2.2e-09  Score=108.33  Aligned_cols=100  Identities=10%  Similarity=0.017  Sum_probs=94.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      --|++++++.++|.+...+|++++|...++++++++|++.     .+..         +++.++.+.++++||+..++++
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~-----~a~~---------~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS-----EAFI---------LMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH-----HHHH---------HHHHHHHHhccHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999998     4544         4999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          199 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       199 L~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +..+|++++....++.|+.++|+++||.+.|.++
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~  180 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERL  180 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            9999999999999999999999999999999875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=2.4e-09  Score=104.42  Aligned_cols=115  Identities=16%  Similarity=0.133  Sum_probs=101.1

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      ..+++...+....  -++|.-+..-...|..+|..|||.+||..|++||..||+++     ..+-         ||+.+|
T Consensus       339 ~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da-----~lYs---------NRAac~  402 (539)
T KOG0548|consen  339 EAEKALKEAERKA--YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA-----RLYS---------NRAACY  402 (539)
T ss_pred             HHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh-----HHHH---------HHHHHH
Confidence            3345555555544  58898899999999999999999999999999999999998     3433         599999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR  233 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~  233 (233)
                      ..+|.+.+|++|.++++++||++...|+-.+.|+..+.+++.|.+.|.+.+
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal  453 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL  453 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998763

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.99  E-value=7.3e-09  Score=83.60  Aligned_cols=98  Identities=12%  Similarity=0.113  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      |.+++++|.++..+|+.++||..|++|++..+....     .      .+++.++|.++..+|++++|+..+++++.-.|
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~------~~a~i~lastlr~LG~~deA~~~L~~~~~~~p   69 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----R------RRALIQLASTLRNLGRYDEALALLEEALEEFP   69 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----H------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            468899999999999999999999999998776541     1      13556799999999999999999999999988


Q ss_pred             C---CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 N---DTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~---d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +   +.....+..+++..+|+.+||...++++
T Consensus        70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   70 DDELNAALRVFLALALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             CccccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            8   6666677788999999999999998864

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.99  E-value=4.4e-09  Score=94.97  Aligned_cols=116  Identities=11%  Similarity=-0.013  Sum_probs=84.9

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      .-+.+-...|..-..++.  .++|+|+++|..+|.+|.+.|++++|-..|.+|+++.|+.+     ..         ++|
T Consensus       110 ~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p-----~~---------~nN  173 (257)
T COG5010         110 QIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP-----SI---------ANN  173 (257)
T ss_pred             HHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc-----hh---------hhh
Confidence            334444555666666666  77888888888888888888888888888888888888877     22         335


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                      +|..++-.||++.|...+..+...-+.|....-++.++....|++++|.+..
T Consensus       174 lgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         174 LGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            8888888888888888888877777767666666677777788888887654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.98  E-value=8e-09  Score=104.26  Aligned_cols=118  Identities=10%  Similarity=0.050  Sum_probs=104.5

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      ....+-...|..+|..+.  ..+|..+.++..+|.++..+|++++|++.|+++++++|+++     ....         .
T Consensus        25 a~~~g~~~~A~~~~~~~~--~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~---------~   88 (765)
T PRK10049         25 ALWAGQDAEVITVYNRYR--VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND-----DYQR---------G   88 (765)
T ss_pred             HHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------H
Confidence            334444567788999988  67899999999999999999999999999999999999998     3433         4


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|.++...|++++|++.++++++.+|++++ +...+.++...|+.++|...+.++
T Consensus        89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~a  142 (765)
T PRK10049         89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQA  142 (765)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence            899999999999999999999999999999 888888899999999999998764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.98  E-value=8.9e-09  Score=77.14  Aligned_cols=100  Identities=10%  Similarity=0.119  Sum_probs=83.7

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      ..+.+.+-.++|...+..++  +.+|++   +.+++.+|.++...|++++|+..|+++++.+|+++.     .      .
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~------~   76 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFL--KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK-----A------P   76 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc-----c------c
Confidence            44555566677889999998  677766   689999999999999999999999999999998751     1      1


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                      .++...|.++..+|++++|++.++++++..|+++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            123469999999999999999999999999998753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.94  E-value=1.6e-08  Score=91.40  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=93.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      .-+|.+.+.+.-.|..+++.|+|.+|+..+.||.+++|++.     .. |+        .+|.+|-..||+++|-..|.+
T Consensus        94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~-----~~-~~--------~lgaaldq~Gr~~~Ar~ay~q  159 (257)
T COG5010          94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW-----EA-WN--------LLGAALDQLGRFDEARRAYRQ  159 (257)
T ss_pred             ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh-----hh-hh--------HHHHHHHHccChhHHHHHHHH
Confidence            36788999988899999999999999999999999999998     33 33        699999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR  233 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~  233 (233)
                      ++++.|+++....+++..+.-.|+.+.|...+++++
T Consensus       160 Al~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~  195 (257)
T COG5010         160 ALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY  195 (257)
T ss_pred             HHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999998763

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.92  E-value=1.9e-08  Score=89.93  Aligned_cols=101  Identities=13%  Similarity=-0.055  Sum_probs=86.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ..+|....++..+|.++..+|++++|++.++++++++|+++     ..+.         .+|.+++..|++++|++.+++
T Consensus       108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~-----~~~~---------~la~i~~~~g~~~eA~~~l~~  173 (355)
T cd05804         108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA-----WAVH---------AVAHVLEMQGRFKEGIAFMES  173 (355)
T ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-----HHHH---------HHHHHHHHcCCHHHHHHHHHh
Confidence            57788889999999999999999999999999999999988     3433         489999999999999999999


Q ss_pred             HHHcCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEE----SIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~----~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++..|.++..    +...+.+...+|++++|...+.++
T Consensus       174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99998865432    234567888999999999988764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1e-08  Score=94.01  Aligned_cols=100  Identities=11%  Similarity=0.028  Sum_probs=90.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC---CcHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN---RFEEGAEQ  194 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG---ryeeAi~~  194 (233)
                      ..||+|++-|..+|-+++.+|++..|...|.+|++|.|+++     ....         ..|.+++...   .-.+|.+.
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~-----~~~~---------g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP-----EILL---------GLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHHhcCCcccHHHHHH
Confidence            68999999999999999999999999999999999999999     4433         4888888874   46789999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          195 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       195 f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      |++++++||+|..+..++++...+.|++++|...+..
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~  252 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM  252 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            9999999999999988999999999999999988764

>PRK15331 chaperone protein SicA; Provisional

Probab=98.92  E-value=8.7e-09  Score=87.82  Aligned_cols=112  Identities=15%  Similarity=0.173  Sum_probs=98.5

Q ss_pred             HHHHHHHHhcc-------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          107 VSGIWDALTGG-------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       107 a~~i~~~~i~~-------~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      ++.+|+.+.++       .+.++.-+..+..|.-++.+|++++|...|.-...+||.++     .|+.         .+|
T Consensus        13 ~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~-----~Y~~---------GLa   78 (165)
T PRK15331         13 AEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP-----DYTM---------GLA   78 (165)
T ss_pred             HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-----HHHH---------HHH
Confidence            45566655421       35677778999999999999999999999999999999998     5654         499


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++..+++|++|+..|..|..++++||.+.+..+.|+..+|+.++|+..|..|
T Consensus        79 a~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a  131 (165)
T PRK15331         79 AVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELV  131 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999865

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.5e-08  Score=98.25  Aligned_cols=112  Identities=14%  Similarity=0.100  Sum_probs=100.6

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~  183 (233)
                      .+.|.+.|..++  +++|.|-.||+.+|.+|..++-+.=|+=-|.||+++.|+++      -.|+        -+|.+|.
T Consensus       380 t~AAi~sYRrAv--di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs------Rlw~--------aLG~CY~  443 (559)
T KOG1155|consen  380 THAAIESYRRAV--DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS------RLWV--------ALGECYE  443 (559)
T ss_pred             cHHHHHHHHHHH--hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch------HHHH--------HHHHHHH
Confidence            367788888888  99999999999999999999999999999999999999998      3454        5999999


Q ss_pred             HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ++++.+||+++|.+|+..+..+..++..++-...++++.+||...|.+
T Consensus       444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek  491 (559)
T KOG1155|consen  444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK  491 (559)
T ss_pred             HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999999888777767777778899999999988764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=1.3e-08  Score=99.97  Aligned_cols=128  Identities=14%  Similarity=0.115  Sum_probs=108.3

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh---------
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT---------  168 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~---------  168 (233)
                      +-+.+-+++|.=.+.+++  +.||.+++||..+|.++...++=..||..+.+|++|||++-.     ....         
T Consensus       295 lm~nG~L~~A~LafEAAV--kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle-----aLmaLAVSytNeg  367 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAV--KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE-----ALMALAVSYTNEG  367 (579)
T ss_pred             HHhcCCchHHHHHHHHHH--hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH-----HHHHHHHHHhhhh
Confidence            445556888888899898  999999999999999999999999999999999999999752     1110         


Q ss_pred             ---------------------------------------------h-----------h--h-hhhhhhhHHHHHHcCCcH
Q 026773          169 ---------------------------------------------I-----------S--I-VGIILKKLIRVSHFNRFE  189 (233)
Q Consensus       169 ---------------------------------------------~-----------~--~-~~a~~~rG~al~~lGrye  189 (233)
                                                                   +           .  + .++...+|+.++..|+|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence                                                         0           0  0 577788999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .|+.||+.||..+|+|.--|.-+|..++.-.+.+||+..|.++
T Consensus       448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA  490 (579)
T KOG1125|consen  448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA  490 (579)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence            9999999999999999875555678888888999999988654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.87  E-value=1.3e-08  Score=96.30  Aligned_cols=86  Identities=14%  Similarity=0.296  Sum_probs=77.2

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~  183 (233)
                      +.+|..-|.+++  +.||++..+++.||.+|..+|+-..|+.|++++|++.|++.     +...+         ||.++.
T Consensus        54 ~sDALt~yHaAv--e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~-----~ARiQ---------Rg~vll  117 (504)
T KOG0624|consen   54 LSDALTHYHAAV--EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM-----AARIQ---------RGVVLL  117 (504)
T ss_pred             HHHHHHHHHHHH--cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH-----HHHHH---------hchhhh
Confidence            345777888888  89999999999999999999999999999999999999987     55555         999999


Q ss_pred             HcCCcHHHHHHHHHHHHcCCCC
Q 026773          184 HFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       184 ~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      ++|.+++|..||+++|.-+|++
T Consensus       118 K~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             hcccHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999998854

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.85  E-value=6.9e-09  Score=72.88  Aligned_cols=59  Identities=22%  Similarity=0.149  Sum_probs=55.3

Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-GVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg-~~dEA~~~~l~~  232 (233)
                      ++.++|..++..|+|++|++.|+++++++|++++.+.+++.|+..+| ++++|+..+.++
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            45579999999999999999999999999999999999999999999 799999999875

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.84  E-value=4e-08  Score=95.00  Aligned_cols=113  Identities=8%  Similarity=-0.058  Sum_probs=100.7

Q ss_pred             chHHHHHHHHhc-ccCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773          105 PSVSGIWDALTG-GNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus       105 ~~a~~i~~~~i~-~~l~P~~a~Ay~~RG~a~~~l---------GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ..|..++.+++. .++||+.+.+|..++.+++..         .+-.+|++.-++|+++||+++     ...|.      
T Consensus       275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da-----~a~~~------  343 (458)
T PRK11906        275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG-----KILAI------  343 (458)
T ss_pred             HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH-----HHHHH------
Confidence            346677777763 368999999999999999765         356789999999999999999     67777      


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                         .|.++...|+++.|+..|++|+.+|||.+..+++.+......|+.++|++.+++
T Consensus       344 ---~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        344 ---MGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             ---HHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence               899999999999999999999999999999999999999999999999998876

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.83  E-value=3.1e-09  Score=78.17  Aligned_cols=78  Identities=13%  Similarity=0.245  Sum_probs=67.1

Q ss_pred             cchHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773          104 IPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR  181 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a  181 (233)
                      .+.|..++++++  +.+|.  ++..++.+|.+++++|+|++|+..+++ ++++|.+.     ...+.         .|.+
T Consensus         5 y~~Ai~~~~k~~--~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~-----~~~~l---------~a~~   67 (84)
T PF12895_consen    5 YENAIKYYEKLL--ELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP-----DIHYL---------LARC   67 (84)
T ss_dssp             HHHHHHHHHHHH--HHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH-----HHHHH---------HHHH
T ss_pred             HHHHHHHHHHHH--HHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH-----HHHHH---------HHHH
Confidence            467888999998  66774  677888899999999999999999999 99999876     45555         7999


Q ss_pred             HHHcCCcHHHHHHHHHH
Q 026773          182 VSHFNRFEEGAEQFRID  198 (233)
Q Consensus       182 l~~lGryeeAi~~f~kA  198 (233)
                      ++.+|+|++|++.++++
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=7.9e-08  Score=93.11  Aligned_cols=113  Identities=14%  Similarity=0.067  Sum_probs=100.6

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      -..+|+...+.++  +..|+|+..+-.+|.+++..|+.++|++-+++|+.++|+.+     .. +.        ++|.+|
T Consensus       321 ~~d~A~~~l~~L~--~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~-----~l-~~--------~~a~al  384 (484)
T COG4783         321 QYDEALKLLQPLI--AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP-----LL-QL--------NLAQAL  384 (484)
T ss_pred             ccchHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-----HH-HH--------HHHHHH
Confidence            3455788888888  88999999999999999999999999999999999999987     33 33        599999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ...|++.||+..+++.+.-+|+|+..|-.++-++..+|+..+|....-|
T Consensus       385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence            9999999999999999999999999888888888899999888876543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.81  E-value=1.2e-07  Score=76.47  Aligned_cols=116  Identities=15%  Similarity=0.114  Sum_probs=92.3

Q ss_pred             CcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          103 FIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      -...+...++.++  +..|+.   ..+...+|.+++..|++++|++.|+++++-.|+..      ...     .+.++++
T Consensus        26 ~~~~~~~~~~~l~--~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------l~~-----~a~l~LA   92 (145)
T PF09976_consen   26 DPAKAEAAAEQLA--KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------LKP-----LARLRLA   92 (145)
T ss_pred             CHHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------HHH-----HHHHHHH
Confidence            3455667788888  778888   68888999999999999999999999999886554      111     1345699


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++...|+|++|++.++. +.-++-.+.....+|-++...|+.++|+..|.++
T Consensus        93 ~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            999999999999999976 3334444555566788899999999999999864

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=9.8e-09  Score=98.27  Aligned_cols=126  Identities=14%  Similarity=0.176  Sum_probs=98.2

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhh-------hh--------
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYR-------FT--------  168 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~-------~~--------  168 (233)
                      .+++..+--.+.  ++|+++.++.+.||.++...++.+.|+..|++++++||+... .|..+.       |.        
T Consensus       185 ~~~a~~ea~~il--kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~-sk~~~~~~k~le~~k~~gN~~fk  261 (486)
T KOG0550|consen  185 YDEAQSEAIDIL--KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK-SKSASMMPKKLEVKKERGNDAFK  261 (486)
T ss_pred             chhHHHHHHHHH--hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhh-HHhHhhhHHHHHHHHhhhhhHhh
Confidence            344555555555  889999999999999998888888888888888888887652 010110       00        


Q ss_pred             --------------h--------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773          169 --------------I--------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  226 (233)
Q Consensus       169 --------------~--------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~  226 (233)
                                    +        ..+--|.||+.+...+||..||+.+.+.|++|||....++..++.|..-++.+++|+
T Consensus       262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV  341 (486)
T KOG0550|consen  262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV  341 (486)
T ss_pred             ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          0        013447789999999999999999999999999999998888999999999999999


Q ss_pred             HHHHhh
Q 026773          227 NRFLEA  232 (233)
Q Consensus       227 ~~~l~~  232 (233)
                      +.+.++
T Consensus       342 ~d~~~a  347 (486)
T KOG0550|consen  342 EDYEKA  347 (486)
T ss_pred             HHHHHH
Confidence            988764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.80  E-value=9.3e-09  Score=97.19  Aligned_cols=101  Identities=11%  Similarity=0.150  Sum_probs=93.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      .-+|.+.+-+..+|..++..|.+..|+..|..||++||++.     ..+         +.||.+|..+|+-..|+.|+++
T Consensus        32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y-----~ai---------frRaT~yLAmGksk~al~Dl~r   97 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY-----QAI---------FRRATVYLAMGKSKAALQDLSR   97 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH-----HHH---------HHHHHHHhhhcCCccchhhHHH
Confidence            35688999999999999999999999999999999999887     344         4599999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++.|+..-+.+.++..+.++|.+++|.+.|..|
T Consensus        98 VlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~v  132 (504)
T KOG0624|consen   98 VLELKPDFMAARIQRGVVLLKQGELEQAEADFDQV  132 (504)
T ss_pred             HHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.78  E-value=4.3e-08  Score=82.33  Aligned_cols=146  Identities=15%  Similarity=0.081  Sum_probs=101.5

Q ss_pred             hHhhhhhccCCCCCchhhhHHhhhhccCCcchhhcccccccccccc---ccccchhHHHhccCcchHHHHHHHHhcccCC
Q 026773           44 MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGH---YLQNRAPTFTRRLFIPSVSGIWDALTGGNNN  120 (233)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h---~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~  120 (233)
                      .+..|.|+.|..||---       |+-....-....+..+.+..+.   .++--.-++...+-+..|.+.|.+++  .+.
T Consensus         3 ~~hdq~vln~i~npl~~-------t~~~~~aE~~lede~~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal--~l~   73 (175)
T KOG4555|consen    3 SPHDQQVLDSIFNPLEL-------TNNLIPAESDLKDEEPDTQAIKASRELELKAIALAEAGDLDGALELFGQAL--CLA   73 (175)
T ss_pred             cHHHHHHHcccCCcccc-------cccccchhhhhcccCCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH--Hhc
Confidence            35568899998887432       3322211111111122221111   11122234555566677888899888  899


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      |.++.+|.+|+.++..+|+.++|++|.++|++|.-... +.++..         +..||.+|-.+|+-+.|..+|+.|-+
T Consensus        74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-rtacqa---------~vQRg~lyRl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen   74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-RTACQA---------FVQRGLLYRLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc-hHHHHH---------HHHHHHHHHHhCchHHHHHhHHHHHH
Confidence            99999999999999999999999999999999986655 233333         44599999999999999999999998


Q ss_pred             cCCCCHHH
Q 026773          201 QNPNDTEE  208 (233)
Q Consensus       201 lnP~d~e~  208 (233)
                      +....+..
T Consensus       144 LGS~FAr~  151 (175)
T KOG4555|consen  144 LGSKFARE  151 (175)
T ss_pred             hCCHHHHH
Confidence            87765543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.8e-08  Score=99.06  Aligned_cols=119  Identities=13%  Similarity=0.138  Sum_probs=100.9

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      .-|+..+.++.  .+.|++|-++...|.+.+..++|.+|+..|.++++--+....   ....|.    -+.+|+|.++-+
T Consensus       397 kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~---e~~~w~----p~~~NLGH~~Rk  467 (611)
T KOG1173|consen  397 KLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN---EKIFWE----PTLNNLGHAYRK  467 (611)
T ss_pred             HHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc---cccchh----HHHHhHHHHHHH
Confidence            44677777777  899999999999999999999999999999999954433320   112343    355689999999


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++||+..|+++|.+.|.+++.+.-.|+|...+|+++.|.+.|-++
T Consensus       468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa  515 (611)
T KOG1173|consen  468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA  515 (611)
T ss_pred             HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.75  E-value=6.9e-08  Score=79.87  Aligned_cols=95  Identities=13%  Similarity=0.190  Sum_probs=78.5

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~---~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      ..+.+.+-..+|...+.+++  +++|+   .+.++.++|.++..+|++++|++.+++|++++|++.     ..+.     
T Consensus        43 ~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~-----  110 (172)
T PRK02603         43 MSAQADGEYAEALENYEEAL--KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP-----SALN-----  110 (172)
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHH-----
Confidence            34445555677888999888  55554   367999999999999999999999999999999887     4443     


Q ss_pred             hhhhhhHHHHHHcCC--------------cHHHHHHHHHHHHcCCCCH
Q 026773          173 GIILKKLIRVSHFNR--------------FEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       173 ~a~~~rG~al~~lGr--------------yeeAi~~f~kAL~lnP~d~  206 (233)
                          ++|.++..+|+              +++|++.++++++++|++.
T Consensus       111 ----~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        111 ----NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             ----HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence                48999999888              6889999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.74  E-value=1.5e-07  Score=77.28  Aligned_cols=101  Identities=11%  Similarity=0.041  Sum_probs=74.2

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~---~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      +...+-...|...+..++  ++.|+   .+.+|.++|.++...|++++|++.|++|++++|.+.     ..+..  +..+
T Consensus        45 ~~~~g~~~~A~~~~~~al--~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-----~~~~~--la~i  115 (168)
T CHL00033         45 AQSEGEYAEALQNYYEAM--RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-----QALNN--MAVI  115 (168)
T ss_pred             HHHcCCHHHHHHHHHHHH--hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-----HHHHH--HHHH
Confidence            334445677888888888  55554   457999999999999999999999999999999887     33322  3344


Q ss_pred             hhhhHHHHHHcCCcH-------HHHHHHHHHHHcCCCCHH
Q 026773          175 ILKKLIRVSHFNRFE-------EGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       175 ~~~rG~al~~lGrye-------eAi~~f~kAL~lnP~d~e  207 (233)
                      +.++|..+..+|+++       +|++.|++++..+|++..
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence            444555555888877       556666678888986553

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.73  E-value=1.4e-08  Score=73.06  Aligned_cols=74  Identities=9%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      |+-+.++.++|.++..+|+|++|++.|++|+++.-..+     ..  ...++.++.++|.++..+|++++|++.++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-----DD--HPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----TH--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-----CC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44578999999999999999999999999998832222     11  112456788999999999999999999999998


Q ss_pred             c
Q 026773          201 Q  201 (233)
Q Consensus       201 l  201 (233)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            6

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.73  E-value=2.2e-07  Score=83.83  Aligned_cols=98  Identities=10%  Similarity=0.026  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          124 AVVAIRRGMLL-FRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       124 a~Ay~~RG~a~-~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      ...++..+..+ +..|+|++|+..|++.++..|+... .....+          .+|.+++..|++++|+..|+++++..
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~-a~~A~y----------~LG~~y~~~g~~~~A~~~f~~vv~~y  210 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY-QPNANY----------WLGQLNYNKGKKDDAAYYFASVVKNY  210 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc-hHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            46666676665 4467777777777777777776641 001222          35777777777777777777777666


Q ss_pred             CCC---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          203 PND---TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       203 P~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |++   ++.++..+.++..+|+.++|+..+.++
T Consensus       211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            653   444455566666677777777766543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.71  E-value=1.5e-07  Score=92.20  Aligned_cols=111  Identities=6%  Similarity=-0.040  Sum_probs=91.4

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh--CCCCCCCccchhhhhhhhhhh
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ--------GDVVGSVAEFDKAIEL--DPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l--------GdyeeAIadfdkAIeL--dP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ..|.+++.+++  +++|+++.+|..++.++...        ++.+++.+..++++++  +|..+     ..+.       
T Consensus       359 ~~A~~lle~Ai--~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~-----~~~~-------  424 (517)
T PRK10153        359 NKASDLLEEIL--KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP-----RIYE-------  424 (517)
T ss_pred             HHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh-----HHHH-------
Confidence            35777888888  99999999999999988664        2355777778887775  66555     2332       


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                        -+|..+...|++++|...+++|++++|+ ...+..++.++...|+.++|.+.+.++
T Consensus       425 --ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        425 --ILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             --HHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              3788888999999999999999999995 788899999999999999999998875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.71  E-value=1.3e-07  Score=84.46  Aligned_cols=115  Identities=14%  Similarity=0.155  Sum_probs=85.4

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-dP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      .+.+..++.+++  +.+|++..++.. |..++..|++.++.....++++. .|.++     ...      .++..+|.++
T Consensus        59 ~~~A~~~~~~~l--~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~------~~~~~~a~~~  124 (355)
T cd05804          59 LPKALALLEQLL--DDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENP-----DYW------YLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHH--HHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCC-----CcH------HHHHHHHHHH
Confidence            345666777776  667777777766 66666666666666666666542 23322     111      1234689999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ...|++++|++.++++++++|+++..+...+.++...|++++|...+.++
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~  174 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW  174 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            99999999999999999999999988888888899999999999988764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.70  E-value=3.7e-08  Score=68.67  Aligned_cols=59  Identities=17%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      +-+.+-...|..++..++  +.+|+++++|+.+|.++..+|++++|++.|+++++++|+++
T Consensus         7 ~~~~g~~~~A~~~~~~~l--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    7 LYQQGDYDEAIAAFEQAL--KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHCTHHHHHHHHHHHHH--CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHcCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            334445577999999999  89999999999999999999999999999999999999874

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.70  E-value=1.6e-07  Score=84.72  Aligned_cols=97  Identities=7%  Similarity=0.086  Sum_probs=84.1

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      .+.+-...|...|...+  +..|++   +.+++.+|.+++..|++++|+..|+++++..|+++.      .     .+++
T Consensus       154 ~~~~~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~------~-----~dAl  220 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK------A-----ADAM  220 (263)
T ss_pred             HhcCCHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------h-----hHHH
Confidence            34455667888899988  889988   689999999999999999999999999999999871      1     2466


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                      ++.|.++..+|++++|++.|+++++..|+....
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            789999999999999999999999999987753

>PRK11906 transcriptional regulator; Provisional

Probab=98.69  E-value=1.8e-07  Score=90.59  Aligned_cols=98  Identities=9%  Similarity=0.033  Sum_probs=80.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ++||+|+.|+..+|.+....|+++.|+..|++|++++|+++     ..++.         +|+++...|+.++|++..++
T Consensus       332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A-----~~~~~---------~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA-----SLYYY---------RALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH-----HHHHH---------HHHHHHHcCCHHHHHHHHHH
Confidence            89999999999999999999999999999999999999998     34444         89999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHH
Q 026773          198 DVAQNPNDTEESIWCFLC-EAQLYGVDEARNRF  229 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~-~a~Lg~~dEA~~~~  229 (233)
                      +++++|.-..+.+..-.. ...-...|+|+..+
T Consensus       398 alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (458)
T PRK11906        398 SLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY  430 (458)
T ss_pred             HhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence            999999866544332222 12334567776554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1.4e-07  Score=89.73  Aligned_cols=81  Identities=9%  Similarity=0.209  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      .++.|+++++..+++|.+|+...+++|+++|+|.     ...++         ||.++..+|+|+.|+.+|.++++++|+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~-----KALyR---------rG~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV-----KALYR---------RGQALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch-----hHHHH---------HHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999999999999     56666         999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 026773          205 DTEESIWCFLCEAQL  219 (233)
Q Consensus       205 d~e~~~~~~l~~a~L  219 (233)
                      |.+...-+..|.-+.
T Consensus       324 Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  324 NKAARAELIKLKQKI  338 (397)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            987766665554443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.68  E-value=2.4e-07  Score=93.70  Aligned_cols=100  Identities=17%  Similarity=0.104  Sum_probs=92.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHH--HH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAE--QF  195 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~--~f  195 (233)
                      +++|-.+..|+.+|..+..+|..+||.+.|.-|+.+||+++     +..-         .+|.++...|+-.-|..  ..
T Consensus       678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv-----~s~~---------Ala~~lle~G~~~la~~~~~L  743 (799)
T KOG4162|consen  678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV-----PSMT---------ALAELLLELGSPRLAEKRSLL  743 (799)
T ss_pred             hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc-----HHHH---------HHHHHHHHhCCcchHHHHHHH
Confidence            68999999999999999999999999999999999999998     4433         48999999998888888  99


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          196 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       196 ~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ..++++||.++++|++.|....++|+.++|.++|.-
T Consensus       744 ~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a  779 (799)
T KOG4162|consen  744 SDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA  779 (799)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            999999999999999999999999999999999874

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.68  E-value=2e-08  Score=97.14  Aligned_cols=104  Identities=16%  Similarity=0.165  Sum_probs=90.6

Q ss_pred             cchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           93 NRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        93 ~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      +-+.++-+...+..|...|.++|  +++||++..+.+|..++...++|.+|+.|+.+||+++|...     ..+..    
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI--~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~-----K~Y~r----   77 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAI--ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI-----KAYVR----   77 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHH--hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh-----heeee----
Confidence            33445555566778999999999  99999999999999999999999999999999999999887     33344    


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC  212 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~  212 (233)
                           ||.+...++++.+|+.+|++...+.|+++....-.
T Consensus        78 -----rg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~  112 (476)
T KOG0376|consen   78 -----RGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKI  112 (476)
T ss_pred             -----ccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence                 89999999999999999999999999999754433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.67  E-value=4.2e-08  Score=68.54  Aligned_cols=62  Identities=21%  Similarity=0.338  Sum_probs=53.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHH
Q 026773          134 LFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEES  209 (233)
Q Consensus       134 ~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~  209 (233)
                      ++..|++++|++.|+++++.+|++.     ....         .+|.++...|++++|.+.+++++..+|++++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~-----~~~~---------~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNP-----EARL---------LLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSH-----HHHH---------HHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            4678999999999999999999988     4433         599999999999999999999999999986543

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.66  E-value=8.3e-08  Score=90.94  Aligned_cols=148  Identities=16%  Similarity=0.214  Sum_probs=85.8

Q ss_pred             hhhHhhhhhccCCCC-CchhhhHHhhhhccC-Ccchhhcc-------------ccccccccccccccchhHHHhccCcch
Q 026773           42 TSMALTQHVLKPTIN-PPLYSFHRSLLTSKA-PLSVQTHI-------------NSLFSTPRGHYLQNRAPTFTRRLFIPS  106 (233)
Q Consensus        42 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~-------------n~~~~~~~~h~~~~~~~~~~r~~~~~~  106 (233)
                      --|-|.+.-+.|.-| ||.-+-.|.--.|+. |+|.-+..             +.++..  ...+.+.-..+-+.+-..+
T Consensus        38 KDkel~~Q~~~Pan~~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~dL~vd~I~~~LL~~--~SEiKE~GN~yFKQgKy~E  115 (536)
T KOG4648|consen   38 KDKELQKQPLSPANKDLPVRSHFRTDKSGKESPSSKKARSPIEKQDLPVDPIAQQLLKK--ASEIKERGNTYFKQGKYEE  115 (536)
T ss_pred             hhHHHHhCCCCccccCCchhhhcccCCCCCcCcchhhhhcchhhccCCccHHHHHHHHh--hHHHHHhhhhhhhccchhH
Confidence            356777777777654 555554455445554 43332211             111111  0011222234444454455


Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN  186 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG  186 (233)
                      |.++|...+  .++|.|+..+.+|+++|+++.+|..|..|++.|+.||-.+.              .||-.||.+...+|
T Consensus       116 AIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~--------------KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  116 AIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV--------------KAYSRRMQARESLG  179 (536)
T ss_pred             HHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--------------HHHHHHHHHHHHHh
Confidence            666666666  66777777777777777777777777777777777765443              13335777777777


Q ss_pred             CcHHHHHHHHHHHHcCCCCHH
Q 026773          187 RFEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       187 ryeeAi~~f~kAL~lnP~d~e  207 (233)
                      +.+||.+|++.+|++.|++-|
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHH
Confidence            777777777777777777554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.64  E-value=1.8e-07  Score=91.69  Aligned_cols=160  Identities=11%  Similarity=-0.023  Sum_probs=103.8

Q ss_pred             ccCCCCCchhhh-HHh-----------hhhccCCcchhhccccccccccccccccchhHHHhccCcc-------hHHHHH
Q 026773           51 LKPTINPPLYSF-HRS-----------LLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIP-------SVSGIW  111 (233)
Q Consensus        51 ~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~-------~a~~i~  111 (233)
                      .+|+-||.-|.. .|.           +..+..-+-++...+|.|+......   +.....+..+.+       .+....
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~l---a~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEK---ALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHHHhcCCccHHHHHHHHHHH
Confidence            456777766542 232           2223334677788888886544432   101111111221       122222


Q ss_pred             HHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHH
Q 026773          112 DALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEG  191 (233)
Q Consensus       112 ~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeA  191 (233)
                      .+++....+|.++.+|..+|..+...|++++|.+.+++|++++|+ .     ..         |..+|.++...|++++|
T Consensus       408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~-----~a---------~~~lG~~~~~~G~~~eA  472 (517)
T PRK10153        408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-W-----LN---------YVLLGKVYELKGDNRLA  472 (517)
T ss_pred             HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-H-----HH---------HHHHHHHHHHcCCHHHH
Confidence            223322358899999999999999999999999999999999994 4     22         23489999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHH
Q 026773          192 AEQFRIDVAQNPNDTEESIWCFLCEA-QLYGVDEARNR  228 (233)
Q Consensus       192 i~~f~kAL~lnP~d~e~~~~~~l~~a-~Lg~~dEA~~~  228 (233)
                      ++.|++|++++|.++..+.+..+++- .+...+-|..+
T Consensus       473 ~~~~~~A~~L~P~~pt~~~~~~~~f~~~~~~~~~~~~~  510 (517)
T PRK10153        473 ADAYSTAFNLRPGENTLYWIENLVFQTSVETVVPYLYR  510 (517)
T ss_pred             HHHHHHHHhcCCCCchHHHHHhccccccHHHHHHHHHh
Confidence            99999999999999975444444432 34444444433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.61  E-value=1e-07  Score=82.58  Aligned_cols=93  Identities=19%  Similarity=0.296  Sum_probs=72.5

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKISGKGAYRFT  168 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd----------yeeAIadfdkAIeLdP~~~~~~~~~y~~~  168 (233)
                      .|-++++.+...+....  ..||.|++++++-|.++..+.+          +++||.-|++||.|||+..     ..+|+
T Consensus         2 ~rl~~FE~ark~aea~y--~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h-----dAlw~   74 (186)
T PF06552_consen    2 ERLLFFEHARKKAEAAY--AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH-----DALWC   74 (186)
T ss_dssp             HHHHHHHHHHHHHHHHH--HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H-----HHHHH
T ss_pred             hHHHHHHHHHHHHHHHH--HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH-----HHHHH
Confidence            34446777888888877  8999999999999999987743          5789999999999999988     56676


Q ss_pred             hhhhhhhhhhHHHHHHcCC-----------cHHHHHHHHHHHHcCCCCHH
Q 026773          169 ISIVGIILKKLIRVSHFNR-----------FEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       169 ~~~~~a~~~rG~al~~lGr-----------yeeAi~~f~kAL~lnP~d~e  207 (233)
                               +|.++..++.           |++|.++|.+|...+|++..
T Consensus        75 ---------lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   75 ---------LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             ---------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             ---------HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                     7888877765           89999999999999999874

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.59  E-value=7.6e-07  Score=91.64  Aligned_cols=112  Identities=6%  Similarity=-0.022  Sum_probs=82.7

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      ..|...+.+++  +.+|+++.+......++...|+.++|+..+++++  +|.+.     .+.-.       ...|.++..
T Consensus        51 ~~Al~~L~qaL--~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~-----~~~~l-------lalA~ly~~  114 (822)
T PRK14574         51 APVLDYLQEES--KAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNI-----SSRGL-------ASAARAYRN  114 (822)
T ss_pred             HHHHHHHHHHH--hhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCC-----CHHHH-------HHHHHHHHH
Confidence            46777888887  8888886444477777778888888888888888  66554     23222       223667888


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|+|++|++.|+++++.+|++++.+..........++.++|+..+.++
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l  162 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL  162 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence            888888888888888888888877665656667788888888877654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.57  E-value=8.1e-07  Score=91.01  Aligned_cols=120  Identities=14%  Similarity=0.182  Sum_probs=102.7

Q ss_pred             chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773           94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG  173 (233)
Q Consensus        94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~  173 (233)
                      |-..+.| +-...|..+..++|  +.+|.++.+|+.+|.++-++||.+.|+..+-.|--|+|++.     . .|.     
T Consensus       146 AN~lfar-g~~eeA~~i~~EvI--kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-----e-~W~-----  211 (895)
T KOG2076|consen  146 ANNLFAR-GDLEEAEEILMEVI--KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-----E-LWK-----  211 (895)
T ss_pred             HHHHHHh-CCHHHHHHHHHHHH--HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-----H-HHH-----
Confidence            3334444 55577999999999  99999999999999999999999999999999999999998     3 454     


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-QLYGVDEARNRFLE  231 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a-~Lg~~dEA~~~~l~  231 (233)
                         ..+...-.+|++++|.-+|++||+.+|.+.+ ++|....+. +.|+...|...|++
T Consensus       212 ---~ladls~~~~~i~qA~~cy~rAI~~~p~n~~-~~~ers~L~~~~G~~~~Am~~f~~  266 (895)
T KOG2076|consen  212 ---RLADLSEQLGNINQARYCYSRAIQANPSNWE-LIYERSSLYQKTGDLKRAMETFLQ  266 (895)
T ss_pred             ---HHHHHHHhcccHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHhChHHHHHHHHHH
Confidence               4899999999999999999999999999976 466554444 78999999998876

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.55  E-value=1.9e-07  Score=90.27  Aligned_cols=58  Identities=19%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE---SIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~---~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|+|.+|+.+|+|++|+++|+++|+++|++++.   +++++.|++++|+.+||++.+.++
T Consensus        78 ~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         78 AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3469999999999999999999999999999975   888999999999999999999875

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.54  E-value=1.3e-07  Score=58.53  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~  157 (233)
                      |.+|+++|.++..+|++++|+.+|++||++||++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            5799999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.7e-07  Score=88.58  Aligned_cols=90  Identities=12%  Similarity=0.191  Sum_probs=78.8

Q ss_pred             HhccCcchHHHHHHHHhcccCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSR----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~----~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      -+.+....|.++|..+|  +++|+    ++.-|.+|+.+..++|+..+||.|.+.|++|||.+.        +      +
T Consensus       260 fk~G~y~~A~E~Yteal--~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi--------k------a  323 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEAL--NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI--------K------A  323 (486)
T ss_pred             hhccchhHHHHHHHHhh--cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH--------H------H
Confidence            35566778999999999  88996    566799999999999999999999999999999654        2      3


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      ++.||.++..+++|++|+++|++|++...+
T Consensus       324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            566999999999999999999999998765

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=6e-07  Score=80.01  Aligned_cols=93  Identities=14%  Similarity=0.260  Sum_probs=76.7

Q ss_pred             hccCcchHHHHHHHHhcccCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSRE-----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~-----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      +.+....|..-|..++  ++.|.-     +.-|.+||.++..++..+.||.+..|||+|+|.+-     ..         
T Consensus       107 ~ngdyeeA~skY~~Al--e~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~-----kA---------  170 (271)
T KOG4234|consen  107 KNGDYEEANSKYQEAL--ESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE-----KA---------  170 (271)
T ss_pred             hcccHHHHHHHHHHHH--HhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH-----HH---------
Confidence            4445566777888887  666653     46788999999999999999999999999999776     33         


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                      +..|+.+|-.+..|++|++||.+.++++|...++
T Consensus       171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence            3458999999999999999999999999987654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.46  E-value=4.5e-07  Score=64.08  Aligned_cols=58  Identities=14%  Similarity=0.264  Sum_probs=53.2

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      .+..-++.+...++.++  +++|+++.+|..+|.+++.+|++++|+++|+++++++|+++
T Consensus         6 ~~~~~~~~A~~~~~~~l--~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    6 LQQEDYEEALEVLERAL--ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HhCCCHHHHHHHHHHHH--HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            34455678899999999  99999999999999999999999999999999999999887

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.46  E-value=3.6e-07  Score=86.69  Aligned_cols=145  Identities=19%  Similarity=0.185  Sum_probs=108.4

Q ss_pred             hccCCcchhhccccccccccccccccchhHHHhccC-c----chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHH
Q 026773           68 TSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLF-I----PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVG  142 (233)
Q Consensus        68 ~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~-~----~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyee  142 (233)
                      +-+-|.|.+..++|.-...|-...+..-++-.+.-- +    -++.-|-+.++      +.+.-.-.+|+-+|.+|+|+|
T Consensus        42 l~~Q~~~Pan~~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~dL~vd~I~~~LL------~~~SEiKE~GN~yFKQgKy~E  115 (536)
T KOG4648|consen   42 LQKQPLSPANKDLPVRSHFRTDKSGKESPSSKKARSPIEKQDLPVDPIAQQLL------KKASEIKERGNTYFKQGKYEE  115 (536)
T ss_pred             HHhCCCCccccCCchhhhcccCCCCCcCcchhhhhcchhhccCCccHHHHHHH------HhhHHHHHhhhhhhhccchhH
Confidence            445677778888887666665554444222211110 1    12334555555      112226789999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 026773          143 SVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV  222 (233)
Q Consensus       143 AIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~  222 (233)
                      ||.+|.++|.++|.++     .++-         ||+.+|+.+.+|..|..|.+.|+.+|-....+|--++.+...+|..
T Consensus       116 AIDCYs~~ia~~P~Np-----V~~~---------NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  116 AIDCYSTAIAVYPHNP-----VYHI---------NRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             HHHHhhhhhccCCCCc-----cchh---------hHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999999988     4544         5999999999999999999999999998888877788888899999


Q ss_pred             HHHHHHHHhh
Q 026773          223 DEARNRFLEA  232 (233)
Q Consensus       223 dEA~~~~l~~  232 (233)
                      +||....+.|
T Consensus       182 ~EAKkD~E~v  191 (536)
T KOG4648|consen  182 MEAKKDCETV  191 (536)
T ss_pred             HHHHHhHHHH
Confidence            9999887654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.45  E-value=2.9e-06  Score=71.41  Aligned_cols=95  Identities=19%  Similarity=0.163  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      +..+-..|.++...|+.++|++-|.+||.+-|+.+     .         +|+||+.++-..|+.++|++++++|+++.-
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra-----S---------ayNNRAQa~RLq~~~e~ALdDLn~AleLag  108 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERA-----S---------AYNNRAQALRLQGDDEEALDDLNKALELAG  108 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch-----H---------hhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence            34556789999999999999999999999999998     3         345799999999999999999999999976


Q ss_pred             CCH----HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 NDT----EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~d~----e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .-.    .++..++..+..+|+.|.|+..|..+
T Consensus       109 ~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen  109 DQTRTACQAFVQRGLLYRLLGNDDAARADFEAA  141 (175)
T ss_pred             ccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence            543    23456677788999999999998753

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.41  E-value=6.5e-07  Score=54.78  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~  157 (233)
                      |++|+.+|.+++.+|++++|+++|++|++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            6789999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR00540 hemY_coli hemY protein

Probab=98.41  E-value=3.3e-06  Score=79.11  Aligned_cols=58  Identities=14%  Similarity=0.008  Sum_probs=49.3

Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFR--IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~--kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +....|.+++..|++++|.+.|+  ++++.+|++.. +...+..+.++|+.++|...+.++
T Consensus       337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44568999999999999999999  68889997654 567788888999999999988764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.40  E-value=4.4e-06  Score=69.76  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=81.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      ..+..++..|...+..|+|++|++.|+....--|..+      +.-+     +-+++|-+++..|+|++|++.+++-|++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~------ya~q-----AqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE------YAEQ-----AQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc------ccHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4578899999999999999999999999999999776      3333     5567999999999999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHHcCC---------------HHHHHHHHHh
Q 026773          202 NPNDTE---ESIWCFLCEAQLYG---------------VDEARNRFLE  231 (233)
Q Consensus       202 nP~d~e---~~~~~~l~~a~Lg~---------------~dEA~~~~l~  231 (233)
                      +|+++.   +++.+|++...+..               ..+|...|..
T Consensus        77 hP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~  124 (142)
T PF13512_consen   77 HPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQ  124 (142)
T ss_pred             CCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHH
Confidence            998765   34566788777765               5667766654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.39  E-value=2.1e-06  Score=73.35  Aligned_cols=91  Identities=7%  Similarity=-0.047  Sum_probs=80.5

Q ss_pred             ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      .+-..+|+.+|..+.  -.||.+++-|..+|.++..+|+|++|+..|..|..+++++|.    + .+.         .|.
T Consensus        50 ~Gk~~eA~~~F~~L~--~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~----p-~f~---------agq  113 (165)
T PRK15331         50 QGRLDEAETFFRFLC--IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR----P-VFF---------TGQ  113 (165)
T ss_pred             CCCHHHHHHHHHHHH--HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC----c-cch---------HHH
Confidence            344567888999888  799999999999999999999999999999999999999993    4 444         799


Q ss_pred             HHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          181 RVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       181 al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                      .+..+|+.++|.++|..+++ +|.+.+.
T Consensus       114 C~l~l~~~~~A~~~f~~a~~-~~~~~~l  140 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE-RTEDESL  140 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence            99999999999999999999 6776653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.36  E-value=8.7e-06  Score=72.31  Aligned_cols=87  Identities=9%  Similarity=0.027  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      .++..++..|...+..|+|++|++.|++.++..|..+      +.-     .+.+.+|.+++.+++|++|+..|++.+++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------~a~-----~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------YSQ-----QVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            5788899999999999999999999999999999876      222     24566899999999999999999999999


Q ss_pred             CCCCHHH---HHHHHHHHHHc
Q 026773          202 NPNDTEE---SIWCFLCEAQL  219 (233)
Q Consensus       202 nP~d~e~---~~~~~l~~a~L  219 (233)
                      .|+++..   ++..++|...+
T Consensus        99 ~P~~~~~~~a~Y~~g~~~~~~  119 (243)
T PRK10866         99 NPTHPNIDYVLYMRGLTNMAL  119 (243)
T ss_pred             CcCCCchHHHHHHHHHhhhhc
Confidence            9987553   45556664444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=7e-07  Score=80.87  Aligned_cols=94  Identities=19%  Similarity=0.218  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      .-+-..|.-++.-.+|..||.+|.+||.++|..+     .| |+        ||+..++++.+++.+.++.++|++++||
T Consensus        11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~-----~Y-~t--------nralchlk~~~~~~v~~dcrralql~~N   76 (284)
T KOG4642|consen   11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA-----SY-YT--------NRALCHLKLKHWEPVEEDCRRALQLDPN   76 (284)
T ss_pred             HHHHhccccccchhhhchHHHHHHHHHhcCCCcc-----hh-hh--------hHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence            3445668888999999999999999999999988     34 55        5999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          205 DTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       205 d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ....++..+.|..+..++++|+..+.++
T Consensus        77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   77 LVKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            9999999999999999999999988765

>TIGR00540 hemY_coli hemY protein

Probab=98.35  E-value=9.9e-06  Score=75.97  Aligned_cols=113  Identities=9%  Similarity=0.023  Sum_probs=94.2

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      +.|+.......  +..|+....+...|.+...+|++++|.+.++++.+..|+...    ....         .++.++..
T Consensus       101 ~~A~~~l~~~~--~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l----~~~~---------~~a~l~l~  165 (409)
T TIGR00540       101 AKAEKLIAKNA--DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI----LVEI---------ARTRILLA  165 (409)
T ss_pred             HHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch----HHHH---------HHHHHHHH
Confidence            34444444444  677888888999999999999999999999999999998751    1212         25899999


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .|++++|.+.+++.++.+|+++......+.+..++|++++|...+.+.
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l  213 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM  213 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999999998888889999999999998877653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.35  E-value=9.1e-07  Score=91.83  Aligned_cols=119  Identities=14%  Similarity=0.094  Sum_probs=95.9

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ++.+..-++.|..|.-  +.++.+|.  -.+.|..||..+...++..+||.+|..|++.||++.      ..|.      
T Consensus       535 tyae~~~we~a~~I~l--~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~------n~W~------  600 (1238)
T KOG1127|consen  535 TYAEESTWEEAFEICL--RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY------NLWL------  600 (1238)
T ss_pred             HhhccccHHHHHHHHH--HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH------HHHH------
Confidence            3334444455555522  22355553  347788899999999999999999999999999988      3344      


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                        .+|.+|...|+|..|++.|++|..++|.+....+..+..++-.|.++||.+.+.+
T Consensus       601 --gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~  655 (1238)
T KOG1127|consen  601 --GLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL  655 (1238)
T ss_pred             --HHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence              6999999999999999999999999999887777777888899999999998765

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=2.4e-06  Score=86.36  Aligned_cols=130  Identities=12%  Similarity=0.060  Sum_probs=98.4

Q ss_pred             ccccccccchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHH----------------------------HHHc
Q 026773           86 PRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGML----------------------------LFRQ  137 (233)
Q Consensus        86 ~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a----------------------------~~~l  137 (233)
                      .|.+...+-+..+..-+.-.+|+.|-.+.+  + +|+++..|..+|.+                            ....
T Consensus       422 Erlemw~~vi~CY~~lg~~~kaeei~~q~l--e-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~  498 (777)
T KOG1128|consen  422 ERLEMWDPVILCYLLLGQHGKAEEINRQEL--E-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSN  498 (777)
T ss_pred             HhHHHHHHHHHHHHHhcccchHHHHHHHHh--c-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccc
Confidence            455555544444544444444555544444  3 45555555555543                            3446


Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773          138 GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  217 (233)
Q Consensus       138 GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a  217 (233)
                      ++|+++.++++.+++++|-..     ..++         ++|-+..+++++++|+++|.+++.++|++.++|.+...++.
T Consensus       499 ~~fs~~~~hle~sl~~nplq~-----~~wf---------~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQL-----GTWF---------GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccch-----hHHH---------hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            999999999999999999877     3333         59999999999999999999999999999999888888899


Q ss_pred             HcCCHHHHHHHHHhh
Q 026773          218 QLYGVDEARNRFLEA  232 (233)
Q Consensus       218 ~Lg~~dEA~~~~l~~  232 (233)
                      +.+...+|...+.|+
T Consensus       565 ~~~~k~ra~~~l~EA  579 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEA  579 (777)
T ss_pred             HHhhhHHHHHHHHHH
Confidence            999999999888764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=4.2e-06  Score=79.79  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhh--hhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYR--FTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~--~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      +.-.-.+|..+++.|+|..|+.-|++|+..=+.... .+...-  ..--.+..++|++.++.++++|.+|++..+++|++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS-FDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc-CCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            456678999999999999999999999987553320 000000  00012567789999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|+|.-+.+-++.|++.+|+++.|+..|.+|
T Consensus       287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka  317 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALGEYDLARDDFQKA  317 (397)
T ss_pred             CCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.33  E-value=6.9e-06  Score=70.35  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      ..+++++..|...+..|+|++|++.|++.+..-|+.+.      .     -.+.+.+|.+++..|+|++|+..|++.++.
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a-----~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------A-----PQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------H-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------H-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999998772      1     135567899999999999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHHc
Q 026773          202 NPNDTE---ESIWCFLCEAQL  219 (233)
Q Consensus       202 nP~d~e---~~~~~~l~~a~L  219 (233)
                      .|+++.   ++++.+.|...+
T Consensus        72 yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   72 YPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHh
Confidence            998753   567777775543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.33  E-value=4.1e-07  Score=85.52  Aligned_cols=111  Identities=14%  Similarity=0.196  Sum_probs=87.3

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      ...+....+.+.++.+|  +++|.++..|..||.++..+++...||.|++.||+|||+...    .|-|          |
T Consensus       125 ln~G~~~~ai~~~t~ai--~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~----~ykf----------r  188 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAI--ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK----GYKF----------R  188 (377)
T ss_pred             hcCcchhhhhccccccc--ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc----ccch----------h
Confidence            33445666777777778  999999999999999999999999999999999999999882    5544          7


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  226 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~  226 (233)
                      |.+...+|++++|..++..+.+++-+.. ...|.--+.-..+..+|-+
T Consensus       189 g~A~rllg~~e~aa~dl~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~  235 (377)
T KOG1308|consen  189 GYAERLLGNWEEAAHDLALACKLDYDEA-NSATLKEVFPNAGKIEEHR  235 (377)
T ss_pred             hHHHHHhhchHHHHHHHHHHHhccccHH-HHHHHHHhccchhhhhhch
Confidence            9999999999999999999999987643 4466544433333333333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.33  E-value=4.5e-06  Score=74.52  Aligned_cols=101  Identities=15%  Similarity=0.185  Sum_probs=84.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      -++.+-.-|.-+|..|+|++|..-|..||++-|.-+.  +...       --|.|||.++.+++.++.||++..+||+++
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rs-------Ily~Nraaa~iKl~k~e~aI~dcsKaiel~  164 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERS-------ILYSNRAAALIKLRKWESAIEDCSKAIELN  164 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHH-------HHHhhhHHHHHHhhhHHHHHHHHHhhHhcC
Confidence            3556677899999999999999999999999998762  1111       124589999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          203 PNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       203 P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |.+-.+..-++.++.+...+++|+..+.++
T Consensus       165 pty~kAl~RRAeayek~ek~eealeDyKki  194 (271)
T KOG4234|consen  165 PTYEKALERRAEAYEKMEKYEEALEDYKKI  194 (271)
T ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            998877666778888999999999887653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.32  E-value=9.4e-06  Score=77.50  Aligned_cols=108  Identities=14%  Similarity=0.124  Sum_probs=93.3

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      -...+..++.++.  +.+   +++...++.++...++-.+|++..+++|+.+|+++     ...         ...+..+
T Consensus       184 ~~~~ai~lle~L~--~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~-----~LL---------~~Qa~fL  244 (395)
T PF09295_consen  184 RYDEAIELLEKLR--ERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDS-----ELL---------NLQAEFL  244 (395)
T ss_pred             cHHHHHHHHHHHH--hcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH-----HHH---------HHHHHHH
Confidence            4566777887777  444   45777889999999999999999999999999887     332         2478889


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                      ...++++.|++...+++++.|++-+.|..++.|+.++|++++|+..+
T Consensus       245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL  291 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999998765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.30  E-value=8.7e-06  Score=84.63  Aligned_cols=121  Identities=7%  Similarity=-0.098  Sum_probs=94.5

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-----------------
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-----------------  169 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-----------------  169 (233)
                      .++.|..+..+.-+|.+.++|..+..++...|++++|++..+.+++.+|+...    .+++..                 
T Consensus        14 ~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~----~yy~~G~l~~q~~~~~~~~lv~~   89 (906)
T PRK14720         14 NEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS----ALYISGILSLSRRPLNDSNLLNL   89 (906)
T ss_pred             hhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee----hHHHHHHHHHhhcchhhhhhhhh
Confidence            35677776656777888888888888888888888888888888888887762    222110                 


Q ss_pred             ------------------hh------hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 026773          170 ------------------SI------VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEA  225 (233)
Q Consensus       170 ------------------~~------~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA  225 (233)
                                        .+      -.|+..+|.+|-.+|++++|.+.|++++++||+|+....+.+..++.. +.++|
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence                              00      156677899999999999999999999999999999888887777777 99999


Q ss_pred             HHHHHhh
Q 026773          226 RNRFLEA  232 (233)
Q Consensus       226 ~~~~l~~  232 (233)
                      +..+.++
T Consensus       169 ~~m~~KA  175 (906)
T PRK14720        169 ITYLKKA  175 (906)
T ss_pred             HHHHHHH
Confidence            9887764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.27  E-value=1.3e-05  Score=75.09  Aligned_cols=113  Identities=11%  Similarity=0.013  Sum_probs=77.1

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      +.+-...|..+.....  + .|.++......|.+  ..|+++++++..++.++.+|+++     ....         -.|
T Consensus       275 ~~g~~~~A~~~L~~~l--~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~-----~l~l---------~lg  335 (398)
T PRK10747        275 ECDDHDTAQQIILDGL--K-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP-----LLWS---------TLG  335 (398)
T ss_pred             HCCCHHHHHHHHHHHH--h-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH-----HHHH---------HHH
Confidence            3333444444554444  3 33344433333332  33666666666666666666665     3333         489


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++...|++++|.+.|+++++++|++.. +.+.+.++.++|+.++|...+.+.
T Consensus       336 rl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        336 QLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999998654 578888999999999999988753

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.26  E-value=1.6e-05  Score=72.31  Aligned_cols=95  Identities=18%  Similarity=0.197  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC-
Q 026773          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND-  205 (233)
Q Consensus       127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d-  205 (233)
                      .++-+.-++..|||.+|...|.+-|.--|+... ...++||          +|.++|.+|+|++|...|..+++-.|+. 
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yW----------LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~  212 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYW----------LGESLYAQGDYEDAAYIFARVVKDYPKSP  212 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHH----------HHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence            789999999999999999999999999999873 3445667          5999999999999999999999987764 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          206 --TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       206 --~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                        |+..+-.+.|+..+|+.|+|...+.+|
T Consensus       213 KApdallKlg~~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         213 KAPDALLKLGVSLGRLGNTDEACATLQQV  241 (262)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence              677788899999999999999999876

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.24  E-value=1.5e-05  Score=82.24  Aligned_cols=110  Identities=12%  Similarity=-0.008  Sum_probs=70.0

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      -.++|..+|.+++  +.+|++++++..+++++...|++++|++.+++++.++|++.     .+ .         .++.++
T Consensus       117 dyd~Aiely~kaL--~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-----~~-l---------~layL~  179 (822)
T PRK14574        117 RWDQALALWQSSL--KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-----NY-M---------TLSYLN  179 (822)
T ss_pred             CHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-----HH-H---------HHHHHH
Confidence            4446666666666  66777777776666666667777777777777777777644     12 1         134444


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                      ..++++.+|++.++++++++|++.+.+.....++...|-..-|.+..
T Consensus       180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~  226 (822)
T PRK14574        180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA  226 (822)
T ss_pred             HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            44566666777777777777777776666666666666665555443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.23  E-value=2e-06  Score=77.49  Aligned_cols=96  Identities=16%  Similarity=0.106  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      ..+..++.||..+-..|-..-|--||++|+.|+|+-+     ..+..         +|+-+...|+|+.|.+.|+-.+++
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~-----~vfNy---------LG~Yl~~a~~fdaa~eaFds~~EL  128 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP-----EVFNY---------LGIYLTQAGNFDAAYEAFDSVLEL  128 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH-----HHHHH---------HHHHHHhcccchHHHHHhhhHhcc
Confidence            4578899999999999999999999999999999998     44444         999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          202 NPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ||.+--+..++++++..-|++.-|.+.|+.
T Consensus       129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~  158 (297)
T COG4785         129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLA  158 (297)
T ss_pred             CCcchHHHhccceeeeecCchHhhHHHHHH
Confidence            999988889999999999999999988864

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.19  E-value=7.1e-06  Score=77.61  Aligned_cols=109  Identities=9%  Similarity=0.087  Sum_probs=82.3

Q ss_pred             HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE  189 (233)
Q Consensus       110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye  189 (233)
                      .|..++  ++--.+++.+.+.|.+++..+.++-++..|++|+..-.+..           ...|+|+|+|.+..-.|++.
T Consensus       346 yYRRiL--qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~-----------~aaDvWYNlg~vaV~iGD~n  412 (478)
T KOG1129|consen  346 YYRRIL--QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG-----------QAADVWYNLGFVAVTIGDFN  412 (478)
T ss_pred             HHHHHH--HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc-----------hhhhhhhccceeEEeccchH
Confidence            344444  44445666666666666666666666666666666543221           11455668999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      -|..+|+-++.-||++.+++.+++...++.|+.++|+..+..
T Consensus       413 lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~  454 (478)
T KOG1129|consen  413 LAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA  454 (478)
T ss_pred             HHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence            999999999999999999999998888999999999987754

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.18  E-value=5.3e-06  Score=57.76  Aligned_cols=51  Identities=18%  Similarity=0.260  Sum_probs=46.3

Q ss_pred             HHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          182 VSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       182 l~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +...|++++|++.|+++++.+|++++..+.++.|+.+.|++++|...+.++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999988764

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.18  E-value=1.7e-05  Score=66.30  Aligned_cols=101  Identities=15%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             cchhHHHhccCcchHHHHHHHHhcccC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773           93 NRAPTFTRRLFIPSVSGIWDALTGGNN---NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI  169 (233)
Q Consensus        93 ~~~~~~~r~~~~~~a~~i~~~~i~~~l---~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~  169 (233)
                      .+..+++++.+ ..|...|..+.  .-   .|-...|-..+|.+++..|+|++|++.+++-|+|+|+++.   ..|    
T Consensus        16 ~a~~~l~~~~Y-~~A~~~le~L~--~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vdY----   85 (142)
T PF13512_consen   16 EAQEALQKGNY-EEAIKQLEALD--TRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VDY----   85 (142)
T ss_pred             HHHHHHHhCCH-HHHHHHHHHHH--hcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---ccH----
Confidence            34444444444 44666777775  32   3456789999999999999999999999999999999982   233    


Q ss_pred             hhhhhhhhhHHHHHHcCC---------------cHHHHHHHHHHHHcCCCCHH
Q 026773          170 SIVGIILKKLIRVSHFNR---------------FEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       170 ~~~~a~~~rG~al~~lGr---------------yeeAi~~f~kAL~lnP~d~e  207 (233)
                          +++.+|++++.+.+               ..+|..+|+..++.=|+...
T Consensus        86 ----a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   86 ----AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             ----HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence                35579999999988               89999999999999998764

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.17  E-value=2.1e-06  Score=83.39  Aligned_cols=93  Identities=15%  Similarity=0.115  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      -.-..+...+.-++|+.|+..|.|||+++|+.+     .+ +.        +|..++...++|.+|+.|+.+||+++|..
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca-----~~-~a--------nRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCA-----IY-FA--------NRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcce-----ee-ec--------hhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            344567778888999999999999999999998     34 43        59999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          206 TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       206 ~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ..+|+.++.+...++.+.+|+..|+.+
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~   98 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKV   98 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHh
Confidence            998888888888999999999998864

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.12  E-value=7.7e-05  Score=59.59  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------hhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------SIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      +.+...|......|+.+++++.+.+|+.+-......+...+-|..        ..+.+...++..+...|++++|+...+
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            344566778888999999999999999997665542212223432        347788888889999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          197 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       197 kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++.++|-+-..+...-.++...|+..+|...|.+.
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            999999999988888889999999999999998765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.12  E-value=7.7e-05  Score=66.28  Aligned_cols=126  Identities=13%  Similarity=0.074  Sum_probs=89.9

Q ss_pred             cchhHHHhccCcchHHHHHHHHhcccCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773           93 NRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVA---IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI  169 (233)
Q Consensus        93 ~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay---~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~  169 (233)
                      .+...+. .+-..+|...|..++  +..|..+.+-   +.+|.+++.+|+|++|+..|++.|+++|+++.   .++    
T Consensus        38 ~A~~~~~-~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~~----  107 (243)
T PRK10866         38 TAQQKLQ-DGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDY----  107 (243)
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hHH----
Confidence            3433333 444557888999998  8889887665   89999999999999999999999999999982   122    


Q ss_pred             hhhhhhhhhHHHHHHcCC------------------cHHHHHHHHHHHHcCCCCHHHH---HHHHHH-------------
Q 026773          170 SIVGIILKKLIRVSHFNR------------------FEEGAEQFRIDVAQNPNDTEES---IWCFLC-------------  215 (233)
Q Consensus       170 ~~~~a~~~rG~al~~lGr------------------yeeAi~~f~kAL~lnP~d~e~~---~~~~l~-------------  215 (233)
                          +++.+|.+++.+++                  -.+|++.|+..++.-|+....-   ..+..+             
T Consensus       108 ----a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~  183 (243)
T PRK10866        108 ----VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE  183 (243)
T ss_pred             ----HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                34568888766551                  2578999999999999753221   111111             


Q ss_pred             -HHHcCCHHHHHHHHHhh
Q 026773          216 -EAQLYGVDEARNRFLEA  232 (233)
Q Consensus       216 -~a~Lg~~dEA~~~~l~~  232 (233)
                       +.+.|.+..|..++.++
T Consensus       184 ~Y~~~~~y~AA~~r~~~v  201 (243)
T PRK10866        184 YYTKRGAYVAVVNRVEQM  201 (243)
T ss_pred             HHHHcCchHHHHHHHHHH
Confidence             33567777777776654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.11  E-value=3e-06  Score=52.37  Aligned_cols=33  Identities=12%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      .+++++|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            356689999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.07  E-value=6.5e-05  Score=70.46  Aligned_cols=97  Identities=10%  Similarity=-0.031  Sum_probs=80.3

Q ss_pred             CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          122 REAVVAIRRG-MLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       122 ~~a~Ay~~RG-~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      +++..++..+ .+-.++|++++|...+.+|.+.+|++.     .+...        -.+..+...|++++|++.+++.++
T Consensus       115 ~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-----~~~~l--------~~a~l~l~~g~~~~Al~~l~~~~~  181 (398)
T PRK10747        115 EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-----LPVEI--------TRVRIQLARNENHAARHGVDKLLE  181 (398)
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-----HHHHH--------HHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3466666664 444899999999999999999999875     22211        258899999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .+|++++.......++.+.|++++|...+.+
T Consensus       182 ~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~  212 (398)
T PRK10747        182 VAPRHPEVLRLAEQAYIRTGAWSSLLDILPS  212 (398)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            9999999888888889999999999966544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.05  E-value=3.7e-05  Score=75.69  Aligned_cols=89  Identities=20%  Similarity=0.083  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      ++++.++..+...|++++|++..|+||+..|..+     ..+..         +|.++-+.|++++|.+..+.|-.+|+.
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~-----ely~~---------KarilKh~G~~~~Aa~~~~~Ar~LD~~  260 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV-----ELYMT---------KARILKHAGDLKEAAEAMDEARELDLA  260 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH-----HHHHH---------HHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence            6778899999999999999999999999999988     45554         999999999999999999999999998


Q ss_pred             CHHHHHHHHHH--HHHcCCHHHHHHHH
Q 026773          205 DTEESIWCFLC--EAQLYGVDEARNRF  229 (233)
Q Consensus       205 d~e~~~~~~l~--~a~Lg~~dEA~~~~  229 (233)
                      |.  +++.-.+  ..+-|++++|...+
T Consensus       261 DR--yiNsK~aKy~LRa~~~e~A~~~~  285 (517)
T PF12569_consen  261 DR--YINSKCAKYLLRAGRIEEAEKTA  285 (517)
T ss_pred             hH--HHHHHHHHHHHHCCCHHHHHHHH
Confidence            76  4554444  44789999998865

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.05  E-value=1.7e-06  Score=81.45  Aligned_cols=85  Identities=18%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773          133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC  212 (233)
Q Consensus       133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~  212 (233)
                      -.+-.|++++||++|.+||+++|..+.     .         +.+|+.|+..+++...|+.+++.|+++||+.+..+-|+
T Consensus       123 eAln~G~~~~ai~~~t~ai~lnp~~a~-----l---------~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr  188 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELNPPLAI-----L---------YAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR  188 (377)
T ss_pred             HHhcCcchhhhhcccccccccCCchhh-----h---------cccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence            345679999999999999999998872     2         33699999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHh
Q 026773          213 FLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       213 ~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +.+...+|.+++|...+..
T Consensus       189 g~A~rllg~~e~aa~dl~~  207 (377)
T KOG1308|consen  189 GYAERLLGNWEEAAHDLAL  207 (377)
T ss_pred             hHHHHHhhchHHHHHHHHH
Confidence            9999999999999887754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.04  E-value=5.8e-05  Score=77.78  Aligned_cols=91  Identities=14%  Similarity=0.176  Sum_probs=81.1

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +..++-..++...|-.+.  -++|++.+-|...+.....+|++++|+-+|+|||+++|.+.     .+.|.         
T Consensus       183 yEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~-----~~~~e---------  246 (895)
T KOG2076|consen  183 YEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW-----ELIYE---------  246 (895)
T ss_pred             HHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch-----HHHHH---------
Confidence            344455566777776666  79999999999999999999999999999999999999998     68887         


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      |...+.++|+...|+..|.+.+.++|.
T Consensus       247 rs~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  247 RSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence            999999999999999999999999993

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.02  E-value=5.8e-05  Score=73.59  Aligned_cols=99  Identities=13%  Similarity=0.075  Sum_probs=89.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      .+|.-..+++.++..++..|++++|...++.-|...|+|+      ++|.        -+|.++...|+.++|++.++++
T Consensus       301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~------~~~~--------~~~~i~~~~nk~~~A~e~~~ka  366 (484)
T COG4783         301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP------YYLE--------LAGDILLEANKAKEAIERLKKA  366 (484)
T ss_pred             hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH------HHHH--------HHHHHHHHcCChHHHHHHHHHH
Confidence            3488999999999999999999999999999999999998      5554        4899999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          199 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       199 L~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +.++|+.+-..+..+-++.+.|+++||...+..
T Consensus       367 l~l~P~~~~l~~~~a~all~~g~~~eai~~L~~  399 (484)
T COG4783         367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNR  399 (484)
T ss_pred             HhcCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            999999877777788888899999999887653

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.02  E-value=4.4e-06  Score=53.17  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=30.3

Q ss_pred             HHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773          111 WDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVA  145 (233)
Q Consensus       111 ~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIa  145 (233)
                      |.++|  +++|+|+++|+++|.++...|++++|++
T Consensus         2 y~kAi--e~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAI--ELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHH--HHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            56777  9999999999999999999999999974

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.99  E-value=1e-05  Score=58.09  Aligned_cols=62  Identities=11%  Similarity=0.088  Sum_probs=48.8

Q ss_pred             hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          171 IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ----NPNDTE---ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       171 ~~~a~~~rG~al~~lGryeeAi~~f~kAL~l----nP~d~e---~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++.+++++|.++..+|+|++|++.|++++++    .+++++   .+...+.|...+|++++|...+.++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567889999999999999999999999976    223222   3344577888999999999999875

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4e-05  Score=75.97  Aligned_cols=175  Identities=18%  Similarity=0.148  Sum_probs=123.0

Q ss_pred             HhhhhhhhhhhhhHhhhhhc-cCCCCCchhhhHHhhhhccCCcchhhccccccccccccccc----cchhHHHhc-----
Q 026773           32 YYKFCIFFQFTSMALTQHVL-KPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQ----NRAPTFTRR-----  101 (233)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~~~----~~~~~~~r~-----  101 (233)
                      +|.=|-|-++-  .+|.-++ +-..|+|.+.+|=.-|.-..      ..|.+|-.  +|++-    +-.-+|--.     
T Consensus       254 ~y~~c~f~~c~--kit~~lle~dpfh~~~~~~~ia~l~el~------~~n~Lf~l--sh~LV~~yP~~a~sW~aVg~YYl  323 (611)
T KOG1173|consen  254 LYYGCRFKECL--KITEELLEKDPFHLPCLPLHIACLYELG------KSNKLFLL--SHKLVDLYPSKALSWFAVGCYYL  323 (611)
T ss_pred             HHHcChHHHHH--HHhHHHHhhCCCCcchHHHHHHHHHHhc------ccchHHHH--HHHHHHhCCCCCcchhhHHHHHH
Confidence            33334444332  3444444 34578999999976554332      23444432  12111    111111111     


Q ss_pred             --cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          102 --LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       102 --~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                        +-.++|...+.++.  .+||..+.+|...|..+...|+.|+|+++|.+|-++=|.-..    +..+          .|
T Consensus       324 ~i~k~seARry~SKat--~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl----P~LY----------lg  387 (611)
T KOG1173|consen  324 MIGKYSEARRYFSKAT--TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL----PSLY----------LG  387 (611)
T ss_pred             HhcCcHHHHHHHHHHh--hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc----hHHH----------HH
Confidence              13356777777777  899999999999999999999999999999999999998774    5554          69


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .-+..+++++-|.+-|..|+.+.|+||-...-.|.....-+.+.+|...|..+
T Consensus       388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~  440 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKA  440 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence            99999999999999999999999999966555665555678899999988764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.99  E-value=1.2e-05  Score=49.45  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~  157 (233)
                      +++|+.+|.++..+|++++|++.|++|++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4789999999999999999999999999999964

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.96  E-value=0.0001  Score=59.57  Aligned_cols=96  Identities=15%  Similarity=0.064  Sum_probs=75.6

Q ss_pred             chhHHHhccCcchHHHHHHHHhcccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           94 RAPTFTRRLFIPSVSGIWDALTGGNN-NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        94 ~~~~~~r~~~~~~a~~i~~~~i~~~l-~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      .+.+++..+-..+|..+|.+++...+ .+.-..+++.+|.++..+|++++|++.++++++-.|++..  ......     
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~--~~~l~~-----   79 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL--NAALRV-----   79 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHHH-----
Confidence            44556666777889999999984323 3345789999999999999999999999999999898431  002222     


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                          -.+.+++.+|+++||++.+-.++.
T Consensus        80 ----f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   80 ----FLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ----HHHHHHHHCCCHHHHHHHHHHHHH
Confidence                378999999999999999988876

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.94  E-value=3.6e-05  Score=79.86  Aligned_cols=118  Identities=13%  Similarity=0.120  Sum_probs=98.8

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      .+....+|..+|.+++  ..+|.|..|-...|.++...|++.+|++.|.++.+---++.              +.|+|.|
T Consensus       624 ~kk~~~KAlq~y~kvL--~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~--------------dv~lNla  687 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVL--RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE--------------DVWLNLA  687 (1018)
T ss_pred             HHHHHHHHHHHHHHHH--hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC--------------ceeeeHH
Confidence            3345677899999999  99999999999999999999999999999999988665554              2334799


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNP--NDTEESIWCFLCEAQLYGVDEARNRFLEAR  233 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP--~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~  233 (233)
                      .+|..+|+|-.||+.|+.+++.--  ++++....++.+....|++.+|.+..+.+|
T Consensus       688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            999999999999999999998533  456655666666778899999999998875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=6.7e-05  Score=69.13  Aligned_cols=92  Identities=12%  Similarity=0.050  Sum_probs=79.8

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG---dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      +.+-...|...|..++  ++.|+|++.+...|.++..+.   +-.+|.+.|++|+++||.+.     ...+.        
T Consensus       168 ~~~~~~~A~~AY~~A~--rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i-----ral~l--------  232 (287)
T COG4235         168 ALGRASDALLAYRNAL--RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI-----RALSL--------  232 (287)
T ss_pred             HhcchhHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH-----HHHHH--------
Confidence            3344467778888888  999999999999999998865   45789999999999999998     56666        


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e  207 (233)
                       +|..+++.|+|.+|+..|++.++..|.+..
T Consensus       233 -LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         233 -LAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             -HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence             899999999999999999999999987764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.93  E-value=0.00038  Score=52.15  Aligned_cols=112  Identities=20%  Similarity=0.248  Sum_probs=71.7

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCC--CCCCccchhhhhhhhhhhhhhhHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGM-LLFRQGDVVGSVAEFDKAIELDPR--QKISGKGAYRFTISIVGIILKKLIR  181 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~-a~~~lGdyeeAIadfdkAIeLdP~--~~~~~~~~y~~~~~~~~a~~~rG~a  181 (233)
                      ..+...+..+.  ..++.+.......+. ++...|++++|+..|+++++++|.  ...    ..         +..++..
T Consensus       112 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~---------~~~~~~~  176 (291)
T COG0457         112 EEALELLEKAL--ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELA----EA---------LLALGAL  176 (291)
T ss_pred             HHHHHHHHHHH--cCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchH----HH---------HHHhhhH
Confidence            34555666555  555555555555555 788888888888888888887773  210    11         2235555


Q ss_pred             HHHcCCcHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          182 VSHFNRFEEGAEQFRIDVAQNPN-DTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       182 l~~lGryeeAi~~f~kAL~lnP~-d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +...+++++|+..+.++++..|+ ........+.+....+..++|...+..
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  227 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEK  227 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            66777777777777777777777 455555566666666667777666544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.92  E-value=1.6e-05  Score=48.47  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=28.6

Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      ++..+|.+++.+|++++|+++|+++++++|+|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45579999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.92  E-value=3.6e-05  Score=77.99  Aligned_cols=111  Identities=8%  Similarity=0.065  Sum_probs=95.6

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~  183 (233)
                      +.++...|....  +++|-....|+.+|.+..+++++++|+.+|.+++.++|++.      ..|+        |...+|.
T Consensus       501 fs~~~~hle~sl--~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~------eaWn--------Nls~ayi  564 (777)
T KOG1128|consen  501 FSEADKHLERSL--EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA------EAWN--------NLSTAYI  564 (777)
T ss_pred             HHHHHHHHHHHh--hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch------hhhh--------hhhHHHH
Confidence            344556666666  89999999999999999999999999999999999999998      3454        7999999


Q ss_pred             HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                      .+|+-.+|-..+.+|++-|-.+...|-+.-+.....|.+++|...+-
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence            99999999999999999997776655555577779999999987764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.89  E-value=5.9e-05  Score=74.23  Aligned_cols=110  Identities=12%  Similarity=0.117  Sum_probs=87.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       117 ~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      |+.+|.-+.++.++|.+|...|+|++|...+++|++|--...      -.....+...+.+.+.++..++++++|+..+.
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q  349 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQ  349 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            468899999999999999999999999999999999965421      00111334456789999999999999999999


Q ss_pred             HHHHcC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          197 IDVAQN-----PND---TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       197 kAL~ln-----P~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++-     +++   +..+..++-++.+.|+++||.+.+.++
T Consensus       350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a  393 (508)
T KOG1840|consen  350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA  393 (508)
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            998862     233   334456677788999999999988764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.00012  Score=71.14  Aligned_cols=96  Identities=17%  Similarity=0.095  Sum_probs=82.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      ++-..+.-|+.-|..++..++|+.|+..-+|+|+.||++.     +.+.         -+|.++..+||.++|+-.|+.|
T Consensus       295 ~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~-----~ali---------lKG~lL~~~~R~~~A~IaFR~A  360 (564)
T KOG1174|consen  295 KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH-----EALI---------LKGRLLIALERHTQAVIAFRTA  360 (564)
T ss_pred             hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-----hHHH---------hccHHHHhccchHHHHHHHHHH
Confidence            3345667788888889999999999999999999999998     3333         4899999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773          199 VAQNPNDTEESIWCFLCEAQLYGVDEARNR  228 (233)
Q Consensus       199 L~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~  228 (233)
                      +.+.|.+.+.|-.+.-|+...|+.+||...
T Consensus       361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~  390 (564)
T KOG1174|consen  361 QMLAPYRLEIYRGLFHSYLAQKRFKEANAL  390 (564)
T ss_pred             HhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence            999999998776677778888999998754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.86  E-value=9.7e-05  Score=76.79  Aligned_cols=99  Identities=18%  Similarity=0.022  Sum_probs=72.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV  199 (233)
Q Consensus       120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL  199 (233)
                      .+--++.++++|.++..+|||++|...|-+|+..+|++..    -.++         .+|..+.+.|++++|+.+|++.+
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~----l~~~---------GlgQm~i~~~dle~s~~~fEkv~  369 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV----LPLV---------GLGQMYIKRGDLEESKFCFEKVL  369 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc----cccc---------chhHHHHHhchHHHHHHHHHHHH
Confidence            3455677888888888888888888888888888888741    1222         48888888888888888888888


Q ss_pred             HcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHh
Q 026773          200 AQNPNDTEESIWCFLCEAQLY----GVDEARNRFLE  231 (233)
Q Consensus       200 ~lnP~d~e~~~~~~l~~a~Lg----~~dEA~~~~l~  231 (233)
                      +.+|++.+..-.+|..++..+    ..|.|...+.+
T Consensus       370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K  405 (1018)
T KOG2002|consen  370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK  405 (1018)
T ss_pred             HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence            888888887666666666553    34555555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.84  E-value=0.001  Score=49.88  Aligned_cols=117  Identities=15%  Similarity=0.100  Sum_probs=85.9

Q ss_pred             ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      .+....+.............+.....+...|......+++++|++.+.+++..++...     .....         .+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------~~~  137 (291)
T COG0457          72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-----LAEAL---------LAL  137 (291)
T ss_pred             cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-----hHHHH---------HHH
Confidence            3333444444444441126789999999999999999999999999999999998874     12222         455


Q ss_pred             -HHHHcCCcHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          181 -RVSHFNRFEEGAEQFRIDVAQNPN---DTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       181 -al~~lGryeeAi~~f~kAL~lnP~---d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                       ++...|++++|+..|.+++..+|.   ...............++.++|...+.+
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  192 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK  192 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence             899999999999999999998873   333333333335577889999887765

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.83  E-value=2.7e-05  Score=51.37  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      |++|..+|.++..+|++++|++.|+++++.+|+++
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            47899999999999999999999999999999998

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.82  E-value=0.00064  Score=54.76  Aligned_cols=89  Identities=15%  Similarity=0.087  Sum_probs=72.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH---HHH
Q 026773          133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT---EES  209 (233)
Q Consensus       133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~---e~~  209 (233)
                      .....|+...+.+.+++.++-.|+.+      |..     .+.+.+|.+++..|++++|++.|++++...|++.   ...
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~~s~------ya~-----~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen   20 QALQAGDPAKAEAAAEQLAKDYPSSP------YAA-----LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCh------HHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            33468999999999999999999886      222     3567799999999999999999999999887653   234


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhh
Q 026773          210 IWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       210 ~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +.++.++..+|++++|...+.++
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~~  111 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQI  111 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhc
Confidence            55667788999999999998653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.81  E-value=0.00018  Score=69.68  Aligned_cols=117  Identities=16%  Similarity=0.157  Sum_probs=93.1

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~  183 (233)
                      .+.++.+.+...  +.-|+.+--.+..|.++...|+.++|++.|++|++......     ...     .-.+.++|+.+.
T Consensus       249 ~~~a~~lL~~~~--~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-----Ql~-----~l~~~El~w~~~  316 (468)
T PF10300_consen  249 LEEAEELLEEML--KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-----QLH-----HLCYFELAWCHM  316 (468)
T ss_pred             HHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-----hHH-----HHHHHHHHHHHH
Confidence            355667777666  77899999999999999999999999999999996554333     111     123456999999


Q ss_pred             HcCCcHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCH-------HHHHHHHHhh
Q 026773          184 HFNRFEEGAEQFRIDVAQNPNDTEESIW-CFLCEAQLYGV-------DEARNRFLEA  232 (233)
Q Consensus       184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~-~~l~~a~Lg~~-------dEA~~~~l~~  232 (233)
                      .+++|++|.+.|.+..+.+.-....|.+ .+.|+..+|+.       ++|...|.+|
T Consensus       317 ~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  317 FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            9999999999999999988765544433 56888899999       8888888765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.78  E-value=9.1e-05  Score=75.45  Aligned_cols=93  Identities=11%  Similarity=0.070  Sum_probs=80.7

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVA--EFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIa--dfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      +..++.+.+|...|..+.  .+||++..+-..+|-++...|+..-|.+  -..-|+++||.++     ..|+        
T Consensus       694 ~~~~~~~~EA~~af~~Al--~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~-----eaW~--------  758 (799)
T KOG4162|consen  694 LEVKGQLEEAKEAFLVAL--ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH-----EAWY--------  758 (799)
T ss_pred             HHHHHhhHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH-----HHHH--------
Confidence            344445566777777777  8999999999999999999999888888  9999999999999     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~  206 (233)
                       ++|.++..+|+.++|.++|..|+++++.+|
T Consensus       759 -~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  759 -YLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             -HHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence             599999999999999999999999999877

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.78  E-value=5e-05  Score=50.06  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=34.2

Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC  212 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~  212 (233)
                      +++.+|.++..+|++++|++.|+++++.+|+|++.+...
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            445799999999999999999999999999999865443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.75  E-value=0.00025  Score=69.95  Aligned_cols=120  Identities=14%  Similarity=0.108  Sum_probs=87.0

Q ss_pred             hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF  185 (233)
Q Consensus       106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l  185 (233)
                      .+.+|+..+. ++-+|.-+..+.++|.+++.+|+|+||.+.|.+||++.-...  |++.+..    .-.++++|..+..+
T Consensus       350 ~al~i~~~~~-g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~--~~~~~~~----~~~l~~la~~~~~~  422 (508)
T KOG1840|consen  350 KALKIYLDAP-GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL--GKKDYGV----GKPLNQLAEAYEEL  422 (508)
T ss_pred             HHHHHHHhhc-cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--cCcChhh----hHHHHHHHHHHHHh
Confidence            3444444333 245567789999999999999999999999999999985433  1111211    12455699999999


Q ss_pred             CCcHHHHHHHHHHHHcC----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          186 NRFEEGAEQFRIDVAQN----PNDTE---ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       186 GryeeAi~~f~kAL~ln----P~d~e---~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|.+.|++++.+.    |+++.   .+.+++..+..+|++++|...-+.|
T Consensus       423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            99999999999988763    44433   3455566678999999998876543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.00012  Score=66.70  Aligned_cols=104  Identities=12%  Similarity=0.029  Sum_probs=82.7

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      ..+.|.+.|..+|  .++|+.+.-|.+|+.++++..+++....|..+|++++|+..     ...+.         +|..+
T Consensus        25 ~y~~ai~~y~raI--~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v-----k~h~f---------lg~~~   88 (284)
T KOG4642|consen   25 RYDDAIDCYSRAI--CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV-----KAHYF---------LGQWL   88 (284)
T ss_pred             hhchHHHHHHHHH--hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH-----HHHHH---------HHHHH
Confidence            4466777999999  89999999999999999999999999999999999999988     44454         89999


Q ss_pred             HHcCCcHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCH
Q 026773          183 SHFNRFEEGAEQFRIDVAQN---PNDTEESIWCFLCEAQLYGV  222 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~ln---P~d~e~~~~~~l~~a~Lg~~  222 (233)
                      .....|++||+.+.+|..+-   |-....-++..+-.++-.++
T Consensus        89 l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w  131 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRW  131 (284)
T ss_pred             HhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCcc
Confidence            99999999999999995541   11111125555555544433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.00032  Score=63.94  Aligned_cols=105  Identities=11%  Similarity=0.168  Sum_probs=85.4

Q ss_pred             ccccchhHHHhccCcchHHHHHHHHhcccCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhh
Q 026773           90 YLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYR  166 (233)
Q Consensus        90 ~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~---~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~  166 (233)
                      .+++++..+.... ...|+.-|..-+  +.-|+   -++|++.+|.+++.+|||++|...|.++++-.|+.+     .. 
T Consensus       144 ~Y~~A~~~~ksgd-y~~A~~~F~~fi--~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-----KA-  214 (262)
T COG1729         144 LYNAALDLYKSGD-YAEAEQAFQAFI--KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-----KA-  214 (262)
T ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHH--HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-----CC-
Confidence            4555655565555 445666666666  54554   579999999999999999999999999999999887     21 


Q ss_pred             hhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          167 FTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       167 ~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                           -|+++.+|.++..+|+.++|...|+++++.=|+.+.+
T Consensus       215 -----pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         215 -----PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             -----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence                 3577889999999999999999999999999987654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.72  E-value=3.3e-05  Score=49.08  Aligned_cols=34  Identities=18%  Similarity=0.058  Sum_probs=31.5

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773          194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARN  227 (233)
Q Consensus       194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~  227 (233)
                      .|++||+++|+|++.+.+++.++..+|+.++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999973

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.72  E-value=0.00018  Score=72.31  Aligned_cols=101  Identities=8%  Similarity=0.023  Sum_probs=68.8

Q ss_pred             HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE  189 (233)
Q Consensus       110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye  189 (233)
                      ..++++  +..|.+.+.....|..+.-+|+-++|......+++.||...      .-|.        -.|+++-.-.+|+
T Consensus        29 ~~~~iL--~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~------vCwH--------v~gl~~R~dK~Y~   92 (700)
T KOG1156|consen   29 LIKQIL--KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH------VCWH--------VLGLLQRSDKKYD   92 (700)
T ss_pred             HHHHHH--HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc------hhHH--------HHHHHHhhhhhHH
Confidence            334445  56777777777777777777777777777777777777766      2343        3677777777777


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773          190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  226 (233)
Q Consensus       190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~  226 (233)
                      ||+++|+.|++++|+|.+.+.-..+...++++++...
T Consensus        93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence            7777777777777777764433444455566555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.70  E-value=0.00033  Score=66.15  Aligned_cols=115  Identities=16%  Similarity=0.067  Sum_probs=68.9

Q ss_pred             HhccCcchHHHHHHHHhcccCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG  173 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~-----~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~  173 (233)
                      +...-|.+|.+.-.+..  ++.|.     -+.-|..++.......+.+.|+..+.||++-||+..     .....     
T Consensus       152 Q~treW~KAId~A~~L~--k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv-----RAsi~-----  219 (389)
T COG2956         152 QATREWEKAIDVAERLV--KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV-----RASII-----  219 (389)
T ss_pred             HHhhHHHHHHHHHHHHH--HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce-----ehhhh-----
Confidence            33335666666655554  22222     244566666666666777777777777777777666     33222     


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHcCCHHHHHHHH
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESI-WCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~-~~~l~~a~Lg~~dEA~~~~  229 (233)
                          +|.+....|+|+.|++.++++++.||+.....+ -+.-|+.++|+.++....+
T Consensus       220 ----lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         220 ----LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             ----hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                677777777777777777777777776543332 2345666777766665544

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.00019  Score=67.82  Aligned_cols=99  Identities=12%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      .|.-|-.-|+-++..++|..|+..|.+.|.-+-.++     ...-     --|.||+.+.+.+|+|..|++|..+++.++
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-----dlna-----vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~  149 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-----DLNA-----VLYTNRAAAQLYLGNYRSALNDCSAALKLK  149 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-----cHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            567788889999999999999999999999987666     2211     135689999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          203 PNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       203 P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      |.+..+++--+.|...|.++++|....++
T Consensus       150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee  178 (390)
T KOG0551|consen  150 PTHLKAYIRGAKCLLELERFAEAVNWCEE  178 (390)
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence            99998755556899999998887766543

>PRK10941 hypothetical protein; Provisional

Probab=97.69  E-value=0.00035  Score=63.67  Aligned_cols=75  Identities=11%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      ....++=.++...++++.|+++.++.+.++|+++      +-|.        .||.+++++|.+..|++|++..++..|+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp------~e~R--------DRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDP------YEIR--------DRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH------HHHH--------HHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            3445666788999999999999999999999998      5566        6999999999999999999999999999


Q ss_pred             CHHHHHHHH
Q 026773          205 DTEESIWCF  213 (233)
Q Consensus       205 d~e~~~~~~  213 (233)
                      ++.+.....
T Consensus       248 dp~a~~ik~  256 (269)
T PRK10941        248 DPISEMIRA  256 (269)
T ss_pred             chhHHHHHH
Confidence            998755543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.68  E-value=0.00062  Score=58.31  Aligned_cols=118  Identities=13%  Similarity=0.074  Sum_probs=80.3

Q ss_pred             cCcchHHHHHHHHhcccCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773          102 LFIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus       102 ~~~~~a~~i~~~~i~~~l~P---~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      +-...|...+..++  ..-|   --+.+.+.+|.+++..|+|++|+..|++.|+..|+++.     .      -.+++.+
T Consensus        19 g~y~~Ai~~f~~l~--~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-----~------~~A~Y~~   85 (203)
T PF13525_consen   19 GDYEEAIKLFEKLI--DRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-----A------DYALYML   85 (203)
T ss_dssp             T-HHHHHHHHHHHH--HH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-----H------HHHHHHH
T ss_pred             CCHHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-----h------hhHHHHH
Confidence            34456777888887  4444   56689999999999999999999999999999999882     1      1244568


Q ss_pred             HHHHHHcCC-----------cHHHHHHHHHHHHcCCCCHHHH---H--------------HHHHHHHHcCCHHHHHHHHH
Q 026773          179 LIRVSHFNR-----------FEEGAEQFRIDVAQNPNDTEES---I--------------WCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       179 G~al~~lGr-----------yeeAi~~f~kAL~lnP~d~e~~---~--------------~~~l~~a~Lg~~dEA~~~~l  230 (233)
                      |.+++.+.+           ..+|+..|+..++.-|+.+...   .              ..+.-+.+.|.+..|..++.
T Consensus        86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~  165 (203)
T PF13525_consen   86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ  165 (203)
T ss_dssp             HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred             HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            888777643           4589999999999999864331   0              01112335677777777776


Q ss_pred             hh
Q 026773          231 EA  232 (233)
Q Consensus       231 ~~  232 (233)
                      .|
T Consensus       166 ~v  167 (203)
T PF13525_consen  166 YV  167 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.64  E-value=0.00026  Score=64.61  Aligned_cols=122  Identities=15%  Similarity=0.197  Sum_probs=83.0

Q ss_pred             HHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-----------Cccch----hh-hh---
Q 026773          108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI-----------SGKGA----YR-FT---  168 (233)
Q Consensus       108 ~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~-----------~~~~~----y~-~~---  168 (233)
                      ++-++.++.+--+-.+.+....+=.++..+++++.|.+.++++-+++.+...           .|.+.    ++ +.   
T Consensus       115 ~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~  194 (290)
T PF04733_consen  115 EGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELS  194 (290)
T ss_dssp             CCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            4555555532222267787777778888888888888888888888766432           01000    00 00   


Q ss_pred             ---hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          169 ---ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       169 ---~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                         ..=..+.+..+.++..+|+|+||.+.+..+++.+|++++..++...|...+|...++..++
T Consensus       195 ~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  195 DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence               0114567789999999999999999999999999999999888888888999884544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.63  E-value=0.00014  Score=76.16  Aligned_cols=116  Identities=14%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccch-------hhhhh---------------hhhhh
Q 026773          117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGA-------YRFTI---------------SIVGI  174 (233)
Q Consensus       117 ~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~-------y~~~~---------------~~~~a  174 (233)
                      +.+||+.+.+|..+|.+|...-|...|-.+|+||.+|||.++..|+..       .-|..               .-...
T Consensus       485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n  564 (1238)
T KOG1127|consen  485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN  564 (1238)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence            389999999999999999888899999999999999999987411100       00110               11455


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +..||..+...+++..|+.+|.-|++.+|+|...|.-.|-++...|++..|...|.++
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            6689999999999999999999999999999987666666777899999999998653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.00067  Score=64.10  Aligned_cols=136  Identities=9%  Similarity=0.024  Sum_probs=113.6

Q ss_pred             ccccccccchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchh
Q 026773           86 PRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAY  165 (233)
Q Consensus        86 ~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y  165 (233)
                      .|.+-++.-..-|-+.++...|+.+|..+.  ...---..|.-++-.+|-.-.++++||+.-++-..++|...     . 
T Consensus       105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~--de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~-----~-  176 (389)
T COG2956         105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLV--DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY-----R-  176 (389)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-----h-
Confidence            555666666778889999999999999987  33334457888999999999999999999999999999754     1 


Q ss_pred             hhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          166 RFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       166 ~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                         .-|.--|-.++..+....+.+.|+..+.+|++.||+...+.+.+|-.....|+++.|.+.++.|
T Consensus       177 ---~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         177 ---VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             ---hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence               1123345578888999999999999999999999999999999999999999999999988764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.00014  Score=71.39  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=55.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      .+|--|+.|..+.|.+-+..||+++|.+-|..|+.-|..-.     .         +++|.|+.+-.+|+.++|+++|-+
T Consensus       484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-----e---------alfniglt~e~~~~ldeald~f~k  549 (840)
T KOG2003|consen  484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-----E---------ALFNIGLTAEALGNLDEALDCFLK  549 (840)
T ss_pred             cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-----H---------HHHHhcccHHHhcCHHHHHHHHHH
Confidence            55556666666666666666666666666666665554332     1         223356666666666666666655


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                      .-.+=-++++.....+..+..+.+...|++.+.
T Consensus       550 lh~il~nn~evl~qianiye~led~aqaie~~~  582 (840)
T KOG2003|consen  550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLM  582 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            544444555554445555555555555555543

>smart00028 TPR Tetratricopeptide repeats

Probab=97.59  E-value=0.0001  Score=41.31  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~  157 (233)
                      .+|..+|.++..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999999963

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.56  E-value=0.00018  Score=62.60  Aligned_cols=79  Identities=15%  Similarity=0.079  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC----------cHHHHHHHHHHHHcCCCCHHHH
Q 026773          140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR----------FEEGAEQFRIDVAQNPNDTEES  209 (233)
Q Consensus       140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr----------yeeAi~~f~kAL~lnP~d~e~~  209 (233)
                      |+.|.+.++.+...||.++     ....         ++|.++..+.+          +++|++-|++||.+||+..+++
T Consensus         7 FE~ark~aea~y~~nP~Da-----dnL~---------~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAl   72 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDA-----DNLT---------NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDAL   72 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-H-----HHHH---------HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred             HHHHHHHHHHHHHhCcHhH-----HHHH---------HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            7899999999999999998     3333         48888887744          5788999999999999999987


Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHhh
Q 026773          210 IWCFLCEAQL----YGVDEARNRFLEA  232 (233)
Q Consensus       210 ~~~~l~~a~L----g~~dEA~~~~l~~  232 (233)
                      ...|.++..+    .+..+|...|.++
T Consensus        73 w~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   73 WCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            7777776644    3445666666543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.0012  Score=60.47  Aligned_cols=50  Identities=18%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      |-.+|+++.  .--|++..+-...|+.+-..|.+++|++.|+.-++=||.+.
T Consensus        71 Aq~C~~~L~--~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~  120 (289)
T KOG3060|consen   71 AQKCINQLR--DRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT  120 (289)
T ss_pred             HHHHHHHHH--HhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh
Confidence            444555544  22266666666666666666666666666666666666665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.56  E-value=0.00081  Score=67.06  Aligned_cols=124  Identities=10%  Similarity=-0.026  Sum_probs=81.4

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCCccchhhhhh---
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKISGKGAYRFTI---  169 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL--dP~~~~~~~~~y~~~~---  169 (233)
                      +..+.+.+...+|..+|+...     +.+..+|..+...+.+.|++++|++.|++..+.  .|+..     .+...+   
T Consensus       266 i~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~-----t~~~ll~a~  335 (697)
T PLN03081        266 IDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF-----TFSIMIRIF  335 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHH
Confidence            456677777777888887554     678899999999999999999999999998763  45433     111100   


Q ss_pred             ----------hh------------hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773          170 ----------SI------------VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARN  227 (233)
Q Consensus       170 ----------~~------------~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~  227 (233)
                                .+            +.+++.+...|.+.|+.++|.+.|++..+  | |...|..+..++++.|+.++|.+
T Consensus       336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~  412 (697)
T PLN03081        336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVE  412 (697)
T ss_pred             HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHH
Confidence                      00            22344555666677777777777776543  3 23334444456667777777777


Q ss_pred             HHHh
Q 026773          228 RFLE  231 (233)
Q Consensus       228 ~~l~  231 (233)
                      .|.+
T Consensus       413 lf~~  416 (697)
T PLN03081        413 MFER  416 (697)
T ss_pred             HHHH
Confidence            7765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.55  E-value=0.00079  Score=67.12  Aligned_cols=133  Identities=11%  Similarity=-0.011  Sum_probs=81.2

Q ss_pred             chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCCccchhhhhh-
Q 026773           94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL---DPRQKISGKGAYRFTI-  169 (233)
Q Consensus        94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL---dP~~~~~~~~~y~~~~-  169 (233)
                      -+..+.+.+...+|..++++.......|+ ...|...-.++...|+.++|.+.|++..+-   .|+..     .|.-.+ 
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~-----~y~~li~  470 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM-----HYACMIE  470 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-----chHhHHH
Confidence            34455555555556666665543233343 333444445555555555555555555432   23211     000000 


Q ss_pred             ---------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773          170 ---------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR  228 (233)
Q Consensus       170 ---------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~  228 (233)
                                           .-+.+|..+..++...|+.+.|...+++.++++|++...+..+..++++.|++++|...
T Consensus       471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence                                 00122345667778889999999999999999999888887788889999999999998


Q ss_pred             HHhh
Q 026773          229 FLEA  232 (233)
Q Consensus       229 ~l~~  232 (233)
                      +.+.
T Consensus       551 ~~~m  554 (697)
T PLN03081        551 VETL  554 (697)
T ss_pred             HHHH
Confidence            8764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.54  E-value=0.0014  Score=64.82  Aligned_cols=119  Identities=17%  Similarity=0.187  Sum_probs=95.6

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+++.+-..+|...-+.+|  +.+|..++.|..+|.++-..|++++|.+..+.|-+||+.+-      |.+.        
T Consensus       203 hyd~~g~~~~Al~~Id~aI--~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR------yiNs--------  266 (517)
T PF12569_consen  203 HYDYLGDYEKALEYIDKAI--EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR------YINS--------  266 (517)
T ss_pred             HHHHhCCHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH------HHHH--------
Confidence            3555555678888888888  89999999999999999999999999999999999999775      5554        


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCC------CHHHHHH----HHHHHHHcCCHHHHHHHHHhh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPN------DTEESIW----CFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~------d~e~~~~----~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .-...+.+.|+.++|.+.+..-.+-+-+      +.+ ..|    .+.|+.++|++-.|+.+|..|
T Consensus       267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ-c~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ-CMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4567778889999999999877665521      111 133    356777899999999998764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.53  E-value=0.00053  Score=69.06  Aligned_cols=102  Identities=13%  Similarity=0.056  Sum_probs=87.2

Q ss_pred             cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773          116 GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF  195 (233)
Q Consensus       116 ~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f  195 (233)
                      |+..|+.+..-|..+|.++..-.+|++||.+|..|+.++|+|-      -.|.        +++....++++|+...+.-
T Consensus        67 glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~------qilr--------DlslLQ~QmRd~~~~~~tr  132 (700)
T KOG1156|consen   67 GLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL------QILR--------DLSLLQIQMRDYEGYLETR  132 (700)
T ss_pred             HhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH------HHHH--------HHHHHHHHHHhhhhHHHHH
Confidence            4489999999999999999999999999999999999999998      3344        6899999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          196 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       196 ~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .+-++++|.....|+-.+.+.-.+|.+..|...+.+
T Consensus       133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e  168 (700)
T KOG1156|consen  133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE  168 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998876544444444478999998877654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.46  E-value=0.0048  Score=54.98  Aligned_cols=122  Identities=10%  Similarity=0.138  Sum_probs=97.1

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      .++.+.+-..++...|.+++.+ +-..++.....++.+.+..+++.+|....|+..+-+|..-.    +        +-.
T Consensus        97 ~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~----p--------d~~  163 (251)
T COG4700          97 NALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS----P--------DGH  163 (251)
T ss_pred             HHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC----C--------Cch
Confidence            3444555446777888887633 55688999999999999999999999999999999987541    1        112


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +-.|.++...|++++|...|+.++.--|+ ++.....+--++++|+.+||...+.+
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            34799999999999999999999999886 66667777778899999999887654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.44  E-value=0.00078  Score=60.36  Aligned_cols=130  Identities=16%  Similarity=0.144  Sum_probs=85.1

Q ss_pred             cchhHHHhccCcchHHHHHHHHhcc---cCCC-CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCCCccchhhh
Q 026773           93 NRAPTFTRRLFIPSVSGIWDALTGG---NNNS-REAVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPRQKISGKGAYRF  167 (233)
Q Consensus        93 ~~~~~~~r~~~~~~a~~i~~~~i~~---~l~P-~~a~Ay~~RG~a~~~l-GdyeeAIadfdkAIeLdP~~~~~~~~~y~~  167 (233)
                      +++..+.+. -...|..++..++..   .-+| .-+..+...|.++... |++++|++.|++|+++--...     ... 
T Consensus        80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-----~~~-  152 (282)
T PF14938_consen   80 EAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-----SPH-  152 (282)
T ss_dssp             HHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------HH-
T ss_pred             HHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-----Chh-
Confidence            444444444 444566677766521   1122 2367889999999888 999999999999999843322     111 


Q ss_pred             hhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC------H-HHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          168 TISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND------T-EESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       168 ~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d------~-e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                        ...+.+.+.|.++..+|+|++|++.|++.....-++      . +.++.-.+|....||.-.|...+.+
T Consensus       153 --~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~  221 (282)
T PF14938_consen  153 --SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER  221 (282)
T ss_dssp             --HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence              124567789999999999999999999998853221      1 1123345777788999999888765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.00098  Score=63.44  Aligned_cols=100  Identities=10%  Similarity=-0.022  Sum_probs=69.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ..-|.+..-....+.++-.++++++|++.|..++.++|.+.+     ..-.         .|.-|++-|+.|-|+..|++
T Consensus       284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE-----aiAc---------ia~~yfY~~~PE~AlryYRR  349 (478)
T KOG1129|consen  284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE-----AIAC---------IAVGYFYDNNPEMALRYYRR  349 (478)
T ss_pred             hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce-----eeee---------eeeccccCCChHHHHHHHHH
Confidence            666777776666667777889999999999999999998883     3333         56666666666666666666


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .+.+.-.++|-+.+.++|-..-+++|-+...|+.
T Consensus       350 iLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  350 ILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             HHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            6666666666666666665555566666555553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.0025  Score=58.51  Aligned_cols=84  Identities=11%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC---CcHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN---RFEEGAEQ  194 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG---ryeeAi~~  194 (233)
                      +.=|+|.+||..++.+|+..|+|+.|+=+++..+=++|.++     .++.+         .|-++|-+|   +++-|.+.
T Consensus       148 ~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~-----l~f~r---------lae~~Yt~gg~eN~~~arky  213 (289)
T KOG3060|consen  148 DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP-----LYFQR---------LAEVLYTQGGAENLELARKY  213 (289)
T ss_pred             HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH-----HHHHH---------HHHHHHHHhhHHHHHHHHHH
Confidence            45578888888888888888999999889999988888888     56655         677776664   67778888


Q ss_pred             HHHHHHcCCCCHHHHHHHHHH
Q 026773          195 FRIDVAQNPNDTEESIWCFLC  215 (233)
Q Consensus       195 f~kAL~lnP~d~e~~~~~~l~  215 (233)
                      |.++++++|.+..+++-..+|
T Consensus       214 y~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  214 YERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHhChHhHHHHHHHHHH
Confidence            888999888666544444444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.39  E-value=0.0002  Score=43.86  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.3

Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      .++..+|.++..+|++++|++.|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            356679999999999999999999999999953

...

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00047  Score=65.20  Aligned_cols=88  Identities=11%  Similarity=0.137  Sum_probs=72.4

Q ss_pred             chHHHHHHHHhccc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          105 PSVSGIWDALTGGN-NNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       105 ~~a~~i~~~~i~~~-l~P~-~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      ..|...|+.-+..+ -||+ ++.-|.||+.+.+.+|+|..||.|..+|+.++|.+.     ..+|+         -+.++
T Consensus        98 k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~-----Ka~~R---------~Akc~  163 (390)
T KOG0551|consen   98 KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL-----KAYIR---------GAKCL  163 (390)
T ss_pred             HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh-----hhhhh---------hhHHH
Confidence            35666777766322 4453 778899999999999999999999999999999998     45565         68999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCH
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~  206 (233)
                      +.+.++.+|+.+.+..+.++-+.-
T Consensus       164 ~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  164 LELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHH
Confidence            999999999999999888766543

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.37  E-value=0.0032  Score=66.91  Aligned_cols=118  Identities=13%  Similarity=0.030  Sum_probs=54.9

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCCCCccchhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE----LDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe----LdP~~~~~~~~~y~~~~~~~  172 (233)
                      .+.+.+-..+|..+|+......+.|+ ..+|..+-.++.+.|++++|.+.|++..+    +.|+..       .      
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-------T------  581 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-------T------  581 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-------H------
Confidence            34444444455555555432223343 44555555555666666666666665544    234322       1      


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNP-NDTEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP-~d~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                        |+.+-.++.+.|++++|.+.|++..+.+. .+...+.-...++++.|+.++|...|.
T Consensus       582 --ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~  638 (1060)
T PLN03218        582 --VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD  638 (1060)
T ss_pred             --HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence              11233345555555555555555555432 122222222333445555555555544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0018  Score=63.16  Aligned_cols=114  Identities=14%  Similarity=0.101  Sum_probs=91.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-----------------hh----hhhhh
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-----------------SI----VGIIL  176 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-----------------~~----~~a~~  176 (233)
                      ..-|+|..-...+|.++++.||+.+|+.-|+++.-+||.... |-+.|.+.-                 ++    ..=+.
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~-~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf  304 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE-AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF  304 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh-hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence            456899999999999999999999999999999999997652 111121110                 11    11233


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      --|.+++...+|+.|+..-+++|+.||++.++++..|..+.+.|+.++|.=.|.++
T Consensus       305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A  360 (564)
T KOG1174|consen  305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA  360 (564)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999888764

>PLN03077 Protein ECB2; Provisional

Probab=97.31  E-value=0.0026  Score=64.87  Aligned_cols=117  Identities=14%  Similarity=-0.005  Sum_probs=73.6

Q ss_pred             HHhccCcchHHHHHHHHhc-ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTG-GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~-~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      +.+.+...++..+++.... -.+.|+ .+.|..+..++.+.|++++|.+.+++. .+.|+.       ..|.     +  
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~-------~~~~-----a--  662 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP-------AVWG-----A--  662 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH-------HHHH-----H--
Confidence            3344444444445544431 123332 355666666666666666666666653 344432       2333     1  


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                       +-.++..-|+.+.|....++.++++|+++..+..+...++..|++++|......
T Consensus       663 -Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~  716 (857)
T PLN03077        663 -LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT  716 (857)
T ss_pred             -HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence             222445567788888888888999999998888888889999999999887654

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.30  E-value=0.0042  Score=66.07  Aligned_cols=56  Identities=9%  Similarity=-0.027  Sum_probs=31.5

Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVA--QNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~--lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      |+.+..++...|++++|++.|++..+  +.|+ ...|..+..++++.|++++|...|.+
T Consensus       687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~e  744 (1060)
T PLN03218        687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSE  744 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44555666666666666666666544  2343 22233333455566677777666654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.00084  Score=66.17  Aligned_cols=121  Identities=20%  Similarity=0.143  Sum_probs=95.6

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCC-CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P-~~a~Ay~~RG~a~~~lG--dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      .++-|.+-...|.++..-.-  +.|. .-..|-.++.+.++.+|  ++..|-..-|.|+.+|--++     ...-     
T Consensus       427 ~~~lk~~d~~~aieilkv~~--~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-----~a~~-----  494 (840)
T KOG2003|consen  427 GELLKNGDIEGAIEILKVFE--KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-----AALT-----  494 (840)
T ss_pred             HHHHhccCHHHHHHHHHHHH--hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-----HHhh-----
Confidence            45555555555555654433  2333 33455678888888854  89999999999999998887     3333     


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                          |.|.+-+..|+++.|.+.|..|+.-|..-.++.++.++....+|+.+||+++|++.
T Consensus       495 ----nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl  550 (840)
T KOG2003|consen  495 ----NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL  550 (840)
T ss_pred             ----cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence                59999999999999999999999988888888899999999999999999999874

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.28  E-value=0.0019  Score=58.68  Aligned_cols=85  Identities=11%  Similarity=0.034  Sum_probs=71.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      ..+.-|++-|....+.|++++|+..|++.....|..+      +.-+     +.+..+.++++.++|++|+...++-+++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~------~~~q-----a~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP------YSEQ-----AQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------ccHH-----HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999999999888      3333     5677999999999999999999999999


Q ss_pred             CCCCHHH---HHHHHHHHH
Q 026773          202 NPNDTEE---SIWCFLCEA  217 (233)
Q Consensus       202 nP~d~e~---~~~~~l~~a  217 (233)
                      .|+++..   ++..+++..
T Consensus       101 yP~~~n~dY~~YlkgLs~~  119 (254)
T COG4105         101 YPTHPNADYAYYLKGLSYF  119 (254)
T ss_pred             CCCCCChhHHHHHHHHHHh
Confidence            9987654   334455533

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.26  E-value=0.0014  Score=58.77  Aligned_cols=133  Identities=12%  Similarity=0.065  Sum_probs=85.2

Q ss_pred             cccchhHHHhccCcchHHHHHHHHhcc--c-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhh
Q 026773           91 LQNRAPTFTRRLFIPSVSGIWDALTGG--N-NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYR  166 (233)
Q Consensus        91 ~~~~~~~~~r~~~~~~a~~i~~~~i~~--~-l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~  166 (233)
                      +..+...|...+-++.|...|..+...  + -++ .-+.+|..-|.++.. +++++|+..|++|+++--...     .. 
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-----~~-  110 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-----RF-  110 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT------H-
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-----cH-
Confidence            334555566666667777777776421  1 122 234566666666544 499999999999999843322     00 


Q ss_pred             hhhhhhhhhhhhHHHHHHc-CCcHHHHHHHHHHHHcC--CCCHH----HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          167 FTISIVGIILKKLIRVSHF-NRFEEGAEQFRIDVAQN--PNDTE----ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       167 ~~~~~~~a~~~rG~al~~l-GryeeAi~~f~kAL~ln--P~d~e----~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                        ......+.+.|.++... |++++|++.|.+|+++-  .+.+.    .....+.+..++|++++|...|.++
T Consensus       111 --~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  111 --SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             --HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence              12345677899999998 99999999999999972  22222    1233455677999999999999864

>smart00028 TPR Tetratricopeptide repeats

Probab=97.25  E-value=0.00042  Score=38.70  Aligned_cols=32  Identities=13%  Similarity=0.253  Sum_probs=29.0

Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      ++.++|.++..+|++++|+..|+++++++|++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            45679999999999999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.0029  Score=60.52  Aligned_cols=117  Identities=13%  Similarity=0.092  Sum_probs=97.9

Q ss_pred             cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       102 ~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-dP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      +-.++|...|++++  +--|.+--++..--.+++..|+.++-...++|.|-. ||+.|     -|.+..   |   ..+.
T Consensus       117 g~~h~a~~~wdklL--~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp-----~~sYv~---G---myaF  183 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLL--DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP-----CYSYVH---G---MYAF  183 (491)
T ss_pred             ccccHHHHHHHHHH--HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-----HHHHHH---H---HHHh
Confidence            35577888999999  888999999999999999999999999999999988 99887     454430   0   1345


Q ss_pred             HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      -+...|-|++|.+..++++++||.|..+..-...++..-|+.+|+.+-+.+
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            577889999999999999999999987766666667788999999887765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.0019  Score=60.98  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=93.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh------------h----------------
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------------I----------------  169 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------------~----------------  169 (233)
                      +-+|++-.++..+|.+|++..+|++|-.+|++--.+-|...     .|...            +                
T Consensus        38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-----qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~  112 (459)
T KOG4340|consen   38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-----QYRLYQAQSLYKACIYADALRVAFLLLDNPALHS  112 (459)
T ss_pred             hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-----HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHH
Confidence            68899999999999999999999999999999999999865     22211            0                


Q ss_pred             -----------------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773          170 -----------------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY  220 (233)
Q Consensus       170 -----------------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg  220 (233)
                                                   +-.+.+++.|-++++.|+||+|++-|..|++..--++-..++.++|..+.+
T Consensus       113 ~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~  192 (459)
T KOG4340|consen  113 RVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR  192 (459)
T ss_pred             HHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh
Confidence                                         016778899999999999999999999999998888877788889999999


Q ss_pred             CHHHHHHHHHh
Q 026773          221 GVDEARNRFLE  231 (233)
Q Consensus       221 ~~dEA~~~~l~  231 (233)
                      +++.|.+...|
T Consensus       193 qyasALk~iSE  203 (459)
T KOG4340|consen  193 QYASALKHISE  203 (459)
T ss_pred             hHHHHHHHHHH
Confidence            99999987654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.18  E-value=0.0014  Score=59.83  Aligned_cols=88  Identities=14%  Similarity=0.167  Sum_probs=66.1

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~  183 (233)
                      ..+|--+|+++.  +.-|.++..+..++.++..+|+|++|.+...+|++.||+++     ..         +.|+..+..
T Consensus       183 ~~~A~y~f~El~--~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~-----d~---------LaNliv~~~  246 (290)
T PF04733_consen  183 YQDAFYIFEELS--DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP-----DT---------LANLIVCSL  246 (290)
T ss_dssp             CCHHHHHHHHHH--CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH-----HH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH-----HH---------HHHHHHHHH
Confidence            344555555554  45578899999999999999999999999999999999988     33         346999999


Q ss_pred             HcCCc-HHHHHHHHHHHHcCCCCHH
Q 026773          184 HFNRF-EEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       184 ~lGry-eeAi~~f~kAL~lnP~d~e  207 (233)
                      .+|+. +++-+...+.-..+|+++.
T Consensus       247 ~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  247 HLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HhCCChhHHHHHHHHHHHhCCCChH
Confidence            99999 5555667777778999874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03077 Protein ECB2; Provisional

Probab=97.17  E-value=0.0062  Score=62.17  Aligned_cols=115  Identities=15%  Similarity=0.074  Sum_probs=85.0

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCCccchhhhhhhhh
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe--LdP~~~~~~~~~y~~~~~~~  172 (233)
                      +..+.|.+-..+|..+++..      +.|..+|..+...+...|+.++|++.|++.++  +.|+..      .+..    
T Consensus       531 i~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~------T~~~----  594 (857)
T PLN03077        531 LDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV------TFIS----  594 (857)
T ss_pred             HHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc------cHHH----
Confidence            35566666666666666543      57889999999999999999999999999887  467655      2222    


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQ---NPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~l---nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                           .-.++.+.|+.++|.+.|+...+.   .|+ .+.+....-++++.|+.+||.+.+.+
T Consensus       595 -----ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        595 -----LLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             -----HHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                 445677889999999999988744   443 34444455677788999999888765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.0029  Score=63.42  Aligned_cols=108  Identities=11%  Similarity=0.033  Sum_probs=80.1

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~  183 (233)
                      ..+|....++++  ...|++..+..-.=.++.++++|++|+.+.++-..++-.+.      +++         .++.+.|
T Consensus        28 ~e~a~k~~~Kil--~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~------~~f---------EKAYc~Y   90 (652)
T KOG2376|consen   28 YEEAVKTANKIL--SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS------FFF---------EKAYCEY   90 (652)
T ss_pred             HHHHHHHHHHHH--hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch------hhH---------HHHHHHH
Confidence            356777778888  67799999999999999999999999944443333232222      223         3889999


Q ss_pred             HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ++++.++|+++++   -+++.+.-....++-...++|+++||.+.++.
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~  135 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQH  135 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999998   45666555556667777888999999888764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.13  E-value=0.0072  Score=63.38  Aligned_cols=120  Identities=11%  Similarity=0.104  Sum_probs=85.8

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh------
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------  168 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------  168 (233)
                      +..+.+-+...++.++|++++  ++||+|+.+..+.|..+... |.++|+..+.+|++..=+.-.-.+-.-+|.      
T Consensus       123 A~~Ydk~g~~~ka~~~yer~L--~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~  199 (906)
T PRK14720        123 AEAYAKLNENKKLKGVWERLV--KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYN  199 (906)
T ss_pred             HHHHHHcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcC
Confidence            455666677788999999999  99999999999999999999 999999999999876321110000011222      


Q ss_pred             ---------h-----------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773          169 ---------I-----------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  217 (233)
Q Consensus       169 ---------~-----------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a  217 (233)
                               +           .+++-+...=.-|-..++|++++..+..+++++|.|-.+..-...|+.
T Consensus       200 ~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        200 SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence                     0           112233333366778899999999999999999998766555555544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.0046  Score=56.99  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCCCCccchhhhhh-hhhhhhhhhHHHHHHcCCcHHHHH
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKISGKGAYRFTI-SIVGIILKKLIRVSHFNRFEEGAE  193 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL--------dP~~~~~~~~~y~~~~-~~~~a~~~rG~al~~lGryeeAi~  193 (233)
                      ...+...+|+-++.+|+|.||+..|..||..        .|..+     ...-.+ -+.--++|....+...|+|-|+++
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-----eW~eLdk~~tpLllNy~QC~L~~~e~yevle  251 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-----EWLELDKMITPLLLNYCQCLLKKEEYYEVLE  251 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh-----HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence            4578899999999999999999999999864        57766     211111 223456678888999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ..+..++.+|.+..+++-++-+.+..=+.+||.+.|..|
T Consensus       252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v  290 (329)
T KOG0545|consen  252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV  290 (329)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            999999999999888888877777777888888888764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.06  E-value=0.0011  Score=39.83  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~  157 (233)
                      +|++++|.++..+|++++|++.|++.++..|+.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999974

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.00  E-value=0.0034  Score=60.18  Aligned_cols=79  Identities=11%  Similarity=0.101  Sum_probs=68.1

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      .+|..+..+++  +.+|++++.+...+..+...|+++.|++...+|+++.|...     ..|.         .++.+|..
T Consensus       217 ~~AI~ll~~aL--~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f-----~~W~---------~La~~Yi~  280 (395)
T PF09295_consen  217 VEAIRLLNEAL--KENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF-----ETWY---------QLAECYIQ  280 (395)
T ss_pred             HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH-----HHHH---------HHHHHHHh
Confidence            35556666666  88999999999999999999999999999999999999988     3444         49999999


Q ss_pred             cCCcHHHHHHHHHHH
Q 026773          185 FNRFEEGAEQFRIDV  199 (233)
Q Consensus       185 lGryeeAi~~f~kAL  199 (233)
                      +|++++|+...+-+-
T Consensus       281 ~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  281 LGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHhcCc
Confidence            999999998887543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.97  E-value=0.011  Score=59.89  Aligned_cols=118  Identities=8%  Similarity=-0.019  Sum_probs=81.1

Q ss_pred             chHHHHHHHHhcccCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          105 PSVSGIWDALTGGNNNSR-E----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~-~----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      ..+......++  +..|. +    ..++..+|.++...|++++|...+++++++.....     ....   .+.+..++|
T Consensus       469 ~~A~~~~~~al--~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-----~~~~---~~~~~~~la  538 (903)
T PRK04841        469 EEAERLAELAL--AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-----VYHY---ALWSLLQQS  538 (903)
T ss_pred             HHHHHHHHHHH--hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-----chHH---HHHHHHHHH
Confidence            44555555555  32222 2    24678899999999999999999999999866543     1111   123456789


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCC-----CH-H--HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPN-----DT-E--ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~-----d~-e--~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+++..|++++|.+.+++++++-..     .+ .  .+...+.+....|++++|...+.++
T Consensus       539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  599 (903)
T PRK04841        539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG  599 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            9999999999999999999886321     11 1  1223445566779999998877653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.0067  Score=56.45  Aligned_cols=142  Identities=15%  Similarity=0.156  Sum_probs=102.0

Q ss_pred             ccccccccccccccchhHHHhcc----CcchHHHHHHH----------------------------HhcccCC-CCCHHH
Q 026773           80 NSLFSTPRGHYLQNRAPTFTRRL----FIPSVSGIWDA----------------------------LTGGNNN-SREAVV  126 (233)
Q Consensus        80 n~~~~~~~~h~~~~~~~~~~r~~----~~~~a~~i~~~----------------------------~i~~~l~-P~~a~A  126 (233)
                      ||--+..|+|.+++.+...-+..    ..++....|.+                            ++  +.+ |.++.-
T Consensus       137 npqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi--~~~~e~~p~L  214 (366)
T KOG2796|consen  137 NPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVI--KYYPEQEPQL  214 (366)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHH--HhCCcccHHH
Confidence            44445567777776665443332    33455677776                            23  334 788888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~  206 (233)
                      ...+|.+..+.||.+.|-..|++.-+-+-.-.     ....   ......+...++.-.++|.+|...|++.++.||.++
T Consensus       215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~-----~~q~---~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~  286 (366)
T KOG2796|consen  215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD-----GLQG---KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA  286 (366)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh-----ccch---hHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence            88999999999999999999995543222111     0000   012334678888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          207 EESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       207 e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .+..+.++|+..+|+..+|...++.
T Consensus       287 ~a~NnKALcllYlg~l~DAiK~~e~  311 (366)
T KOG2796|consen  287 VANNNKALCLLYLGKLKDALKQLEA  311 (366)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHH
Confidence            8878889999999999999988764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.89  E-value=0.0017  Score=41.19  Aligned_cols=30  Identities=20%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026773          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (233)
Q Consensus       126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP  155 (233)
                      +|.++|.++..+|+|++|++.|++|+++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            588999999999999999999999776543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.74  E-value=0.023  Score=58.21  Aligned_cols=97  Identities=14%  Similarity=0.042  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      ...+|+.-....-.+|+.++|+...+.+|+.-|++.     ..+.         .+|.++-.+++.+.|.+.|...++.-
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~-----Kl~l---------mlGQi~e~~~~ie~aR~aY~~G~k~c  715 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH-----KLWL---------MLGQIEEQMENIEMAREAYLQGTKKC  715 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH-----HHHH---------HHhHHHHHHHHHHHHHHHHHhccccC
Confidence            345566666666677888888888888888888777     3333         48888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773          203 PNDTEESIWCFLCEAQLYGVDEARNRFLEAR  233 (233)
Q Consensus       203 P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~  233 (233)
                      |+-+.-|+.+.-.+.+.|+.-.|+..+..+|
T Consensus       716 P~~ipLWllLakleEk~~~~~rAR~ildrar  746 (913)
T KOG0495|consen  716 PNSIPLWLLLAKLEEKDGQLVRARSILDRAR  746 (913)
T ss_pred             CCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            8877655555555667778888888777654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.65  E-value=0.015  Score=51.91  Aligned_cols=99  Identities=13%  Similarity=0.056  Sum_probs=79.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      +..|...+ .+.+|.++..+|++.||...|++|+.= -.+++     ..         ++.++.+.+.++++.+|...++
T Consensus        84 ~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~-----a~---------lLglA~Aqfa~~~~A~a~~tLe  148 (251)
T COG4700          84 AIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDA-----AM---------LLGLAQAQFAIQEFAAAQQTLE  148 (251)
T ss_pred             hhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH-----HH---------HHHHHHHHHhhccHHHHHHHHH
Confidence            45676655 468999999999999999999999862 22222     22         3468999999999999999999


Q ss_pred             HHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          197 IDVAQNPN--DTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       197 kAL~lnP~--d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +..+-+|.  .|+..+..+.+++.+|++++|...|+-
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~  185 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV  185 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH
Confidence            99999995  355567777889999999999888764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.64  E-value=0.0024  Score=38.27  Aligned_cols=32  Identities=13%  Similarity=0.259  Sum_probs=29.2

Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      ++++.|.++..+|++++|++.|++.++.-|+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56679999999999999999999999999873

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.62  E-value=0.011  Score=47.21  Aligned_cols=64  Identities=16%  Similarity=0.102  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      ...+...++..+...|++++|+...++++++||.+-     ..+.         .+-.++..+|+..+|++.|++..+
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E-----~~~~---------~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDE-----EAYR---------LLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H-----HHHH---------HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH-----HHHH---------HHHHHHHHCcCHHHHHHHHHHHHH
Confidence            356777888889999999999999999999999876     3333         378899999999999999988643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.58  E-value=0.028  Score=57.54  Aligned_cols=113  Identities=5%  Similarity=-0.050  Sum_probs=94.2

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      ...+|..+...++  +.-|+....|..+|.++-++++.+.|-+.|..-++.-|+..     +. |.        .+..+-
T Consensus       666 ~~eeA~rllEe~l--k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-----pL-Wl--------lLakle  729 (913)
T KOG0495|consen  666 NVEEALRLLEEAL--KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-----PL-WL--------LLAKLE  729 (913)
T ss_pred             hHHHHHHHHHHHH--HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-----hH-HH--------HHHHHH
Confidence            4455666666666  88899999999999999999999999999999999999988     44 43        377777


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      -..|..-.|...++++.-.||.++..|+-.-..+.+.|..+.|...+-+
T Consensus       730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmak  778 (913)
T KOG0495|consen  730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAK  778 (913)
T ss_pred             HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7888999999999999999999997544444556689999999877654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.0061  Score=56.20  Aligned_cols=135  Identities=13%  Similarity=0.103  Sum_probs=98.3

Q ss_pred             CCchhhhHHhhhhccCCcc--h----hhccccccccccccccccchhHHHhccCcchHHHHHHHHhc------ccCCCCC
Q 026773           56 NPPLYSFHRSLLTSKAPLS--V----QTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTG------GNNNSRE  123 (233)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~--~----~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~------~~l~P~~  123 (233)
                      ||--.-||=-||.--+|-.  +    -+.+....+.+-+|.-+|.   +=+.+-..+|+..|..+++      ++..|.+
T Consensus       143 nPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~---lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e  219 (329)
T KOG0545|consen  143 NPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNR---LFKLGRYKEASSKYREAIICLRNLQLKEKPGE  219 (329)
T ss_pred             CCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhh---hhhhccHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            7766678888887777721  1    2334455555666655544   3444433456666655542      2455655


Q ss_pred             H----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHH
Q 026773          124 A----------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAE  193 (233)
Q Consensus       124 a----------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~  193 (233)
                      +          ..+.|...++...|+|-++++.....+..+|++.     .+++.         ||.++...=+-+||.+
T Consensus       220 ~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv-----KA~fr---------RakAhaa~Wn~~eA~~  285 (329)
T KOG0545|consen  220 PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV-----KAYFR---------RAKAHAAVWNEAEAKA  285 (329)
T ss_pred             hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH-----HHHHH---------HHHHHHhhcCHHHHHH
Confidence            4          4678889999999999999999999999999998     44454         9999999999999999


Q ss_pred             HHHHHHHcCCCCHH
Q 026773          194 QFRIDVAQNPNDTE  207 (233)
Q Consensus       194 ~f~kAL~lnP~d~e  207 (233)
                      ||.++++++|.-..
T Consensus       286 D~~~vL~ldpslas  299 (329)
T KOG0545|consen  286 DLQKVLELDPSLAS  299 (329)
T ss_pred             HHHHHHhcChhhHH
Confidence            99999999997554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.056  Score=50.44  Aligned_cols=95  Identities=15%  Similarity=0.104  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH------
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR------  196 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~------  196 (233)
                      ..+.-..-|......|++.+|...|+.+++.+|++.     ...         +.++.++...|+.|+|.+.++      
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~-----~~~---------~~la~~~l~~g~~e~A~~iL~~lP~~~  198 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS-----EAK---------LLLAECLLAAGDVEAAQAILAALPLQA  198 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc-----hHH---------HHHHHHHHHcCChHHHHHHHHhCcccc
Confidence            334445556666677777777777777777777665     222         225556666666655554443      


Q ss_pred             ----------------------------HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          197 ----------------------------IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       197 ----------------------------kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                                                  +.+..||+|.+..+-.+..+...|++++|.+.++.
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~  261 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA  261 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                                        34556899999888888888899999999998764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.41  E-value=0.032  Score=56.54  Aligned_cols=100  Identities=9%  Similarity=-0.148  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      ..+...+|.++...|++++|...+++|++..|...     ...    ...+...+|.++...|++++|...++++++...
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~----~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~  522 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTW-----YYS----RIVATSVLGEVHHCKGELARALAMMQQTEQMAR  522 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----HHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            45666788999999999999999999999766543     110    122345689999999999999999999997644


Q ss_pred             C--C--HH--HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 N--D--TE--ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~--d--~e--~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .  +  ..  ...+.+.+...+|++++|...+.++
T Consensus       523 ~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  557 (903)
T PRK04841        523 QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA  557 (903)
T ss_pred             hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            2  1  11  2233455566899999999887653

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.35  E-value=0.05  Score=52.40  Aligned_cols=81  Identities=15%  Similarity=0.037  Sum_probs=56.1

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773          137 QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  216 (233)
Q Consensus       137 lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~  216 (233)
                      -||++.=++..++.++..|+++     ..+.         -+|..+++.+.|.+|-+.|+.|++..|+.. .+.+.+-++
T Consensus       307 ~~d~~~l~k~~e~~l~~h~~~p-----~L~~---------tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~  371 (400)
T COG3071         307 PGDPEPLIKAAEKWLKQHPEDP-----LLLS---------TLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADAL  371 (400)
T ss_pred             CCCchHHHHHHHHHHHhCCCCh-----hHHH---------HHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHH
Confidence            3444444444555555555555     2333         488888888888888888888888888644 467788888


Q ss_pred             HHcCCHHHHHHHHHhh
Q 026773          217 AQLYGVDEARNRFLEA  232 (233)
Q Consensus       217 a~Lg~~dEA~~~~l~~  232 (233)
                      .++|+.++|.+.+.++
T Consensus       372 ~~~g~~~~A~~~r~e~  387 (400)
T COG3071         372 DQLGEPEEAEQVRREA  387 (400)
T ss_pred             HHcCChHHHHHHHHHH
Confidence            8888888888877653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.34  E-value=0.0047  Score=39.14  Aligned_cols=29  Identities=10%  Similarity=0.037  Sum_probs=23.8

Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      ++.++|.++..+|+|++|++.|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            35679999999999999999999966543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.28  E-value=0.0027  Score=62.03  Aligned_cols=100  Identities=10%  Similarity=-0.043  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH----
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV----  199 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL----  199 (233)
                      ..+|.++|..|+.+|||+.||..-+.-++|.-.+..    .....    .|+-|+|.++..+|+++.|++.|.+.+    
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD----rAaeR----RA~sNlgN~hiflg~fe~A~ehYK~tl~LAi  266 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD----RAAER----RAHSNLGNCHIFLGNFELAIEHYKLTLNLAI  266 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh----HHHHH----HhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence            468999999999999999999999999999887762    22222    467789999999999999999998754    


Q ss_pred             HcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          200 AQNPNDT--EESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       200 ~lnP~d~--e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ++.....  +..+-++.++..+..++.|+.++++
T Consensus       267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r  300 (639)
T KOG1130|consen  267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR  300 (639)
T ss_pred             HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            4444333  3345566667777788888887653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.25  E-value=0.017  Score=40.53  Aligned_cols=40  Identities=13%  Similarity=0.098  Sum_probs=32.5

Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  216 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~  216 (233)
                      .+++.++.+|+|++|.+..+.+++++|+|.++......+.
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            4899999999999999999999999999998765554443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.23  E-value=0.029  Score=58.60  Aligned_cols=101  Identities=10%  Similarity=0.090  Sum_probs=83.8

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN  186 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG  186 (233)
                      |..-.+++.  +.-||..-|-...|..++++|+.++|....+.--.+.|++.     ...-.         .-.+|..+|
T Consensus        28 al~~~~kll--kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~-----~tLq~---------l~~~y~d~~   91 (932)
T KOG2053|consen   28 ALAKLGKLL--KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD-----LTLQF---------LQNVYRDLG   91 (932)
T ss_pred             HHHHHHHHH--HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch-----HHHHH---------HHHHHHHHh
Confidence            455555556  78899999999999999999999999988887777777754     33333         788999999


Q ss_pred             CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 026773          187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE  224 (233)
Q Consensus       187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dE  224 (233)
                      ++++|+..|++++..+|+ -+..+..+.|..+-+.+.+
T Consensus        92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 7777888889888777654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.16  E-value=0.039  Score=55.57  Aligned_cols=88  Identities=10%  Similarity=0.063  Sum_probs=66.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc------
Q 026773          128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ------  201 (233)
Q Consensus       128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l------  201 (233)
                      +.++++.+++++.++|+.+++   -+|+...     ...-         -++.++|.+|+|++|++.|+..++-      
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~-----~ll~---------L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDD-----KLLE---------LRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccch-----HHHH---------HHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            689999999999999999999   4555444     2222         3899999999999999999874332      


Q ss_pred             ---------------------C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 ---------------------N---PN-DTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 ---------------------n---P~-d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                                           .   |+ ..+.+++.+..+...|++.+|.+.++++
T Consensus       146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA  201 (652)
T KOG2376|consen  146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA  201 (652)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence                                 2   33 2333455566678999999999998876

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.012  Score=56.77  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773          136 RQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC  215 (233)
Q Consensus       136 ~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~  215 (233)
                      ...||++||...+-+..++-+.-   ++--.|          .|..++++|+|++|++.|+-+.+-+.-+.+.+.+++.|
T Consensus        34 s~rDytGAislLefk~~~~~EEE---~~~~lW----------ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc  100 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEE---DSLQLW----------IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACC  100 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhh---HHHHHH----------HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHH
Confidence            34699999999998887765443   112445          59999999999999999999988776677777888889


Q ss_pred             HHHcCCHHHHHHHHHh
Q 026773          216 EAQLYGVDEARNRFLE  231 (233)
Q Consensus       216 ~a~Lg~~dEA~~~~l~  231 (233)
                      .-.+|.+.||.....+
T Consensus       101 ~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen  101 KFYLGQYIEAKSIAEK  116 (557)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.11  E-value=0.05  Score=49.07  Aligned_cols=110  Identities=12%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR  181 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~-lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a  181 (233)
                      -...+..++..+.  +..+-...+|...+..-+. .+|.+.|...|+++++.-|++.     .+++.         -..-
T Consensus        16 g~~~aR~vF~~a~--~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~-----~~~~~---------Y~~~   79 (280)
T PF05843_consen   16 GIEAARKVFKRAR--KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP-----DFWLE---------YLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHH--CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-----HHHHH---------HHHH
T ss_pred             ChHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-----HHHHH---------HHHH
Confidence            5666777888887  5566678888888888676 5666669999999999988887     34333         3455


Q ss_pred             HHHcCCcHHHHHHHHHHHHcCCCCH-HHHHHHHHH--HHHcCCHHHHHHH
Q 026773          182 VSHFNRFEEGAEQFRIDVAQNPNDT-EESIWCFLC--EAQLYGVDEARNR  228 (233)
Q Consensus       182 l~~lGryeeAi~~f~kAL~lnP~d~-e~~~~~~l~--~a~Lg~~dEA~~~  228 (233)
                      +..+|+.+.|...|++++..-|.+. ...+|....  +.+-|+.+.....
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v  129 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKV  129 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6678899999999999998877665 445776544  3356766655544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.05  E-value=0.016  Score=36.06  Aligned_cols=31  Identities=16%  Similarity=0.125  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD  154 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd  154 (233)
                      +.++.++|.++..+|++++|+..+++|+++-
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4678999999999999999999999999875

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.057  Score=49.61  Aligned_cols=68  Identities=13%  Similarity=0.215  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773          128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e  207 (233)
                      .+.=.++.+.++++.|...-++.+.++|+++      +-+.        .||.+|..+|-+.-|+++++..++.-|+++.
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp------~eir--------DrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDP------YEIR--------DRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCCh------hhcc--------CcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            3444567788999999999999999999998      5555        6999999999999999999999999999987


Q ss_pred             HH
Q 026773          208 ES  209 (233)
Q Consensus       208 ~~  209 (233)
                      +-
T Consensus       251 a~  252 (269)
T COG2912         251 AE  252 (269)
T ss_pred             HH
Confidence            53

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.82  E-value=0.024  Score=53.94  Aligned_cols=72  Identities=13%  Similarity=0.185  Sum_probs=61.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773          128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e  207 (233)
                      .+.+.-..+.|+.|+|...|+.|+.++|+++     ..         +...|...-+-++.-+|-.+|-+|+.++|.+.+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p-----~~---------L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNP-----QI---------LIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCH-----HH---------HHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            3444445678999999999999999999999     33         345899999999999999999999999999999


Q ss_pred             HHHHHH
Q 026773          208 ESIWCF  213 (233)
Q Consensus       208 ~~~~~~  213 (233)
                      +..++.
T Consensus       186 ALvnR~  191 (472)
T KOG3824|consen  186 ALVNRA  191 (472)
T ss_pred             HHhhhh
Confidence            887774

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.75  E-value=0.012  Score=53.81  Aligned_cols=63  Identities=21%  Similarity=0.305  Sum_probs=54.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          132 MLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       132 ~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                      ..+...||.+.|.+.|++|+++-|+..     .-|++         .|...-+.|+++.|.+.|++.+++||.|-..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~-----~gwfR---------~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWA-----AGWFR---------LGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhh-----hhhhh---------cchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence            356778999999999999999999887     34444         9999999999999999999999999987643

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.74  E-value=0.015  Score=36.19  Aligned_cols=30  Identities=13%  Similarity=0.079  Sum_probs=26.2

Q ss_pred             hhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      +.+++++|.++..+|++++|++.+++++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356788999999999999999999999886

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.68  E-value=0.048  Score=52.52  Aligned_cols=69  Identities=13%  Similarity=0.175  Sum_probs=62.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      +..|++|..+..+|+.+++.+.+.+|-..|+.||...|...     .+.          .+|.++-.+|+.++|-++++.
T Consensus       322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-----~~~----------~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-----DYA----------ELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-----hHH----------HHHHHHHHcCChHHHHHHHHH
Confidence            67899999999999999999999999999999999999876     333          479999999999999999999


Q ss_pred             HHHc
Q 026773          198 DVAQ  201 (233)
Q Consensus       198 AL~l  201 (233)
                      ++.+
T Consensus       387 ~L~~  390 (400)
T COG3071         387 ALLL  390 (400)
T ss_pred             HHHH
Confidence            8853

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.58  E-value=0.15  Score=43.37  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      ..++..+|.-+.+.||.++|++.|.++.+-.....           .+++++++.=.+....|++....+..+++-.+-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~-----------~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG-----------HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH-----------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            57889999999999999999999999777543222           3567888899999999999999998888766533


Q ss_pred             --CCHHH----HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 --NDTEE----SIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 --~d~e~----~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                        .|.+.    ..+.|+.....+++.+|-..|+++
T Consensus       105 ~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  105 KGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence              23322    233456667889999999999864

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.54  E-value=0.031  Score=39.23  Aligned_cols=34  Identities=12%  Similarity=0.198  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      +-++.++..++++|+|++|....+++++++|++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            3467899999999999999999999999999987

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.53  E-value=0.03  Score=56.26  Aligned_cols=99  Identities=13%  Similarity=0.129  Sum_probs=75.7

Q ss_pred             HHHHHHHhcccCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          108 SGIWDALTGGNNNSREAVVAIRRGMLLFR---QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       108 ~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~---lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      ...|..++  +.-|....-|.+|+.++++   .||.-.|+.|...|+++||-..     ..++.         +..++..
T Consensus       394 i~~~s~a~--q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~-----kah~~---------la~aL~e  457 (758)
T KOG1310|consen  394 ISHYSRAI--QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ-----KAHFR---------LARALNE  457 (758)
T ss_pred             HHHHHHHh--hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH-----HHHHH---------HHHHHHH
Confidence            33444444  6678889999999888875   5799999999999999999877     44444         7999999


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEA  225 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA  225 (233)
                      ++++.||+++...+....|.|..   ....|++--.+..+|
T Consensus       458 l~r~~eal~~~~alq~~~Ptd~a---~~~~v~~l~rDi~aa  495 (758)
T KOG1310|consen  458 LTRYLEALSCHWALQMSFPTDVA---RQNFVLCLPRDISAA  495 (758)
T ss_pred             HhhHHHhhhhHHHHhhcCchhhh---hhhhhhccccchHHH
Confidence            99999999999988888886553   344555544455554

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.16  Score=51.33  Aligned_cols=92  Identities=11%  Similarity=-0.022  Sum_probs=58.6

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRR--GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~R--G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      +.+++-..++..++|++++.+...  ...+...++...|+...+.++..||++.     +.+.         ++|.++..
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~---------~L~~ale~  113 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC-----PAVQ---------NLAAALEL  113 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc-----hHHH---------HHHHHHHH
Confidence            444555555556777777664333  6666667777777777777777777776     3333         36777666


Q ss_pred             cCCcHHHHHHHHH-HHHcCCCCHHHHHHH
Q 026773          185 FNRFEEGAEQFRI-DVAQNPNDTEESIWC  212 (233)
Q Consensus       185 lGryeeAi~~f~k-AL~lnP~d~e~~~~~  212 (233)
                      .|....++.++.. +.+..|++.+....+
T Consensus       114 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914         114 DGLQFLALADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             hhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence            7766666666665 777777776654444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.47  E-value=0.058  Score=44.93  Aligned_cols=69  Identities=14%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF  195 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-------dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f  195 (233)
                      |+-.|..+.-++..+|+|++++..-++|+..       +-+..      -.|    |-+..+|+.++-.+|+.+||+..|
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG------klW----IaaVfsra~Al~~~Gr~~eA~~~f  123 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG------KLW----IAAVFSRAVALEGLGRKEEALKEF  123 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH------HHH----HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc------hhH----HHHHHHHHHHHHhcCChHHHHHHH
Confidence            4566777888999999999999998888853       33222      223    456788999999999999999999


Q ss_pred             HHHHHc
Q 026773          196 RIDVAQ  201 (233)
Q Consensus       196 ~kAL~l  201 (233)
                      +++-+.
T Consensus       124 r~agEM  129 (144)
T PF12968_consen  124 RMAGEM  129 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.34  E-value=0.019  Score=57.12  Aligned_cols=88  Identities=20%  Similarity=0.184  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCCCCccchhhh---hhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIE-----LDPRQKISGKGAYRF---TISIVGIILKKLIRVSHFNRFEEGAEQF  195 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-----LdP~~~~~~~~~y~~---~~~~~~a~~~rG~al~~lGryeeAi~~f  195 (233)
                      -..|.++|.++++.|.|.-++..|.||++     |.-+..    ..-..   ++.-..|.+|-|+.+.+.||.-+|.++|
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~----~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf  358 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLK----PAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCF  358 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCC----CCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHH
Confidence            35678999999999999999999999997     111100    01000   1122567889999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHH
Q 026773          196 RIDVAQNPNDTEESIWCFLCEA  217 (233)
Q Consensus       196 ~kAL~lnP~d~e~~~~~~l~~a  217 (233)
                      .+++..--.+|.  +|+.+++|
T Consensus       359 ~~av~vfh~nPr--lWLRlAEc  378 (696)
T KOG2471|consen  359 QKAVHVFHRNPR--LWLRLAEC  378 (696)
T ss_pred             HHHHHHHhcCcH--HHHHHHHH
Confidence            999987666664  66654433

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.24  E-value=0.096  Score=51.45  Aligned_cols=101  Identities=16%  Similarity=0.066  Sum_probs=75.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchh--hhhh-hh-hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAY--RFTI-SI-VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       129 ~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y--~~~~-~~-~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      .=+..++++|+|..|+.-|..|+++-.+-...+|-.+  .-.+ ++ .-|--.+..+|..+++.+-|+..-.++|.+||.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            4456778889999999999999998644322111000  0000 01 122346788999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          205 DTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       205 d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                      ..-.++|.+.|...+.++.||-..+
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987654

>PRK10941 hypothetical protein; Provisional

Probab=95.24  E-value=0.051  Score=49.65  Aligned_cols=61  Identities=10%  Similarity=0.086  Sum_probs=53.1

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      .++.+..-++.|..+-+.++  .++|+++.-+--||.++.++|.+..|+.|++.-|+..|+++
T Consensus       189 ~~~~~~~~~~~AL~~~e~ll--~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp  249 (269)
T PRK10941        189 AALMEEKQMELALRASEALL--QFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP  249 (269)
T ss_pred             HHHHHcCcHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence            34455555667777777777  89999999999999999999999999999999999999998

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.24  E-value=0.79  Score=41.95  Aligned_cols=136  Identities=13%  Similarity=0.144  Sum_probs=92.3

Q ss_pred             cccccccchhHHHhccCcchHHHHHHHHhcccCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccc
Q 026773           87 RGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKG  163 (233)
Q Consensus        87 ~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P---~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~  163 (233)
                      ..+-++.+...+++. -+.+|...+.++.  ...|   -...+-..++.++++.|+|++|+...|+-|++.|+++.   .
T Consensus        34 ~~~LY~~g~~~L~~g-n~~~A~~~fe~l~--~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n---~  107 (254)
T COG4105          34 ASELYNEGLTELQKG-NYEEAIKYFEALD--SRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN---A  107 (254)
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHH--HcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC---h
Confidence            344445554444444 4455777888887  4444   45688999999999999999999999999999999883   1


Q ss_pred             hhhhhh---------------------------------------------------hhhhhhhhhHHHHHHcCCcHHHH
Q 026773          164 AYRFTI---------------------------------------------------SIVGIILKKLIRVSHFNRFEEGA  192 (233)
Q Consensus       164 ~y~~~~---------------------------------------------------~~~~a~~~rG~al~~lGryeeAi  192 (233)
                      +|.+.+                                                   +..+-=+..|.-|.+-|.+..|+
T Consensus       108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~  187 (254)
T COG4105         108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI  187 (254)
T ss_pred             hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            222110                                                   11222235566777778888888


Q ss_pred             HHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 026773          193 EQFRIDVAQNPND---TEESIWCFLCEAQLYGVDEARNR  228 (233)
Q Consensus       193 ~~f~kAL~lnP~d---~e~~~~~~l~~a~Lg~~dEA~~~  228 (233)
                      .-++.+++-=|+-   .+++.++.-++..+|-.++|...
T Consensus       188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            8888888865542   33455666666678877877653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.22  E-value=0.11  Score=50.40  Aligned_cols=119  Identities=16%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-----------Cc--cchhhhhhhh
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI-----------SG--KGAYRFTISI  171 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~-----------~~--~~~y~~~~~~  171 (233)
                      ++|..-|..+.  +.+--+++.+.+++.++|.+|.|.||-..-++|    |+.+.           -+  |....++-+.
T Consensus        74 ~~Al~~Y~~~~--~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~L  147 (557)
T KOG3785|consen   74 EEALNVYTFLM--NKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSL  147 (557)
T ss_pred             HHHHHHHHHHh--ccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34455555555  445556677777777788888887776654443    33221           00  0000000000


Q ss_pred             ---hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          172 ---VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       172 ---~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                         .+=-+.++.+.|+.-.|+||++.|.+.+.-||+....-.+.++|+.++.-++-+.+.+
T Consensus       148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl  208 (557)
T KOG3785|consen  148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVL  208 (557)
T ss_pred             hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence               2223467888899999999999999999999987665677889999998777665543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.21  E-value=0.04  Score=52.32  Aligned_cols=95  Identities=19%  Similarity=0.255  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      ++++...+.|.+.++.|+|++|+.-|+.|++..--++     ...++         .+++++..|+|+.|++.....++.
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-----llAYn---------iALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-----LLAYN---------LALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-----hhHHH---------HHHHHHhhhhHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999988777     34454         899999999999999988776654


Q ss_pred             ----CCC----------------CH---------HHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          202 ----NPN----------------DT---------EESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       202 ----nP~----------------d~---------e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                          .|+                |+         ++....+..+.+.++++.|++.+.
T Consensus       208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                331                22         111222345667888888888764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.20  E-value=0.092  Score=39.86  Aligned_cols=68  Identities=10%  Similarity=0.183  Sum_probs=50.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          132 MLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       132 ~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      .-..+.|||.+|++...+....-.....    ... .....-+.++++.++...|++++|++.+++|+++-..
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~----~~~-~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNN----SSS-NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhccc----chh-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3456889999999999998888665541    110 0011235678999999999999999999999997553

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.18  E-value=0.03  Score=36.94  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP  155 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP  155 (233)
                      +++|..+|-+-...++|++|+.||.+|++|.-
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999853

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.16  E-value=0.19  Score=45.31  Aligned_cols=94  Identities=14%  Similarity=0.095  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc-CCcHHHHHHHHHHHHcCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF-NRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l-GryeeAi~~f~kAL~lnP  203 (233)
                      -+|.......-+.+..++|-..|.+|.+-++-..         .     +|..-+..-+.. ++.+.|.+.|+++++.-|
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~---------~-----vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~   67 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY---------H-----VYVAYALMEYYCNKDPKRARKIFERGLKKFP   67 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T---------H-----HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH---------H-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence            3677888888888889999999999984333222         1     334577776775 444449999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 NDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+.+.|....--+..+++.+.|+..|+.+
T Consensus        68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~   96 (280)
T PF05843_consen   68 SDPDFWLEYLDFLIKLNDINNARALFERA   96 (280)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            98875433333355789999999998864

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.03  E-value=0.16  Score=38.92  Aligned_cols=68  Identities=15%  Similarity=0.094  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHc
Q 026773          142 GSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND--TEESIWCFLCEAQL  219 (233)
Q Consensus       142 eAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d--~e~~~~~~l~~a~L  219 (233)
                      ..++.++++++-||++.     ...+.         ++..+...|++++|++.+-..++.++++  ....--+--++..+
T Consensus         6 ~~~~al~~~~a~~P~D~-----~ar~~---------lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l   71 (90)
T PF14561_consen    6 PDIAALEAALAANPDDL-----DARYA---------LADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL   71 (90)
T ss_dssp             HHHHHHHHHHHHSTT-H-----HHHHH---------HHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCCH-----HHHHH---------HHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence            45788999999999998     45555         9999999999999999999999999876  22222222344455


Q ss_pred             CCHH
Q 026773          220 YGVD  223 (233)
Q Consensus       220 g~~d  223 (233)
                      |.-+
T Consensus        72 g~~~   75 (90)
T PF14561_consen   72 GPGD   75 (90)
T ss_dssp             -TT-
T ss_pred             CCCC
Confidence            5533

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.98  E-value=0.37  Score=41.23  Aligned_cols=85  Identities=11%  Similarity=-0.019  Sum_probs=56.4

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      -..+++.+.+.+.  -+.|+.++.-..-|+.+...|++.+|+..++...+-.|..+.      .--        -++.++
T Consensus        25 ~~~D~e~lL~ALr--vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~------~kA--------LlA~CL   88 (160)
T PF09613_consen   25 DPDDAEALLDALR--VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY------AKA--------LLALCL   88 (160)
T ss_pred             ChHHHHHHHHHHH--HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH------HHH--------HHHHHH
Confidence            3445666666666  678888888888888888888888888888887777777662      111        257777


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCC
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      +.+|+.+ =-..-+.+++-+++
T Consensus        89 ~~~~D~~-Wr~~A~evle~~~d  109 (160)
T PF09613_consen   89 YALGDPS-WRRYADEVLESGAD  109 (160)
T ss_pred             HHcCChH-HHHHHHHHHhcCCC
Confidence            7777654 12223445555553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.96  E-value=0.042  Score=55.17  Aligned_cols=95  Identities=13%  Similarity=0.079  Sum_probs=80.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH---cCCcHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH---FNRFEEGAEQFRI  197 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~---lGryeeAi~~f~k  197 (233)
                      |.+++-+..-|.--++.+...+||.+|.+|++--|...      +.+.        +|+.++.+   -|+.-.|+.|...
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~------~~l~--------nraa~lmkRkW~~d~~~AlrDch~  436 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI------YLLE--------NRAAALMKRKWRGDSYLALRDCHV  436 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh------HHHH--------hHHHHHHhhhccccHHHHHHhHHh
Confidence            56677777788878888899999999999999999776      4444        57666654   4677889999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                      |+++||..-.+++|++-|+.+++++.||+..-
T Consensus       437 Alrln~s~~kah~~la~aL~el~r~~eal~~~  468 (758)
T KOG1310|consen  437 ALRLNPSIQKAHFRLARALNELTRYLEALSCH  468 (758)
T ss_pred             hccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence            99999999999999999999999999998753

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=0.036  Score=51.70  Aligned_cols=71  Identities=17%  Similarity=0.304  Sum_probs=60.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      ++.-++.+...++.-++||.+|...|++.++.||.++     .+.         +++++++.++|+..+|++..+.++++
T Consensus       250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~-----~a~---------NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA-----VAN---------NNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhHHHHhhhhhheecccchHHHHHHHhhccccCCCch-----hhh---------chHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3445566666777778999999999999999999998     343         46999999999999999999999999


Q ss_pred             CCCCH
Q 026773          202 NPNDT  206 (233)
Q Consensus       202 nP~d~  206 (233)
                      .|...
T Consensus       316 ~P~~~  320 (366)
T KOG2796|consen  316 DPRHY  320 (366)
T ss_pred             CCccc
Confidence            99753

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.93  E-value=0.059  Score=52.96  Aligned_cols=96  Identities=8%  Similarity=-0.082  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD----PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd----P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      .-.|+.++|.++..+|+++-|++.|.+++.|.    -+-.     ..       -..+.+|.+|+.+.+++.||..+.+-
T Consensus       234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v-----EA-------QscYSLgNtytll~e~~kAI~Yh~rH  301 (639)
T KOG1130|consen  234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV-----EA-------QSCYSLGNTYTLLKEVQKAITYHQRH  301 (639)
T ss_pred             HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH-----HH-------HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999876554    3222     11       12456999999999999999999987


Q ss_pred             HHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          199 VAQNPN------DTEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       199 L~lnP~------d~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                      +++.-+      ...++.-++.++..+|..+.|....+
T Consensus       302 LaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  302 LAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            766432      22233335677888999888876543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.86  E-value=0.47  Score=39.62  Aligned_cols=103  Identities=14%  Similarity=0.070  Sum_probs=64.0

Q ss_pred             HHHHHHHHH--HHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhh-hhhhhhhHHHHHHcCCcHHHHHHHHHHHH-
Q 026773          125 VVAIRRGML--LFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISI-VGIILKKLIRVSHFNRFEEGAEQFRIDVA-  200 (233)
Q Consensus       125 ~Ay~~RG~a--~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~-~~a~~~rG~al~~lGryeeAi~~f~kAL~-  200 (233)
                      .+|..++..  ...-|-|++|.+.+.+|++..-.-|.   ...+-...+ .=.+..+.-++..+|+|+|++..-+++|. 
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            455555444  45679999999999999998765542   011111000 00122467788899999999988888775 


Q ss_pred             ------cCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHhh
Q 026773          201 ------QNPNDTEESIWC------FLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       201 ------lnP~d~e~~~~~------~l~~a~Lg~~dEA~~~~l~~  232 (233)
                            ++.+  +...|.      +.++..+|+.+||...|..+
T Consensus        85 FNRRGEL~qd--eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a  126 (144)
T PF12968_consen   85 FNRRGELHQD--EGKLWIAAVFSRAVALEGLGRKEEALKEFRMA  126 (144)
T ss_dssp             HHHH--TTST--HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             Hhhccccccc--cchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence                  4444  334454      45667899999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.86  E-value=0.31  Score=37.31  Aligned_cols=41  Identities=12%  Similarity=0.112  Sum_probs=36.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      +.+|+|.++.+.++..+...|++++|++.+-..++.+|++.
T Consensus        16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~   56 (90)
T PF14561_consen   16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE   56 (90)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred             HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence            78999999999999999999999999999999999999875

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.57  E-value=0.053  Score=49.62  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      .+-.+.+.++|++++  ++.|..+..|+..|...-..|+++.|.+.|++.+++||.+-
T Consensus         8 ~~D~~aaaely~qal--~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           8 SGDAEAAAELYNQAL--ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             cCChHHHHHHHHHHh--hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            344577889999999  89999999999999999999999999999999999999875

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.39  Score=46.66  Aligned_cols=99  Identities=15%  Similarity=0.090  Sum_probs=73.1

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD--VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd--yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      .++...+.-..++  +.+|++..+|+.|-.++...+.  +..=++..++++++||++.-    +..+          |=.
T Consensus        90 ~ld~eL~~~~~~L--~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh----~W~Y----------RRf  153 (421)
T KOG0529|consen   90 LLDEELKYVESAL--KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH----AWHY----------RRF  153 (421)
T ss_pred             hhHHHHHHHHHHH--HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc----chHH----------HHH
Confidence            4555555666666  8999999999999999998774  58889999999999999982    2222          344


Q ss_pred             HHHHcCC----cHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773          181 RVSHFNR----FEEGAEQFRIDVAQNPNDTEESIWCFLCEA  217 (233)
Q Consensus       181 al~~lGr----yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a  217 (233)
                      +.-...+    ..+=++..+++|.-|+.|..+|.++...+.
T Consensus       154 V~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  154 VVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            4433333    466677788899999988887777755444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=0.63  Score=43.29  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=79.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-----------Cccch----hh-hh------hhhhhhhhhh
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI-----------SGKGA----YR-FT------ISIVGIILKK  178 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~-----------~~~~~----y~-~~------~~~~~a~~~r  178 (233)
                      -.+-++...--.++.++-+.+-|.....++.++|-+...           .|+..    ++ +.      ..--...+..
T Consensus       134 ~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~  213 (299)
T KOG3081|consen  134 GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQ  213 (299)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccH
Confidence            355566666666777777777777777777777754321           00000    00 00      0013456679


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +.+...+|||+||....+.++..++++++...+.--|-..+|...++..+++.
T Consensus       214 Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  214 AVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            99999999999999999999999999999988888777789988888887764

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.81  E-value=0.6  Score=46.75  Aligned_cols=106  Identities=17%  Similarity=0.101  Sum_probs=80.9

Q ss_pred             HHHHHHHHhcccCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH-
Q 026773          107 VSGIWDALTGGNNNS----REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR-  181 (233)
Q Consensus       107 a~~i~~~~i~~~l~P----~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a-  181 (233)
                      ..++|..++  ++=|    ..+..|...+.-..++.+..+|-...-.||-..|++.      .+           +|-+ 
T Consensus       385 tr~vyq~~l--~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K------lF-----------k~YIe  445 (677)
T KOG1915|consen  385 TRQVYQACL--DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK------LF-----------KGYIE  445 (677)
T ss_pred             HHHHHHHHH--hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh------HH-----------HHHHH
Confidence            445555555  5556    4678888888888999999999999999999999876      22           3433 


Q ss_pred             -HHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          182 -VSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       182 -l~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                       -..+++++.+.+.|++-|+-+|.+-..|.-.+-.+..||+.|.|+..|.-
T Consensus       446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifel  496 (677)
T KOG1915|consen  446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFEL  496 (677)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence             45678999999999999999998765433334445689999999988753

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.55  E-value=1.5  Score=40.51  Aligned_cols=98  Identities=12%  Similarity=0.135  Sum_probs=66.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773          118 NNNSREAVVAIRRGMLLFRQGD------------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF  185 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGd------------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l  185 (233)
                      +.+|.|.++|..+-...-..-.            .+.-+..++|||+.+|++.     .. +.     .|+..|   ...
T Consensus        13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~-----~L-~l-----~~l~~~---~~~   78 (321)
T PF08424_consen   13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE-----RL-LL-----GYLEEG---EKV   78 (321)
T ss_pred             HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH-----HH-HH-----HHHHHH---HHh
Confidence            6788888888887665544322            5678899999999999776     33 22     233333   355


Q ss_pred             CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHh
Q 026773          186 NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-----GVDEARNRFLE  231 (233)
Q Consensus       186 GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg-----~~dEA~~~~l~  231 (233)
                      .+-++..+-+++++..+|++..  +|.......++     .+++-+..|.+
T Consensus        79 ~~~~~l~~~we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~y~~  127 (321)
T PF08424_consen   79 WDSEKLAKKWEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDVYEK  127 (321)
T ss_pred             CCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            6888889999999999999876  66654433333     45566555543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.24  E-value=0.12  Score=34.08  Aligned_cols=30  Identities=10%  Similarity=0.007  Sum_probs=26.9

Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      +++..+|-+-...++|++|+++|.+++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            466779999999999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.72  E-value=0.38  Score=31.16  Aligned_cols=34  Identities=9%  Similarity=0.077  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAE--FDKAIELDPRQ  157 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIad--fdkAIeLdP~~  157 (233)
                      ++.++..|..+..+|++++|+..  |.-+..++|.+
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            36678899999999999999999  44999999864

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.66  E-value=0.96  Score=45.18  Aligned_cols=113  Identities=12%  Similarity=-0.012  Sum_probs=72.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-------Cccchhhhh--h--hhhhhhhhhHHHHHHc
Q 026773          117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI-------SGKGAYRFT--I--SIVGIILKKLIRVSHF  185 (233)
Q Consensus       117 ~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~-------~~~~~y~~~--~--~~~~a~~~rG~al~~l  185 (233)
                      ++++|+.++||..++--.  ..-..||.+.|.||++.....-.       .|.....+.  +  -.+.+-..++.+.-++
T Consensus       195 Lei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarkl  272 (539)
T PF04184_consen  195 LEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKL  272 (539)
T ss_pred             HHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHh
Confidence            389999999998876422  23456777777777766543320       000000000  0  0122334567778899


Q ss_pred             CCcHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          186 NRFEEGAEQFRIDVAQNPNDTE--ESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       186 GryeeAi~~f~kAL~lnP~d~e--~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      |+.+||++.|+..++.+|.+..  .+.++--|+..++++.|+...+.+
T Consensus       273 Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  273 GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            9999999999999998886422  334555677788999998876643

The molecular function of this protein is uncertain.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.59  E-value=0.15  Score=30.13  Aligned_cols=26  Identities=15%  Similarity=0.124  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDK  149 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdk  149 (233)
                      |.+.+.+|.++..+||+++|.+.+++
T Consensus         1 ~~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    1 PRARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            45788999999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.12  E-value=3  Score=35.72  Aligned_cols=84  Identities=15%  Similarity=0.013  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      .++....++-...++.+++...++..--+.|+.+     ..-..         -|..+...|++.+|+..|+...+-.|.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~-----e~~~~---------~~~l~i~r~~w~dA~rlLr~l~~~~~~   76 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP-----ELDLF---------DGWLHIVRGDWDDALRLLRELEERAPG   76 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch-----HHHHH---------HHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence            4566777777888999999999999999999998     34333         799999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCH
Q 026773          205 DTEESIWCFLCEAQLYGV  222 (233)
Q Consensus       205 d~e~~~~~~l~~a~Lg~~  222 (233)
                      .+.......+|+..+|+.
T Consensus        77 ~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   77 FPYAKALLALCLYALGDP   94 (160)
T ss_pred             ChHHHHHHHHHHHHcCCh
Confidence            998888889999988876

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.11  E-value=1.6  Score=40.91  Aligned_cols=86  Identities=13%  Similarity=0.105  Sum_probs=66.4

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------------
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDK---------------------------------  149 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdk---------------------------------  149 (233)
                      -...+..+++.+.  +.+|+++++-..++.++...|+.++|-+.++.                                 
T Consensus       149 ~~~~a~~~~~~al--~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~  226 (304)
T COG3118         149 DFGEAAPLLKQAL--QAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ  226 (304)
T ss_pred             chhhHHHHHHHHH--HhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            3456677777777  88999999999999999999999887766554                                 


Q ss_pred             -HHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          150 -AIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       150 -AIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                       .+.-||++.              ++-+..+..+...||.++|++.+-..++.|-+
T Consensus       227 ~~~aadPdd~--------------~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         227 RRLAADPDDV--------------EAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHHhCCCCH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence             122244444              34446999999999999999999888887654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.02  E-value=0.24  Score=45.58  Aligned_cols=53  Identities=13%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      ++.|...-+.++  .++|+++..+--||.+|.++|.+..|++|++..++.-|+.+
T Consensus       197 ~~~al~~~~r~l--~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         197 WELALRVAERLL--DLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             hHHHHHHHHHHH--hhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence            333444444445  79999999999999999999999999999999999999988

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=91.99  E-value=1.2  Score=37.82  Aligned_cols=78  Identities=9%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh-hCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          123 EAVVAIRRGMLLFRQ---GDVVGSVAEFDKAIE-LDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~l---GdyeeAIadfdkAIe-LdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      ....-+++++++...   .|..+.|..++..++ -.|...    ..+.+.         ++..++++++|+.|+...+..
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r----Re~lyY---------LAvg~yRlkeY~~s~~yvd~l   97 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR----RECLYY---------LAVGHYRLKEYSKSLRYVDAL   97 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc----hhhhhh---------hHHHHHHHhhHHHHHHHHHHH
Confidence            345667777777765   467789999999997 445443    245555         899999999999999999999


Q ss_pred             HHcCCCCHHHHHHHH
Q 026773          199 VAQNPNDTEESIWCF  213 (233)
Q Consensus       199 L~lnP~d~e~~~~~~  213 (233)
                      ++.+|++.++.-...
T Consensus        98 l~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   98 LETEPNNRQALELKE  112 (149)
T ss_pred             HhhCCCcHHHHHHHH
Confidence            999999998754443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.75  E-value=2.1  Score=40.52  Aligned_cols=94  Identities=12%  Similarity=0.185  Sum_probs=72.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCC------CCccchhhhh---h-hhhhhhhhhHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-----LDPRQK------ISGKGAYRFT---I-SIVGIILKKLIRV  182 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-----LdP~~~------~~~~~~y~~~---~-~~~~a~~~rG~al  182 (233)
                      +.+|-+.+++.+++.++.++||++.|-+..+|||=     +.|.+.      ..|++..-+.   | .+.-++......+
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999963     234331      0122221110   1 4466778888999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCC-CHHHHHH
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPN-DTEESIW  211 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~-d~e~~~~  211 (233)
                      .+.|-+..|++...-.+.+||. ||-....
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll  143 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLL  143 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence            9999999999999999999999 8866433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.61  E-value=1.5  Score=42.08  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=64.0

Q ss_pred             CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH---HHcCCcHHHHH
Q 026773          120 NSREAVVAIRRGMLLFR---QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV---SHFNRFEEGAE  193 (233)
Q Consensus       120 ~P~~a~Ay~~RG~a~~~---lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al---~~lGryeeAi~  193 (233)
                      -++...+-...|.++.+   .||.++|+..+..++.-+....     +..+.  +.|.+++.-..-   -.....++|++
T Consensus       175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~-----~d~~g--L~GRIyKD~~~~s~~~d~~~ldkAi~  247 (374)
T PF13281_consen  175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD-----PDTLG--LLGRIYKDLFLESNFTDRESLDKAIE  247 (374)
T ss_pred             hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC-----hHHHH--HHHHHHHHHHHHcCccchHHHHHHHH
Confidence            34577888899999999   9999999999999666554433     23332  222222222221   12335789999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773          194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  226 (233)
Q Consensus       194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~  226 (233)
                      +|.++.+++|+.. .-++...++...|...+..
T Consensus       248 ~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  248 WYRKGFEIEPDYY-SGINAATLLMLAGHDFETS  279 (374)
T ss_pred             HHHHHHcCCcccc-chHHHHHHHHHcCCcccch
Confidence            9999999998643 3355555555555444433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.48  E-value=1.1  Score=39.47  Aligned_cols=75  Identities=13%  Similarity=0.159  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHH
Q 026773          122 REAVVAIRRGMLLFRQGD-------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQ  194 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGd-------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~  194 (233)
                      .-+..+...++++-.+|+       +..|+..|++|++-+..-. .|.       .-..+++-.|....++|++++|+.+
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-~~~-------~~~~l~YLigeL~rrlg~~~eA~~~  187 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI-EGM-------DEATLLYLIGELNRRLGNYDEAKRW  187 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-CCc-------hHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            347788888899999999       4558888888887775411 000       1123455689999999999999999


Q ss_pred             HHHHHHcCCC
Q 026773          195 FRIDVAQNPN  204 (233)
Q Consensus       195 f~kAL~lnP~  204 (233)
                      |.+++...-.
T Consensus       188 fs~vi~~~~~  197 (214)
T PF09986_consen  188 FSRVIGSKKA  197 (214)
T ss_pred             HHHHHcCCCC
Confidence            9999985443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.44  E-value=1.3  Score=44.44  Aligned_cols=49  Identities=12%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~  157 (233)
                      |.++|..++  ..+..+...|...+-.-+.......|-..+|+|+.+=|+.
T Consensus        92 ARSv~ERAL--dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   92 ARSVFERAL--DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHHH--hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            334444444  3444444444444444444444444444444444444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.36  E-value=3.1  Score=39.98  Aligned_cols=64  Identities=11%  Similarity=0.025  Sum_probs=48.4

Q ss_pred             chhHHHh---ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCC
Q 026773           94 RAPTFTR---RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus        94 ~~~~~~r---~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l---------GdyeeAIadfdkAIeLdP~~~  158 (233)
                      .+-+++|   .+--+.|..++..++. ...+.+++.+...|.+|-..         ...++||+.|.|+.+++|+..
T Consensus       185 yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  185 YAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             HHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence            4556777   4455678888877431 57789999999999998432         247889999999999998654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.32  E-value=0.9  Score=44.27  Aligned_cols=81  Identities=14%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHH---HH-H
Q 026773          137 QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEES---IW-C  212 (233)
Q Consensus       137 lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~---~~-~  212 (233)
                      ..+.+.|.+..++..+.-|+.+     -+.+.         .|..+...|+.++|++.|++++.....-++..   +| +
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~-----lfl~~---------~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El  311 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSA-----LFLFF---------EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFEL  311 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcH-----HHHHH---------HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHH
Confidence            4577889999999999999877     34444         89999999999999999999996554433332   23 4


Q ss_pred             HHHHHHcCCHHHHHHHHHh
Q 026773          213 FLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       213 ~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +.|...++++++|...|..
T Consensus       312 ~w~~~~~~~w~~A~~~f~~  330 (468)
T PF10300_consen  312 AWCHMFQHDWEEAAEYFLR  330 (468)
T ss_pred             HHHHHHHchHHHHHHHHHH
Confidence            6788899999999998875

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.17  E-value=3.5  Score=35.16  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=28.5

Q ss_pred             hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      +++.+.+.+-  -+.|+.++.-..-|+.+...|++++|+..++...+-.|..+
T Consensus        28 D~e~lLdALr--vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p   78 (153)
T TIGR02561        28 DAQAMLDALR--VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP   78 (153)
T ss_pred             HHHHHHHHHH--HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence            3344444443  45566666666666666666666666666666555555444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.13  E-value=1  Score=40.08  Aligned_cols=90  Identities=9%  Similarity=0.042  Sum_probs=59.1

Q ss_pred             CcchHHHHHHHHhcccCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR  181 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~-~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a  181 (233)
                      -...|+.....+++...|.+ -+-+-.+++.+++.+|.+++|+...+..-+  +...     +...        --||-+
T Consensus       104 ~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~-----~~~~--------elrGDi  168 (207)
T COG2976         104 NLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWA-----AIVA--------ELRGDI  168 (207)
T ss_pred             cHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHH-----HHHH--------HHhhhH
Confidence            33445555554442211211 234567889999999999999988775322  1111     1111        148999


Q ss_pred             HHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773          182 VSHFNRFEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       182 l~~lGryeeAi~~f~kAL~lnP~d~e  207 (233)
                      +...|+-++|.+.|.++++.+++++.
T Consensus       169 ll~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         169 LLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             HHHcCchHHHHHHHHHHHHccCChHH
Confidence            99999999999999999999876654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.01  E-value=1.1  Score=45.41  Aligned_cols=83  Identities=13%  Similarity=0.019  Sum_probs=69.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDK-AIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdk-AIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      ..||+++.++.++|.+..+.|....++.++.. |.++.|++.     .+...   .-.++..|..+..+|+.+++.....
T Consensus        95 ~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~  166 (620)
T COG3914          95 SVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA-----EFLGH---LIRFYQLGRYLKLLGRTAEAELALE  166 (620)
T ss_pred             hcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH-----HHHhh---HHHHHHHHHHHHHhccHHHHHHHHH
Confidence            78999999999999999999999999888888 999999987     33322   1112225888999999999999999


Q ss_pred             HHHHcCCCCHHH
Q 026773          197 IDVAQNPNDTEE  208 (233)
Q Consensus       197 kAL~lnP~d~e~  208 (233)
                      ++.++.|.+++.
T Consensus       167 ~~~d~~p~~~~~  178 (620)
T COG3914         167 RAVDLLPKYPRV  178 (620)
T ss_pred             HHHHhhhhhhhh
Confidence            999999998764

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=90.85  E-value=1  Score=47.53  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=67.5

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773          137 QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  216 (233)
Q Consensus       137 lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~  216 (233)
                      .+++..|+++.++.++--|+-.      +.        ..-.|.++.++|+++||..+++..-...++|....-..-.|+
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~------~a--------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y   87 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNAL------YA--------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVY   87 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcH------HH--------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHH
Confidence            4689999999999999999887      32        234899999999999999888877777777766555566899


Q ss_pred             HHcCCHHHHHHHHHh
Q 026773          217 AQLYGVDEARNRFLE  231 (233)
Q Consensus       217 a~Lg~~dEA~~~~l~  231 (233)
                      ..+|..|+|...++.
T Consensus        88 ~d~~~~d~~~~~Ye~  102 (932)
T KOG2053|consen   88 RDLGKLDEAVHLYER  102 (932)
T ss_pred             HHHhhhhHHHHHHHH
Confidence            999999999988765

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.76  E-value=5.1  Score=37.54  Aligned_cols=149  Identities=11%  Similarity=0.075  Sum_probs=107.9

Q ss_pred             HhhhhccCCcchhhccccccccccccccccchh---H-HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHH-cC
Q 026773           64 RSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAP---T-FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-QG  138 (233)
Q Consensus        64 ~~~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~---~-~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~-lG  138 (233)
                      |.--.-+.|+.+...-||+-....-..+.+..+   + +.+.-..|.|..+-..+|  .+||.+--+|.-|=.++-. ..
T Consensus        15 ~~dw~Dv~PlpqdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i--~lNpAnYTVW~yRr~iL~~l~~   92 (318)
T KOG0530|consen   15 RYDWSDVTPLPQDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAI--RLNPANYTVWQYRRVILRHLMS   92 (318)
T ss_pred             hcccccCccCCCCCCCCcceEeeechhHHHHHHHHHHHHhccccCHHHHHHHHHHH--HhCcccchHHHHHHHHHHHhHH
Confidence            344456788888888888876666555554422   1 223336778888888888  8999999999888777654 55


Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH-HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773          139 DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE-EGAEQFRIDVAQNPNDTEESIWCFLCEA  217 (233)
Q Consensus       139 dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye-eAi~~f~kAL~lnP~d~e~~~~~~l~~a  217 (233)
                      |..+=++..+..++-+|++.     .. |.        -|-.+.-.+|++. .=++....++..|..+..+|-.+--|..
T Consensus        93 dL~~El~~l~eI~e~npKNY-----Qv-WH--------HRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r  158 (318)
T KOG0530|consen   93 DLNKELEYLDEIIEDNPKNY-----QV-WH--------HRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLR  158 (318)
T ss_pred             HHHHHHHHHHHHHHhCccch-----hH-HH--------HHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHH
Confidence            78888999999999999998     33 43        3778888888888 7788888899988888766655555555


Q ss_pred             HcCCHHHHHHH
Q 026773          218 QLYGVDEARNR  228 (233)
Q Consensus       218 ~Lg~~dEA~~~  228 (233)
                      ..++++.....
T Consensus       159 ~F~~~~~EL~y  169 (318)
T KOG0530|consen  159 FFKDYEDELAY  169 (318)
T ss_pred             HHhhHHHHHHH
Confidence            55666655543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.54  E-value=0.52  Score=30.49  Aligned_cols=31  Identities=6%  Similarity=0.118  Sum_probs=24.9

Q ss_pred             hhhhHHHHHHcCCcHHHHHH--HHHHHHcCCCC
Q 026773          175 ILKKLIRVSHFNRFEEGAEQ--FRIDVAQNPND  205 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~--f~kAL~lnP~d  205 (233)
                      ++..|..++..|++++|++.  |.-+..++|+|
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            44689999999999999999  55888888865

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.21  E-value=1.6  Score=38.93  Aligned_cols=92  Identities=9%  Similarity=-0.035  Sum_probs=64.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773          128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e  207 (233)
                      ..++-.....|++++|+...+.++..--+...   +..        +=.+++.++...|.+++|++.++..-.  ++...
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l---k~l--------~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~  159 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENL---KAL--------AALRLARVQLQQKKADAALKTLDTIKE--ESWAA  159 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHH---HHH--------HHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHH
Confidence            34455667899999999999999876543321   011        123689999999999999999875422  22121


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          208 -ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       208 -~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       ..-.+|-.+..+|+.+||+..+.++
T Consensus       160 ~~~elrGDill~kg~k~~Ar~ay~kA  185 (207)
T COG2976         160 IVAELRGDILLAKGDKQEARAAYEKA  185 (207)
T ss_pred             HHHHHhhhHHHHcCchHHHHHHHHHH
Confidence             1234677888999999999998764

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.86  E-value=0.63  Score=46.74  Aligned_cols=106  Identities=11%  Similarity=0.017  Sum_probs=78.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCCCCcc--chhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKA-IELDPRQKISGK--GAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF  195 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkA-IeLdP~~~~~~~--~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f  195 (233)
                      ..-+.+.+........+..|+|..|++..... |+-.|....-|.  ...+|        +|+|.+++.+|.|..+...|
T Consensus       235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~--------NNlGcIh~~~~~y~~~~~~F  306 (696)
T KOG2471|consen  235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN--------NNLGCIHYQLGCYQASSVLF  306 (696)
T ss_pred             hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee--------cCcceEeeehhhHHHHHHHH
Confidence            34488899999999999999999999887653 222333110000  01234        48999999999999999999


Q ss_pred             HHHHH---------cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          196 RIDVA---------QNP---------NDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       196 ~kAL~---------lnP---------~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+|++         +.|         ..-+..+++|+.+...|++-+|-++|+++
T Consensus       307 ~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  307 LKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             HHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            99996         222         23456688899999999999999999874

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.83  E-value=9.1  Score=34.00  Aligned_cols=119  Identities=11%  Similarity=0.015  Sum_probs=79.5

Q ss_pred             hHHHhccCcchHHHHHHHHhccc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--Cccc--------
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGN--NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI--SGKG--------  163 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~--l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~--~~~~--------  163 (233)
                      ...-+.+..+-|......+....  ..+..+.+.+.....+...|+.++|+...+..++-......  ..+.        
T Consensus       154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (352)
T PF02259_consen  154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE  233 (352)
T ss_pred             HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc
Confidence            33444446666776666665211  12237888899999999999999999999999982211110  0000        


Q ss_pred             ----------hhhhhhhhhhhhhhhHHHHHHc------CCcHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 026773          164 ----------AYRFTISIVGIILKKLIRVSHF------NRFEEGAEQFRIDVAQNPNDTEESIWCFL  214 (233)
Q Consensus       164 ----------~y~~~~~~~~a~~~rG~al~~l------GryeeAi~~f~kAL~lnP~d~e~~~~~~l  214 (233)
                                ......-...+++.+|.-....      +..+++++.|..+++++|+....+...+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  234 SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                      0000012367777888888888      99999999999999999998886655543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=88.66  E-value=0.3  Score=46.71  Aligned_cols=72  Identities=10%  Similarity=0.134  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      -...+.+.+.+.+..+++.+|+..-.-+++.++...     ..+|.         ||.++..+.++++|+++...+...+
T Consensus       274 r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~t-----ka~~R---------r~~~~~~~~~~~~a~~~~~~a~~~~  339 (372)
T KOG0546|consen  274 RFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKT-----KAHYR---------RGQAYKLLKNYDEALEDLKKAKQKA  339 (372)
T ss_pred             ccccccchHHhcccccCCCcceeccccccccChhhC-----cHHHH---------HHhHHHhhhchhhhHHHHHHhhccC
Confidence            334555677888899999999999999999999888     67888         9999999999999999999999999


Q ss_pred             CCCHHH
Q 026773          203 PNDTEE  208 (233)
Q Consensus       203 P~d~e~  208 (233)
                      |++.+.
T Consensus       340 p~d~~i  345 (372)
T KOG0546|consen  340 PNDKAI  345 (372)
T ss_pred             cchHHH
Confidence            998864

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=88.62  E-value=2.5  Score=43.45  Aligned_cols=68  Identities=12%  Similarity=0.070  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~  206 (233)
                      ..+++.++...|-.-.|-....+++.|+-..+     -.++         ..|.++..+.+.+.|++.|+.|++++|+++
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sep-----l~~~---------~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~  710 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEP-----LTFL---------SLGNAYLALKNISGALEAFRQALKLTTKCP  710 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCc-----hHHH---------hcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence            34455555555555555555555555553333     1223         378888888888888888888888888887


Q ss_pred             HH
Q 026773          207 EE  208 (233)
Q Consensus       207 e~  208 (233)
                      +.
T Consensus       711 ~~  712 (886)
T KOG4507|consen  711 EC  712 (886)
T ss_pred             hh
Confidence            64

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.14  E-value=6.6  Score=36.73  Aligned_cols=74  Identities=9%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      .-|-.+......+.++..+|+|+||....+.|+.-+|+++     ...         .|.=..-.++|...++.+.+-.-
T Consensus       202 k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-----etL---------~Nliv~a~~~Gkd~~~~~r~l~Q  267 (299)
T KOG3081|consen  202 KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP-----ETL---------ANLIVLALHLGKDAEVTERNLSQ  267 (299)
T ss_pred             ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH-----HHH---------HHHHHHHHHhCCChHHHHHHHHH
Confidence            4567788888899999999999999999999999999998     332         34777888899999998887655


Q ss_pred             HH-cCCCCH
Q 026773          199 VA-QNPNDT  206 (233)
Q Consensus       199 L~-lnP~d~  206 (233)
                      ++ ..|+++
T Consensus       268 Lk~~~p~h~  276 (299)
T KOG3081|consen  268 LKLSHPEHP  276 (299)
T ss_pred             HHhcCCcch
Confidence            55 456655

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.67  E-value=2.2  Score=32.69  Aligned_cols=54  Identities=9%  Similarity=0.030  Sum_probs=43.2

Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHH---HHHHHcCCHHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCF---LCEAQLYGVDEARNRF  229 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~---l~~a~Lg~~dEA~~~~  229 (233)
                      +.+|+-+|..++.++|+..++++++..++.++.+.-.|   -+++.-|.+++.++.-
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999998776544443   3455778888877653

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=87.16  E-value=0.85  Score=43.69  Aligned_cols=59  Identities=10%  Similarity=0.140  Sum_probs=53.0

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      ..+.+..++|-.++.-++  +++|++++++...|...-.-++..+|=.+|-||+.++|.+.
T Consensus       126 ~~~~Gk~ekA~~lfeHAl--alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHAL--ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHhccchHHHHHHHHHHH--hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            345556778888888888  89999999999999999999999999999999999999988

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.03  E-value=1.4  Score=42.75  Aligned_cols=64  Identities=9%  Similarity=0.103  Sum_probs=45.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--SIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       129 ~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      .+-.++..+|||..|++..+- |+++..       ..++..  .-+-.++..|.+|.+++||.+|+..|...+-
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~-idl~~~-------~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLEN-IDLNKK-------GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhc-cCcccc-------hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567889999999987753 444433       222221  2245666799999999999999999988653

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=86.50  E-value=3.6  Score=39.55  Aligned_cols=79  Identities=8%  Similarity=0.011  Sum_probs=59.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ..-|+|+..|......-...|-|.+--..|.+++...|.++      ..|-       .--..-+...++++.+.+.|.+
T Consensus       101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nv------dlWI-------~~c~~e~~~~ani~s~Ra~f~~  167 (435)
T COG5191         101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNV------DLWI-------YCCAFELFEIANIESSRAMFLK  167 (435)
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------eeee-------eeccchhhhhccHHHHHHHHHh
Confidence            45578888888877777777788888888888888888888      2342       0134456677888888888888


Q ss_pred             HHHcCCCCHHHH
Q 026773          198 DVAQNPNDTEES  209 (233)
Q Consensus       198 AL~lnP~d~e~~  209 (233)
                      ++++||+.|..|
T Consensus       168 glR~N~~~p~iw  179 (435)
T COG5191         168 GLRMNSRSPRIW  179 (435)
T ss_pred             hhccCCCCchHH
Confidence            888888888644

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=86.39  E-value=2.8  Score=40.46  Aligned_cols=94  Identities=20%  Similarity=0.333  Sum_probs=70.9

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      -|+....+|+.+.  .+.| +|.+-.||+.+....--.+.+++..+...+ +|.-.  |-..|+-         -||-.+
T Consensus       311 DW~~I~aLYdaL~--~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~--gy~~~h~---------~RadlL  375 (415)
T COG4941         311 DWPAIDALYDALE--QAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLD--GYHLYHA---------ARADLL  375 (415)
T ss_pred             ChHHHHHHHHHHH--HhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccc--cccccHH---------HHHHHH
Confidence            6788888888876  4444 466678999999888888888888876554 33322  0001333         499999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHH
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIW  211 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~  211 (233)
                      ..+|+-+||-+.|++++.+.++.+|..+.
T Consensus       376 ~rLgr~~eAr~aydrAi~La~~~aer~~l  404 (415)
T COG4941         376 ARLGRVEEARAAYDRAIALARNAAERAFL  404 (415)
T ss_pred             HHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence            99999999999999999999998886443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=85.73  E-value=7.1  Score=39.32  Aligned_cols=86  Identities=10%  Similarity=0.040  Sum_probs=56.2

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN  186 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG  186 (233)
                      ...+|..++  ..-+.|...|.+.-...-..+.+.+=-..|.+++...|+++      ..|-        .-+.=.+..+
T Consensus        90 Iv~lyr~at--~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~------dLWI--------~aA~wefe~n  153 (568)
T KOG2396|consen   90 IVFLYRRAT--NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP------DLWI--------YAAKWEFEIN  153 (568)
T ss_pred             HHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc------hhHH--------hhhhhHHhhc
Confidence            445666665  55566777777665444455557777778888888888877      2343        1344445555


Q ss_pred             C-cHHHHHHHHHHHHcCCCCHHH
Q 026773          187 R-FEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       187 r-yeeAi~~f~kAL~lnP~d~e~  208 (233)
                      . .+.|.+.|.++|+.+|+.+.-
T Consensus       154 ~ni~saRalflrgLR~npdsp~L  176 (568)
T KOG2396|consen  154 LNIESARALFLRGLRFNPDSPKL  176 (568)
T ss_pred             cchHHHHHHHHHHhhcCCCChHH
Confidence            5 777888888888888877753

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.17  E-value=11  Score=39.14  Aligned_cols=104  Identities=13%  Similarity=0.257  Sum_probs=82.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-LdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      .-||++.+-|..|  +.+..|+..+-+.-|..|+. .||.-+ -||-.-.|.        ..|..|-..|+.+.|...|+
T Consensus       343 RQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka-~Gs~~~Lw~--------~faklYe~~~~l~~aRvife  411 (835)
T KOG2047|consen  343 RQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKA-VGSPGTLWV--------EFAKLYENNGDLDDARVIFE  411 (835)
T ss_pred             hcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccC-CCChhhHHH--------HHHHHHHhcCcHHHHHHHHH
Confidence            7899999999887  46678999999999999885 688877 455566665        68889999999999999999


Q ss_pred             HHHHcCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHhh
Q 026773          197 IDVAQNPNDTE--ESIWCFLCEA--QLYGVDEARNRFLEA  232 (233)
Q Consensus       197 kAL~lnP~d~e--~~~~~~l~~a--~Lg~~dEA~~~~l~~  232 (233)
                      +|.+.+-.-.+  +..|+..+..  ...+++.|...+..+
T Consensus       412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A  451 (835)
T KOG2047|consen  412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA  451 (835)
T ss_pred             HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence            99998765433  3467766655  456889998877654

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.98  E-value=6.1  Score=39.80  Aligned_cols=83  Identities=10%  Similarity=0.090  Sum_probs=65.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      +..|+++--....+..+...|+-+.|+..++.+++  ++.-     ..     ....+..+|+.+..+.+|..|..+++.
T Consensus       261 ~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~k-----Q~-----~~l~~fE~aw~~v~~~~~~~aad~~~~  328 (546)
T KOG3783|consen  261 KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMK-----QV-----KSLMVFERAWLSVGQHQYSRAADSFDL  328 (546)
T ss_pred             HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            57799999999999999999999999999999998  3221     11     145667799999999999999999999


Q ss_pred             HHHcCCCCHHHHHHH
Q 026773          198 DVAQNPNDTEESIWC  212 (233)
Q Consensus       198 AL~lnP~d~e~~~~~  212 (233)
                      ...++--.--.|.+.
T Consensus       329 L~desdWS~a~Y~Yf  343 (546)
T KOG3783|consen  329 LRDESDWSHAFYTYF  343 (546)
T ss_pred             HHhhhhhhHHHHHHH
Confidence            887766543334333

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=84.88  E-value=2.6  Score=41.26  Aligned_cols=99  Identities=10%  Similarity=-0.035  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      .+...+|.++.-++-++++++.|++|+++..++.+    +..-    ..++..+|..+..+.++++|+-...+|.++--+
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D----~~LE----lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s  194 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD----AMLE----LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS  194 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC----ceee----eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence            67778999999999999999999999999876652    2211    235667999999999999999999998887543


Q ss_pred             C----H------HHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          205 D----T------EESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       205 d----~------e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .    .      ...+.+..++..+|+.-.|.+.-+|
T Consensus       195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E  231 (518)
T KOG1941|consen  195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE  231 (518)
T ss_pred             cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            1    1      1123334556677777666665544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.79  E-value=6.5  Score=34.95  Aligned_cols=145  Identities=19%  Similarity=0.100  Sum_probs=84.5

Q ss_pred             hhhhcchhHHhHhhHhHhhhhhhhhhhhhHhhhhhccCCCCCchhhh-HHhhhhcc---CCcchhhcccccccccccccc
Q 026773           16 KSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSF-HRSLLTSK---APLSVQTHINSLFSTPRGHYL   91 (233)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~n~~~~~~~~h~~   91 (233)
                      ++-|..-|+-.+.-+-=|+-||=.    .+-.||...|.    +-+- -|.++.|.   +-++.+|..+.--..+..|  
T Consensus        47 ~~pt~~~ky~~l~~le~Y~kCiel----Aa~Iq~i~~~e----~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~--  116 (203)
T PF11207_consen   47 KNPTDKNKYQLLEALEKYSKCIEL----AAQIQHIKQKE----RKTDRFRALLHSYQELERLQEETKNSQDPYLLYYH--  116 (203)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHH----HhcCeeechHh----HHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHH--
Confidence            445556677888888889999842    22344443332    2111 12233322   2234444444333333333  


Q ss_pred             ccchhHHHhccCcchHHHHHHHHhcccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773           92 QNRAPTFTRRLFIPSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI  169 (233)
Q Consensus        92 ~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P--~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~  169 (233)
                            |+|.+- ..|...+-++   +-.|  ++++..+.+|..|. ..|.++|+..+.+|+++.+.+.      .+.  
T Consensus       117 ------Wsr~~d-~~A~~~fL~~---E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~------~~n--  177 (203)
T PF11207_consen  117 ------WSRFGD-QEALRRFLQL---EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD------NFN--  177 (203)
T ss_pred             ------hhccCc-HHHHHHHHHH---cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC------CCC--
Confidence                  333221 2233334333   2333  67887777766555 7899999999999999987663      111  


Q ss_pred             hhhhhhhhhHHHHHHcCCcHHH
Q 026773          170 SIVGIILKKLIRVSHFNRFEEG  191 (233)
Q Consensus       170 ~~~~a~~~rG~al~~lGryeeA  191 (233)
                        .+++..++.+++.+|+++.|
T Consensus       178 --~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  178 --PEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             --HHHHHHHHHHHHHhcchhhh
Confidence              24666799999999999987

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=83.93  E-value=2.2  Score=43.91  Aligned_cols=94  Identities=13%  Similarity=-0.021  Sum_probs=58.4

Q ss_pred             cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773          116 GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF  195 (233)
Q Consensus       116 ~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f  195 (233)
                      |++-+|.++.-+..-......+|+.-+|+.++..|+-+-|....   +-.         .+.+|.++.++|+..+|--.+
T Consensus       205 glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k---di~---------lLSlaTiL~RaG~sadA~iIL  272 (886)
T KOG4507|consen  205 GLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK---DIA---------LLSLATVLHRAGFSADAAVIL  272 (886)
T ss_pred             hhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc---cch---------hhhHHHHHHHcccccchhhee
Confidence            34667777766655555556789999999999999999987661   222         234566666666666665555


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773          196 RIDVAQNPNDTEESIWCFLCEAQLYG  221 (233)
Q Consensus       196 ~kAL~lnP~d~e~~~~~~l~~a~Lg~  221 (233)
                      ..|+.-.|..++.++-.+.+.++++.
T Consensus       273 hAA~~dA~~~t~n~y~l~~i~aml~~  298 (886)
T KOG4507|consen  273 HAALDDADFFTSNYYTLGNIYAMLGE  298 (886)
T ss_pred             ehhccCCccccccceeHHHHHHHHhh
Confidence            55555555444444444444444443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=83.20  E-value=3.6  Score=36.95  Aligned_cols=60  Identities=13%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             HHcCCHHHHHHHHHHHHhhC-CCCCCCccchhhhhhhhhhhhhhhHHHHHHcC-CcHHHHHHHHHHHHc
Q 026773          135 FRQGDVVGSVAEFDKAIELD-PRQKISGKGAYRFTISIVGIILKKLIRVSHFN-RFEEGAEQFRIDVAQ  201 (233)
Q Consensus       135 ~~lGdyeeAIadfdkAIeLd-P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG-ryeeAi~~f~kAL~l  201 (233)
                      ..+||++-|...+.|+=.+. ..++     ...  ..+.+.+++.|..++..+ ++++|+.++++|.++
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~-----~~~--~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDP-----DMA--EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCc-----HHH--HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            46899999999999998877 3333     111  246789999999999999 999999999999988

It is also involved in sporulation [].

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=82.89  E-value=1.4  Score=42.14  Aligned_cols=57  Identities=16%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIR-RGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~-RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      +++-....-.||.+++  +++|+|++.|.. ...-++..++++.+-+.|.++|++||++|
T Consensus       119 k~k~y~~~~nI~~~~l--~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p  176 (435)
T COG5191         119 KKKMYGEMKNIFAECL--TKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             HHHHHHHHHHHHHHHH--hcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence            3334445566777777  899999999998 66678889999999999999999999999

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=82.59  E-value=5.9  Score=35.22  Aligned_cols=36  Identities=17%  Similarity=0.105  Sum_probs=32.7

Q ss_pred             CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCC
Q 026773          123 EAVVAIRRGMLLFRQ------GDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~l------GdyeeAIadfdkAIeLdP~~~  158 (233)
                      .+.++..+|......      ++.++++..|.+|++++|+..
T Consensus       251 ~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  251 KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence            468888999988888      999999999999999999877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.54  E-value=1.4  Score=42.58  Aligned_cols=59  Identities=17%  Similarity=0.027  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      -++...+..+...|-|++|.+.-++|++|||.+.     +..-.         ++.++.+.||+.|+++-..+
T Consensus       176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~-----Wa~Ha---------~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  176 YVHGMYAFGLEECGIYDDAEKQADRALQINRFDC-----WASHA---------KAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHHhhHHHhccchhHHHHHHhhccCCCcch-----HHHHH---------HHHHHHhcchhhhHHHHHHh
Confidence            3344444456678999999999999999999887     55444         77788888888888776544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=82.43  E-value=16  Score=41.04  Aligned_cols=112  Identities=18%  Similarity=0.230  Sum_probs=86.9

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      ..|.++++.-+  +.--+...+|...|..++++.+-++|-....+|++-=|..-       +     ++.|-..+..-++
T Consensus      1547 ~~A~ell~~m~--KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e-------H-----v~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1547 DEADELLRLML--KKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE-------H-----VEFISKFAQLEFK 1612 (1710)
T ss_pred             hhHHHHHHHHH--HHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh-------h-----HHHHHHHHHHHhh
Confidence            34444555444  33336789999999999999999999999999999999732       1     2345568899999


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~--~a~Lg~~dEA~~~~l~~  232 (233)
                      .|+-|.+...|+-.+.-.|.-.+  +|.-..  ..+.|+.+-++..|+.+
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtD--lW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTD--LWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchh--HHHHHHHHHHccCCHHHHHHHHHHH
Confidence            99999999999999999998776  455434  45778888888888764

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.37  E-value=7.3  Score=29.88  Aligned_cols=67  Identities=16%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      +.....+|.=++.+.+.++||..+.+|++-.++.+     . -|.     +.=-+..++...|+|+++++.-.+=+++
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-----~-rf~-----~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-----D-RFR-----VLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-----H-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567889999999999999999999999999866     2 222     1112556889999999988876654443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=82.33  E-value=2.5  Score=42.35  Aligned_cols=53  Identities=15%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCC
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd-yeeAIadfdkAIeLdP~~~  158 (233)
                      ......+|.+++  ..+|++|+.|..-+.-.+..+. .+.|-+.|.++|+.+|+.+
T Consensus       121 ~~~v~ki~~~~l--~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp  174 (568)
T KOG2396|consen  121 YGEVKKIFAAML--AKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP  174 (568)
T ss_pred             hhHHHHHHHHHH--HhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh
Confidence            456788999998  9999999999999999988877 9999999999999999998

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.16  E-value=2.7  Score=41.01  Aligned_cols=88  Identities=17%  Similarity=0.125  Sum_probs=59.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ....+++.-|-.+|.+...+|+++-|.++|.++=..+                      .+...+.-.|+-+.=.+..+.
T Consensus       341 a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~----------------------~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  341 AKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS----------------------GLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH----------------------HHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc----------------------ccHHHHHHhCCHHHHHHHHHH
Confidence            3456789999999999999999999999998863221                      267778888887665555555


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |.+..-.     .-.+.|...+|+.++-.+.+.++
T Consensus       399 a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  399 AEERGDI-----NIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence            5544321     22344666778888877776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.15  E-value=6.1  Score=34.17  Aligned_cols=62  Identities=11%  Similarity=-0.128  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773          143 SVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  218 (233)
Q Consensus       143 AIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~  218 (233)
                      |+..|.+|+.+.|+++     ..+.+         +|++....|+.=+|+-.|-|++-..--.+.+.-+......+
T Consensus         1 A~~~Y~~A~~l~P~~G-----~p~nQ---------LAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNG-----NPYNQ---------LAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBS-----HHHHH---------HHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCC-----Ccccc---------hhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7889999999999998     44444         99999999999999999999997654445444444333333

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=81.94  E-value=2.9  Score=31.56  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=32.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      ...+..++|.++...|++++|+..+++||++-....
T Consensus        40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~   75 (94)
T PF12862_consen   40 LAYALLNLAELHRRFGHYEEALQALEEAIRLARENG   75 (94)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence            467889999999999999999999999999987665

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.80  E-value=12  Score=34.68  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH-cCCcHHHHHHHHHHHHc
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH-FNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~-lGryeeAi~~f~kAL~l  201 (233)
                      -+..|..-+.+ ++.+|.++|+.+.++||+|-.+-.     ....   ...-....|-+|-. +.+++.||..|+.|-+-
T Consensus        73 aat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~G-----rf~~---aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   73 AATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMG-----RFTM---AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             HHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhh-----HHHH---HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            34555555554 556699999999999999976544     1111   01111235555543 47899999999998775


Q ss_pred             CCCC-HHHHHHHH-----HHHHHcCCHHHHHHHHHhh
Q 026773          202 NPND-TEESIWCF-----LCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 nP~d-~e~~~~~~-----l~~a~Lg~~dEA~~~~l~~  232 (233)
                      =..+ .....+.-     .--++++++.+|++.|+++
T Consensus       144 yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv  180 (288)
T KOG1586|consen  144 YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV  180 (288)
T ss_pred             HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332 22223321     1133789999999998875

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.73  E-value=2.4  Score=31.94  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=30.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCC
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPRQK  158 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-------dP~~~  158 (233)
                      +++..+..++.-+-..|++++||..|.+||++       .|+.+
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~   47 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP   47 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence            34667888999999999999999888888765       67666

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=81.07  E-value=20  Score=40.31  Aligned_cols=112  Identities=14%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             cchhHHHhccC-cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCCCccchhhhh--
Q 026773           93 NRAPTFTRRLF-IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPRQKISGKGAYRFT--  168 (233)
Q Consensus        93 ~~~~~~~r~~~-~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-LdP~~~~~~~~~y~~~--  168 (233)
                      |....-.+.+- .|+.++-+...+  .-+||++-.|.+.=.-+..+++.++|-+.+++|+. ||++-..  .+-..|.  
T Consensus      1428 ~~~~~e~~dl~~~pesaeDferlv--rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee--EKLNiWiA~ 1503 (1710)
T KOG1070|consen 1428 NRSDEEERDLSRAPESAEDFERLV--RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE--EKLNIWIAY 1503 (1710)
T ss_pred             cccchhhcccccCCcCHHHHHHHH--hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH--HHHHHHHHH
Confidence            33333444443 565555666666  67899999999986666789999999999999995 6776541  0012221  


Q ss_pred             -h----------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          169 -I----------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       169 -~----------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                       +                      .-.-++..+.-+|...+.+++|.+.++..++.--+-...
T Consensus      1504 lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v 1566 (1710)
T KOG1070|consen 1504 LNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV 1566 (1710)
T ss_pred             HhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH
Confidence             0                      013344556677777888888888888888765544443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.96  E-value=1.8  Score=25.43  Aligned_cols=21  Identities=14%  Similarity=0.037  Sum_probs=17.6

Q ss_pred             hhhHHHHHHcCCcHHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~  196 (233)
                      .++|.++...|++++|...++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            458999999999999988775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=80.61  E-value=5.7  Score=33.87  Aligned_cols=27  Identities=30%  Similarity=0.327  Sum_probs=18.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          132 MLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       132 ~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      .+-...++.+++....+..=-+.|+.+
T Consensus        18 ~~aL~~~d~~D~e~lLdALrvLrP~~~   44 (153)
T TIGR02561        18 MYALRSADPYDAQAMLDALRVLRPNLK   44 (153)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCcc
Confidence            333447777777777777777777776

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=80.06  E-value=14  Score=37.10  Aligned_cols=61  Identities=10%  Similarity=0.093  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      +-..++++.-++|+.+|||+.|..-++.+|...     .       .++..++-.++..+++|.++-+.+.+-
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-----~-------l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-----N-------LNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-----h-------hhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            345567788899999999999999999998643     1       124556889999999999999998885

The molecular function of this protein is uncertain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-04

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177
            N++ EA    +   L ++ GD   S++E  + ++LD   K      +   +  +  +++
Sbjct: 207 KNDNTEAFY--KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA--HYKQVKKLNKLIE 262

Query: 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTE--ESIWCFLCEA 217
               +    R+ +   ++   +   P+  E        +C  
Sbjct: 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 15/103 (14%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE 189
            G+ L + G+   +   FD  +ELDP         Y +     GI L          R +
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPT--------YNYAHLNRGIALYYG------GRDK 128

Query: 190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232
              +        +PND   S+W +L E +L    +A+    + 
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQH 170

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 14/102 (13%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177
            +++ EA    +   L ++ GD   S++E  + ++LD   K      +   +  +  +++
Sbjct: 184 KSDNTEAFY--KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA--HYKQVKKLNKLIE 239

Query: 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESI--WCFLCEA 217
               +    R+ +   ++   +   P+  E ++     +C  
Sbjct: 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 14/90 (15%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177
            N  R+       G+   ++GD+  +V  F+ A++ DP+       A++     +G    
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME----AWQ----YLGTTQA 109

Query: 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207
           +        +        R  +   P++  
Sbjct: 110 EN------EQELLAISALRRCLELKPDNQT 133

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-QKISGKGAYRFTISIVGIILKK 178
              +  V    G++ F+ G+   +   F  A+E             +   ++ +G + +K
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248

Query: 179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFL 214
           L       ++ E  +  R  +   P +     +  +
Sbjct: 249 L------KKYAEALDYHRQALVLIPQNAS--TYSAI 276

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 14/90 (15%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177
            N  ++   A   G+   ++GD+  ++   + AI  DP        A++     +GI   
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP----GDAEAWQ----FLGITQA 110

Query: 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207
           +          +      +  +   PN+ +
Sbjct: 111 EN------ENEQAAIVALQRCLELQPNNLK 134

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 14/80 (17%)

Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRF 188
            RG + F   +   +  +FDKA ELDP           F    +  +  +       N+F
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPE--------NIFPYIQLACLAYRE------NKF 354

Query: 189 EEGAEQFRIDVAQNPNDTEE 208
           ++    F     + P   E 
Sbjct: 355 DDCETLFSEAKRKFPEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 14/88 (15%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179
           +       I+   L +R+         F +A    P           F       IL   
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE----VPNF----FAEILTDK 385

Query: 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTE 207
                 N F++  +Q+ + +        
Sbjct: 386 ------NDFDKALKQYDLAIELENKLDG 407

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 11/103 (10%), Positives = 19/103 (18%), Gaps = 14/103 (13%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE 189
                     V   +    +A  L P Q +         I+      + L         +
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGLTPEQVV--------AIASHDGGKQAL------ETVQ 157

Query: 190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232
                        P            +  L  V        +A
Sbjct: 158 ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQA 200

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 14/78 (17%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE 189
            G +   +G +  ++  +  A+ L P         Y      +   L            E
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDF----IDGY----INLAAALVAA------GDME 118

Query: 190 EGAEQFRIDVAQNPNDTE 207
              + +   +  NP+   
Sbjct: 119 GAVQAYVSALQYNPDLYC 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.81
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.73
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.73
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.73
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.7
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.69
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.68
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.67
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.65
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.65
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.64
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.64
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.62
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.62
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.62
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.58
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.58
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.58
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.57
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.57
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.57
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.57
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.57
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.56
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.56
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.56
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.56
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.55
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.55
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.54
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.54
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.54
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.52
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.52
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.52
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.51
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.51
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.51
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.51
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.51
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.5
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.5
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.5
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.5
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.49
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.48
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.48
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.48
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.47
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.47
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.47
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.47
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.46
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.46
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.45
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.45
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.45
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.45
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.44
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.44
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.43
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.42
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.42
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.42
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.42
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.42
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.4
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.39
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.39
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.38
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.38
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.38
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.36
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.36
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.35
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.35
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.34
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.32
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.28
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.28
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.27
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.27
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.26
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.25
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.24
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.17
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.16
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.16
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.16
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.15
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.14
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.13
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.12
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.12
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.11
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.11
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.11
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.1
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.06
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.03
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.03
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.02
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.01
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.99
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.97
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.88
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.84
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.83
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.8
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.78
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.74
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.73
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.72
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.7
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.68
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.58
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.54
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.49
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.48
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.48
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.46
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.42
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.41
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.3
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.21
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.14
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.13
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.12
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.11
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.97
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.95
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.93
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.82
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.79
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.73
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.71
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.65
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.55
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.54
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.52
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.35
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.07
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.91
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.89
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.8
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.71
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.31
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.76
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.59
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.02
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.73
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.25
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.98
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.8
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.71
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	91.88
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.82
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.66
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.6
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.65
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.64
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.34
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.74
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	86.32
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.79
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	80.06

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.81  E-value=1.8e-19  Score=138.94  Aligned_cols=101  Identities=14%  Similarity=0.213  Sum_probs=79.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      .+||+.+++|.++|.+++..|+|++|++.|++||+++|+++     ..+.         ++|.++..+|++++|+++|++
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~~~~~~~~~~~~~~A~~~~~~   72 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA-----ILYS---------NRAACLTKLMEFQRALDDCDT   72 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHhhHHHhhccHHHHHHHHHH
Confidence            47888888888888888888888888888888888888776     3333         478888888888888888888


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|++++.+..++.|+..+|++++|...|.++
T Consensus        73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a  107 (126)
T 4gco_A           73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDA  107 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            88888888888777888888888888888877654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=3.5e-19  Score=143.59  Aligned_cols=101  Identities=13%  Similarity=0.068  Sum_probs=95.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      +++|+++++++.+|.+++.+|++++|+..|+++++++|+++     .++.         ++|.++..+|+|++|++.|++
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~-----~~~~---------~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV-----DYIM---------GLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHHHccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999998     4433         599999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|++++.+++++.|+..+|++++|+..|.++
T Consensus        96 al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A           96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV  130 (151)
T ss_dssp             HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=1.5e-17  Score=128.04  Aligned_cols=104  Identities=12%  Similarity=0.196  Sum_probs=92.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+-+.+-...|...|++++  +++|+++.+|.++|.++..+|++++|+++|++||+++|+++     ..++        
T Consensus        21 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~a~~--------   85 (126)
T 4gco_A           21 NEYFKKGDYPTAMRHYNEAV--KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI-----KGYI--------   85 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh-----HHHH--------
Confidence            44556667788999999999  99999999999999999999999999999999999999988     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC  215 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~  215 (233)
                       ++|.++..+|++++|+++|+++++++|++++....++.|
T Consensus        86 -~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           86 -RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence             599999999999999999999999999999876555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.73  E-value=2.4e-17  Score=129.94  Aligned_cols=108  Identities=11%  Similarity=0.089  Sum_probs=93.2

Q ss_pred             HHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCc
Q 026773          109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRF  188 (233)
Q Consensus       109 ~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGry  188 (233)
                      ..+..++  +++|+++.+++.+|.+++..|++++|+..|+++++++|+++     .+++         ++|.++..+|++
T Consensus         8 ~~~~~al--~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~~g~~   71 (148)
T 2vgx_A            8 GTIAMLN--EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS-----RFFL---------GLGACRQAMGQY   71 (148)
T ss_dssp             CSHHHHT--TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCH
T ss_pred             hhHHHHH--cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH-----HHHH---------HHHHHHHHHhhH
Confidence            3566667  78899999999999999999999999999999999999887     3433         489999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          189 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       189 eeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|++.|+++++++|++++.++.++.|+..+|++++|...|.++
T Consensus        72 ~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           72 DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999998888888999999999999888764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.73  E-value=4.5e-17  Score=134.41  Aligned_cols=121  Identities=12%  Similarity=-0.000  Sum_probs=104.9

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-..+|...+.+++  +++|+++.+|..+|.++..+|++++|+..|++|++++|+++     ..+.        
T Consensus        13 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~--------   77 (217)
T 2pl2_A           13 VQLYALGRYDAALTLFERAL--KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL-----GGYM--------   77 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHH--------
Confidence            34555566678999999999  99999999999999999999999999999999999999988     3433        


Q ss_pred             hhhHHHHHHc-----------CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHF-----------NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~l-----------GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       ++|.++..+           |++++|++.|+++++++|++++.+..++.++..+|++++|+..|.++
T Consensus        78 -~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  144 (217)
T 2pl2_A           78 -VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA  144 (217)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence             488888888           88888888888888888888888888888888888888888888764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.73  E-value=1.1e-16  Score=125.73  Aligned_cols=130  Identities=11%  Similarity=0.060  Sum_probs=114.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------  169 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------  169 (233)
                      ..+.+.+-..+|...|++++  +++|+++++|..+|.++..+|++++|+..++++++.+|+++     ..+...      
T Consensus        13 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   85 (184)
T 3vtx_A           13 DKKRTKGDFDGAIRAYKKVL--KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA-----EAYYILGSANFM   85 (184)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH-----HHHHHHHHHHHH
Confidence            34556667788999999999  89999999999999999999999999999999999999887     222210      


Q ss_pred             -------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          170 -------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       170 -------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                                         .-..++..+|.++..+|++++|++.|+++++++|++++.+..++.++.++|++++|+..|.
T Consensus        86 ~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  165 (184)
T 3vtx_A           86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFK  165 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence                               1167788999999999999999999999999999999999999999999999999999997


Q ss_pred             hh
Q 026773          231 EA  232 (233)
Q Consensus       231 ~~  232 (233)
                      ++
T Consensus       166 ~a  167 (184)
T 3vtx_A          166 KA  167 (184)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.73  E-value=2e-17  Score=127.54  Aligned_cols=107  Identities=15%  Similarity=0.144  Sum_probs=87.2

Q ss_pred             HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE  189 (233)
Q Consensus       110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye  189 (233)
                      .+.+++  +++|+++++++.+|.+++..|++++|+..|+++++++|+++     .+++         ++|.++..+|+++
T Consensus         6 ~l~~al--~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~~g~~~   69 (142)
T 2xcb_A            6 TLAMLR--GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA-----RYFL---------GLGACRQSLGLYE   69 (142)
T ss_dssp             ---CCT--TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHH
T ss_pred             hHHHHH--cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH-----HHHH---------HHHHHHHHHhhHH
Confidence            344445  78888888888888888888888888888888888888887     3433         4888888888888


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++.|+++++++|++++.+..++.|+..+|++++|...|.++
T Consensus        70 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           70 QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888887754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1e-16  Score=119.60  Aligned_cols=87  Identities=15%  Similarity=0.166  Sum_probs=43.4

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      +.+-...|...|.+++  +++|+++.+|.++|.++..+|++++|+++|++|++++|+++     ..++         ++|
T Consensus        16 ~~~~~~~A~~~~~~al--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg   79 (126)
T 3upv_A           16 TKSDWPNAVKAYTEMI--KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-----RAYI---------RKA   79 (126)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHH
T ss_pred             HhcCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHH---------HHH
Confidence            3333444455555554  44555555555555555555555555555555555555444     2222         255


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcC
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      .++..+|++++|++.|+++++++
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhC
Confidence            55555555555555555555555

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.70  E-value=3.4e-17  Score=128.78  Aligned_cols=109  Identities=9%  Similarity=-0.020  Sum_probs=88.8

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      ..+...+..++  ..+|+++.+++.+|.+++.+|+|++|++.|++||+++|+++     ..+.         ++|.++..
T Consensus        14 e~ai~~~~~a~--~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~-----~a~~---------~lg~~~~~   77 (150)
T 4ga2_A           14 ERYIASVQGST--PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP-----KAHR---------FLGLLYEL   77 (150)
T ss_dssp             HHHHHHHHHHS--CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHH
T ss_pred             HHHHHHHHHhc--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHH
Confidence            45666666666  77888888888888888888888888888888888888887     3333         48888888


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                      +|++++|++.|+++++++|++++.+..++.++.++|++++|...+
T Consensus        78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~  122 (150)
T 4ga2_A           78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYW  122 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred             cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            888888888888888888888888888888888888887766654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.69  E-value=1e-16  Score=146.90  Aligned_cols=121  Identities=11%  Similarity=-0.032  Sum_probs=96.3

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd-yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ..+.+.+....|...+++++  +++|+++.+|++||.++..+|+ +++|+++|++||+++|+++     ..++       
T Consensus       105 ~~~~~~g~~~~Al~~~~~al--~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~-----~a~~-------  170 (382)
T 2h6f_A          105 AVLQRDERSERAFKLTRDAI--ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-----QVWH-------  170 (382)
T ss_dssp             HHHHHTCCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH-----HHHH-------
T ss_pred             HHHHHCCChHHHHHHHHHHH--HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH-----HHHH-------
Confidence            34555566788899999999  8999999999999999999996 9999999999999999987     3333       


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                        ++|.++..+|++++|+++|+++++++|+++..+.+++.++..+|++++|+..+.++
T Consensus       171 --~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          171 --HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             --HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             --HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence              47777777777777777777777777777777777777777777777777776553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.68  E-value=2.4e-16  Score=156.10  Aligned_cols=120  Identities=10%  Similarity=0.045  Sum_probs=80.2

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-..+|...|.+++  +++|+++.+|.++|.++..+|++++|++.|++||+++|+++     ..+.        
T Consensus        17 ~~~~~~G~~~eAi~~~~kAl--~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~-----~a~~--------   81 (723)
T 4gyw_A           17 NIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA-----DAYS--------   81 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH--------
Confidence            33445555566777777777  77777777777777777777777777777777777777766     2322        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                       ++|.++..+|++++|++.|+++++++|++++.+.+++.++..+|++++|+..|.+
T Consensus        82 -nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~  136 (723)
T 4gyw_A           82 -NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT  136 (723)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             3666666666666666666666666666666666666666666666666666554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=3.3e-16  Score=129.16  Aligned_cols=119  Identities=10%  Similarity=0.042  Sum_probs=93.6

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCCCCccch
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-----------GDVVGSVAEFDKAIELDPRQKISGKGA  164 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l-----------GdyeeAIadfdkAIeLdP~~~~~~~~~  164 (233)
                      ..+.+.+-..+|...+.+++  +++|+++.+|.++|.++..+           |++++|++.|++|++++|+++     .
T Consensus        47 ~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-----~  119 (217)
T 2pl2_A           47 RTQLKLGLVNPALENGKTLV--ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA-----P  119 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH-----H
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH-----H
Confidence            34445555678899999999  89999999999999999999           999999999999999999988     3


Q ss_pred             hhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          165 YRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       165 y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      .+.         ++|.++..+|++++|++.|+++++++ ++++.+..++.++..+|++++|...+.+
T Consensus       120 ~~~---------~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  176 (217)
T 2pl2_A          120 LHL---------QRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAK  176 (217)
T ss_dssp             HHH---------HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHH---------HHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            333         36777777777777777777777777 6666666666666677777777766654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.67  E-value=1.4e-15  Score=113.35  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=85.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ..+|.++.+|..+|.+++..|++++|+..|+++++++|+++     ..+.         ++|.++..+|++++|++.|++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~l~~~~~~~~~~~~A~~~~~~   68 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYT---------NRALCYLKMQQPEQALADCRR   68 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH-----HHHH---------HHHHHHHHhcCHHHHHHHHHH
Confidence            56788899999999999999999999999999999999877     3333         489999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|+++..+..++.++..+|++++|...+.++
T Consensus        69 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999988888888888999999998888764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.66  E-value=2.3e-16  Score=121.05  Aligned_cols=98  Identities=18%  Similarity=0.159  Sum_probs=86.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      ++.+.++.++|.+++.+|+|++|++.|++||+++|+++     ..+         .++|.++..+|+|++|+++|+++++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~-----~~~---------~nlg~~~~~~~~~~~A~~~~~~al~   70 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI-----TFY---------NNKAAVYFEEKKFAECVQFCEKAVE   70 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHH---------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHH---------HhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999988     333         3699999999999999999999999


Q ss_pred             cCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          201 QNPNDT-------EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       201 lnP~d~-------e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|++.       ..+..+|.++..+|++++|+..|.++
T Consensus        71 ~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           71 VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999764       34566778888999999999998764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.66  E-value=5.4e-16  Score=127.12  Aligned_cols=104  Identities=3%  Similarity=-0.113  Sum_probs=92.0

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCC
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIR----------------RGMLLFRQGDVVGSVAEFDKAIELDPRQKIS  160 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~----------------RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~  160 (233)
                      .+-+.+-...|...+.+++  +++|+++++|+.                +|.++..+|++++|+..|++|++++|+++  
T Consensus        13 ~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--   88 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTI--ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV--   88 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred             HHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--
Confidence            3445556678899999999  899999999999                99999999999999999999999999988  


Q ss_pred             ccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773          161 GKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  216 (233)
Q Consensus       161 ~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~  216 (233)
                         ..+.         ++|.++..+|++++|++.|+++++++|++++.+..++.++
T Consensus        89 ---~~~~---------~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           89 ---DCLE---------ACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             ---HHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ---HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence               4433         5999999999999999999999999999998877776554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.65  E-value=1.2e-15  Score=119.18  Aligned_cols=108  Identities=8%  Similarity=0.064  Sum_probs=84.7

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ...+.+.+-...|...|.+++  +++|+++.+|.++|.++..+|++++|+.+|++|++++|+++     ..++       
T Consensus        18 g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~-------   83 (164)
T 3sz7_A           18 GNAAMARKEYSKAIDLYTQAL--SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS-----KAWS-------   83 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHH--HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHH-------
Confidence            344555666677888888888  78888888888888888888888888888888888888877     3333       


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  218 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~  218 (233)
                        ++|.++..+|++++|++.|+++++++|++++.++..+++.++
T Consensus        84 --~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           84 --RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             --HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             --HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence              488888888888888888888888888888776666665553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.65  E-value=4.7e-16  Score=153.94  Aligned_cols=122  Identities=12%  Similarity=0.091  Sum_probs=111.1

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ...+.+.+-..+|...|.+++  +++|+++++|+++|.++..+|++++|++.|++||+++|+++     ..+        
T Consensus        50 g~~l~~~g~~~eA~~~~~~Al--~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~-----~a~--------  114 (723)
T 4gyw_A           50 ASVLQQQGKLQEALMHYKEAI--RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA-----DAH--------  114 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHH--------
T ss_pred             HHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHH--------
Confidence            345566666788999999999  99999999999999999999999999999999999999988     333        


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       +++|.++..+|++++|++.|++|++++|++++.+.+++.++..+|++++|.+.+.++
T Consensus       115 -~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka  171 (723)
T 4gyw_A          115 -SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL  171 (723)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence             359999999999999999999999999999999999999999999999999988764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.65  E-value=2e-15  Score=122.66  Aligned_cols=121  Identities=11%  Similarity=-0.012  Sum_probs=108.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ..+-+.+-...|...++.++  +++| .++.+++++|.++..+|++++|+..|++|++++|+++     ..+.       
T Consensus        15 ~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~-------   80 (228)
T 4i17_A           15 NDALNAKNYAVAFEKYSEYL--KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA-----NAYI-------   80 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH-----HHHH-------
T ss_pred             HHHHHccCHHHHHHHHHHHH--hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH-----HHHH-------
Confidence            44555566788999999999  8898 9999999999999999999999999999999999877     3333       


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT-------EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~-------e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                        ++|.++..+|++++|++.|+++++++|+++       +.+...+.+...+|++++|...+.++
T Consensus        81 --~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  143 (228)
T 4i17_A           81 --GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA  143 (228)
T ss_dssp             --HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence              599999999999999999999999999999       55777888899999999999999875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.64  E-value=7.1e-16  Score=109.21  Aligned_cols=100  Identities=19%  Similarity=0.188  Sum_probs=91.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      ++|+++.+|..+|.++...|++++|+..|+++++++|++.     ..++         ++|.++..+|++++|++.|+++
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~a   66 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES-----KYWL---------MKGKALYNLERYEEAVDCYNYV   66 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-----HHHH---------HHHHHHHHccCHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999887     3433         5999999999999999999999


Q ss_pred             HHcCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHhh
Q 026773          199 VAQNPN--DTEESIWCFLCEAQL-YGVDEARNRFLEA  232 (233)
Q Consensus       199 L~lnP~--d~e~~~~~~l~~a~L-g~~dEA~~~~l~~  232 (233)
                      ++++|+  +++.+..++.++..+ |++++|...+.++
T Consensus        67 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           67 INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             HHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred             HHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999  999888888899999 9999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.64  E-value=1.3e-15  Score=119.75  Aligned_cols=109  Identities=12%  Similarity=-0.002  Sum_probs=94.6

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-.+.|...+.+++  +++|+++.+|..+|.++..+|++++|+..|++|++++|+++     ..+.         
T Consensus        40 ~y~~~~~~~~A~~~~~~al--~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------  103 (150)
T 4ga2_A           40 LYYEAKEYDLAKKYICTYI--NVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK-----DLVL---------  103 (150)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred             HHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH-----HHHH---------
Confidence            3445556688999999999  99999999999999999999999999999999999999998     3433         


Q ss_pred             hhHHHHHHcCCcHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773          177 KKLIRVSHFNRFEEGAEQF-RIDVAQNPNDTEESIWCFLCEAQLYG  221 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f-~kAL~lnP~d~e~~~~~~l~~a~Lg~  221 (233)
                      ++|.++..+|++++|++.| +++++++|++++.+..+...+...|+
T Consensus       104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            5999999999999888775 99999999999987777666666664

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.64  E-value=4e-16  Score=142.93  Aligned_cols=114  Identities=8%  Similarity=0.001  Sum_probs=100.5

Q ss_pred             HHHhccC-cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           97 TFTRRLF-IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        97 ~~~r~~~-~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      .+.+.+- ...|...+++++  +++|+++.+|++||.++..+|++++|+++|++||++||+++     ..+.        
T Consensus       140 ~l~~~g~d~~eAl~~~~~al--~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~-----~a~~--------  204 (382)
T 2h6f_A          140 LLKSLQKDLHEEMNYITAII--EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY-----HAWQ--------  204 (382)
T ss_dssp             HHHHTTCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHcccCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH-----HHHH--------
Confidence            3344443 678899999999  99999999999999999999999999999999999999998     3333        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL-YGVDEAR  226 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L-g~~dEA~  226 (233)
                       ++|.++..+|++++|+++|+++|+++|+++..+.+++.++..+ |..++|+
T Consensus       205 -~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          205 -HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             -HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             -HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence             5999999999999999999999999999999999999999984 4448884

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.9e-15  Score=112.71  Aligned_cols=98  Identities=16%  Similarity=0.146  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      |.++++|..+|..++..|++++|++.|++|++++|+++     ..+.         ++|.++..+|++++|+++|+++++
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~al~   66 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA-----RGYS---------NRAAALAKLMSFPEAIADCNKAIE   66 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh-----HHHH---------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999988     3433         599999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|+++..+..++.++..+|++++|...+.++
T Consensus        67 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           67 KDPNFVRAYIRKATAQIAVKEYASALETLDAA   98 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            99999999999999999999999999998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=4.1e-15  Score=112.87  Aligned_cols=121  Identities=12%  Similarity=0.139  Sum_probs=105.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+-+.+-...|...+..++  +++|+++.+|..+|.++..+|++++|+..|+++++++|+++     ..++        
T Consensus        21 ~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~--------   85 (166)
T 1a17_A           21 NDYFKAKDYENAIKFYSQAI--ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-----KGYY--------   85 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHccCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHH--------
Confidence            34445556678899999998  88999999999999999999999999999999999999887     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~--~a~Lg~~dEA~~~~l~~  232 (233)
                       ++|.++..+|++++|++.|+++++++|++.+.+.+.+.+  ....|++++|...+.++
T Consensus        86 -~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           86 -RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence             599999999999999999999999999999887666666  66789999999988764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.62  E-value=1.7e-15  Score=121.90  Aligned_cols=120  Identities=11%  Similarity=0.010  Sum_probs=97.7

Q ss_pred             hhccCCcchhhccccccccccccccccchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773           67 LTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAE  146 (233)
Q Consensus        67 ~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIad  146 (233)
                      +.+...+.....++|.......    +....+-+.+-..+|...|..++  +++|+++.+|.++|.++..+|+|++|++.
T Consensus        19 ~~~~~~l~~al~l~p~~~~~~~----~lg~~~~~~g~~~eA~~~~~~al--~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~   92 (151)
T 3gyz_A           19 INSGATLKDINAIPDDMMDDIY----SYAYDFYNKGRIEEAEVFFRFLC--IYDFYNVDYIMGLAAIYQIKEQFQQAADL   92 (151)
T ss_dssp             HHTSCCTGGGCCSCHHHHHHHH----HHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHCCCCHHHHhCCCHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHccHHHHHHH
Confidence            3444555555556655433222    23345556667788999999999  99999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773          147 FDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       147 fdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~  206 (233)
                      |++|++++|+++     ..++         ++|.++..+|++++|++.|+++++++|+.+
T Consensus        93 ~~~al~l~P~~~-----~~~~---------~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           93 YAVAFALGKNDY-----TPVF---------HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHSSSCC-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHhhCCCCc-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999     4444         599999999999999999999999999865

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.62  E-value=1.9e-15  Score=125.84  Aligned_cols=108  Identities=14%  Similarity=0.033  Sum_probs=90.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-  201 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-  201 (233)
                      .+..+.++|..++..|+|++|++.|++||+++|+++. .+ .......-..+|.|+|.++..+|+|++|+++|++||++ 
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~-~~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP-EE-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT-TS-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc-hh-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            3678899999999999999999999999999999641 00 00000000226678999999999999999999999999 


Q ss_pred             ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 ------NPNDTEES----IWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 ------nP~d~e~~----~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                            +|+++..|    +.++.++..+|+++||+..|.++
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence                  99999999    99999999999999999999875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.62  E-value=4.1e-15  Score=116.64  Aligned_cols=116  Identities=9%  Similarity=-0.014  Sum_probs=102.8

Q ss_pred             ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      .+-...|...+..++  +.+|+++.+|..+|.++...|++++|+..|+++++++|+++     ..+.         ++|.
T Consensus        23 ~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~la~   86 (177)
T 2e2e_A           23 QQNPEAQLQALQDKI--RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA-----ELYA---------ALAT   86 (177)
T ss_dssp             ----CCCCHHHHHHH--HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH-----HHHH---------HHHH
T ss_pred             ccCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHH---------HHHH
Confidence            344466888888888  88999999999999999999999999999999999999987     3433         5999


Q ss_pred             H-HHHcCCc--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          181 R-VSHFNRF--EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       181 a-l~~lGry--eeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      + +...|++  ++|++.|+++++++|++++.+...+.++..+|++++|...+.++
T Consensus        87 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A           87 VLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            9 7799999  99999999999999999999899999999999999999998764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.62  E-value=2e-15  Score=116.15  Aligned_cols=109  Identities=11%  Similarity=0.017  Sum_probs=94.5

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-..+|...+..++  +++|+++.+|..+|.++..+|++++|+..|++|++++|+++     ..++        
T Consensus        26 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~--------   90 (142)
T 2xcb_A           26 FNQYQAGKWDDAQKIFQALC--MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP-----RFPF--------   90 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----HHHH--------
T ss_pred             HHHHHHccHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----HHHH--------
Confidence            44555666778999999999  89999999999999999999999999999999999999998     4444        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY  220 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg  220 (233)
                       ++|.++..+|++++|++.|+++++++|++++...+...+...++
T Consensus        91 -~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           91 -HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence             49999999999999999999999999999876666555555444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.62  E-value=2.6e-15  Score=117.34  Aligned_cols=101  Identities=12%  Similarity=0.143  Sum_probs=93.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ..++.++.+|..+|.+++..|++++|++.|++|++++|+++     ..+.         ++|.++..+|++++|+++|++
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~l~~~~~~~g~~~~A~~~~~~   70 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP-----IYLS---------NRAAAYSASGQHEKAAEDAEL   70 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH-----HHHH---------HHHHHHHHccCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999988     3433         599999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|+++..+..++.++..+|++++|...|.++
T Consensus        71 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999999999999998764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=4.2e-15  Score=120.72  Aligned_cols=118  Identities=10%  Similarity=-0.032  Sum_probs=103.1

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-...|...+..++  +++|+++.+|..+|.++..+|++++|++.|+++++++|+++     .. + ...+.++
T Consensus        50 ~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~-~-~~~~~~~  120 (228)
T 4i17_A           50 VCADNIKKYKEAADYFDIAI--KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA-----TI-E-KLYAIYY  120 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HH-H-HHHHHHH
T ss_pred             HHHHHhhcHHHHHHHHHHHH--HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-----HH-H-HHHHHHH
Confidence            34444555678889999999  99999999999999999999999999999999999999987     22 2 1345677


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPN--DTEESIWCFLCEAQLYGV  222 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~--d~e~~~~~~l~~a~Lg~~  222 (233)
                      .++|.++..+|++++|++.|+++++++|+  +++.+..++.++..+|+.
T Consensus       121 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          121 LKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999  889888899888888877

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.61  E-value=3.1e-15  Score=117.74  Aligned_cols=105  Identities=9%  Similarity=0.028  Sum_probs=91.6

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-..+|...+..++  +++|+++.+|..+|.++..+|++++|++.|++|++++|+++     ..++        
T Consensus        29 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~--------   93 (148)
T 2vgx_A           29 FNQYQSGXYEDAHXVFQALC--VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP-----RFPF--------   93 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-----HHHH--------
T ss_pred             HHHHHcCChHHHHHHHHHHH--HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----hHHH--------
Confidence            44555666778999999999  89999999999999999999999999999999999999998     4444        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  216 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~  216 (233)
                       ++|.++..+|++++|++.|+++++++|++++...+...+.
T Consensus        94 -~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  133 (148)
T 2vgx_A           94 -HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS  133 (148)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence             4999999999999999999999999999887655544443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.58  E-value=5.3e-15  Score=113.40  Aligned_cols=101  Identities=11%  Similarity=0.081  Sum_probs=88.3

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+-+.+-..+|...|++++  +++|+++.+|.++|.++..+|+|++|+++|++||+++|++.     ..+.  .++.++.
T Consensus        17 ~~~~~~~~~~A~~~y~~Al--~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~--~~a~~~~   87 (127)
T 4gcn_A           17 AAYKQKDFEKAHVHYDKAI--ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-----ADYK--LIAKAMS   87 (127)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CCHH--HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-----hhhH--HHHHHHH
Confidence            3455566788999999999  99999999999999999999999999999999999999887     2222  2456788


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e  207 (233)
                      ++|.++..+|++++|++.|+++++.+|+ ++
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~  117 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PE  117 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HH
Confidence            9999999999999999999999999985 54

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.58  E-value=9.6e-15  Score=111.33  Aligned_cols=90  Identities=10%  Similarity=0.077  Sum_probs=41.0

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      +.+-..+|...+..++  +++|+++.+|+.+|.++..+|++++|+..|++|++++|+++     ..++         ++|
T Consensus        29 ~~g~~~~A~~~~~~al--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~---------~la   92 (121)
T 1hxi_A           29 KLANLAEAALAFEAVC--QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI-----AVHA---------ALA   92 (121)
T ss_dssp             HTTCHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHH
T ss_pred             HcCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHH
Confidence            3333444444444444  44555555555555555555555555555555555555444     2222         245


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      .++..+|++++|++.|+++++++|++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           93 VSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            55555555555555555555555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.8e-14  Score=115.68  Aligned_cols=113  Identities=15%  Similarity=0.101  Sum_probs=101.9

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~  183 (233)
                      ...+...+..++  +.+|+++.++..+|.++...|++++|++.|+++++++|+++     ..+.         ++|.++.
T Consensus       121 ~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~l~~~~~  184 (258)
T 3uq3_A          121 AEKELKKAEAEA--YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA-----RGYS---------NRAAALA  184 (258)
T ss_dssp             HHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHH
T ss_pred             HHHHHHHHHHHH--HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH-----HHHH---------HHHHHHH
Confidence            345666666666  68999999999999999999999999999999999999987     3433         5999999


Q ss_pred             HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus       185 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.58  E-value=3.3e-14  Score=118.24  Aligned_cols=124  Identities=8%  Similarity=0.020  Sum_probs=108.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      ..+-+.+-...|...+..++  +.+|++   +.+++.+|.+++.+|++++|+..|+++++++|+++     ..      .
T Consensus        23 ~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~------~   89 (261)
T 3qky_A           23 MEFYNQGKYDRAIEYFKAVF--TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-----RV------P   89 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHG--GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----TH------H
T ss_pred             HHHHHhCCHHHHHHHHHHHH--HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-----hh------H
Confidence            44555566788999999999  889999   99999999999999999999999999999999876     11      1


Q ss_pred             hhhhhhHHHHHH--------cCCcHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHH
Q 026773          173 GIILKKLIRVSH--------FNRFEEGAEQFRIDVAQNPNDTEES-----------------IWCFLCEAQLYGVDEARN  227 (233)
Q Consensus       173 ~a~~~rG~al~~--------lGryeeAi~~f~kAL~lnP~d~e~~-----------------~~~~l~~a~Lg~~dEA~~  227 (233)
                      .+++.+|.+++.        +|++++|++.|+++++.+|+++...                 ++.+.++..+|++++|+.
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            245679999999        9999999999999999999987665                 677888999999999999


Q ss_pred             HHHhh
Q 026773          228 RFLEA  232 (233)
Q Consensus       228 ~~l~~  232 (233)
                      .|.++
T Consensus       170 ~~~~~  174 (261)
T 3qky_A          170 TYEAV  174 (261)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.58  E-value=6.7e-14  Score=100.49  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=106.1

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +.+.+-..+|...+..++  +.+|+++.++..+|.++...|++++|+..|+++++++|+++     ..+.         .
T Consensus        11 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~   74 (136)
T 2fo7_A           11 YYKQGDYDEAIEYYQKAL--ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWY---------N   74 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH---------H
T ss_pred             HHHcCcHHHHHHHHHHHH--HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch-----HHHH---------H
Confidence            444455678888999888  78999999999999999999999999999999999999877     3333         5


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|.++...|++++|++.++++++.+|++++.+...+.++...|++++|...+.++
T Consensus        75 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            8999999999999999999999999999988888888899999999999988764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.58  E-value=2.4e-14  Score=104.47  Aligned_cols=110  Identities=10%  Similarity=0.125  Sum_probs=92.9

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-...|...+.+++  +.+|+++.++..+|.++..+|++++|+..|+++++++|+++     ..++        
T Consensus        24 ~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~--------   88 (133)
T 2lni_A           24 NECFQKGDYPQAMKHYTEAI--KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI-----KGYT--------   88 (133)
T ss_dssp             HHHHHTTCSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch-----HHHH--------
Confidence            44555566677888999988  88999999999999999999999999999999999999877     3333        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG  221 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~  221 (233)
                       ++|.++..+|++++|++.|+++++++|++.+.+.+.+.++..+|+
T Consensus        89 -~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           89 -RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             -HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence             589999999999999999999999999988887777777776653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.57  E-value=7e-15  Score=142.46  Aligned_cols=116  Identities=10%  Similarity=-0.001  Sum_probs=105.1

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      +.+-..+|...+++++  +++|+++.+|+++|.++..+|++++|+++|++|++++|+++     ..++         ++|
T Consensus       445 ~~g~~~~A~~~~~~al--~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~---------~lg  508 (681)
T 2pzi_A          445 DLGDVAKATRKLDDLA--ERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL-----APKL---------ALA  508 (681)
T ss_dssp             HHTCHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS-----HHHH---------HHH
T ss_pred             hcCCHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHH---------HHH
Confidence            3344566777788888  89999999999999999999999999999999999999998     4433         599


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++..+|++++ ++.|+++++++|++++.+.+++.++..+|++++|...+.++
T Consensus       509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            99999999999 99999999999999999999999999999999999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.57  E-value=2.4e-15  Score=117.26  Aligned_cols=107  Identities=6%  Similarity=0.061  Sum_probs=89.1

Q ss_pred             hHHHhccCcchHHHHHHHHhcccC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNN------------------NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l------------------~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~  157 (233)
                      ..+-+.+-+..|...|..++  ++                  +|.++.+|.++|.++..+|++++|+.++++||+++|++
T Consensus        19 ~~~~~~~~~~~A~~~y~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~   96 (162)
T 3rkv_A           19 NELFVQKDYKEAIDAYRDAL--TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN   96 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence            44555666677888888888  55                  77888999999999999999999999999999999998


Q ss_pred             CCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHH
Q 026773          158 KISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE-ESIWCFLCEAQ  218 (233)
Q Consensus       158 ~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e-~~~~~~l~~a~  218 (233)
                      +     ..++         ++|.++..+|++++|+++|+++++++|++++ ....+..|...
T Consensus        97 ~-----~a~~---------~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           97 E-----KALF---------RRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             H-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             h-----HHHH---------HHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            8     4444         4999999999999999999999999999984 33344444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=4.3e-14  Score=112.62  Aligned_cols=117  Identities=9%  Similarity=0.080  Sum_probs=100.8

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-...|...+..++    +| ++.+|.++|.++..+|++++|++.|++|++++|+++     ..+.         
T Consensus        15 ~~~~~~~~~~A~~~~~~a~----~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~---------   75 (213)
T 1hh8_A           15 LAADKKDWKGALDAFSAVQ----DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA-----VAYF---------   75 (213)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred             HHHHhCCHHHHHHHHHHHc----CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-----HHHH---------
Confidence            3344455566777777664    33 899999999999999999999999999999999887     3433         


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDT----------------EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~----------------e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|.++..+|++++|++.|++++++.|++.                +.+..++.++..+|++++|...+.++
T Consensus        76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            599999999999999999999999998877                88888999999999999999998764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.57  E-value=7.1e-14  Score=106.17  Aligned_cols=120  Identities=18%  Similarity=0.219  Sum_probs=106.8

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-...|...+..++  +++|+++.++..+|.++...|++++|++.|+++++++|+++     ..+.         
T Consensus        51 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------  114 (186)
T 3as5_A           51 AYVKTGAVDRGTELLERSL--ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF-----NVRF---------  114 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred             HHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH-----HHHH---------
Confidence            3344455677888999988  88999999999999999999999999999999999999887     3333         


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+|.++...|++++|++.++++++.+|+++..+...+.+...+|++++|...+.++
T Consensus       115 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          115 RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            59999999999999999999999999999998888999999999999999988764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.57  E-value=3.4e-14  Score=102.46  Aligned_cols=110  Identities=15%  Similarity=0.182  Sum_probs=94.7

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-...|...+..++  +++|+++.++..+|.++...|++++|+..++++++++|+++     ..++         
T Consensus        21 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------   84 (131)
T 2vyi_A           21 EQMKVENFEAAVHFYGKAI--ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS-----KAYG---------   84 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred             HHHHccCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH-----HHHH---------
Confidence            3344455677888999888  88999999999999999999999999999999999999887     3433         


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV  222 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~  222 (233)
                      .+|.++..+|++++|++.|+++++++|+++..+...+.+...+|++
T Consensus        85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            4999999999999999999999999999998888888888877764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.57  E-value=2.4e-14  Score=104.53  Aligned_cols=101  Identities=13%  Similarity=0.164  Sum_probs=93.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ...|.++.+|..+|.++...|++++|++.|+++++++|++.     ..+.         ++|.++...|++++|++.|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~la~~~~~~~~~~~A~~~~~~   75 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA-----KLYS---------NRAACYTKLLEFQLALKDCEE   75 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH-----HHHH---------HHHHHHTTTTCHHHHHHHHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHH---------HHHHHHHHhccHHHHHHHHHH
Confidence            35688999999999999999999999999999999999887     3333         599999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|+++..+..++.++..+|++++|...+.++
T Consensus        76 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  110 (133)
T 2lni_A           76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA  110 (133)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999899999999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.57  E-value=4.6e-14  Score=115.53  Aligned_cols=124  Identities=5%  Similarity=-0.087  Sum_probs=104.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+-+.+-...|...+..++  +++|+++.++..+|.++..+|++++|+..|+++++ .|.++     ...     ..++
T Consensus        11 ~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~-----~~~-----~~~~   77 (272)
T 3u4t_A           11 DFLFKNNNYAEAIEVFNKLE--AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT-----KAK-----SADF   77 (272)
T ss_dssp             HHHHTTTCHHHHHHHHHHHH--HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT-----TCC-----HHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch-----hHH-----HHHH
Confidence            34445556677888999998  88999999999999999999999999999999999 66555     221     1234


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++|.++..+|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  134 (272)
T 3u4t_A           78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ  134 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            569999999999999999999999999999988888888999999999999988765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.56  E-value=2.2e-14  Score=127.10  Aligned_cols=115  Identities=12%  Similarity=0.112  Sum_probs=102.9

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCc
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSRE---------------AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISG  161 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~---------------a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~  161 (233)
                      .+.+.+-...|...|.+++  +++|++               +.+|.++|.++..+|++++|++.|++||+++|+++   
T Consensus       156 ~~~~~g~~~~A~~~y~~Al--~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---  230 (336)
T 1p5q_A          156 VYFKEGKYKQALLQYKKIV--SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---  230 (336)
T ss_dssp             HHHHHTCHHHHHHHHHHHH--HHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred             HHHHCCCHHHHHHHHHHHH--HHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---
Confidence            3445556677888898888  889998               79999999999999999999999999999999988   


Q ss_pred             cchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773          162 KGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARN  227 (233)
Q Consensus       162 ~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~  227 (233)
                        ..++         ++|.++..+|++++|+++|+++++++|++++.+..++.++..+|+.++|..
T Consensus       231 --~a~~---------~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          231 --KGLS---------RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             --HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHH---------HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              3433         599999999999999999999999999999999999999999999999854

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.56  E-value=7.1e-15  Score=109.63  Aligned_cols=103  Identities=13%  Similarity=0.105  Sum_probs=88.1

Q ss_pred             cchHHHHHHHHhcccC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          104 IPSVSGIWDALTGGNN---NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l---~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      ..+|...+.+++  ++   +|+++.+|.++|.++..+|++++|++.|++|++++|+++     ..+.         ++|.
T Consensus         6 ~~~A~~~~~~al--~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~l~~   69 (117)
T 3k9i_A            6 EAQAVPYYEKAI--ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ-----ALRV---------FYAM   69 (117)
T ss_dssp             -CCCHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHH
T ss_pred             HHHHHHHHHHHH--HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-----HHHH---------HHHH
Confidence            366888999999  77   699999999999999999999999999999999999988     4444         4999


Q ss_pred             HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 026773          181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV  222 (233)
Q Consensus       181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~  222 (233)
                      ++..+|++++|++.|+++++++|++++...+........+..
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l  111 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL  111 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998655554444444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.56  E-value=1.9e-14  Score=112.10  Aligned_cols=107  Identities=11%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHH
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAE  193 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL--------dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~  193 (233)
                      ..+.++..+|..++..|+|++|+..|++||++        +|.++.    ..-.....+.+++++|.++..+|+|++|+.
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~nla~~~~~~~~~~~A~~   84 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE----WVELDRKNIPLYANMSQCYLNIGDLHEAEE   84 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH----HHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH----HHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            45789999999999999999999999999999        444320    000001123456789999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++++++|+++..++.++.|+..+|++++|...|.++
T Consensus        85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence            999999999999999999999999999999999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.56  E-value=2.9e-14  Score=116.26  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=66.4

Q ss_pred             ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      .+-...|...+.+++  +++|+++.+|..+|.++...|++++|++.|++|++++|+++     ..+.         ++|.
T Consensus        56 ~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~la~  119 (275)
T 1xnf_A           56 LGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-----YAHL---------NRGI  119 (275)
T ss_dssp             TTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----HHHH---------HHHH
T ss_pred             cccHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc-----HHHH---------HHHH
Confidence            334445555555555  55666666666666666666666666666666666666655     2222         3666


Q ss_pred             HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ++..+|++++|++.|+++++++|+++....+.+.+ ...|++++|...+.+
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A          120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            66666666666666666666666666554444444 333666666665543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.56  E-value=8.9e-14  Score=105.64  Aligned_cols=120  Identities=12%  Similarity=0.106  Sum_probs=106.7

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-...|...+..++  +.+|+++.++..+|.++...|++++|+..++++++++|+++     ..+.         
T Consensus        17 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------   80 (186)
T 3as5_A           17 SHAKAGRYSQAVMLLEQVY--DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV-----KVAT---------   80 (186)
T ss_dssp             HHHHHTCHHHHHHHHTTTC--CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred             HHHHhcCHHHHHHHHHHHH--HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHH---------
Confidence            3444555677888888887  88999999999999999999999999999999999999887     3333         


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+|.++...|++++|++.|+++++.+|+++..+...+.++..+|++++|...+.++
T Consensus        81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  136 (186)
T 3as5_A           81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA  136 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            59999999999999999999999999999998888889999999999999998764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=5.6e-14  Score=112.52  Aligned_cols=100  Identities=18%  Similarity=0.124  Sum_probs=51.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      +++|+++.++..+|.++..+|++++|++.|+++++++|+++     .         ++..+|.++...|++++|++.+++
T Consensus        85 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~---------~~~~~a~~~~~~~~~~~A~~~~~~  150 (243)
T 2q7f_A           85 ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG-----D---------LFYMLGTVLVKLEQPKLALPYLQR  150 (243)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH-----H---------HHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-----H---------HHHHHHHHHHHhccHHHHHHHHHH
Confidence            34444444444444444444444444444444444444433     1         122355556666666666666666


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +++++|++++.+...+.++...|++++|...+.+
T Consensus       151 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  184 (243)
T 2q7f_A          151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAA  184 (243)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6666665555555555555555666666555544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.55  E-value=3.5e-14  Score=122.08  Aligned_cols=119  Identities=16%  Similarity=0.192  Sum_probs=106.1

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      +.+.+-...|...+..++  +++|+  ++.+|..+|.++..+|++++|++.|+++++++|+++     ..+.        
T Consensus       187 ~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~--------  251 (365)
T 4eqf_A          187 PVDSSVLEGVKELYLEAA--HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-----SLWN--------  251 (365)
T ss_dssp             --CCHHHHHHHHHHHHHH--HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HhhhhhHHHHHHHHHHHH--HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH--------
Confidence            333445567888888888  88999  999999999999999999999999999999999987     3333        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       ++|.++..+|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus       252 -~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  307 (365)
T 4eqf_A          252 -RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA  307 (365)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             59999999999999999999999999999999999999999999999999998865

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.55  E-value=3.3e-15  Score=107.18  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      ++++|..+|.+++..|++++|++.|++|++++|+++     ..+.         ++|.++..+|++++|++.|+++++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP-----VGYS---------NKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHH---------HHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999987     3433         59999999999999999999999999


Q ss_pred             CCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773          203 PND------TEESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       203 P~d------~e~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                      |++      ...+..++.+...+|+.++|...+.
T Consensus        69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            998      7777888888888888877766554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=6.4e-14  Score=104.32  Aligned_cols=101  Identities=13%  Similarity=0.082  Sum_probs=66.9

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      ..+.+.+-...|...|..++  +++|++   +.+|..+|.++..+|++++|+..|+++++++|+++     ..++     
T Consensus        36 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~-----  103 (148)
T 2dba_A           36 NELFKCGDYGGALAAYTQAL--GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV-----KALY-----  103 (148)
T ss_dssp             HHHHTTTCHHHHHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH-----HHHH-----
T ss_pred             HHHHHhCCHHHHHHHHHHHH--HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH-----HHHH-----
Confidence            34444455566666777766  666766   67777777777777777777777777777777665     2323     


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC  212 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~  212 (233)
                          ++|.++..+|++++|++.|+++++++|++.+.+.+.
T Consensus       104 ----~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  139 (148)
T 2dba_A          104 ----RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL  139 (148)
T ss_dssp             ----HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             ----HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence                367777777777777777777777777766644433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=9.4e-14  Score=98.70  Aligned_cols=100  Identities=15%  Similarity=0.140  Sum_probs=70.9

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-...|...+..++  +.+|+++.++..+|.++..+|++++|+..++++++++|+++     ..++         
T Consensus        13 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------   76 (118)
T 1elw_A           13 KALSVGNIDDALQCYSEAI--KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-----KGYS---------   76 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred             HHHHcccHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH-----HHHH---------
Confidence            3444555666777777777  67777777777777777777777777777777777777766     2322         


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC  212 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~  212 (233)
                      ++|.++..+|++++|++.|+++++++|+++..+...
T Consensus        77 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  112 (118)
T 1elw_A           77 RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL  112 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            477777777777777777777777777777654443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.54  E-value=2.7e-15  Score=124.97  Aligned_cols=100  Identities=8%  Similarity=0.007  Sum_probs=84.5

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCC
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSR-------EAV-----VAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPR  156 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~-------~a~-----Ay~~RG~a~~~lGdyeeAIadfdkAIeL-------dP~  156 (233)
                      ..+-+.+-...|...|++++  +++|+       +..     +|.++|.++..+|+|++|+++|++||++       +|+
T Consensus        19 ~~l~~~g~~eeAi~~Y~kAL--~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd   96 (159)
T 2hr2_A           19 QRQLVAGEYDEAAANCRRAM--EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD   96 (159)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH--HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHHHHCCCHHHHHHHHHHHH--hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence            33444556678999999999  88888       444     9999999999999999999999999999       998


Q ss_pred             CCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773          157 QKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE  207 (233)
Q Consensus       157 ~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e  207 (233)
                      ++     ..+     +.+++++|.++..+|+++||+++|+++++++|+|..
T Consensus        97 ~~-----~A~-----~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           97 EG-----KLW-----ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HH-----HHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             hH-----HHH-----HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            87     333     012246999999999999999999999999998864

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.54  E-value=4.9e-14  Score=101.62  Aligned_cols=101  Identities=19%  Similarity=0.193  Sum_probs=92.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      +.+|+++.++..+|.++...|++++|+..|+++++++|+++     ..+.         ++|.++...|++++|++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~   71 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA-----VYFC---------NRAAAYSKLGNYAGAVQDCER   71 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-----HHHH---------HHHHHHHHhhchHHHHHHHHH
Confidence            46788899999999999999999999999999999999887     3433         599999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|+++..+...+.++..+|++++|...+.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  106 (131)
T 2vyi_A           72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA  106 (131)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999888999999999999999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=1.2e-13  Score=112.57  Aligned_cols=113  Identities=13%  Similarity=0.079  Sum_probs=102.0

Q ss_pred             cchHHHHHHHHhcccC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          104 IPSVSGIWDALTGGNN----NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l----~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      ...|...+.+++  +.    +|+++.+|..+|.++...|++++|+..|+++++++|+++     ..+.         ++|
T Consensus        21 ~~~A~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~la   84 (275)
T 1xnf_A           21 QEVILARMEQIL--ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP-----EVFN---------YLG   84 (275)
T ss_dssp             HHHHHHHHHHHH--TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHH
T ss_pred             HHHHHHHHHHHH--hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH-----HHHH---------HHH
Confidence            367888999988  44    467899999999999999999999999999999999987     3333         599


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++...|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus        85 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  137 (275)
T 1xnf_A           85 IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF  137 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.54  E-value=1.7e-14  Score=109.97  Aligned_cols=91  Identities=7%  Similarity=0.075  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      ..++.+|.++...|++++|+..|++|++++|+++     ..++         .+|.++..+|++++|++.|+++++++|+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~---------~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE-----EAWR---------SLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3578999999999999999999999999999998     4444         4999999999999999999999999998


Q ss_pred             CHH---HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          205 DTE---ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       205 d~e---~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++   .   ++.++..+|++++|+..+.++
T Consensus        84 ~~~~~~~---la~~~~~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           84 DIAVHAA---LAVSHTNEHNANAALASLRAW  111 (121)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHH---HHHHHHHcCCHHHHHHHHHHH
Confidence            753   5   445677889999999988764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.53  E-value=7.2e-15  Score=130.25  Aligned_cols=126  Identities=11%  Similarity=0.157  Sum_probs=102.3

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccc-hhhhhhhhhhhhhhhHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKG-AYRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~-~y~~~~~~~~a~~~rG~al~  183 (233)
                      ..|...|..++  +++|+++.+|..+|.+++.+|++++|++.|++|++++|++...... ..-.....+.+++++|.++.
T Consensus       130 ~~A~~~~~~a~--~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  207 (336)
T 1p5q_A          130 EKAKESWEMNS--EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL  207 (336)
T ss_dssp             ECCCCGGGCCH--HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhcCCH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555  6789999999999999999999999999999999999998410000 00000011345678999999


Q ss_pred             HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+|++++|++.|+++++++|+++..++.++.++..+|++++|+..|.++
T Consensus       208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  256 (336)
T 1p5q_A          208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV  256 (336)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999865

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.53  E-value=1.9e-13  Score=97.72  Aligned_cols=106  Identities=15%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-...|...+.+++  +.+|+++.++..+|.++...|++++|+..|+++++++|+++     ..+.         
T Consensus        18 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------   81 (125)
T 1na0_A           18 AYYKQGDYDEAIEYYQKAL--ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAWY---------   81 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred             HHHHcCCHHHHHHHHHHHH--HHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH-----HHHH---------
Confidence            3444445556666666666  56666677777777777777777777777777777766655     2222         


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  218 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~  218 (233)
                      ++|.++...|++++|++.|+++++++|++++.+..++.+...
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            366667777777777777777777777666655555444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.53  E-value=1.2e-13  Score=108.35  Aligned_cols=106  Identities=11%  Similarity=0.090  Sum_probs=82.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-------------------------hhhhhhh
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-------------------------SIVGIIL  176 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-------------------------~~~~a~~  176 (233)
                      +++.+|+++|.++..+|++++|++.|++||+++|+++     ..+...                         ....++.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   77 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV-----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY   77 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence            5789999999999999999999999999999999998     333320                         1155666


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+|.++...+++++|++.++++++++|++++.+..++.++.++|++++|+..|.++
T Consensus        78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  133 (184)
T 3vtx_A           78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT  133 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            77777777777777777777777777777777777777777788888887777653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=1.8e-13  Score=109.47  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=108.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-...|...+..++  +++|+++.++..+|.++...|++++|+..++++++++|+++     ..+.        
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~--------  163 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKAL--RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT-----EARF--------  163 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHhccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH-----HHHH--------
Confidence            33444556678888999988  88999999999999999999999999999999999999887     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       .+|.++...|++++|++.|+++++.+|+++..+..++.++..+|++++|...+.++
T Consensus       164 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          164 -QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             -HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence             59999999999999999999999999999998888999999999999999998764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.52  E-value=1.3e-13  Score=119.79  Aligned_cols=110  Identities=13%  Similarity=0.029  Sum_probs=61.7

Q ss_pred             hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF  185 (233)
Q Consensus       106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l  185 (233)
                      .|...+..++  +++|+++.+|..+|.++...|++++|++.|+++++++|+++     .         ++.++|.++...
T Consensus       255 ~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~---------~~~~l~~~~~~~  318 (388)
T 1w3b_A          255 LAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA-----D---------SLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHH--HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH-----H---------HHHHHHHHHHTT
T ss_pred             HHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH-----H---------HHHHHHHHHHHc
Confidence            3444444444  44455555555555555555555555555555555554444     1         223466666666


Q ss_pred             CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          186 NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       186 GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      |++++|++.|+++++++|++++.+..++.++.++|++++|...+.+
T Consensus       319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.52  E-value=1.2e-13  Score=119.98  Aligned_cols=123  Identities=14%  Similarity=0.036  Sum_probs=67.1

Q ss_pred             cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------------
Q 026773          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------------  169 (233)
Q Consensus       102 ~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------------  169 (233)
                      +-..+|...+.+++  +++|+++.+|..+|.++...|++++|++.|+++++++|++.     ..+...            
T Consensus        81 g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~  153 (388)
T 1w3b_A           81 GQLQEAIEHYRHAL--RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-----CVRSDLGNLLKALGRLEE  153 (388)
T ss_dssp             TCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-----HHHHHHHHHHHTTSCHHH
T ss_pred             CCHHHHHHHHHHHH--HcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHccCHHH
Confidence            33444555555555  45555555555555555555555555555555555555544     221110            


Q ss_pred             -------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          170 -------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       170 -------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                                   ....++.++|.++...|++++|++.|+++++++|++++.+..++.++...|++++|...+.+
T Consensus       154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  228 (388)
T 1w3b_A          154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR  228 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                         00112334666666666666666666666666666666666666666666666666666554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.52  E-value=6.1e-14  Score=112.65  Aligned_cols=117  Identities=14%  Similarity=0.118  Sum_probs=101.4

Q ss_pred             chhHHHhccCcchHHHHHHHHhcccCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773           94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREA----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (233)
Q Consensus        94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a----------------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~  157 (233)
                      ....+-+.+-...|...|..++  ++.|+++                .+|.++|.++..+|++++|+.+|++|++++|++
T Consensus        44 ~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  121 (198)
T 2fbn_A           44 EGNEFFKKNEINEAIVKYKEAL--DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  121 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH--HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH--HHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence            3345556667778999999999  8888887                999999999999999999999999999999988


Q ss_pred             CCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773          158 KISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  226 (233)
Q Consensus       158 ~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~  226 (233)
                      +     ..++         ++|.++..+|++++|++.|+++++++|++++.+...+.|...+++.+++.
T Consensus       122 ~-----~~~~---------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          122 V-----KALY---------KLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             H-----HHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             H-----HHHH---------HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            7     3444         59999999999999999999999999999998888888888888777665

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.52  E-value=1.6e-13  Score=101.07  Aligned_cols=102  Identities=11%  Similarity=0.051  Sum_probs=73.7

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a---~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      ..+.+.+-...|...+..++  +.+|+++   .+++.+|.++..+|++++|+..|+++++++|+++      ..     .
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~-----~   76 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFL--ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD------KA-----A   76 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST------TH-----H
T ss_pred             HHHHHhCCHHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc------cc-----H
Confidence            33444555666777777777  6778777   6888888888888888888888888888888765      11     2


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESI  210 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~  210 (233)
                      .+++++|.++..+|++++|++.|+++++.+|+++....
T Consensus        77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  114 (129)
T 2xev_A           77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV  114 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence            35667788888888888888888888888887775433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.51  E-value=4.1e-13  Score=111.57  Aligned_cols=120  Identities=13%  Similarity=-0.057  Sum_probs=104.5

Q ss_pred             HHHhcc-CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           97 TFTRRL-FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        97 ~~~r~~-~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      .+.+.+ ....|...+..++  +++|+++.+|..+|.++...|++++|+..|+++++++|++.     ..++        
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~--------  163 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKAT--TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH-----LPML--------  163 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHH--TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-----HHHH--------
T ss_pred             HHHHhhhhHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-----HHHH--------
Confidence            344444 5567888888888  88999999999999999999999999999999999999887     3333        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       .+|.++...|++++|++.|+++++++|+++..+..++.++..+|++++|...+.++
T Consensus       164 -~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          164 -YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence             48999999999999999999999999999998888899999999999999988764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.51  E-value=1.9e-14  Score=119.71  Aligned_cols=96  Identities=19%  Similarity=0.313  Sum_probs=84.4

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCCCCccchhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV----------VGSVAEFDKAIELDPRQKISGKGAYR  166 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdy----------eeAIadfdkAIeLdP~~~~~~~~~y~  166 (233)
                      .+.|-..+..|...+..++  +++|+++++|+++|.++..+|++          ++||..|++||++||++.     ..+
T Consensus        11 ~~~r~~~feeA~~~~~~Ai--~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~-----~A~   83 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTY--KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD-----EAV   83 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHH
T ss_pred             HHHHHhHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH-----HHH
Confidence            3455556678899999999  99999999999999999999875          599999999999999998     455


Q ss_pred             hhhhhhhhhhhhHHHHHHcC-----------CcHHHHHHHHHHHHcCCCCHHH
Q 026773          167 FTISIVGIILKKLIRVSHFN-----------RFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       167 ~~~~~~~a~~~rG~al~~lG-----------ryeeAi~~f~kAL~lnP~d~e~  208 (233)
                      |+         +|.+|..+|           ++++|+++|++|++++|++...
T Consensus        84 ~~---------LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           84 WC---------IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HH---------HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            54         999999885           8999999999999999998754

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.51  E-value=2.3e-13  Score=110.48  Aligned_cols=128  Identities=10%  Similarity=-0.031  Sum_probs=85.3

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-------
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-------  169 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-------  169 (233)
                      .+...+-...|...+..++  +++|+++.++..+|.++...|++++|++.|+++++++|++.     ..+...       
T Consensus        46 ~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~  118 (252)
T 2ho1_A           46 GYLQRGNTEQAKVPLRKAL--EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA-----RVLNNYGGFLYEQ  118 (252)
T ss_dssp             HHHHTTCTGGGHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHT
T ss_pred             HHHHcCChHHHHHHHHHHH--hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH-----HHHHHHHHHHHHH
Confidence            3444555666777887777  67788888888888888888888888888888888888765     222210       


Q ss_pred             --------------h------hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          170 --------------S------IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       170 --------------~------~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                                    .      ...++..+|.++...|++++|++.|+++++++|++++.+..++.++..+|++++|...+
T Consensus       119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  198 (252)
T 2ho1_A          119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY  198 (252)
T ss_dssp             TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                          0      12344556666666666666666666666666666666666666666666666666665


Q ss_pred             Hh
Q 026773          230 LE  231 (233)
Q Consensus       230 l~  231 (233)
                      .+
T Consensus       199 ~~  200 (252)
T 2ho1_A          199 DL  200 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.51  E-value=2e-13  Score=116.11  Aligned_cols=117  Identities=20%  Similarity=0.171  Sum_probs=106.1

Q ss_pred             hccCcchHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +.+-...|...+..++  +++|+  ++.++..+|.++...|++++|+..|+++++++|+++     ..+.         +
T Consensus       193 ~~~~~~~A~~~~~~a~--~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~---------~  256 (368)
T 1fch_A          193 SDSLFLEVKELFLAAV--RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY-----LLWN---------K  256 (368)
T ss_dssp             HHHHHHHHHHHHHHHH--HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------H
T ss_pred             hcccHHHHHHHHHHHH--HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH-----HHHH---------H
Confidence            4445577888888888  88999  899999999999999999999999999999999887     3333         5


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|.++..+|++++|++.|+++++++|+++..+..++.++.++|++++|...+.++
T Consensus       257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  311 (368)
T 1fch_A          257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA  311 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.51  E-value=3.7e-13  Score=105.83  Aligned_cols=119  Identities=16%  Similarity=0.057  Sum_probs=73.2

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l-GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      +.+-...|...+..++  +++|+++.++..+|.++... |++++|+..|+++++ .|.++.     .      ..++.++
T Consensus        54 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~-----~------~~~~~~l  119 (225)
T 2vq2_A           54 YLKVNDKAQESFRQAL--SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT-----P------YIANLNK  119 (225)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC-----H------HHHHHHH
T ss_pred             HcCChHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc-----h------HHHHHHH
Confidence            3334445555555555  55566666666666666666 666666666666666 332220     0      1233457


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |.++...|++++|++.|+++++.+|+++..+...+.++..+|++++|...+.++
T Consensus       120 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  173 (225)
T 2vq2_A          120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY  173 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777777777777777777777777777776666666777777777777766553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.51  E-value=7.2e-14  Score=103.97  Aligned_cols=108  Identities=11%  Similarity=0.091  Sum_probs=90.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-...|...|..++  +++|+++.+|.++|.++..+|++++|+..|+++++++|+++     ..++        
T Consensus        17 ~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~--------   81 (137)
T 3q49_B           17 NRLFVGRKYPEAAACYGRAI--TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-----KAHF--------   81 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHhCcHHHHHHHHHHHH--hhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH-----HHHH--------
Confidence            44455556678999999999  89999999999999999999999999999999999999987     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHc
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPN-----DTEESIWCFLCEAQL  219 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~-----d~e~~~~~~l~~a~L  219 (233)
                       ++|.++..+|++++|++.|+++++++|+     +.+.......+..+.
T Consensus        82 -~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           82 -FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence             5999999999999999999999999998     555444444444333

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.50  E-value=2.9e-13  Score=125.89  Aligned_cols=121  Identities=9%  Similarity=-0.038  Sum_probs=108.9

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-..+|...+.+++  +++|+++.+|.++|.++..+|++++|++.|++|++++|+++     ..+.        
T Consensus        31 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~--------   95 (568)
T 2vsy_A           31 DAELGMGDTTAGEMAVQRGL--ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP-----GIAL--------   95 (568)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH--TTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-----HHHH--------
Confidence            44555566788999999999  89999999999999999999999999999999999999987     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL---YGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L---g~~dEA~~~~l~~  232 (233)
                       ++|.++..+|++++|++.|+++++++|++++.+..++.++..+   |+.++|...+.++
T Consensus        96 -~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           96 -WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence             5999999999999999999999999999999988899999999   9999999988764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.50  E-value=1.2e-13  Score=128.45  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=91.3

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      ++|...+.+++  +++|+++.+|..+|.++..+|++++|++.|++|++++|+++     ..+.         ++|.++..
T Consensus         6 ~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~   69 (568)
T 2vsy_A            6 PRELLQLRAAV--RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP-----EAVA---------RLGRVRWT   69 (568)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH-----HHHH---------HHHHHHHH
T ss_pred             HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHH
Confidence            56778888888  89999999999999999999999999999999999999987     3433         59999999


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus        70 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  117 (568)
T 2vsy_A           70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA  117 (568)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.50  E-value=6.2e-14  Score=129.54  Aligned_cols=118  Identities=14%  Similarity=0.169  Sum_probs=100.5

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCC
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---------------AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKIS  160 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---------------a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~  160 (233)
                      ..+-+.+-...|...|.+++  +++|++               +.+|.++|.++..+|+|++|+.+|++||+++|+++  
T Consensus       276 ~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--  351 (457)
T 1kt0_A          276 TVYFKGGKYMQAVIQYGKIV--SWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE--  351 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--
T ss_pred             HHHHhCCCHHHHHHHHHHHH--HHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--
Confidence            34445556778888999998  889998               79999999999999999999999999999999988  


Q ss_pred             ccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          161 GKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       161 ~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                         ..++         ++|.++..+|++++|+++|+++++++|++.+.+..++.++..+++.++|...+
T Consensus       352 ---~a~~---------~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~  408 (457)
T 1kt0_A          352 ---KGLY---------RRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI  408 (457)
T ss_dssp             ---HHHH---------HHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHH---------HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4444         49999999999999999999999999999999888999999999988887543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.50  E-value=4.6e-13  Score=111.24  Aligned_cols=128  Identities=10%  Similarity=0.024  Sum_probs=102.1

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +.+.+-...|...+..++  +++|+++.++..+|.++..+|++++|+..|++++++.|....     .........++.+
T Consensus       169 ~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~  241 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQAL--SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN-----EVTVDKWEPLLNN  241 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC-----SCTTTTCCHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc-----cccccHHHHHHHH
Confidence            334445566777777777  788888888888888888888898898888888888754331     0000011234557


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|.++..+|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus       242 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.50  E-value=1.9e-13  Score=117.76  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      |+++.++..+|.+++..|++++|++.|++|++++|+++     .++.         ++|.++..+|++++|+++|+++++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~la~~~~~~~~~~~A~~~~~~al~   66 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYT---------NRALCYLKMQQPEQALADCRRALE   66 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH-----HHHH---------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555444     2222         355555555555555555555555


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      ++|+++..+..++.++..+|++++|...|.+
T Consensus        67 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQR   97 (281)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555555555555555555555554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.50  E-value=1.9e-13  Score=117.42  Aligned_cols=130  Identities=9%  Similarity=-0.045  Sum_probs=106.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-------
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT-------  168 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~-------  168 (233)
                      ..+.+.+-...|...+.+++  +++|+++.+|..+|.++..+|++++|+..|+++++++|++..     .+..       
T Consensus       107 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~  179 (365)
T 4eqf_A          107 ITQAENENEQAAIVALQRCL--ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY-----LVKNKKGSPGL  179 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHC-----C----------
T ss_pred             HHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchH-----HHhhhccchHH
Confidence            44455556677888888888  788999999999999999999999999999999988887541     1100       


Q ss_pred             ----------------------------hh--hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773          169 ----------------------------IS--IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  218 (233)
Q Consensus       169 ----------------------------~~--~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~  218 (233)
                                                  +.  -..++.++|.++..+|++++|++.|+++++++|+++..+..++.++..
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  259 (365)
T 4eqf_A          180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN  259 (365)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                        00  256788899999999999999999999999999999988888999999


Q ss_pred             cCCHHHHHHHHHhh
Q 026773          219 LYGVDEARNRFLEA  232 (233)
Q Consensus       219 Lg~~dEA~~~~l~~  232 (233)
                      +|++++|+..+.++
T Consensus       260 ~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          260 GDRSEEAVEAYTRA  273 (365)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            99999999988764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.49  E-value=3.9e-13  Score=95.44  Aligned_cols=97  Identities=14%  Similarity=0.154  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      +.+.++..+|.++...|++++|+..|+++++++|+++     ..++         ++|.++...|++++|++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH-----VLYS---------NRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-----HHHH---------HHHHHHHhhccHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999987     3433         5999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++++.+...+.++..+|++++|...+.++
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEG   98 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999899999999999999999998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.49  E-value=4.5e-13  Score=101.51  Aligned_cols=96  Identities=11%  Similarity=0.066  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      .+.+|..+|.+++..|++++|+..|+++++++|+++     ..+.         ++|.++..+|++++|++.|+++++++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~a~~~~   77 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYG---------NRSLAYLRTECYGYALGDATRAIELD   77 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            478899999999999999999999999999999887     3433         59999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          203 PNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       203 P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |++++.+...+.++..+|++++|...+.++
T Consensus        78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           78 KKYIKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999999999999999999998764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.49  E-value=1.3e-13  Score=112.86  Aligned_cols=107  Identities=10%  Similarity=0.090  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------hhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------SIVGIILKKLIRVSHFNRFEEGAEQF  195 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------~~~~a~~~rG~al~~lGryeeAi~~f  195 (233)
                      .+++.+..+|..++..|++++|++.|+++++++|+++.    .+++..      ....+..++|.++..+|++++|++.|
T Consensus         2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE----MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH----HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            36788999999999999999999999999999998872    222200      00112233899999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          196 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       196 ~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++++|++++.+..++.++..+|++++|...|.++
T Consensus        78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  114 (208)
T 3urz_A           78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI  114 (208)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3.4e-13  Score=100.37  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ..+|.++.++..+|..++..|++++|+..|+++++++|++..   ...        ++.++|.++..+|++++|++.|++
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~--------~~~~~a~~~~~~~~~~~A~~~~~~   90 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---QAV--------LHRNRAACHLKLEDYDKAETEASK   90 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---HHH--------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---HHH--------HHHHHHHHHHHHccHHHHHHHHHH
Confidence            577999999999999999999999999999999999998620   001        234699999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|+++..+..++.++..+|++++|...+.++
T Consensus        91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A           91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999999999998764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.49  E-value=2.5e-14  Score=132.25  Aligned_cols=126  Identities=10%  Similarity=0.143  Sum_probs=102.7

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccch-hhhhhhhhhhhhhhHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGA-YRFTISIVGIILKKLIRVS  183 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~-y~~~~~~~~a~~~rG~al~  183 (233)
                      ..|...|..++  +.+|+++.+|..+|.+++.+|+|++|+..|++||+++|++....++. .-.....+.+++++|.++.
T Consensus       251 ~~A~~~~~~~~--~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  328 (457)
T 1kt0_A          251 EKAKESWEMDT--KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL  328 (457)
T ss_dssp             ECCCCGGGSCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchhhcCH--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666555  67789999999999999999999999999999999999884100000 0000011346678999999


Q ss_pred             HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+|+|++|+++|+++++++|+++..++.++.|+..+|++++|+..|.++
T Consensus       329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a  377 (457)
T 1kt0_A          329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV  377 (457)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999875

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.49  E-value=5.3e-13  Score=110.76  Aligned_cols=114  Identities=17%  Similarity=0.151  Sum_probs=104.1

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      -...|...+..++  +.+|+++.++..+|.++...|++++|++.++++++++|+++     ..+.         ++|.++
T Consensus       153 ~~~~A~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~l~~~~  216 (327)
T 3cv0_A          153 EYRECRTLLHAAL--EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA-----QLWN---------KLGATL  216 (327)
T ss_dssp             HHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHH
T ss_pred             cHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH-----HHHH---------HHHHHH
Confidence            4467788888888  88999999999999999999999999999999999999887     3333         599999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ...|++++|++.|+++++++|++++.+...+.++..+|++++|...+.++
T Consensus       217 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  266 (327)
T 3cv0_A          217 ANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA  266 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999999999999999999999888999999999999999998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.49  E-value=7.1e-13  Score=94.71  Aligned_cols=101  Identities=20%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          118 NNNSRE-AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       118 ~l~P~~-a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      +++|.+ +.+|..+|.++...|++++|++.|+++++++|++.     ..++         .+|.++...|++++|++.|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~la~~~~~~~~~~~A~~~~~   67 (125)
T 1na0_A            2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAWY---------NLGNAYYKQGDYDEAIEYYQ   67 (125)
T ss_dssp             -----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH-----HHHH---------HHHHHHHHhCCHHHHHHHHH
Confidence            467776 89999999999999999999999999999999877     3433         59999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          197 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       197 kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++++++|+++..+...+.++..+|++++|...+.++
T Consensus        68 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999998888889999999999999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.48  E-value=1.8e-13  Score=98.87  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      |..+.+|..+|.++...|++++|+..|+++++++|+++     ..+.         ++|.++...|++++|++.|+++++
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~la~~~~~~~~~~~A~~~~~~~~~   66 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM-----TYIT---------NQAAVYFEKGDYNKCRELCEKAIE   66 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-----HHHH---------HHHHHHHHhccHHHHHHHHHHHHh
Confidence            34578999999999999999999999999999999887     3333         599999999999999999999999


Q ss_pred             cCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          201 QNPND-------TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       201 lnP~d-------~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|++       +..+...+.++..+|++++|...+.++
T Consensus        67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99877       777788888899999999999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.48  E-value=2.3e-13  Score=115.75  Aligned_cols=121  Identities=15%  Similarity=0.073  Sum_probs=106.7

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ...+.+.+-..+|...+..++  +++|+++.+|..+|.++..+|++++|++.|+++++++|+++     ..+.       
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~-------  289 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAAL--SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI-----RSRY-------  289 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHH-------
Confidence            344555566778888888888  88999999999999999999999999999999999999887     3433       


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPND-----------TEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d-----------~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                        ++|.++..+|++++|++.|+++++++|++           +..+..++.++..+|+.++|...+.+
T Consensus       290 --~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          290 --NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             --HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             --HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence              59999999999999999999999999998           78888888999999999999987653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.48  E-value=1e-13  Score=128.27  Aligned_cols=119  Identities=12%  Similarity=0.054  Sum_probs=106.5

Q ss_pred             HHHhccCc-chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           97 TFTRRLFI-PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        97 ~~~r~~~~-~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      .+.+.+-. .+|...+.+++  +++|+++++|..+|.++..+|++++|++.|++|++++|+ +     ..+.        
T Consensus       111 ~~~~~g~~~~~A~~~~~~al--~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~~~--------  174 (474)
T 4abn_A          111 ALNVTPDYSPEAEVLLSKAV--KLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K-----VSLQ--------  174 (474)
T ss_dssp             HHTSSSSCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H-----HHHH--------
T ss_pred             HHHhccccHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H-----HHHH--------
Confidence            34444445 78999999999  899999999999999999999999999999999999998 4     2333        


Q ss_pred             hhhHHHHHHc---------CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHF---------NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL--------YGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~l---------GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L--------g~~dEA~~~~l~~  232 (233)
                       ++|.++..+         |++++|++.|+++++++|+++..+..++.++..+        |++++|...|.++
T Consensus       175 -~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a  247 (474)
T 4abn_A          175 -NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA  247 (474)
T ss_dssp             -HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence             599999999         9999999999999999999999999999999888        9999999998764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.48  E-value=6.2e-13  Score=104.54  Aligned_cols=122  Identities=8%  Similarity=0.012  Sum_probs=99.3

Q ss_pred             hHHHhc-cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           96 PTFTRR-LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        96 ~~~~r~-~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ..+.+. +-...|...+..++....+|.++.++..+|.++...|++++|++.|+++++++|+++     ..+.       
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~-------  151 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP-----PAFK-------  151 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH-------
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-----hHHH-------
Confidence            344555 666778888888882116677889999999999999999999999999999999877     3433       


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNP-NDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP-~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                        .+|.++...|++++|++.++++++++| ++++.+.....+....|+.++|...+..
T Consensus       152 --~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  207 (225)
T 2vq2_A          152 --ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ  207 (225)
T ss_dssp             --HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence              489999999999999999999999999 8888765556667788999988877654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.47  E-value=4.1e-13  Score=111.38  Aligned_cols=119  Identities=8%  Similarity=0.086  Sum_probs=105.0

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +.+.+-...|...+..++  +++|+++.+|..+|.++...|++++|++.|+++++++|+++     ..++         +
T Consensus       182 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~  245 (327)
T 3cv0_A          182 YNLSNNYDSAAANLRRAV--ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV-----RVMY---------N  245 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------H
T ss_pred             HHHhccHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHH---------H
Confidence            344455677788888888  88999999999999999999999999999999999999887     3434         4


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPN------------DTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~------------d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|.++..+|++++|++.|+++++++|+            +++.+...+.++..+|++++|...+.++
T Consensus       246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999999999999999999999999            7888888889999999999999987653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=5.8e-14  Score=131.07  Aligned_cols=117  Identities=13%  Similarity=0.146  Sum_probs=100.6

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +.+.+-..+|...|.+++  +++|+++.+|.++|.++..+|++++|+++|++|++++|+++     ..++         +
T Consensus        16 ~~~~g~~~~A~~~~~~Al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~---------~   79 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAI--ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-----KGYY---------R   79 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH-----HHHH---------H
T ss_pred             HHHhCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHH---------H
Confidence            344455678899999999  89999999999999999999999999999999999999987     3433         5


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFL  230 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~--~a~Lg~~dEA~~~~l  230 (233)
                      +|.++..+|++++|++.|+++++++|++++.+.+.+.+  +.++|++++|...+.
T Consensus        80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999988888888  667899999998876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.47  E-value=7.7e-13  Score=107.36  Aligned_cols=121  Identities=7%  Similarity=0.002  Sum_probs=103.0

Q ss_pred             hHHHhccCcchHHHHHHHHhccc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGN--NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG  173 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~--l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~  173 (233)
                      ..+.+.+-..+|...+..++  +  .+|.++.++..+|.++..+|++++|++.|+++++++|+++     ..++      
T Consensus       113 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~------  179 (252)
T 2ho1_A          113 GFLYEQKRYEEAYQRLLEAS--QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP-----SVAL------  179 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-----HHHH------
T ss_pred             HHHHHHhHHHHHHHHHHHHH--hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH-----HHHH------
Confidence            34445556667777777777  5  7788899999999999999999999999999999999876     3333      


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                         .+|.++...|++++|++.|+++++.+|++++.+...+.+...+|++++|...+.++
T Consensus       180 ---~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          180 ---EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             ---HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence               59999999999999999999999999999998888888899999999999988764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.47  E-value=5.8e-13  Score=111.27  Aligned_cols=121  Identities=13%  Similarity=0.151  Sum_probs=105.9

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+-+.+-..+|...+..++  +.+|+++.++..+|.++...|++++|+..|+++++++|+++     ..+.        
T Consensus        11 ~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~--------   75 (359)
T 3ieg_A           11 KKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT-----AARL--------   75 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHcCCHHHHHHHHHHHH--hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc-----hHHH--------
Confidence            34455566788999999999  89999999999999999999999999999999999999887     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNP---NDTEESIWC------------FLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP---~d~e~~~~~------------~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       .+|.++...|++++|++.|+++++++|   ++++.+...            +.+....|++++|...+.++
T Consensus        76 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  146 (359)
T 3ieg_A           76 -QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI  146 (359)
T ss_dssp             -HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence             599999999999999999999999999   888776655            56778999999999988764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=2.7e-13  Score=108.79  Aligned_cols=130  Identities=9%  Similarity=0.000  Sum_probs=107.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSRE-------AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT  168 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~-------a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~  168 (233)
                      ..+.+.+-...|...+..++  +++|++       +.+|..+|.++..+|++++|++.|+++++++|+..     .+.-.
T Consensus        46 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~  118 (258)
T 3uq3_A           46 AAEYEKGEYETAISTLNDAV--EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-----ILTKL  118 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-----HHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHH--HhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH-----HHHHH
Confidence            34445556678888999888  677766       89999999999999999999999999999877521     00000


Q ss_pred             -----------------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          169 -----------------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       169 -----------------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                                       .....++.++|.++...|++++|++.|+++++++|+++..+..++.++..+|++++|...+.+
T Consensus       119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                             011446678999999999999999999999999999999999999999999999999999876


Q ss_pred             h
Q 026773          232 A  232 (233)
Q Consensus       232 ~  232 (233)
                      +
T Consensus       199 a  199 (258)
T 3uq3_A          199 A  199 (258)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.46  E-value=9.3e-14  Score=110.16  Aligned_cols=129  Identities=9%  Similarity=-0.014  Sum_probs=103.8

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-------
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT-------  168 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~-------  168 (233)
                      ..+.+.+-...|...+..++  +++|+++.+|..+|.++..+|++++|+..|+++++++| ++     .+...       
T Consensus        14 ~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~-----~~~~~~~~~~~~   85 (176)
T 2r5s_A           14 SELLQQGEHAQALNVIQTLS--DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN-----SYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHTSC--HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH-----HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch-----HHHHHHHHHHHH
Confidence            44555666678899999888  89999999999999999999999999999999999999 65     21110       


Q ss_pred             -------------------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 026773          169 -------------------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND--TEESIWCFLCEAQLYGVDEARN  227 (233)
Q Consensus       169 -------------------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d--~e~~~~~~l~~a~Lg~~dEA~~  227 (233)
                                         +.-..+++++|.++...|++++|++.|+++++++|+.  +..+..++.++..+|+.++|..
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence                               0115677788999999999999999999999998875  4466677778888888888888


Q ss_pred             HHHhh
Q 026773          228 RFLEA  232 (233)
Q Consensus       228 ~~l~~  232 (233)
                      .|.++
T Consensus       166 ~y~~a  170 (176)
T 2r5s_A          166 KYRRQ  170 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.46  E-value=8.2e-14  Score=111.90  Aligned_cols=120  Identities=9%  Similarity=0.115  Sum_probs=99.1

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------hhhhhhh
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------SIVGIIL  176 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------~~~~a~~  176 (233)
                      +.+..+|+...  +..+..+..+..+|.+++..|+|++|+..|++|++++|+++.     + ...        -.+.++.
T Consensus        21 ~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~   92 (198)
T 2fbn_A           21 GAKKSIYDYTD--EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-----W-DDQILLDKKKNIEISCNL   92 (198)
T ss_dssp             -CCCSGGGCCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-----C-CCHHHHHHHHHHHHHHHH
T ss_pred             cccCchhhCCH--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-----c-chhhHHHHHHHHHHHHHH
Confidence            44445554433  344667889999999999999999999999999999998771     1 100        0125677


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|.++..+|++++|++.|+++++++|+++..++.++.++..+|++++|...|.++
T Consensus        93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999998764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.46  E-value=4.5e-13  Score=93.00  Aligned_cols=88  Identities=18%  Similarity=0.225  Sum_probs=75.9

Q ss_pred             CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          119 NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       119 l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      ++| +++.++..+|.++...|++++|+..|++|++++|+++     ..++         ++|.++...|++++|++.|++
T Consensus         3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~l~~~~~~~~~~~~A~~~~~~   68 (91)
T 1na3_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAWY---------NLGNAYYKQGDYDEAIEYYQK   68 (91)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-----HHHH---------HHHHHHHHHhhHHHHHHHHHH
Confidence            445 5789999999999999999999999999999999887     3433         599999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcC
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLY  220 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg  220 (233)
                      +++++|++++.+..++.++..+|
T Consensus        69 a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           69 ALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCCCCHHHHHHHHHHHHhcC
Confidence            99999999998877777766543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.45  E-value=1.2e-12  Score=96.43  Aligned_cols=98  Identities=16%  Similarity=0.053  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      +++++.+|.+++..|++++|++.|+++++.+|+++.  ....++.         +|.+++..|++++|++.|+++++.+|
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~---------lg~~~~~~~~~~~A~~~~~~~~~~~p   70 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY--TPNALYW---------LGESYYATRNFQLAEAQFRDLVSRYP   70 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT--HHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc--cHHHHHH---------HHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            456889999999999999999999999999999871  0013333         89999999999999999999999999


Q ss_pred             CC---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 ND---TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++   ++.+.+++.|+..+|++++|...|.++
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99   888899999999999999999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.45  E-value=2.3e-13  Score=117.31  Aligned_cols=129  Identities=8%  Similarity=-0.036  Sum_probs=91.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-------
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT-------  168 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~-------  168 (233)
                      ..+.+.+-...|...+.+++  +++|++++++..+|.++..+|++++|++.++++++++|+..     .....       
T Consensus       125 ~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~-----~~~~~~~~~l~~  197 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXDAW--QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR-----YQGLVAQIELLX  197 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH-----HHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHH--HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH-----HHHHHHHHHHHh
Confidence            34455566778888999988  89999999999999999999999999999888888888433     11111       


Q ss_pred             ------------------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 026773          169 ------------------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND--TEESIWCFLCEAQLYGVDEARNR  228 (233)
Q Consensus       169 ------------------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d--~e~~~~~~l~~a~Lg~~dEA~~~  228 (233)
                                        +.-.++++++|.++...|++++|++.|+++++++|++  ++.+..++.++..+|+.++|...
T Consensus       198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~  277 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX  277 (287)
T ss_dssp             HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence                              0013455566777777777777777777777777666  55555555666666666666666


Q ss_pred             HHh
Q 026773          229 FLE  231 (233)
Q Consensus       229 ~l~  231 (233)
                      +.+
T Consensus       278 ~r~  280 (287)
T 3qou_A          278 YRR  280 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.45  E-value=1.3e-12  Score=116.72  Aligned_cols=117  Identities=15%  Similarity=0.109  Sum_probs=104.0

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      +.+-...|...+..++  +++|+++.+|..+|.++...|++++|++.|+++++++|+++     ..+.         ++|
T Consensus       288 ~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~la  351 (537)
T 3fp2_A          288 DKENSQEFFKFFQKAV--DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-----YPYI---------QLA  351 (537)
T ss_dssp             CSSCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS-----HHHH---------HHH
T ss_pred             HhcCHHHHHHHHHHHh--ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHH
Confidence            3344567778888888  88999999999999999999999999999999999999988     3433         499


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++...|++++|++.|+++++++|++++.+.+++.++..+|++++|...+.++
T Consensus       352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.45  E-value=3e-13  Score=125.08  Aligned_cols=120  Identities=11%  Similarity=0.032  Sum_probs=104.8

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCCCCccchhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQKISGKGAYR  166 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l---------GdyeeAIadfdkAIeLdP~~~~~~~~~y~  166 (233)
                      ..+.+.+-..+|...|.+++  +++|+ +.++.++|.++..+         |++++|++.|++|++++|+++     ..+
T Consensus       145 ~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~  216 (474)
T 4abn_A          145 EVYWKKGDVTSAHTCFSGAL--THCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG-----RSW  216 (474)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH--TTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH--hhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH-----HHH
Confidence            44455556677888888888  89999 89999999999999         999999999999999999988     333


Q ss_pred             hhhhhhhhhhhhHHHHHHc--------CCcHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          167 FTISIVGIILKKLIRVSHF--------NRFEEGAEQFRIDVAQNP---NDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       167 ~~~~~~~a~~~rG~al~~l--------GryeeAi~~f~kAL~lnP---~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .         ++|.++..+        |++++|++.|+++++++|   ++++.+..++.++..+|++++|...|.++
T Consensus       217 ~---------~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  284 (474)
T 4abn_A          217 Y---------ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA  284 (474)
T ss_dssp             H---------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             H---------HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3         589999998        999999999999999999   89998888999999999999999988764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.44  E-value=9.7e-13  Score=108.38  Aligned_cols=124  Identities=13%  Similarity=0.009  Sum_probs=101.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      ..+-+.+-...|...++.++  +..|++   +.+++.+|.+++.+|++++|++.|+++++++|+++     ..      .
T Consensus        12 ~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~-----~~------~   78 (225)
T 2yhc_A           12 QQKLQDGNWRQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-----NI------D   78 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH--HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----TH------H
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----cH------H
Confidence            34555566788999999999  777876   48999999999999999999999999999999987     21      1


Q ss_pred             hhhhhhHHHHHH------------------cCCcHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHH
Q 026773          173 GIILKKLIRVSH------------------FNRFEEGAEQFRIDVAQNPNDTEES-----------------IWCFLCEA  217 (233)
Q Consensus       173 ~a~~~rG~al~~------------------lGryeeAi~~f~kAL~lnP~d~e~~-----------------~~~~l~~a  217 (233)
                      .+++.+|.+++.                  .|++++|++.|+++++.+|+++...                 ...+.++.
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~  158 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT  158 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            133457888876                  6799999999999999999987543                 34556677


Q ss_pred             HcCCHHHHHHHHHhh
Q 026773          218 QLYGVDEARNRFLEA  232 (233)
Q Consensus       218 ~Lg~~dEA~~~~l~~  232 (233)
                      +.|++++|+..|.++
T Consensus       159 ~~~~~~~A~~~~~~~  173 (225)
T 2yhc_A          159 ERGAWVAVVNRVEGM  173 (225)
T ss_dssp             HHTCHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHH
Confidence            899999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.44  E-value=2.8e-13  Score=110.86  Aligned_cols=121  Identities=9%  Similarity=0.054  Sum_probs=99.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-...|...+..++  +++|+++.+|..+|.++..+|++++|++.|+++++++|+++     ..++        
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~--------  146 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAV--DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP-----KVFY--------  146 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH-----HHHH--------
T ss_pred             HHHHHcccHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH-----HHHH--------
Confidence            34445556677888888888  88999999999999999999999999999999999999887     3333        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG---VDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~---~dEA~~~~l~~  232 (233)
                       ++|...+..+++++|++.|+++++++|+++..+.+++.+...+|+   +++|...+.++
T Consensus       147 -~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  205 (272)
T 3u4t_A          147 -ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL  205 (272)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence             488566666799999999999999999999888888888888887   77777776653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.44  E-value=6.8e-13  Score=110.30  Aligned_cols=129  Identities=9%  Similarity=0.087  Sum_probs=104.3

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCC---CCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCCCCccch
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFR--------QGDVVGSVAEFDKAIELDPRQKISGKGA  164 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P---~~a~Ay~~RG~a~~~--------lGdyeeAIadfdkAIeLdP~~~~~~~~~  164 (233)
                      ..+-+.+-...|...+..++  +++|   ..+.+++.+|.+++.        +|++++|+..|+++++++|+++.     
T Consensus        60 ~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----  132 (261)
T 3qky_A           60 RAYYQNKEYLLAASEYERFI--QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-----  132 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-----
T ss_pred             HHHHHhCcHHHHHHHHHHHH--HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-----
Confidence            33444555678888999998  7766   457899999999999        99999999999999999999872     


Q ss_pred             hhhh---------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHc----------CCH
Q 026773          165 YRFT---------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN---DTEESIWCFLCEAQL----------YGV  222 (233)
Q Consensus       165 y~~~---------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~---d~e~~~~~~l~~a~L----------g~~  222 (233)
                      . +.         ..+...++++|.+++..|++++|++.|+++++.+|+   .++.+.+++.|+..+          |++
T Consensus       133 ~-~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~  211 (261)
T 3qky_A          133 V-DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY  211 (261)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence            2 21         011222367999999999999999999999999998   456778888888866          889


Q ss_pred             HHHHHHHHhh
Q 026773          223 DEARNRFLEA  232 (233)
Q Consensus       223 dEA~~~~l~~  232 (233)
                      ++|...+.++
T Consensus       212 ~~A~~~~~~~  221 (261)
T 3qky_A          212 RRAVELYERL  221 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.44  E-value=8.3e-13  Score=97.29  Aligned_cols=85  Identities=7%  Similarity=0.081  Sum_probs=77.0

Q ss_pred             hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF  185 (233)
Q Consensus       106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l  185 (233)
                      ++...+..++  +.+|+++.+|+.+|.++..+|++++|+..|++|++++|+++     ..++         ++|.++..+
T Consensus         3 ~a~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAML--AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS-----VAWK---------WLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHH--TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHH
T ss_pred             HHHHHHHHHH--HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH-----HHHH---------HHHHHHHHc
Confidence            4677888888  89999999999999999999999999999999999999987     3433         599999999


Q ss_pred             CCcHHHHHHHHHHHHcCCCCH
Q 026773          186 NRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       186 GryeeAi~~f~kAL~lnP~d~  206 (233)
                      |++++|++.|+++++++|++.
T Consensus        67 g~~~~A~~~~~~al~~~~~~~   87 (115)
T 2kat_A           67 GDRAGARQAWESGLAAAQSRG   87 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhccccc
Confidence            999999999999999998543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.43  E-value=2.7e-12  Score=107.19  Aligned_cols=121  Identities=8%  Similarity=0.001  Sum_probs=105.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-...|...++.++  +.+|+++.++..+|.++...|++++|++.++++++++|+++     ..+.        
T Consensus       128 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~--------  192 (359)
T 3ieg_A          128 LDAFDGADYTAAITFLDKIL--EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT-----EAFY--------  192 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH-----HHHH--------
T ss_pred             HHHHHccCHHHHHHHHHHHH--HhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH--------
Confidence            34455556678888898888  88999999999999999999999999999999999999988     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC------------FLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~------------~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       .+|.++...|++++|++.|+++++++|+++..+.+.            +.++...|++++|...+.++
T Consensus       193 -~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  260 (359)
T 3ieg_A          193 -KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV  260 (359)
T ss_dssp             -HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             599999999999999999999999999998865443            55677899999999988764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.42  E-value=1.6e-12  Score=107.07  Aligned_cols=129  Identities=9%  Similarity=0.016  Sum_probs=106.2

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhC
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAV---VAIRRGMLLFR------------------QGDVVGSVAEFDKAIELD  154 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~---Ay~~RG~a~~~------------------lGdyeeAIadfdkAIeLd  154 (233)
                      ..+-+.+-...|...++.++  +++|+++.   +++.+|.++..                  +|++++|+..|+++++.+
T Consensus        49 ~~~~~~~~~~~A~~~~~~~l--~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  126 (225)
T 2yhc_A           49 YAYYKNADLPLAQAAIDRFI--RLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY  126 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCHHHHHHHHHHHH--HHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence            34455556678899999999  88998874   89999999987                  689999999999999999


Q ss_pred             CCCCCCccchhhhh---------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCH
Q 026773          155 PRQKISGKGAYRFT---------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT---EESIWCFLCEAQLYGV  222 (233)
Q Consensus       155 P~~~~~~~~~y~~~---------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~---e~~~~~~l~~a~Lg~~  222 (233)
                      |+++.      .+.         ..+....+.+|.+++..|++++|+..|+++++..|+++   +.+..++.|+.++|+.
T Consensus       127 P~~~~------a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          127 PNSQY------TTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             TTCTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             cCChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence            99882      221         01122335689999999999999999999999999986   5678888999999999


Q ss_pred             HHHHHHHHhh
Q 026773          223 DEARNRFLEA  232 (233)
Q Consensus       223 dEA~~~~l~~  232 (233)
                      ++|+..+..+
T Consensus       201 ~~A~~~~~~l  210 (225)
T 2yhc_A          201 AQAEKVAKII  210 (225)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.42  E-value=3.6e-13  Score=98.85  Aligned_cols=75  Identities=8%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      .+|+++.+|+.+|.++..+|++++|++.|++|++++|+++     ..++         ++|.++..+|++++|++.|+++
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~---------~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-----GTYY---------HLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-----HHHH---------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999998     4433         5999999999999999999999


Q ss_pred             HHcCCCCHH
Q 026773          199 VAQNPNDTE  207 (233)
Q Consensus       199 L~lnP~d~e  207 (233)
                      ++++|++.+
T Consensus        68 l~l~~~~~~   76 (100)
T 3ma5_A           68 IEVAREEGT   76 (100)
T ss_dssp             HHHHHHHSC
T ss_pred             HhhhhcCCc
Confidence            999886443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.42  E-value=4e-13  Score=121.79  Aligned_cols=117  Identities=10%  Similarity=0.152  Sum_probs=102.2

Q ss_pred             hHHHhccCcchHHHHHHHHhccc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGN----------------NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~----------------l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~  159 (233)
                      ..+-+.+-...|...|.+++  +                ++|.++.+|.++|.++..+|++++|++++++|++++|+++ 
T Consensus       231 ~~~~~~g~~~~Ai~~y~kAl--~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~-  307 (370)
T 1ihg_A          231 NTFFKSQNWEMAIKKYTKVL--RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT-  307 (370)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH-
T ss_pred             HHHHHhcCHHHHHHHHHHHH--HHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH-
Confidence            34445556677888888888  5                7899999999999999999999999999999999999987 


Q ss_pred             CccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773          160 SGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR  228 (233)
Q Consensus       160 ~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~  228 (233)
                          ..++         ++|.++..+|++++|+++|+++++++|++.+.+..+..+...+++.++|...
T Consensus       308 ----~a~~---------~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          308 ----KALY---------RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             ----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ----HHHH---------HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                4444         4999999999999999999999999999999888888888888888887654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.42  E-value=2.6e-12  Score=115.49  Aligned_cols=147  Identities=5%  Similarity=-0.045  Sum_probs=122.7

Q ss_pred             ccCCcchhhccccccccccccccccchhHH---Hhcc-CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC--CHHH
Q 026773           69 SKAPLSVQTHINSLFSTPRGHYLQNRAPTF---TRRL-FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVG  142 (233)
Q Consensus        69 ~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~---~r~~-~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG--dyee  142 (233)
                      .+.|+-+....+|+........+.+....+   -+.+ +.++|..+++.++  ++||++..+|+.||.++..+|  ++++
T Consensus        10 dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L--~~nP~~~taWn~R~~~L~~l~~~~~~e   87 (306)
T 3dra_A           10 DITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGI--NELASHYTIWIYRFNILKNLPNRNLYD   87 (306)
T ss_dssp             TCCCCCCCCSSCCTTCCCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTCTTSCHHH
T ss_pred             CCeecCCCCCCCCceeeeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHCcHHHHHHHHHHHHHHHcccccHHH
Confidence            567777767777776655544444443333   3344 7889999999999  999999999999999999999  9999


Q ss_pred             HHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH----HHc---CCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773          143 SVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV----SHF---NRFEEGAEQFRIDVAQNPNDTEESIWCFLC  215 (233)
Q Consensus       143 AIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al----~~l---GryeeAi~~f~kAL~lnP~d~e~~~~~~l~  215 (233)
                      +++.++++|+++|++.     .. |+        .||.++    ..+   ++++++++.++++++++|.+..+|.+++.+
T Consensus        88 eL~~~~~~L~~nPk~y-----~a-W~--------~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~v  153 (306)
T 3dra_A           88 ELDWCEEIALDNEKNY-----QI-WN--------YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWL  153 (306)
T ss_dssp             HHHHHHHHHHHCTTCC-----HH-HH--------HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcccH-----HH-HH--------HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999998     44 33        599999    777   899999999999999999999999999999


Q ss_pred             HHHcCCHH--HHHHHHHh
Q 026773          216 EAQLYGVD--EARNRFLE  231 (233)
Q Consensus       216 ~a~Lg~~d--EA~~~~l~  231 (233)
                      ..++|+++  ++.+.+.+
T Consensus       154 l~~l~~~~~~~EL~~~~~  171 (306)
T 3dra_A          154 VDTFDLHNDAKELSFVDK  171 (306)
T ss_dssp             HHHTTCTTCHHHHHHHHH
T ss_pred             HHHhcccChHHHHHHHHH
Confidence            99999888  88876654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.42  E-value=2.3e-12  Score=112.89  Aligned_cols=121  Identities=13%  Similarity=0.154  Sum_probs=104.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+-+.+-...|..+++.++  +.+|+++.+|..+|.++..+|++++|+..|+++++++|+++     ..+.        
T Consensus        34 ~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~--------   98 (450)
T 2y4t_A           34 KKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT-----AARL--------   98 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHCCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH-----HHHH--------
Confidence            44555666788999999998  88999999999999999999999999999999999999987     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT---EESIWC------------FLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~---e~~~~~------------~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       .+|.++..+|++++|++.|+++++++|+++   +.+...            +.+....|++++|...+.++
T Consensus        99 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  169 (450)
T 2y4t_A           99 -QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI  169 (450)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             599999999999999999999999999987   654333            55677899999999988764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.42  E-value=1.1e-12  Score=114.79  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=91.9

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      +.+...|..++  ..+|+++.+|..+|..++..|++++|+..|+++++++|+++     ..+.         .+|.++..
T Consensus         9 ~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~---------~l~~~~~~   72 (450)
T 2y4t_A            9 SGVDLGTENLY--FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY-----IAYY---------RRATVFLA   72 (450)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHH
T ss_pred             ccccccccccc--cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH-----HHHH---------HHHHHHHH
Confidence            34555666666  78999999999999999999999999999999999999887     3433         59999999


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++++|++.|+++++++|+++..+..++.++..+|++++|...|.++
T Consensus        73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  120 (450)
T 2y4t_A           73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV  120 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999889999999999999999998764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.42  E-value=3.1e-13  Score=130.91  Aligned_cols=114  Identities=11%  Similarity=0.073  Sum_probs=99.8

Q ss_pred             cchHHHHHHHHh------cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773          104 IPSVSGIWDALT------GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus       104 ~~~a~~i~~~~i------~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      ..+|...+++++      ..+++|+++++|..+|.++..+|++++|++.|++|++++|+++     ..++         +
T Consensus       407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~---------~  472 (681)
T 2pzi_A          407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW-----RLVW---------Y  472 (681)
T ss_dssp             HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH-----HHHH---------H
T ss_pred             HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH-----HHHH---------H
Confidence            345667777765      2267899999999999999999999999999999999999988     4444         4


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|.++..+|++++|++.|+++++++|++++.+.+++.++.++|++++ ...|.++
T Consensus       473 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a  526 (681)
T 2pzi_A          473 RAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTV  526 (681)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence            99999999999999999999999999999999999999999999998 8777653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.40  E-value=4.8e-12  Score=115.11  Aligned_cols=121  Identities=11%  Similarity=-0.048  Sum_probs=99.3

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-..+|...+++++  +++|+++.+|..+|.++...|++++|++.|+++++++|++.     ..+         
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~---------  444 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSS--TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-----LPY---------  444 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS-----HHH---------
T ss_pred             HHHHHhccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-----HHH---------
Confidence            34455556677777888777  77888888888888888888888888888888888888776     332         


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +.+|.++...|++++|++.|+++++++|+++..+..++.++.+.|++++|...|.++
T Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  501 (597)
T 2xpi_A          445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA  501 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            258999999999999999999999999999988888888888999999999888764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.39  E-value=1.7e-12  Score=111.66  Aligned_cols=112  Identities=13%  Similarity=0.071  Sum_probs=94.9

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-hCCCCCCCccchhhhhh
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-------QGDV-------VGSVAEFDKAIE-LDPRQKISGKGAYRFTI  169 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~-------lGdy-------eeAIadfdkAIe-LdP~~~~~~~~~y~~~~  169 (233)
                      ..|..+|.+++  +.+|+++++|+.+|..+..       .|++       ++|++.|++|++ ++|++.      ..|. 
T Consensus        33 ~~a~~~~~~al--~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~------~~~~-  103 (308)
T 2ond_A           33 KRVMFAYEQCL--LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------LLYF-  103 (308)
T ss_dssp             HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH------HHHH-
T ss_pred             HHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH------HHHH-
Confidence            45778999999  8899999999999999874       6986       999999999999 799887      3333 


Q ss_pred             hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          170 SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE-ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       170 ~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e-~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                             ++|.++...|++++|.+.|+++++++|++++ .+...+.++..+|++++|+..|.++
T Consensus       104 -------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A          104 -------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             -------HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             -------HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                   5888999999999999999999999998886 6666667777888899998888764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.39  E-value=3e-13  Score=116.55  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=84.6

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-..+|...|..++  +++|+++.+|.++|.++..+|++++|+++|++|++++|+++     ..++        
T Consensus        12 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~--------   76 (281)
T 2c2l_A           12 NRLFVGRKYPEAAACYGRAI--TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-----KAHF--------   76 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH-----HHHH--------
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHH--------
Confidence            44555566778999999999  89999999999999999999999999999999999999987     4433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                       ++|.++..+|++++|++.|+++++++|++
T Consensus        77 -~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           77 -FLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence             59999999999999999999999999976

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.39  E-value=1.7e-12  Score=116.02  Aligned_cols=130  Identities=15%  Similarity=0.139  Sum_probs=95.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------  169 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------  169 (233)
                      ..+.+.+-...|...+..++  +++|+++.+|..+|.++..+|++++|++.|+++++++|+++     ..+...      
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~  390 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQ--SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP-----EVPTFFAEILTD  390 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----HHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHH
Confidence            33444445556666666666  56666666666666666666666666666666666666665     111110      


Q ss_pred             -------------------------hhhhhhhhhHHHHHHc----------CCcHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 026773          170 -------------------------SIVGIILKKLIRVSHF----------NRFEEGAEQFRIDVAQNPNDTEESIWCFL  214 (233)
Q Consensus       170 -------------------------~~~~a~~~rG~al~~l----------GryeeAi~~f~kAL~lnP~d~e~~~~~~l  214 (233)
                                               ..++.+..+|.++...          |++++|++.|+++++++|++++.+..++.
T Consensus       391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  470 (537)
T 3fp2_A          391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ  470 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                                     0134466778999999          99999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhh
Q 026773          215 CEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       215 ~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++..+|++++|...|.++
T Consensus       471 ~~~~~g~~~~A~~~~~~a  488 (537)
T 3fp2_A          471 LKLQMEKIDEAIELFEDS  488 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHH
Confidence            999999999999998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.38  E-value=5.5e-12  Score=114.76  Aligned_cols=125  Identities=10%  Similarity=0.032  Sum_probs=91.7

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      .+.+-..+|...++.++  +++|+++.+|..+|.++...|++++|++.|++++++.|+.+.   ++.    ..+.++..+
T Consensus       452 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~p~----~~~~~~~~l  522 (597)
T 2xpi_A          452 MQLGNILLANEYLQSSY--ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS---NEK----PWAATWANL  522 (597)
T ss_dssp             HHHTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC---CSG----GGHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc---chh----hHHHHHHHH
Confidence            33344455555666655  566667777777777777777777777777777766332110   000    012355679


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |.++...|++++|++.|+++++++|+++..+..++.++...|++++|...+.++
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.38  E-value=2.8e-12  Score=90.46  Aligned_cols=95  Identities=8%  Similarity=-0.015  Sum_probs=83.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCCCccchhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--QKISGKGAYRFTISIVG  173 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~--~~~~~~~~y~~~~~~~~  173 (233)
                      ..+.+.+-...|...+..++  +++|+++.+|..+|.++..+|++++|++.|+++++++|+  +.     ..+       
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~-------   79 (112)
T 2kck_A           14 VLQYDAGNYTESIDLFEKAI--QLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK-----DVW-------   79 (112)
T ss_dssp             HHHHSSCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH-----HHH-------
T ss_pred             HHHHHhhhHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH-----HHH-------
Confidence            33444555678889999998  889999999999999999999999999999999999998  66     333       


Q ss_pred             hhhhhHHHHHHc-CCcHHHHHHHHHHHHcCCCCH
Q 026773          174 IILKKLIRVSHF-NRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       174 a~~~rG~al~~l-GryeeAi~~f~kAL~lnP~d~  206 (233)
                        .++|.++..+ |++++|++.++++++.+|+++
T Consensus        80 --~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           80 --AAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             --HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             --HHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence              3599999999 999999999999999999864

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.38  E-value=2e-12  Score=110.99  Aligned_cols=129  Identities=10%  Similarity=-0.011  Sum_probs=102.9

Q ss_pred             chhHHHhccCcchHHHHHHHHhcccCCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCCCccchhh
Q 026773           94 RAPTFTRRLFIPSVSGIWDALTGGNNNSRE------AVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPRQKISGKGAYR  166 (233)
Q Consensus        94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~------a~Ay~~RG~a~~~l-GdyeeAIadfdkAIeLdP~~~~~~~~~y~  166 (233)
                      ....+.+.+-..+|...+++++  ++.|..      +.++.++|.++..+ |++++|++.|++|+++.|+...     ..
T Consensus        83 lg~~~~~~g~~~~A~~~~~~Al--~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-----~~  155 (292)
T 1qqe_A           83 AYKCFKSGGNSVNAVDSLENAI--QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-----VA  155 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-----hH
Confidence            3344555556677888888887  444432      67999999999996 9999999999999999997641     11


Q ss_pred             hhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          167 FTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE-------ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       167 ~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e-------~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                         ....+++++|.++..+|+|++|++.|+++++++|++..       .+...+.|+..+|++++|+..+.++
T Consensus       156 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          156 ---LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             ---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               11345678999999999999999999999999998754       3456778899999999999998765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.38  E-value=1.7e-12  Score=93.71  Aligned_cols=113  Identities=12%  Similarity=0.100  Sum_probs=90.9

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-...|...+..++  +.+|+++.++..+|.++..+|++++|+..|+++++++|++..     ...  ....++.
T Consensus        13 ~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~--~~~~~~~   83 (131)
T 1elr_A           13 DAYKKKDFDTALKHYDKAK--ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-----DYR--QIAKAYA   83 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-----CHH--HHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-----hHH--HHHHHHH
Confidence            3444556678889999998  889999999999999999999999999999999999997631     100  1133566


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL  219 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L  219 (233)
                      ++|.++..+|++++|++.|+++++++| +++.......+...+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            799999999999999999999999999 566555555554443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.36  E-value=5.9e-12  Score=111.23  Aligned_cols=120  Identities=19%  Similarity=0.154  Sum_probs=102.3

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-...|...+..++  +++|+++.+|..+|.++...|++++|+..|+++++++|+++     ..+.         
T Consensus       279 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------  342 (514)
T 2gw1_A          279 IMADRNDSTEYYNYFDKAL--KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI-----FPYI---------  342 (514)
T ss_dssp             HHHTSSCCTTGGGHHHHHH--TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS-----HHHH---------
T ss_pred             HHHHCCCHHHHHHHHHHHh--hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH-----HHHH---------
Confidence            3444455667777888887  88899999999999999999999999999999999999887     3333         


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+|.++...|++++|++.|+++++.+|++++.+...+.++..+|++++|...+.++
T Consensus       343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            58999999999999999999999999999998888888999999999999988754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=4.9e-12  Score=121.57  Aligned_cols=114  Identities=11%  Similarity=0.014  Sum_probs=104.7

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd----------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      +.++|...+++++  +++|++..+|+.||.++..+|+          +++|++.++++|+++|+++     ..+.     
T Consensus        44 ~~eeal~~~~~~l--~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y-----~aW~-----  111 (567)
T 1dce_A           44 LDESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-----GTWH-----  111 (567)
T ss_dssp             CSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHH-----
T ss_pred             CCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH-----HHHH-----
Confidence            7788899999999  9999999999999999999998          9999999999999999998     3433     


Q ss_pred             hhhhhhHHHHHHcC--CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhh
Q 026773          173 GIILKKLIRVSHFN--RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-GVDEARNRFLEA  232 (233)
Q Consensus       173 ~a~~~rG~al~~lG--ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg-~~dEA~~~~l~~  232 (233)
                          .||.++..+|  ++++|++.+++++++||++..+|.+++.+...+| .+++|.+.+.++
T Consensus       112 ----hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~  170 (567)
T 1dce_A          112 ----HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (567)
T ss_dssp             ----HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             ----HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                5999999999  6699999999999999999999999999999999 899999887653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.36  E-value=8.1e-12  Score=107.47  Aligned_cols=118  Identities=14%  Similarity=0.077  Sum_probs=87.7

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~-Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      .+.+-...|..+|+.++  +++|+++. +|..+|.++.++|++++|++.|++|++++|...     .. |        +.
T Consensus       110 ~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~-~--------~~  173 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLL--AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH-----HV-Y--------VT  173 (308)
T ss_dssp             HHTTCHHHHHHHHHHHH--TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT-----HH-H--------HH
T ss_pred             HhcCCHHHHHHHHHHHH--hccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-----HH-H--------HH
Confidence            33445567778888887  77888876 888888888888888888888888888888665     22 2        12


Q ss_pred             hHHHHHH-cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          178 KLIRVSH-FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       178 rG~al~~-lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+...+. .|++++|++.|+++++++|++++.+...+..+..+|++++|+..|.++
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  229 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444332 688888888888888888888877666666677888888888888764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.36  E-value=3.7e-13  Score=100.20  Aligned_cols=83  Identities=14%  Similarity=0.122  Sum_probs=70.7

Q ss_pred             HcCCHHHHHHHHHHHHhhC---CCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773          136 RQGDVVGSVAEFDKAIELD---PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC  212 (233)
Q Consensus       136 ~lGdyeeAIadfdkAIeLd---P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~  212 (233)
                      .+|++++|+..|++|++++   |+++     .         ++.++|.++..+|++++|++.|+++++++|++++.+.++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~-----~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   67 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLA-----E---------CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY   67 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHH-----H---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHH-----H---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            4799999999999999994   6554     2         344699999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhh
Q 026773          213 FLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       213 ~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +.|+..+|++++|...+.++
T Consensus        68 ~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           68 AMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999988764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.35  E-value=5.1e-12  Score=111.61  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=80.8

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH--
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH--  184 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~--  184 (233)
                      |...+..++  +.+|+++.+|..+|.++...|++++|+..|+++++++|+++     ....   .+.++.++|.++..  
T Consensus       357 A~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---~~~~~~~l~~~~~~~~  426 (514)
T 2gw1_A          357 CETLFSEAK--RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD-----GIYV---GIAPLVGKATLLTRNP  426 (514)
T ss_dssp             HHHHHHHHH--HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS-----SCSS---CSHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHH--HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-----hHHH---HHHHHHHHHHHHhhhh
Confidence            333444443  44455555555555555555555555555555555555443     1000   02266789999999  


Q ss_pred             -cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 -FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 -lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       .|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus       427 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          427 TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             CTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence             999999999999999999999999899999999999999999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.35  E-value=2.2e-12  Score=110.71  Aligned_cols=129  Identities=10%  Similarity=0.042  Sum_probs=101.5

Q ss_pred             hHHHhccCcchHHHHHHHHhccc--C-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGN--N-NS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISI  171 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~--l-~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~  171 (233)
                      ..+...+-.+.|...|.+++...  . +| ..+.+|.++|.++..+|++++|+..|++|+++.|+..     ..   ...
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-----~~---~~~  116 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-----QF---RRG  116 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CH---HHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-----CH---HHH
Confidence            34445556677888888887221  1 22 2378999999999999999999999999999998765     11   122


Q ss_pred             hhhhhhhHHHHHHc-CCcHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          172 VGIILKKLIRVSHF-NRFEEGAEQFRIDVAQNPND------TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       172 ~~a~~~rG~al~~l-GryeeAi~~f~kAL~lnP~d------~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +.++.++|.++... |++++|++.|++|+++.|++      .+.+...+.++..+|++++|+..|.++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  184 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL  184 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45677899999995 99999999999999998865      344566788889999999999998764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.34  E-value=5.2e-13  Score=118.57  Aligned_cols=119  Identities=5%  Similarity=0.048  Sum_probs=77.2

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREA-----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a-----------------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~  159 (233)
                      .+-+.+-...|...|..++  +++|+++                 .+|.++|.++..+|+|++|+.+|++||+++|+++ 
T Consensus       188 ~~~~~g~~~~A~~~y~~Al--~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~-  264 (338)
T 2if4_A          188 SLFKEEKLEEAMQQYEMAI--AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP-  264 (338)
T ss_dssp             HTCSSSCCHHHHHHHHHHH--HHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH-
T ss_pred             HHHhcCCHHHHHHHHHHHH--HHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Confidence            3344455677888999988  8889887                 4999999999999999999999999999999987 


Q ss_pred             CccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHh
Q 026773          160 SGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-QLYGVDEARNRFLE  231 (233)
Q Consensus       160 ~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a-~Lg~~dEA~~~~l~  231 (233)
                          ..++         ++|.++..+|++++|+++|+++++++|++++.+..+..+.. ..+..++|+..|.+
T Consensus       265 ----~a~~---------~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~  324 (338)
T 2if4_A          265 ----KALF---------RRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG  324 (338)
T ss_dssp             ----HHHH---------HHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred             ----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                4444         49999999999999999999999999999987777665633 45566777666543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.34  E-value=1.2e-11  Score=88.65  Aligned_cols=94  Identities=20%  Similarity=0.214  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      ++|+.+|.++...|++++|+..|+++++++|++.     ..+.         .+|.++...|++++|++.|+++++.+|+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWY---------NLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch-----hHHH---------HHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            6789999999999999999999999999999877     3333         4899999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          205 DTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       205 d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++..+...+.+....|++++|...+.++
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~   95 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKA   95 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9988888888899999999999988764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.32  E-value=2e-11  Score=106.03  Aligned_cols=109  Identities=10%  Similarity=0.036  Sum_probs=84.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh------h-----------------hhhhhhhh
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------I-----------------SIVGIILK  177 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------~-----------------~~~~a~~~  177 (233)
                      |++++++..+|.++..+|++++|++.|+++++++|++.. ..-...|.      .                 .-..++++
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~  205 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG  205 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            788888888888888888888888888888888887641 00000010      0                 11456788


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEA-RNRFL  230 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA-~~~~l  230 (233)
                      +|.++..+|++++|++.|+++++++|++++.+.+++.+...+|+.+++ ...+.
T Consensus       206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~  259 (291)
T 3mkr_A          206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLS  259 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999775 44444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.32  E-value=5.4e-12  Score=90.04  Aligned_cols=71  Identities=11%  Similarity=0.240  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccch-hhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGA-YRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~-y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      .+.+|.+++..|++++|++.|+++++++|+++     . .++         ++|.++..+|++++|++.|+++++++|++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~---------~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGK-----DEAYY---------LMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH-----HHHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHH---------HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            36789999999999999999999999999987     4 433         59999999999999999999999999999


Q ss_pred             HHHHHH
Q 026773          206 TEESIW  211 (233)
Q Consensus       206 ~e~~~~  211 (233)
                      ++.+.+
T Consensus        69 ~~~~~~   74 (99)
T 2kc7_A           69 PALQAR   74 (99)
T ss_dssp             THHHHH
T ss_pred             HHHHHH
Confidence            987644

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.29  E-value=1.9e-11  Score=112.56  Aligned_cols=153  Identities=8%  Similarity=0.041  Sum_probs=129.3

Q ss_pred             HHhhhhccCCcchhhccccccccccccccccchhHH----HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC
Q 026773           63 HRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTF----TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG  138 (233)
Q Consensus        63 ~~~~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~----~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG  138 (233)
                      -|--...+.|+.+....||+........+.++...+    .+..+.++|..++++++  ++||++..+|+.||.++..+|
T Consensus        25 ~~~~w~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L--~~nP~~ytaWn~R~~iL~~l~  102 (349)
T 3q7a_A           25 QRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIV--RMNPAHYTVWQYRFSLLTSLN  102 (349)
T ss_dssp             SCGGGTTCCCCCCCCCSSCSSCBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTT
T ss_pred             cCcccCCCcccCCCCCCCCeeeeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HhCchhHHHHHHHHHHHHHhh
Confidence            355677899999988889888777666665554443    23337788999999999  999999999999999999999


Q ss_pred             -CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc-C-CcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773          139 -DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF-N-RFEEGAEQFRIDVAQNPNDTEESIWCFLC  215 (233)
Q Consensus       139 -dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l-G-ryeeAi~~f~kAL~lnP~d~e~~~~~~l~  215 (233)
                       +++++++.++++|+++|++.     .. |+        .||.++..+ + +++++++.++++++++|.|..+|.+++.+
T Consensus       103 ~~l~eEL~~~~~~L~~nPKny-----~a-W~--------hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wv  168 (349)
T 3q7a_A          103 KSLEDELRLMNEFAVQNLKSY-----QV-WH--------HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWL  168 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCH-----HH-HH--------HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCcH-----HH-HH--------HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence             59999999999999999998     33 33        599999998 8 99999999999999999999999999988


Q ss_pred             HHHcCCHH--------HHHHHHHh
Q 026773          216 EAQLYGVD--------EARNRFLE  231 (233)
Q Consensus       216 ~a~Lg~~d--------EA~~~~l~  231 (233)
                      ..++|+++        ++.+...+
T Consensus       169 l~~l~~~~~~~~~~~~eELe~~~k  192 (349)
T 3q7a_A          169 YSHFSTLGRISEAQWGSELDWCNE  192 (349)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHhccccccchhhHHHHHHHHHH
Confidence            88888777        77776553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.28  E-value=9.1e-12  Score=119.69  Aligned_cols=113  Identities=12%  Similarity=-0.009  Sum_probs=100.3

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR  181 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG--dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a  181 (233)
                      ..++...++.++  +.+|++..+|++||.++..+|  ++++|++.++++|++||++.      ..|.        .||.+
T Consensus        89 ~~~eL~~~~~~l--~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~------~aW~--------~R~~~  152 (567)
T 1dce_A           89 VKAELGFLESCL--RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWD--------YRRFV  152 (567)
T ss_dssp             HHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH------HHHH--------HHHHH
T ss_pred             HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc------cHHH--------HHHHH
Confidence            467888999999  999999999999999999999  77999999999999999998      3343        69999


Q ss_pred             HHHcC-CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhh
Q 026773          182 VSHFN-RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL--------------YGVDEARNRFLEA  232 (233)
Q Consensus       182 l~~lG-ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L--------------g~~dEA~~~~l~~  232 (233)
                      +..+| +++++++.++++|+++|+|..+|.+++.++..+              +.+++|.+.+.++
T Consensus       153 l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a  218 (567)
T 1dce_A          153 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA  218 (567)
T ss_dssp             HHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred             HHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence            99999 999999999999999999999999999888775              4568888776553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.28  E-value=3.3e-11  Score=95.81  Aligned_cols=110  Identities=11%  Similarity=0.160  Sum_probs=90.2

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-------
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT-------  168 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~-------  168 (233)
                      ..+.+.+-..+|...+..++  +++|+++.+|.++|.++..+|++++|++.|+++++++|++..     ..+.       
T Consensus        45 ~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~~  117 (213)
T 1hh8_A           45 CMYTILKNMTEAEKAFTRSI--NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL-----IDYKILGLQFK  117 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE-----EECGGGTBCCE
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccH-----HHHHHhccccC
Confidence            44555556678999999999  889999999999999999999999999999999999998761     1110       


Q ss_pred             hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773          169 ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC  212 (233)
Q Consensus       169 ~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~  212 (233)
                      .....++.++|.++..+|++++|++.|+++++++|++....+..
T Consensus       118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  161 (213)
T 1hh8_A          118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK  161 (213)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred             ccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence            01235677899999999999999999999999999875443333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.28  E-value=6.1e-12  Score=101.57  Aligned_cols=124  Identities=10%  Similarity=0.073  Sum_probs=99.5

Q ss_pred             HHhccCcchHHHHHHHHhcc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccchhh
Q 026773           98 FTRRLFIPSVSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKGAYR  166 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~------~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~~y~  166 (233)
                      +...+-...|...+..++..      ..+|..+.++..+|.++..+|++++|++.|++|+++-     |+++     .  
T Consensus        53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~--  125 (283)
T 3edt_B           53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP-----D--  125 (283)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-----H--
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh-----H--
Confidence            34444556677777777622      2357788999999999999999999999999999993     3332     1  


Q ss_pred             hhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          167 FTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ--------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       167 ~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l--------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                          ...++.++|.++..+|++++|++.|++++++        +|.....+..++.++..+|++++|...+.++
T Consensus       126 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          126 ----VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             ----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                1234567999999999999999999999999        6766777777888899999999999998765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.27  E-value=1.4e-11  Score=97.47  Aligned_cols=81  Identities=7%  Similarity=-0.066  Sum_probs=70.6

Q ss_pred             hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF  185 (233)
Q Consensus       106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l  185 (233)
                      .+...+.+++  +++|+++.+++.+|.++...|++++|++.|+++++++|+...    ...+        .++|.++..+
T Consensus        92 ~a~~~~~~al--~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~a~--------~~l~~~~~~~  157 (176)
T 2r5s_A           92 PELKRLEQEL--AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----GEVK--------KTFMDILSAL  157 (176)
T ss_dssp             HHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT----THHH--------HHHHHHHHHH
T ss_pred             hHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh----HHHH--------HHHHHHHHHh
Confidence            3577788888  899999999999999999999999999999999999998641    1222        3599999999


Q ss_pred             CCcHHHHHHHHHHHH
Q 026773          186 NRFEEGAEQFRIDVA  200 (233)
Q Consensus       186 GryeeAi~~f~kAL~  200 (233)
                      |+.++|+..|++++.
T Consensus       158 g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          158 GQGNAIASKYRRQLY  172 (176)
T ss_dssp             CSSCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            999999999999875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.27  E-value=4.2e-12  Score=112.74  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=93.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------hhhhhhhhhHHHHHHcCCcHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------SIVGIILKKLIRVSHFNRFEE  190 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------~~~~a~~~rG~al~~lGryee  190 (233)
                      ..|+.+.++..+|.+++..|+|++|+..|++|++++|++.     .+....        -...+++++|.++..+|+|++
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~  248 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE  248 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            3466789999999999999999999999999999999765     111100        002367789999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          191 GAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       191 Ai~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |++.|+++++++|+++..++.++.++..+|++++|+..|.++
T Consensus       249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a  290 (338)
T 2if4_A          249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA  290 (338)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=1e-11  Score=109.98  Aligned_cols=126  Identities=10%  Similarity=0.006  Sum_probs=95.2

Q ss_pred             hccCcchHHHHHHHHh-------cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773          100 RRLFIPSVSGIWDALT-------GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i-------~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      +.+-..+|...+.+++       +...+|+.+.+|.++|.++..+|++++|+..|++|+++.|....    .+  .+...
T Consensus        63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~----~~--~~~~~  136 (472)
T 4g1t_A           63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS----PY--RIESP  136 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----SS--CCCCH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc----cc--chhhH
Confidence            3344456666666654       22458999999999999999999999999999999999876541    11  11223


Q ss_pred             hhhhhhHHHHHHcC--CcHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHh
Q 026773          173 GIILKKLIRVSHFN--RFEEGAEQFRIDVAQNPNDTEESIWCFLCE---AQLYGVDEARNRFLE  231 (233)
Q Consensus       173 ~a~~~rG~al~~lG--ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~---a~Lg~~dEA~~~~l~  231 (233)
                      .++.++|.++..+|  +|++|+++|+++++++|++++.+...+.+.   ...++.++|...+.+
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~  200 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ  200 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            45667898887765  699999999999999999999877776553   355777777776654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.26  E-value=1.7e-11  Score=111.10  Aligned_cols=110  Identities=9%  Similarity=0.059  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCC--ccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKIS--GKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~--~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      .+.+|..+|.+++..|+|++|++.|++|+++.|+.+..  .+...-.......+++++|.+++.+|+|++|+++++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            36779999999999999999999999999943321000  0000000001123556799999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|+++..++.++.++..+|++++|+..+.++
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A  333 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKA  333 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999999999998764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.25  E-value=4.2e-11  Score=93.60  Aligned_cols=96  Identities=9%  Similarity=0.034  Sum_probs=84.3

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGML-LFRQGDV--VGSVAEFDKAIELDPRQKISGKGAYRFTISIVG  173 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a-~~~lGdy--eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~  173 (233)
                      .+.+.+-...|...+..++  +++|+++.++..+|.+ +...|++  ++|+..|+++++++|+++     ..++      
T Consensus        53 ~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~------  119 (177)
T 2e2e_A           53 YYLWQNDYSNSLLAYRQAL--QLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI-----TALM------  119 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH-----HHHH------
T ss_pred             HHHHcCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH-----HHHH------
Confidence            3444455677888999888  8999999999999999 7899999  999999999999999987     3433      


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                         ++|.++...|++++|++.|+++++++|++++.
T Consensus       120 ---~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A          120 ---LLASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             ---HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             ---HHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence               49999999999999999999999999998754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.24  E-value=2.6e-12  Score=119.92  Aligned_cols=98  Identities=11%  Similarity=0.067  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      ++.+.++..+|.+++.+|++++|++.|++|++++|+++     ..+.         ++|.++..+|++++|++.|+++++
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~-----~~~~---------~lg~~~~~~g~~~~A~~~~~~al~   68 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYG---------NRSLAYLRTECYGYALGDATRAIE   68 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH-----HHHH---------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34567788999999999999999999999999999987     3433         599999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|++++.+..++.++..+|++++|...+.++
T Consensus        69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a  100 (477)
T 1wao_1           69 LDKKYIKGYYRRAASNMALGKFRAALRDYETV  100 (477)
T ss_dssp             SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999999998864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=1.6e-11  Score=99.03  Aligned_cols=118  Identities=8%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             cchHHHHHHHHhcc-----c-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccchhhhhhhhh
Q 026773          104 IPSVSGIWDALTGG-----N-NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKGAYRFTISIV  172 (233)
Q Consensus       104 ~~~a~~i~~~~i~~-----~-l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~~y~~~~~~~  172 (233)
                      .+.|...+.+++..     . .+|..+.++..+|.++..+|++++|+..|++|+++.     ++.+      .     ..
T Consensus        17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~-----~~   85 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP------A-----VA   85 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH------H-----HH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch------H-----HH
Confidence            34555666655421     1 347889999999999999999999999999999995     3333      1     12


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQ--------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~l--------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++.++|.++...|++++|++.|++++++        +|.....+..++.++..+|++++|...+.++
T Consensus        86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35667999999999999999999999998        4666666777888889999999999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.24  E-value=1.9e-11  Score=105.26  Aligned_cols=81  Identities=10%  Similarity=0.012  Sum_probs=69.9

Q ss_pred             hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF  185 (233)
Q Consensus       106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l  185 (233)
                      .+...+.+++  +++|+++++++++|.++...|++++|++.|+++++++|++..    ..        ++.++|.++..+
T Consensus       203 ~a~~~l~~al--~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~----~~--------a~~~l~~~~~~~  268 (287)
T 3qou_A          203 PEIQQLQQQV--AENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD----GQ--------TRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG----GH--------HHHHHHHHHHHH
T ss_pred             ccHHHHHHHH--hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc----ch--------HHHHHHHHHHHc
Confidence            3555666667  889999999999999999999999999999999999998831    12        223699999999


Q ss_pred             CCcHHHHHHHHHHHH
Q 026773          186 NRFEEGAEQFRIDVA  200 (233)
Q Consensus       186 GryeeAi~~f~kAL~  200 (233)
                      |+.++|+..|++++.
T Consensus       269 g~~~~a~~~~r~al~  283 (287)
T 3qou_A          269 GTGDALASXYRRQLY  283 (287)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            999999999999986

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.22  E-value=1.1e-10  Score=101.25  Aligned_cols=110  Identities=5%  Similarity=-0.029  Sum_probs=75.4

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      -..++...++.++....+|+++.+++.+|.++...|++++|++.+++     |++.     ..+.         .+|.++
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~-----~~~~---------~l~~~~  140 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL-----ECMA---------MTVQIL  140 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH-----HHHH---------HHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH-----HHHH---------HHHHHH
Confidence            34677888888773335799999999999999999999999999998     7666     2322         244444


Q ss_pred             HHc------------------------------------CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773          183 SHF------------------------------------NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  226 (233)
Q Consensus       183 ~~l------------------------------------GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~  226 (233)
                      ..+                                    |++++|++.|+++++.+|+++..+..++.|+.++|++++|.
T Consensus       141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~  220 (291)
T 3mkr_A          141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE  220 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            444                                    45555555555555555555555555556666666777666


Q ss_pred             HHHHh
Q 026773          227 NRFLE  231 (233)
Q Consensus       227 ~~~l~  231 (233)
                      ..+.+
T Consensus       221 ~~l~~  225 (291)
T 3mkr_A          221 GVLQE  225 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.18  E-value=2e-10  Score=97.84  Aligned_cols=120  Identities=10%  Similarity=0.015  Sum_probs=93.9

Q ss_pred             ccCcchHHHHHHHHhcccCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCCccchhhhhhhh
Q 026773          101 RLFIPSVSGIWDALTGGNNNSRE------AVVAIRRGMLLFRQGDVVGSVAEFDKAIE---LDPRQKISGKGAYRFTISI  171 (233)
Q Consensus       101 ~~~~~~a~~i~~~~i~~~l~P~~------a~Ay~~RG~a~~~lGdyeeAIadfdkAIe---LdP~~~~~~~~~y~~~~~~  171 (233)
                      .+-.+.|...+.+++  ++.+..      +.+|.++|.++..+|++++|+..|++|++   ..|++.     ..     .
T Consensus       128 ~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~-----~~-----~  195 (293)
T 2qfc_A          128 KVDYEYCILELKKLL--NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-----EF-----D  195 (293)
T ss_dssp             SSCHHHHHHHHHHHH--TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-----HH-----H
T ss_pred             CCCHHHHHHHHHHHH--HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-----cc-----h
Confidence            335567888888877  333322      67999999999999999999999999994   455433     11     1


Q ss_pred             hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHhh
Q 026773          172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN------DTEESIWCFLCEAQLYGVDEA-RNRFLEA  232 (233)
Q Consensus       172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~------d~e~~~~~~l~~a~Lg~~dEA-~~~~l~~  232 (233)
                      +.+++++|.++..+|+|++|++.|++++++.++      -+..+...+.++..+|++++| ...+.++
T Consensus       196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            246778999999999999999999999998653      156677788999999999999 6666653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.18  E-value=9.6e-11  Score=103.71  Aligned_cols=122  Identities=12%  Similarity=0.095  Sum_probs=98.8

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------------
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------------  169 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------------  169 (233)
                      ...+...+.+++  +++|+++.++.++|.++...|++++|++.|++|++++|+++     ..+...              
T Consensus       229 ~~~a~~~~~~al--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~y~~~~~~~~~~  301 (472)
T 4g1t_A          229 EGEGEKLVEEAL--EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA-----YLHCQIGCCYRAKVFQVMNL  301 (472)
T ss_dssp             -CHHHHHHHHHH--HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH--HhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH-----HHHHHHHHHHHHHHHHhhhH
Confidence            356777888887  89999999999999999999999999999999999999987     222110              


Q ss_pred             ------------------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHH---HHHH-HH
Q 026773          170 ------------------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEES---IWCF-LC  215 (233)
Q Consensus       170 ------------------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~---~~~~-l~  215 (233)
                                                    ....++.++|.++..+|++++|++.|+++++++|++.+..   ...+ ++
T Consensus       302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~  381 (472)
T 4g1t_A          302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ  381 (472)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence                                          1155678899999999999999999999999999876542   2222 34


Q ss_pred             HHHcCCHHHHHHHHHhh
Q 026773          216 EAQLYGVDEARNRFLEA  232 (233)
Q Consensus       216 ~a~Lg~~dEA~~~~l~~  232 (233)
                      ..++|++++|+..+.++
T Consensus       382 ~~~~~~~~~Ai~~y~ka  398 (472)
T 4g1t_A          382 LYQMKCEDKAIHHFIEG  398 (472)
T ss_dssp             HHTSSCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHH
Confidence            55789999999998864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.17  E-value=7.2e-11  Score=86.76  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773          141 VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY  220 (233)
Q Consensus       141 eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg  220 (233)
                      ++|++.|+++++++|+++     ..++         ++|.++...|++++|++.|+++++++|++++.+.+++.++..+|
T Consensus         2 ~~a~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNM-----LLRF---------TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhCCCcH-----HHHH---------HHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            468999999999999988     3433         59999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhh
Q 026773          221 GVDEARNRFLEA  232 (233)
Q Consensus       221 ~~dEA~~~~l~~  232 (233)
                      ++++|+..+.++
T Consensus        68 ~~~~A~~~~~~a   79 (115)
T 2kat_A           68 DRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999998864

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.16  E-value=1.6e-10  Score=103.80  Aligned_cols=112  Identities=10%  Similarity=0.079  Sum_probs=98.2

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLL----FRQ---GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~----~~l---GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      ..++...++.++  .++|++..+|+.||.++    ...   ++++++++.+++++++||++.     .. |.        
T Consensus        85 ~~eeL~~~~~~L--~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny-----~a-W~--------  148 (306)
T 3dra_A           85 LYDELDWCEEIA--LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH-----HV-WS--------  148 (306)
T ss_dssp             HHHHHHHHHHHH--HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH-----HH-HH--------
T ss_pred             HHHHHHHHHHHH--HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH-----HH-HH--------
Confidence            466888899998  89999999999999999    777   899999999999999999998     33 43        


Q ss_pred             hhHHHHHHcCCcH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHh
Q 026773          177 KKLIRVSHFNRFE--EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG------VDEARNRFLE  231 (233)
Q Consensus       177 ~rG~al~~lGrye--eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~------~dEA~~~~l~  231 (233)
                      .||.++..+|+++  ++++.+++++++||.|..+|.+++.+...+++      ++++.+.+.+
T Consensus       149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~  211 (306)
T 3dra_A          149 YRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKD  211 (306)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence            5999999999988  99999999999999999988888888888887      7888877654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.16  E-value=1e-10  Score=102.29  Aligned_cols=128  Identities=12%  Similarity=0.053  Sum_probs=101.6

Q ss_pred             HHhccCcchHHHHHHHHhcc-cC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGG-NN---NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG  173 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~-~l---~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~  173 (233)
                      +.+.+-...|...+.+++.. +.   ++..+.++..+|.++..+|++++|+..+++|+++.++..     .+.  ...+.
T Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~--~~~~~  185 (383)
T 3ulq_A          113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE-----AYN--IRLLQ  185 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----TTH--HHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----cch--HHHHH
Confidence            34445667788889888732 11   234679999999999999999999999999999988776     211  23456


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT------EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~------e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|.++..+|++++|++.|++++++.|...      ..+.+++.++..+|++++|...+.++
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            778899999999999999999999999866432      35666788888999999999998765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.16  E-value=9.8e-11  Score=102.45  Aligned_cols=125  Identities=10%  Similarity=0.001  Sum_probs=99.5

Q ss_pred             hccCcchHHHHHHHHhccc-C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773          100 RRLFIPSVSGIWDALTGGN-N----NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~-l----~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ..+-...|...+.+++... .    .|..+.++.++|.++..+|++++|++.|++|+++.|+...    ..    ....+
T Consensus       155 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~----~~~~~  226 (383)
T 3ulq_A          155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----PQ----LMGRT  226 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----HH----HHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----hH----HHHHH
Confidence            3334455666666665210 1    3445789999999999999999999999999999886551    11    23456


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHH-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVA-----QN-PNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~-----ln-P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +.++|.++..+|++++|++.|+++++     .+ |..+..+..++.++..+|++++|...+.++
T Consensus       227 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            77899999999999999999999999     56 777777888899999999999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.16  E-value=2e-11  Score=101.44  Aligned_cols=84  Identities=13%  Similarity=0.041  Sum_probs=74.2

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCc----------HHHHHHHHHHHHcCCC
Q 026773          135 FRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRF----------EEGAEQFRIDVAQNPN  204 (233)
Q Consensus       135 ~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGry----------eeAi~~f~kAL~lnP~  204 (233)
                      -+.+.|++|++.|++|++++|+++     ..+         .++|.++..++++          ++|++.|++||+++|+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~a-----ea~---------~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDA-----DNL---------TRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCH-----HHH---------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCH-----HHH---------HHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            456789999999999999999998     333         3599999999886          5999999999999999


Q ss_pred             CHHHHHHHHHHHHHcC-----------CHHHHHHHHHhh
Q 026773          205 DTEESIWCFLCEAQLY-----------GVDEARNRFLEA  232 (233)
Q Consensus       205 d~e~~~~~~l~~a~Lg-----------~~dEA~~~~l~~  232 (233)
                      ++++++.+|.++..+|           ++++|...|.++
T Consensus        79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA  117 (158)
T 1zu2_A           79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA  117 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence            9999999999998875           899999999865

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.16  E-value=2.4e-10  Score=104.35  Aligned_cols=112  Identities=12%  Similarity=-0.021  Sum_probs=98.2

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR  181 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG--dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a  181 (233)
                      ..++..+++.++  ..+|++..+|.+||.++..+|  +++++++.+++++++||++.      ..|.        .||.+
T Consensus        90 l~~EL~~~~~~L--~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy------~AW~--------~R~~v  153 (331)
T 3dss_A           90 VKAELGFLESCL--RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWD--------YRRFV  153 (331)
T ss_dssp             HHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH------HHHH--------HHHHH
T ss_pred             HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH------HHHH--------HHHHH
Confidence            356778888888  899999999999999999999  49999999999999999998      3344        59999


Q ss_pred             HHHcCC-cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHh
Q 026773          182 VSHFNR-FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL--------------YGVDEARNRFLE  231 (233)
Q Consensus       182 l~~lGr-yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L--------------g~~dEA~~~~l~  231 (233)
                      +..+|+ ++++++.++++++.+|+|..+|.+++.++..+              +.++++.+.+.+
T Consensus       154 l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~  218 (331)
T 3dss_A          154 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN  218 (331)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred             HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence            999999 59999999999999999999999998887776              446777777654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.15  E-value=3.9e-10  Score=102.99  Aligned_cols=113  Identities=12%  Similarity=0.021  Sum_probs=102.4

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd----------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      +.++|..+++.++  .+||++..+|+.||.++..+|+          ++++++.++++++.+|+++     .. |+    
T Consensus        45 ~s~eaL~~t~~~L--~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny-----~a-W~----  112 (331)
T 3dss_A           45 LDESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-----GT-WH----  112 (331)
T ss_dssp             CSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HH-HH----
T ss_pred             CCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH-----HH-HH----
Confidence            7778999999999  9999999999999999998877          7999999999999999998     34 33    


Q ss_pred             hhhhhhHHHHHHcCC--cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHh
Q 026773          173 GIILKKLIRVSHFNR--FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG-VDEARNRFLE  231 (233)
Q Consensus       173 ~a~~~rG~al~~lGr--yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~-~dEA~~~~l~  231 (233)
                          .||.++..+|+  ++++++.++++++++|.|..+|.+++.+...+|. .+++.+.+.+
T Consensus       113 ----hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~  170 (331)
T 3dss_A          113 ----HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS  170 (331)
T ss_dssp             ----HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ----HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence                59999999995  8999999999999999999999999999999998 5888887764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.15  E-value=9.8e-11  Score=86.35  Aligned_cols=124  Identities=10%  Similarity=-0.081  Sum_probs=93.8

Q ss_pred             HhccCcchHHHHHHHHhcccCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSR------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~------~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      ...+-..+|...+.+++  ++.++      .+.++..+|.++..+|++++|++.|++|+++.++..     ...   ...
T Consensus        20 ~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~---~~~   89 (164)
T 3ro3_A           20 YLLGNFRDAVIAHEQRL--LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-----DRA---VEA   89 (164)
T ss_dssp             HHTTCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHH---HHH
T ss_pred             HHhcCHHHHHHHHHHHH--HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----CcH---HHH
Confidence            33444566777777766  32221      236899999999999999999999999999987654     111   124


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN--D----TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~--d----~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++.++|.++...|++++|++.+++++++.+.  +    +..+...+.+...+|++++|...+.++
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            56778999999999999999999999987432  1    334455677788999999999998764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.14  E-value=1.1e-10  Score=100.68  Aligned_cols=130  Identities=14%  Similarity=0.087  Sum_probs=98.0

Q ss_pred             chhHHHhccCcchHHHHHHHHhcccCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773           94 RAPTFTRRLFIPSVSGIWDALTGGNNNS----REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI  169 (233)
Q Consensus        94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P----~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~  169 (233)
                      ....+.+.+-...|...+.+++......    ..+.++.++|.++.. |++++|++.|++|+++.|...     ...   
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~-----~~~---  152 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE-----RLR---  152 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT-----CHH---
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC-----Chh---
Confidence            3344555556677888888877321112    235789999999988 999999999999999998654     111   


Q ss_pred             hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          170 SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT------EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       170 ~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~------e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ....++.++|.++..+|+|++|++.|++++++.|++.      ..+...+.|...+|++++|...|.++
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  221 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES  221 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            1245677899999999999999999999999977543      23444556677789999999998875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.13  E-value=8.3e-11  Score=101.54  Aligned_cols=125  Identities=11%  Similarity=0.013  Sum_probs=98.0

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNS------REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTIS  170 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P------~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~  170 (233)
                      .+...+-+..|...|..++  ++.+      .-+.+|.++|.++..+|++++|+..|++|+++.++..     ...   .
T Consensus        45 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-----~~~---~  114 (307)
T 2ifu_A           45 AFKNAKQLEQAKDAYLQEA--EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-----TPD---T  114 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-----CHH---H
T ss_pred             HHHHcCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-----CHH---H
Confidence            3444455677778888776  3322      2367999999999999999999999999999976544     111   2


Q ss_pred             hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          171 IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND------TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       171 ~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d------~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ...++.++|.++.. |++++|++.|++++++.|..      ...+...+.++..+|++++|+..+.++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34567789999999 99999999999999998754      345566778888999999999998764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.13  E-value=1.5e-09  Score=90.08  Aligned_cols=47  Identities=13%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELD  154 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~----lGdyeeAIadfdkAIeLd  154 (233)
                      ..+|...+.+++  +  |+++.+++.+|.++..    .|++++|++.|++|++++
T Consensus        22 ~~~A~~~~~~a~--~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~   72 (273)
T 1ouv_A           22 FTQAKKYFEKAC--D--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   72 (273)
T ss_dssp             HHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence            344555555554  2  5555666666666666    666666666666666554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.12  E-value=2.5e-10  Score=89.26  Aligned_cols=125  Identities=14%  Similarity=0.072  Sum_probs=94.5

Q ss_pred             HHhccCcchHHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCCccchhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL---DPRQKISGKGAYRFTIS  170 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~----~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL---dP~~~~~~~~~y~~~~~  170 (233)
                      +...+-...|...+.+++..    ...|..+.++.++|.++..+|++++|++.+++|+++   .|+++     ..     
T Consensus        36 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~-----  105 (203)
T 3gw4_A           36 YAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP-----LA-----  105 (203)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-----HH-----
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH-----HH-----
Confidence            33444556677777777621    145677899999999999999999999999999999   33222     01     


Q ss_pred             hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC--CCHH----HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          171 IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP--NDTE----ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       171 ~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP--~d~e----~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ...++.++|.++..+|++++|++.+++++++.+  +++.    .+.+++.+...+|++++|...+.++
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  173 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA  173 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            123566899999999999999999999997643  2332    2345667788999999999998765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.12  E-value=2.6e-10  Score=84.06  Aligned_cols=102  Identities=9%  Similarity=-0.025  Sum_probs=84.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      .+.++..+|.++...|++++|++.+++|+++.|+..     ...   ..+.++.++|.++..+|++++|++.+++++++.
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   79 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----DKA---AERIAYSNLGNAYIFLGEFETASEYYKKTLLLA   79 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-----Cch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999987644     111   124567789999999999999999999999986


Q ss_pred             CCC------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          203 PND------TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       203 P~d------~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++.      ...+.+.+.+...+|++++|...+.++
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           80 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            543      344566677888999999999988764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.11  E-value=4.6e-10  Score=95.56  Aligned_cols=123  Identities=10%  Similarity=-0.050  Sum_probs=95.1

Q ss_pred             CcchHHHHHHHHhcccCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773          103 FIPSVSGIWDALTGGNNNSRE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      -...|...+..++.......+    +.++.++|.++..+|++++|+..|++|+++-...+     ..  ....+.+++++
T Consensus       130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----~~--~~~~~~~~~nl  202 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----DN--EEFDVKVRYNH  202 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-----CC--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----cc--hhHHHHHHHHH
Confidence            446677888888732222222    45899999999999999999999999997543321     00  01234577899


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHhh
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQNPND------TEESIWCFLCEAQLYG-VDEARNRFLEA  232 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~lnP~d------~e~~~~~~l~~a~Lg~-~dEA~~~~l~~  232 (233)
                      |.++..+|+|++|++.+++++++.++.      +..+...|.|+..+|+ +++|...+.++
T Consensus       203 g~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            999999999999999999999987654      6677888999999995 69999988765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.11  E-value=9.1e-11  Score=96.52  Aligned_cols=123  Identities=10%  Similarity=0.073  Sum_probs=98.0

Q ss_pred             HhccCcchHHHHHHHHhcc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccchhhh
Q 026773           99 TRRLFIPSVSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKGAYRF  167 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~------~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~~y~~  167 (233)
                      .+.+-...|...+..++..      ..+|..+.++..+|.++..+|++++|++.|++++++.     ++.+     ..  
T Consensus        80 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~--  152 (311)
T 3nf1_A           80 RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP-----DV--  152 (311)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-----HH--
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh-----HH--
Confidence            3334445666777776621      2257788999999999999999999999999999995     3333     11  


Q ss_pred             hhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          168 TISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ--------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       168 ~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l--------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                          ..++.++|.++...|++++|++.|++++++        +|.....+...+.++..+|++++|...+.++
T Consensus       153 ----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          153 ----AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             ----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                234567999999999999999999999998        6666666777788899999999999998764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.11  E-value=2.6e-09  Score=90.89  Aligned_cols=127  Identities=6%  Similarity=-0.087  Sum_probs=99.7

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREA------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI  169 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~  169 (233)
                      ..+.+.+-.+.|...+..++  +..|...      ..++.+|.++...|++++|+..|++|+++.++..     .. +  
T Consensus        83 ~~~~~~~~y~~A~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~-~--  152 (293)
T 2qfc_A           83 IMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-----DV-Y--  152 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS-----CT-T--
T ss_pred             HHHHHhhhHHHHHHHHHHHh--ccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-----ch-H--
Confidence            34445555567777888777  5555544      4577899999999999999999999999988654     11 1  


Q ss_pred             hhhhhhhhhHHHHHHcCCcHHHHHHHHHHH---HcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          170 SIVGIILKKLIRVSHFNRFEEGAEQFRIDV---AQNPNDT----EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       170 ~~~~a~~~rG~al~~lGryeeAi~~f~kAL---~lnP~d~----e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ..+.+++++|.++..+|++++|++.|++++   +..|++.    ..+.+.+.++..+|++++|...+.++
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            124577889999999999999999999999   5567654    45667788899999999999998764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.10  E-value=1e-09  Score=91.10  Aligned_cols=95  Identities=11%  Similarity=0.061  Sum_probs=72.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH----cCCcHHHHHHH
Q 026773          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH----FNRFEEGAEQF  195 (233)
Q Consensus       120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~----lGryeeAi~~f  195 (233)
                      +|+++.+++.+|.++...|++++|+..|++|++  |+++     ..++         ++|.++..    .|++++|++.|
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~-----~a~~---------~lg~~~~~g~~~~~~~~~A~~~~   65 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN-----SGCF---------NLGVLYYQGQGVEKNLKKAASFY   65 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH-----HHHH---------HHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH-----HHHH---------HHHHHHHcCCCcCCCHHHHHHHH
Confidence            689999999999999999999999999999999  5554     2323         47777777    77778888888


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773          196 RIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA  232 (233)
Q Consensus       196 ~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~  232 (233)
                      +++++++  +++.+..++.++..    .+++++|...+.++
T Consensus        66 ~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a  104 (273)
T 1ouv_A           66 AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA  104 (273)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHH
Confidence            7777775  56666777777777    77777777777653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.10  E-value=1.6e-10  Score=95.04  Aligned_cols=127  Identities=7%  Similarity=0.038  Sum_probs=100.6

Q ss_pred             hhHHHhccCcchHHHHHHHHhcc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccc
Q 026773           95 APTFTRRLFIPSVSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKG  163 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~------~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~  163 (233)
                      ...+.+.+-...|...+..++..      ..+|..+.++..+|.++...|++++|+..|++++++.     ++.+     
T Consensus        34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----  108 (311)
T 3nf1_A           34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP-----  108 (311)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH-----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh-----
Confidence            34455556667788888888721      1478889999999999999999999999999999984     3222     


Q ss_pred             hhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          164 AYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN--------PNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       164 ~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln--------P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .      ...++.++|.++...|++++|++.|++++++.        |.....+..++.++..+|++++|...+.++
T Consensus       109 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          109 A------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             H------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             H------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            1      12345679999999999999999999999984        444555666778888999999999998764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.09  E-value=9.1e-10  Score=93.73  Aligned_cols=128  Identities=8%  Similarity=-0.093  Sum_probs=99.2

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAV------VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT  168 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~------Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~  168 (233)
                      +..+.+.+-.+.+..++.+++  +..+.+++      .+..+|.++...|++++|+..|++|+++.+...     ...  
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-----~~~--  152 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-----DVY--  152 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS-----CTT--
T ss_pred             HHHHHHHhhHHHHHHHHHHHh--ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc-----cHH--
Confidence            444555666778999999988  66666655      334588888889999999999999999887765     121  


Q ss_pred             hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          169 ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       169 ~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       ..+.+++++|.++..+|++++|++.|++++++       .+..+..+.+.+.++..+|++++|...+.++
T Consensus       153 -~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          153 -QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             23457789999999999999999999999952       1222334567788899999999999988764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.08  E-value=2.8e-11  Score=86.44  Aligned_cols=92  Identities=7%  Similarity=0.089  Sum_probs=76.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-..+|...|++++  +++|+++.+|.++|.++..+|++++|+++|++|++++|++..    .. +   ...++
T Consensus        12 ~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~-~---~~~~~   81 (111)
T 2l6j_A           12 NSLFKQGLYREAVHCYDQLI--TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH----VA-I---RSKLQ   81 (111)
T ss_dssp             HHHHTTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS----HH-H---HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH----HH-H---HHHHH
Confidence            34445556678999999999  899999999999999999999999999999999999999841    11 1   13456


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~k  197 (233)
                      .++|.++..+|++++|++.+++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHHH
Confidence            6799999999999999887764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.08  E-value=1.6e-10  Score=100.25  Aligned_cols=127  Identities=9%  Similarity=-0.033  Sum_probs=102.0

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREA----VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISI  171 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a----~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~  171 (233)
                      ..+.+.+-...|...+..++  +++|+++    .+|..+|.++..+|++++|++.|++|+++......   ..     ..
T Consensus        56 ~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-----~~  125 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAI--QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND---RL-----GE  125 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HH-----HH
T ss_pred             HHHHHhCcHHHHHHHHHHHH--HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC---ch-----HH
Confidence            44555666778999999999  7899987    68999999999999999999999999999422110   00     11


Q ss_pred             hhhhhhhHHHHHHcCCcHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 026773          172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQ------NPNDTEESIWCFLCEAQLYG-----------------VDEARNR  228 (233)
Q Consensus       172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~l------nP~d~e~~~~~~l~~a~Lg~-----------------~dEA~~~  228 (233)
                      ..++.++|.++..+|++++|++.|++++++      +|.....+..++.++..+|+                 +++|...
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            235567999999999999999999999999      56666677778888889999                 8888887


Q ss_pred             HHhh
Q 026773          229 FLEA  232 (233)
Q Consensus       229 ~l~~  232 (233)
                      +.++
T Consensus       206 ~~~a  209 (411)
T 4a1s_A          206 YQEN  209 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.07  E-value=1.2e-09  Score=85.32  Aligned_cols=118  Identities=8%  Similarity=0.000  Sum_probs=90.1

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      ..|..+...+.  ...+..+.++..+|.++..+|++++|++.|++|+++-.....     .   .....++.++|.++..
T Consensus         9 ~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~---~~~~~~~~~l~~~~~~   78 (203)
T 3gw4_A            9 ALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----H---TAEHRALHQVGMVERM   78 (203)
T ss_dssp             HHHHHHHHHHH--TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----H---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----c---HHHHHHHHHHHHHHHH
Confidence            44555443444  223378999999999999999999999999999997554331     1   0123466789999999


Q ss_pred             cCCcHHHHHHHHHHHHc---CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQ---NPNDT----EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~l---nP~d~----e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++++|++.+++++++   .++++    ..+...+.+...+|++++|...+.++
T Consensus        79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999998   55443    33455677788999999999988764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.06  E-value=4.4e-10  Score=98.58  Aligned_cols=127  Identities=9%  Similarity=-0.156  Sum_probs=100.4

Q ss_pred             HHhccCcchHHHHHHHHhcc-cC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGG-NN----NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~-~l----~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      +...+-...|...+.+++.. ..    .+..+.++.++|.++..+|++++|++.|++|+++.++...    ..    ...
T Consensus       151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----~~----~~~  222 (378)
T 3q15_A          151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN----DR----FIA  222 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----HH----HHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC----HH----HHH
Confidence            33344445666666666521 11    2235789999999999999999999999999999764431    11    234


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVA-----QNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~-----lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++.++|.++..+|++++|++.|+++++     .+|..+..+...+.+..++|++++|...+.++
T Consensus       223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  287 (378)
T 3q15_A          223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG  287 (378)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5778899999999999999999999999     88888888888899999999999999998764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.05  E-value=5.7e-10  Score=102.75  Aligned_cols=112  Identities=14%  Similarity=0.139  Sum_probs=100.5

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-G-DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR  181 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l-G-dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a  181 (233)
                      ..++...++.++  ..+|++..+|..||.++..+ + +++++++.++++|++||++.      ..|.        .||.+
T Consensus       105 l~eEL~~~~~~L--~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy------~AW~--------~R~wv  168 (349)
T 3q7a_A          105 LEDELRLMNEFA--VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY------HTWA--------YLHWL  168 (349)
T ss_dssp             HHHHHHHHHHHH--HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH------HHHH--------HHHHH
T ss_pred             HHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH------HHHH--------HHHHH
Confidence            456788888888  99999999999999999998 8 99999999999999999998      3343        59999


Q ss_pred             HHHcCCcH--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHh
Q 026773          182 VSHFNRFE--------EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG-------VDEARNRFLE  231 (233)
Q Consensus       182 l~~lGrye--------eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~-------~dEA~~~~l~  231 (233)
                      +..+|+++        ++++.+++++++||.|..+|.+++.+..++++       ++++.+.+.+
T Consensus       169 l~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~  233 (349)
T 3q7a_A          169 YSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILK  233 (349)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            99999998        99999999999999999999999999988887       6788877654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=7.2e-10  Score=101.94  Aligned_cols=111  Identities=14%  Similarity=0.068  Sum_probs=92.6

Q ss_pred             hHHHHHHHHhcccCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hCCCCCCCccchhhhhhh
Q 026773          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFR-------QGDVV-------GSVAEFDKAIE-LDPRQKISGKGAYRFTIS  170 (233)
Q Consensus       106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~-------lGdye-------eAIadfdkAIe-LdP~~~~~~~~~y~~~~~  170 (233)
                      .+..+|.+++  +.+|+++++|..+|..+..       .|+++       +|++.|++|++ ++|++.      ..|.  
T Consensus       256 ~a~~~y~~al--~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~------~l~~--  325 (530)
T 2ooe_A          256 RVMFAYEQCL--LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------LLYF--  325 (530)
T ss_dssp             HHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH------HHHH--
T ss_pred             HHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH------HHHH--
Confidence            3456888888  8899999999999999987       79987       99999999998 899887      3333  


Q ss_pred             hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          171 IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT-EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       171 ~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~-e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                            .+|..+...|++++|.+.|+++++++|+++ ..|...+.++.++|+.++|+..|.++
T Consensus       326 ------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  382 (530)
T 2ooe_A          326 ------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  382 (530)
T ss_dssp             ------HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                  589999999999999999999999999886 35555555666788888988888764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.04  E-value=7.5e-10  Score=82.87  Aligned_cols=74  Identities=15%  Similarity=0.123  Sum_probs=67.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          120 NSREAVVAIRRGMLLFRQGD---VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       120 ~P~~a~Ay~~RG~a~~~lGd---yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      +|++++++..+|.+++..++   .++|...+++|+++||+++     ...+.         +|.+++..|+|++|++.|+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~-----rA~~~---------lg~~~~~~g~y~~Ai~~w~   67 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE-----AALSL---------IANDHFISFRFQEAIDTWV   67 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH-----HHHHH---------HHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH-----HHHHH---------HHHHHHHcCCHHHHHHHHH
Confidence            69999999999999998877   7999999999999999998     45444         8999999999999999999


Q ss_pred             HHHHcCCCCHH
Q 026773          197 IDVAQNPNDTE  207 (233)
Q Consensus       197 kAL~lnP~d~e  207 (233)
                      ++++.+|.++.
T Consensus        68 ~~l~~~p~~~~   78 (93)
T 3bee_A           68 LLLDSNDPNLD   78 (93)
T ss_dssp             HHHTCCCTTCC
T ss_pred             HHHhhCCCCcc
Confidence            99999998543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.04  E-value=3e-10  Score=96.90  Aligned_cols=125  Identities=8%  Similarity=-0.146  Sum_probs=89.8

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSRE------AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISI  171 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~------a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~  171 (233)
                      +.+.+-...|...+.+++  ++.|+.      +.++.++|.++..+|++++|+..+++++++.|+...     ..   ..
T Consensus       197 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~---~~  266 (406)
T 3sf4_A          197 HYLLGNFRDAVIAHEQRL--LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----RA---VE  266 (406)
T ss_dssp             HHHHTBHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH---HH
T ss_pred             HHHccCHHHHHHHHHHHH--HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-----ch---HH
Confidence            333444556666666666  333322      348888888888888888888888888888876541     11   12


Q ss_pred             hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND------TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d------~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ..++.++|.++...|++++|++.|++++++.+..      +..+..++.++..+|++++|...+.++
T Consensus       267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  333 (406)
T 3sf4_A          267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  333 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4466678999999999999999999999886543      445556677778889999999888764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.03  E-value=3.6e-10  Score=92.56  Aligned_cols=126  Identities=7%  Similarity=-0.046  Sum_probs=99.1

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSRE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      .+.+.+-.+.|...+.+++  +++|++    +.++..+|.++...|++++|++.+++|+++.+....    .    ...+
T Consensus        14 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~----~~~~   83 (338)
T 3ro2_A           14 RLCKSGDCRAGVSFFEAAV--QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD----Q----LGEA   83 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----H----HHHH
T ss_pred             HHHHhccHHHHHHHHHHHH--hhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc----c----HHHH
Confidence            4445566688999999998  788998    578999999999999999999999999998543220    0    0123


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCC--------------------HHHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT------EESIWCFLCEAQLYG--------------------VDEAR  226 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~------e~~~~~~l~~a~Lg~--------------------~dEA~  226 (233)
                      .++..+|.++...|++++|++.+++++++.|...      ..+...+.++..+|+                    +++|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            4566799999999999999999999999876432      245566777888899                    88888


Q ss_pred             HHHHhh
Q 026773          227 NRFLEA  232 (233)
Q Consensus       227 ~~~l~~  232 (233)
                      ..+.++
T Consensus       164 ~~~~~a  169 (338)
T 3ro2_A          164 DLYEEN  169 (338)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.03  E-value=1.9e-09  Score=99.11  Aligned_cols=121  Identities=5%  Similarity=0.000  Sum_probs=79.6

Q ss_pred             chHHHHHHHHhccc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------------
Q 026773          105 PSVSGIWDALTGGN-NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------------  169 (233)
Q Consensus       105 ~~a~~i~~~~i~~~-l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------------  169 (233)
                      ..|..++..++  + ++|+++.+|..+|.++...|++++|++.|++|++++|+++     ...|..              
T Consensus       303 ~~A~~~~~~Al--~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~~A  375 (530)
T 2ooe_A          303 DEAANIYERAI--STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-----TLVYIQYMKFARRAEGIKSG  375 (530)
T ss_dssp             HHHHHHHHHHT--TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc-----hHHHHHHHHHHHHhcCHHHH
Confidence            34666676666  5 5677777777777777777777777777777777777654     222220              


Q ss_pred             ------h------hhhhhhhhHHH-HHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          170 ------S------IVGIILKKLIR-VSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       170 ------~------~~~a~~~rG~a-l~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                            +      -...+...+.+ +...|++++|.+.|+++++.+|++++.+...+..+.++|+.++|+..|.++
T Consensus       376 ~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          376 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence                  0      01122233333 235788888888888888888888876655555666788888888887764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.02  E-value=6.4e-10  Score=96.38  Aligned_cols=103  Identities=16%  Similarity=0.023  Sum_probs=89.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV  199 (233)
Q Consensus       120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL  199 (233)
                      +|..+..+..+|..+...|++++|++.|++|++++|+++     ...     ..++..+|.++..+|++++|++.|++++
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----RTL-----SAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----HHH-----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----hHH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            356678889999999999999999999999999999876     211     2356679999999999999999999999


Q ss_pred             Hc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          200 AQ------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       200 ~l------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++      +|.....+..++.++..+|++++|...+.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  152 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH  152 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            98      6767777788888999999999999998764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.02  E-value=1.6e-09  Score=92.44  Aligned_cols=102  Identities=15%  Similarity=0.062  Sum_probs=79.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      +..+.++..+|.++...|++++|+..|+++++++|+++     ..     ...++..+|.++...|++++|++.|+++++
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   75 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----KT-----LSAIYSQLGNAYFYLHDYAKALEYHHHDLT   75 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----HH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----HH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999988775     21     123456789999999999999999998888


Q ss_pred             c------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          201 Q------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       201 l------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +      +|..+..+...+.++..+|++++|...+.++
T Consensus        76 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  113 (406)
T 3sf4_A           76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH  113 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7      3444555666777788889999998887654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.01  E-value=2.3e-10  Score=81.50  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=74.2

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~-Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ..+.+.+-...|...+..++  +++|+++. +|+.+|.++..+|++++|++.|+++++++|+++     .. +.      
T Consensus         8 ~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~-~~------   73 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFL--QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-----AL-QA------   73 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH--HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----HH-HH------
T ss_pred             HHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----HH-HH------
Confidence            34445556678999999999  89999999 999999999999999999999999999999988     22 22      


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT  206 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~  206 (233)
                                .+.+++|++.|++++..+|+++
T Consensus        74 ----------~~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           74 ----------RKMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             ----------HHHHHHHHHHHCCTTHHHHCCS
T ss_pred             ----------HHHHHHHHHHHHHHhccCcccc
Confidence                      1778899999999999998765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.99  E-value=1.2e-09  Score=97.93  Aligned_cols=122  Identities=7%  Similarity=-0.072  Sum_probs=99.6

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+...+-..+|...++.++  ..+|.+. +.+.+|.+++..|++++|++.|+++++..++..        -    .+++
T Consensus       110 ~~L~~~g~y~eA~~~l~~~~--~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~--------~----~~a~  174 (282)
T 4f3v_A          110 ACEAAQGNYADAMEALEAAP--VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL--------A----GAAG  174 (282)
T ss_dssp             HHHHHHTCHHHHHHHHTSSC--CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH--------H----HHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHH--hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc--------H----HHHH
Confidence            44555555677888887777  6789888 999999999999999999999998887642110        0    1244


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQN--PN-DTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~ln--P~-d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++|.++..+|++++|++.|++++.-+  |. .++..+++++|+.++|+.+||+..|.++
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            569999999999999999999999655  55 6678899999999999999999999875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.99  E-value=2.4e-09  Score=87.64  Aligned_cols=100  Identities=15%  Similarity=0.065  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-  201 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-  201 (233)
                      +...+..+|..++..|++++|+..|+++++++|+++     ..     ...++..+|.++...|++++|++.+++++++ 
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----KT-----LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----HH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----HH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            356788999999999999999999999999999876     21     1235667999999999999999999999988 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 -----NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 -----nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                           .|..+..+...+.++..+|++++|...+.++
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  109 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH  109 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                 4445556667778888999999999988764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.97  E-value=1.5e-09  Score=95.12  Aligned_cols=128  Identities=8%  Similarity=0.039  Sum_probs=100.7

Q ss_pred             HHhccCcchHHHHHHHHhccc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGN----NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG  173 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~----l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~  173 (233)
                      +.+.+-...|...+.+++...    -.|..+.++.++|.++..+|++++|+..+++|+++.++..     .+.  ...+.
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----~~~--~~~~~  183 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-----LYS--IRTIQ  183 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-----TCH--HHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-----Cch--hhHHH
Confidence            344455677888888887321    1234678999999999999999999999999999988765     211  13456


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPN--D----TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~--d----~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++++|.++..+|++++|++.|++++++.+.  +    ...+.+++.++..+|++++|...+.++
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7889999999999999999999999997431  2    234556788888999999999998875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.88  E-value=5.3e-09  Score=76.39  Aligned_cols=57  Identities=11%  Similarity=0.019  Sum_probs=53.8

Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++|.+++.+|++++|++.|+++++++|+++..+.+++.|+..+|++++|+..+.++
T Consensus        11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A           11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            359999999999999999999999999999999999999999999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.84  E-value=1.7e-08  Score=82.96  Aligned_cols=109  Identities=10%  Similarity=0.016  Sum_probs=91.3

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--CCCCccchhhhhhhhhhhhhhh
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPR--QKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~----lGdyeeAIadfdkAIeLdP~--~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      ..|...|.++.    ++.++.+++++|.++..    .+|+++|+..|++|++++|.  ++     .         +++++
T Consensus        70 ~~A~~~~~~A~----~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~-----~---------a~~~L  131 (212)
T 3rjv_A           70 PQARQLAEKAV----EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV-----D---------AQMLL  131 (212)
T ss_dssp             HHHHHHHHHHH----HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH-----H---------HHHHH
T ss_pred             HHHHHHHHHHH----HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH-----H---------HHHHH
Confidence            55777777775    57899999999999998    89999999999999999984  23     2         23459


Q ss_pred             HHHHHH----cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHhh
Q 026773          179 LIRVSH----FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL-Y-----GVDEARNRFLEA  232 (233)
Q Consensus       179 G~al~~----lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L-g-----~~dEA~~~~l~~  232 (233)
                      |.++..    .+++++|++.|++++++ |+++++..+++.++... |     +.++|...|.++
T Consensus       132 g~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          132 GLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            999999    89999999999999999 77788888888887753 3     799999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.83  E-value=1.8e-08  Score=86.98  Aligned_cols=121  Identities=8%  Similarity=-0.045  Sum_probs=93.8

Q ss_pred             cCcchHHHHHHHHhcccCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773          102 LFIPSVSGIWDALTGGNNNSRE-A----VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus       102 ~~~~~a~~i~~~~i~~~l~P~~-a----~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      +-.+.+...+.+++  +..|.+ +    .++..+|.++...|++++|++.+++|+++.|+...     ...   ...++.
T Consensus        28 g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~---~~~~~~   97 (373)
T 1hz4_A           28 GNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-----WHY---ALWSLI   97 (373)
T ss_dssp             TCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHH---HHHHHH
T ss_pred             CCHHHHHHHHHHHH--HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----HHH---HHHHHH
Confidence            34566777888877  545543 3    37889999999999999999999999999987651     211   233456


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNP--------NDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP--------~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++|.++...|++++|++.+++++++.+        .....+.+++.++..+|++++|...+.++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG  161 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            799999999999999999999999863        22334455677788999999999988764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.80  E-value=2.1e-08  Score=82.30  Aligned_cols=108  Identities=10%  Similarity=-0.041  Sum_probs=68.3

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG----DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG----dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      ...|...|.+++    +++++.+++++|.++.. |    |+++|+..|++|++  ++++     .         +++++|
T Consensus        34 ~~~A~~~~~~a~----~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~-----~---------a~~~Lg   92 (212)
T 3rjv_A           34 YQKAEYWAQKAA----AQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSK-----S---------GEIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHH----HTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCH-----H---------HHHHHH
T ss_pred             HHHHHHHHHHHH----HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCH-----H---------HHHHHH
Confidence            344445555444    23556666666666655 4    66666666666643  2333     2         233577


Q ss_pred             HHHHH----cCCcHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773          180 IRVSH----FNRFEEGAEQFRIDVAQNP--NDTEESIWCFLCEAQ----LYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~----lGryeeAi~~f~kAL~lnP--~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~  232 (233)
                      .++..    .+++++|++.|+++++.+|  ++++++..++.++..    .+++++|...|.++
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            77776    7788888888888887777  347777777777777    67778887777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.78  E-value=2.7e-08  Score=68.49  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+.+.+-..+|...+..++  +++|+++.++..+|.++...|++++|+..|+++++++|+++     ..+.         
T Consensus        18 ~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~---------   81 (91)
T 1na3_A           18 AYYKQGDYDEAIEYYQKAL--ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAKQ---------   81 (91)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred             HHHHccCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH-----HHHH---------
Confidence            3444555678889999998  88999999999999999999999999999999999999987     3333         


Q ss_pred             hhHHHHHHcC
Q 026773          177 KKLIRVSHFN  186 (233)
Q Consensus       177 ~rG~al~~lG  186 (233)
                      ++|.++..+|
T Consensus        82 ~l~~~~~~~g   91 (91)
T 1na3_A           82 NLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            4888887654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.74  E-value=3.5e-09  Score=95.00  Aligned_cols=122  Identities=15%  Similarity=0.096  Sum_probs=92.4

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-h-----
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRR-------GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT-I-----  169 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~R-------G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~-~-----  169 (233)
                      -...|...|.+++  +++|..+++|..|       |.++..++++.+++..+.+++++.|+...     ..+. .     
T Consensus        21 d~~~A~~~F~~a~--~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~-----a~~~~~g~y~~   93 (282)
T 4f3v_A           21 SEARSLDLFTEIT--NYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN-----ARIAIGGLYGD   93 (282)
T ss_dssp             CHHHHHHHHHHHH--HHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC-----CEEECCTTTCC
T ss_pred             CHHHHHHHHHHHH--HhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh-----hhhccCCcccc
Confidence            3467888999999  9999999999999       99999999999999999999999998762     2111 0     


Q ss_pred             ----------------------------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC--HH
Q 026773          170 ----------------------------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND--TE  207 (233)
Q Consensus       170 ----------------------------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d--~e  207 (233)
                                                              .-+ +.+.+|.+++..||+++|++.|+++++..++.  .+
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~  172 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA  172 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence                                                    003 55566666666666666666666665543221  24


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          208 ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       208 ~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+++++.++..+|+++||...|.++
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a  197 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEA  197 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6788888888999999999888765

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.73  E-value=8.6e-08  Score=71.43  Aligned_cols=84  Identities=12%  Similarity=0.059  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      ++.-.+.+|..++..|+|+.|+..|++|++..+....    .   .....+++.++|.+++.+|++++|+..++++++++
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~----~---~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI----S---TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----C---SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC----C---cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            5677889999999999999999999999998643320    0   00123566789999999999999999999999999


Q ss_pred             CCCHHHHHHHH
Q 026773          203 PNDTEESIWCF  213 (233)
Q Consensus       203 P~d~e~~~~~~  213 (233)
                      |+++....+..
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            99988755544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.72  E-value=4.2e-08  Score=84.73  Aligned_cols=125  Identities=13%  Similarity=0.065  Sum_probs=91.8

Q ss_pred             hccCcchHHHHHHHHhcccCCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773          100 RRLFIPSVSGIWDALTGGNNNS--RE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG  173 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P--~~----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~  173 (233)
                      ..+-...+...+.+++  ++.|  .+    +.++.++|.++..+|++++|++.+++++++.+....    ...  .....
T Consensus        65 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~----~~~--~~~~~  136 (373)
T 1hz4_A           65 CKGELTRSLALMQQTE--QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL----EQL--PMHEF  136 (373)
T ss_dssp             HHTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----TTS--THHHH
T ss_pred             hcCcHHHHHHHHHHHH--HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc----ccC--cHHHH
Confidence            3444566777777776  3222  22    355789999999999999999999999999764331    000  01123


Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPND-----TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d-----~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++.++|.+++..|++++|.+.+++++++.|..     ...+...+.+....|++++|...+.++
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45679999999999999999999999998853     234455667778899999999988764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.70  E-value=3.3e-08  Score=94.04  Aligned_cols=127  Identities=9%  Similarity=-0.022  Sum_probs=98.1

Q ss_pred             hHHHhccCcchHHHHHHHHhc------ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCCCCccch
Q 026773           96 PTFTRRLFIPSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-----DPRQKISGKGA  164 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~------~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-----dP~~~~~~~~~  164 (233)
                      ..+...+-..+|+.++.+++.      +..+|.-+.++.++|.++..+|+|++|+..+++|+++     .|+++      
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp------  390 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA------  390 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH------
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH------
Confidence            344455566778888887763      1234445578999999999999999999999999987     46555      


Q ss_pred             hhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCCHHHH---HHHHHHHHHcCCHHHHHHHHHhhC
Q 026773          165 YRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPNDTEES---IWCFLCEAQLYGVDEARNRFLEAR  233 (233)
Q Consensus       165 y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d~e~~---~~~~l~~a~Lg~~dEA~~~~l~~~  233 (233)
                           .++..++|+|.+|..+|+|++|+..|++|+++     .|++|...   ..+..|...++.+++|...+.++|
T Consensus       391 -----~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          391 -----QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 23446789999999999999999999999985     68887653   345566777888899888776654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.68  E-value=7.6e-08  Score=79.61  Aligned_cols=97  Identities=11%  Similarity=0.148  Sum_probs=80.9

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-CC-CCCCccchhhhhhhhhhhhhhhH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELD-PR-QKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG---dyeeAIadfdkAIeLd-P~-~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      ..++.-|....  +.+|.+.++.++.|+++...+   +.++||..++..++.+ |. ..     .+.|         ++|
T Consensus        15 ~~~~~~y~~e~--~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r-----d~lY---------~LA   78 (152)
T 1pc2_A           15 LKFEKKFQSEK--AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR-----DYVF---------YLA   78 (152)
T ss_dssp             HHHHHHHHHHH--HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH-----HHHH---------HHH
T ss_pred             HHHHHHHHHHH--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchH-----HHHH---------HHH
Confidence            34566677666  678999999999999999998   7779999999999999 73 23     3444         499


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  217 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a  217 (233)
                      +.++++|+|++|.+.++++++++|++.++......+..
T Consensus        79 v~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~  116 (152)
T 1pc2_A           79 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  116 (152)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999988666555543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.58  E-value=1.9e-07  Score=84.96  Aligned_cols=103  Identities=13%  Similarity=-0.035  Sum_probs=84.6

Q ss_pred             cCCCCCHHHHHHHHHHHHH---c--CC------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc-
Q 026773          118 NNNSREAVVAIRRGMLLFR---Q--GD------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF-  185 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~---l--Gd------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l-  185 (233)
                      +.+|+++++++..|.+..-   .  |+      ..+|.+..+|||++||+...   ...         +.-+|..|+.. 
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~---GsA---------~~~LG~lY~~vP  213 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE---GAV---------WNVLTKFYAAAP  213 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH---HHH---------HHHHHHHHHHSC
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc---CHH---------HHHHHHHHHhCC
Confidence            5789999999999998854   2  33      57899999999999998430   023         23489999995 


Q ss_pred             ----CCcHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHhh
Q 026773          186 ----NRFEEGAEQFRIDVAQNPND-TEESIWCFLCEAQ-LYGVDEARNRFLEA  232 (233)
Q Consensus       186 ----GryeeAi~~f~kAL~lnP~d-~e~~~~~~l~~a~-Lg~~dEA~~~~l~~  232 (233)
                          |+.++|.+.|++|++++|+. .+..+..+--++. .|+.++|+..+.+|
T Consensus       214 p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          214 ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                99999999999999999975 9888888777776 59999999998875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.54  E-value=1e-07  Score=88.84  Aligned_cols=126  Identities=10%  Similarity=0.040  Sum_probs=87.5

Q ss_pred             CCcchhhccccccccccccccccchhHHHhccCc-chHH---HHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773           71 APLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFI-PSVS---GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAE  146 (233)
Q Consensus        71 ~~~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~-~~a~---~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIad  146 (233)
                      .-+.+++..+|.|+.......--.+......... ....   .....+....++|+++.+|..+|.++...|++++|++.
T Consensus       220 ~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~  299 (372)
T 3ly7_A          220 ELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQA  299 (372)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            3366777888888766554222111001111000 0111   11222233468899999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773          147 FDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC  212 (233)
Q Consensus       147 fdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~  212 (233)
                      +++|+++||+..      .+         .-+|.++...|++++|++.|++|++++|.++ .+.|+
T Consensus       300 l~rAl~Ln~s~~------a~---------~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~  349 (372)
T 3ly7_A          300 INTGIDLEMSWL------NY---------VLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI  349 (372)
T ss_dssp             HHHHHHHCCCHH------HH---------HHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred             HHHHHhcCCCHH------HH---------HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence            999999997422      22         2489999999999999999999999999876 45555

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.49  E-value=1.9e-07  Score=84.92  Aligned_cols=88  Identities=9%  Similarity=0.015  Sum_probs=74.4

Q ss_pred             chHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-CCCccchhhhhhhhhhhhh
Q 026773          105 PSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIELDPRQ-KISGKGAYRFTISIVGIIL  176 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~l-----GdyeeAIadfdkAIeLdP~~-~~~~~~~y~~~~~~~~a~~  176 (233)
                      +.+.....+++  ++||+  +..+|..+|..|...     |+.++|.+.|+|||+|+|+. .     ....         
T Consensus       180 ~~A~a~lerAl--eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i-----d~~v---------  243 (301)
T 3u64_A          180 HAAVMMLERAC--DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP-----DHHI---------  243 (301)
T ss_dssp             HHHHHHHHHHH--HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS-----HHHH---------
T ss_pred             HHHHHHHHHHH--HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc-----hHHH---------
Confidence            56777777788  99999  778999999999995     99999999999999999975 5     2222         


Q ss_pred             hhHHHHHH-cCCcHHHHHHHHHHHHcCCCC-HHH
Q 026773          177 KKLIRVSH-FNRFEEGAEQFRIDVAQNPND-TEE  208 (233)
Q Consensus       177 ~rG~al~~-lGryeeAi~~f~kAL~lnP~d-~e~  208 (233)
                      ..|..+.. .|++++|.+.++++++.+|.. |+.
T Consensus       244 ~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~  277 (301)
T 3u64_A          244 TYADALCIPLNNRAGFDEALDRALAIDPESVPHN  277 (301)
T ss_dssp             HHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence            36888877 599999999999999999984 543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.48  E-value=1.7e-06  Score=78.72  Aligned_cols=93  Identities=16%  Similarity=0.022  Sum_probs=61.5

Q ss_pred             CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH----cCCcHHHHHH
Q 026773          122 REAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH----FNRFEEGAEQ  194 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lG---dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~----lGryeeAi~~  194 (233)
                      .++++++++|.++...|   ++++|++.|++|++.+  +              .++++++|.++..    .+++++|+++
T Consensus       326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~--------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~  389 (490)
T 2xm6_A          326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--E--------------KAAQFNLGNALLQGKGVKKDEQQAAIW  389 (490)
T ss_dssp             TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--C--------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--C--------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            34445555555554444   4555555555555442  1              2344568888888    7888888888


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773          195 FRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA  232 (233)
Q Consensus       195 f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~  232 (233)
                      |+++++.+  +++.+.+++.++..    .+++++|...|.++
T Consensus       390 ~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          390 MRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            88888864  57777777777777    78888888888764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.48  E-value=2e-06  Score=66.72  Aligned_cols=104  Identities=13%  Similarity=-0.019  Sum_probs=80.5

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      +.|...|.++.  +..  ++.+.  +|.++...+.+++|+..|++|.+.+  ++     ..         ++++|.++..
T Consensus        12 ~~A~~~~~~aa--~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~~-----~a---------~~~Lg~~y~~   69 (138)
T 1klx_A           12 KKAIQYYVKAC--ELN--EMFGC--LSLVSNSQINKQKLFQYLSKACELN--SG-----NG---------CRFLGDFYEN   69 (138)
T ss_dssp             HHHHHHHHHHH--HTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT--CH-----HH---------HHHHHHHHHH
T ss_pred             HHHHHHHHHHH--cCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC--CH-----HH---------HHHHHHHHHc
Confidence            45667777776  444  44444  8998888888999999999999873  33     22         2358998888


Q ss_pred             ----cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773          185 ----FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA  232 (233)
Q Consensus       185 ----lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~  232 (233)
                          .+++++|++.|++|.+.  .++++..+++.++..    .++.++|...|.++
T Consensus        70 G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           70 GKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence                88999999999999887  668888888888887    78899998888764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.46  E-value=5.1e-07  Score=84.14  Aligned_cols=111  Identities=8%  Similarity=-0.018  Sum_probs=83.4

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCH----HHHHHH----HH--HHHhhCCCCCCCccchhhhhhhhhhh
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV----VGSVAE----FD--KAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdy----eeAIad----fd--kAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ..|..++.+++  +++|+++.+|..+++++.....+    ...++.    +.  .+++++|..+     ..++.      
T Consensus       216 ~~A~~l~e~Al--~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a-----~~~~a------  282 (372)
T 3ly7_A          216 NRASELLGEIV--QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS-----IIYQI------  282 (372)
T ss_dssp             HHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH-----HHHHH------
T ss_pred             HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH-----HHHHH------
Confidence            56788888888  89999999999988888632111    111121    22  2336677776     34333      


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                         .+.++...|++++|++.+++|+++||+ ...+..++.+....|+.++|.+.+.++
T Consensus       283 ---lal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~A  336 (372)
T 3ly7_A          283 ---KAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTA  336 (372)
T ss_dssp             ---HHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---HHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               788888899999999999999999985 566778889999999999999999764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.42  E-value=4.4e-06  Score=75.93  Aligned_cols=106  Identities=9%  Similarity=-0.047  Sum_probs=74.0

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l-----GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      ..|...+..+.    +..++++++.+|.++...     +|+++|+..|++|++.++..                +++++|
T Consensus       276 ~~A~~~~~~a~----~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~----------------a~~~lg  335 (490)
T 2xm6_A          276 LKALEWYRKSA----EQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT----------------AQANLG  335 (490)
T ss_dssp             HHHHHHHHHHH----TTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH----------------HHHHHH
T ss_pred             HHHHHHHHHHH----HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH----------------HHHHHH
Confidence            34455555554    235677777777777776     77777777777777764421                223578


Q ss_pred             HHHHHcC---CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773          180 IRVSHFN---RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA  232 (233)
Q Consensus       180 ~al~~lG---ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~  232 (233)
                      .++...|   ++++|++.|+++++.  ++++.+..++.++..    .+++++|...|.++
T Consensus       336 ~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A  393 (490)
T 2xm6_A          336 AIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA  393 (490)
T ss_dssp             HHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            8888766   788888888888887  567777778777777    78888888887654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.41  E-value=1.4e-06  Score=79.86  Aligned_cols=103  Identities=4%  Similarity=-0.036  Sum_probs=65.1

Q ss_pred             CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------------------------hh
Q 026773          121 SREAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------------------------SI  171 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lG---dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------------------------~~  171 (233)
                      ..++.+++++|.++...|   ++++|+..|++|.+.+|..+     ..++..                          .-
T Consensus       173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a-----~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~  247 (452)
T 3e4b_A          173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA-----QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGY  247 (452)
T ss_dssp             TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGS
T ss_pred             cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCC
Confidence            344459999999999999   99999999999999999876     321220                          01


Q ss_pred             hhhhhhhHHH-H--HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHh
Q 026773          172 VGIILKKLIR-V--SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-----GVDEARNRFLE  231 (233)
Q Consensus       172 ~~a~~~rG~a-l--~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg-----~~dEA~~~~l~  231 (233)
                      ..+++++|.+ +  ...+++++|++.|+++++.  +++++..+++.++. .|     ++++|...|.+
T Consensus       248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~  312 (452)
T 3e4b_A          248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK  312 (452)
T ss_dssp             THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence            3344555555 2  3456666666666666543  24555555555544 33     56666665554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.35  E-value=3.1e-06  Score=77.59  Aligned_cols=92  Identities=14%  Similarity=-0.001  Sum_probs=70.0

Q ss_pred             CCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC-----CcHHHH
Q 026773          121 SREAVVAIRRGML-L--FRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN-----RFEEGA  192 (233)
Q Consensus       121 P~~a~Ay~~RG~a-~--~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG-----ryeeAi  192 (233)
                      |+++.+++++|.+ +  ...||+++|+..|++|++.+  ++              .+++++|.++. .|     ++++|+
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~--------------~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QP--------------RAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CH--------------HHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CH--------------HHHHHHHHHHH-cCCCCCCCHHHHH
Confidence            6777777777776 3  35677777777777777554  33              23446999988 66     999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773          193 EQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA  232 (233)
Q Consensus       193 ~~f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~  232 (233)
                      ++|+++.   |+++++..+++.++..    ..++++|...|.++
T Consensus       308 ~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  348 (452)
T 3e4b_A          308 AHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA  348 (452)
T ss_dssp             HHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            9999998   8999998888877765    33999999998764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.30  E-value=3.8e-06  Score=73.32  Aligned_cols=130  Identities=8%  Similarity=0.026  Sum_probs=98.4

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREA-----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI  159 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a-----------------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~  159 (233)
                      .+.+.+-..+|...|..++  +.+|+..                 .++.++|.++..+|++++|++.+.+++++.+....
T Consensus        13 ~l~~~~~y~eA~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLL--DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHH--HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHHHHH--hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            3444555677889999988  6566543                 46899999999999999999999999998776541


Q ss_pred             Cccchhh----hh--------------------h------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc--
Q 026773          160 SGKGAYR----FT--------------------I------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ--  201 (233)
Q Consensus       160 ~~~~~y~----~~--------------------~------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l--  201 (233)
                          ...    ..                    .            ....++.++|.++...|+|++|++.+.+++..  
T Consensus        91 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           91 ----SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             ----HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             ----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence                110    00                    0            11457788999999999999999999998876  


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 ----NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 ----nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                          +|...+.+...+.+...+|++++|+..+.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  201 (434)
T 4b4t_Q          167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA  201 (434)
T ss_dssp             TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence                3334556666777888999999999988764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.21  E-value=2.7e-06  Score=79.72  Aligned_cols=94  Identities=10%  Similarity=-0.023  Sum_probs=75.0

Q ss_pred             cchHHHHHHHHhcc---cCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCCCCccchhhhhhhhh
Q 026773          104 IPSVSGIWDALTGG---NNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-----DPRQKISGKGAYRFTISIV  172 (233)
Q Consensus       104 ~~~a~~i~~~~i~~---~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-----dP~~~~~~~~~y~~~~~~~  172 (233)
                      ..+|+.++.+++..   .+.|++   +.++.++|.++..+|+|++|+..+++|+++     .|+++           .++
T Consensus       314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-----------~~a  382 (433)
T 3qww_A          314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-----------NVA  382 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-----------HHH
T ss_pred             HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-----------HHH
Confidence            35677777776531   245555   577899999999999999999999999987     46655           134


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCCHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPNDTEE  208 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d~e~  208 (233)
                      ..++|+|.+|..+|+|++|++.|++|+++     .|++|..
T Consensus       383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            46789999999999999999999999986     6777754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.14  E-value=5.7e-06  Score=77.46  Aligned_cols=86  Identities=5%  Similarity=-0.106  Sum_probs=71.5

Q ss_pred             HcCCHHHHHHHHHHHHhh-----CCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCC
Q 026773          136 RQGDVVGSVAEFDKAIEL-----DPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPND  205 (233)
Q Consensus       136 ~lGdyeeAIadfdkAIeL-----dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d  205 (233)
                      ..|+|++|+..+++++++     .|+++           .++.+++++|.+|..+|+|++|++.+++++++     .|++
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-----------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  378 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNV-----------YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS  378 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhch-----------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999996     45554           23557889999999999999999999999976     6777


Q ss_pred             HHH---HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          206 TEE---SIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       206 ~e~---~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |+.   +.+++..+..+|+++||...+.++
T Consensus       379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          379 LNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            765   345667788999999999998775

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.13  E-value=1e-05  Score=76.86  Aligned_cols=96  Identities=11%  Similarity=0.003  Sum_probs=74.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCC
Q 026773          131 GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPND  205 (233)
Q Consensus       131 G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d  205 (233)
                      ...+..+|+|++|+..+++++++.-+.--    ..  ++.++.+++++|.+|..+|+|++|+..+++++++     .|++
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg----~~--Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFA----DT--NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBC----TT--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcC----CC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            33456799999999999999998533220    00  0124567889999999999999999999999976     6777


Q ss_pred             HHH---HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          206 TEE---SIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       206 ~e~---~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |+.   +.+++..+..+|+++||...+.++
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            764   345667788999999999988765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.12  E-value=6.8e-06  Score=76.49  Aligned_cols=103  Identities=9%  Similarity=-0.064  Sum_probs=81.1

Q ss_pred             hhHHHhccCcchHHHHHHHHhcc---cCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccc
Q 026773           95 APTFTRRLFIPSVSGIWDALTGG---NNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKG  163 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~---~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~  163 (233)
                      +..+.+.+-+.+|+..+.+++..   .+-|++   +.++.++|.++..+|+|++|+..+++++++-     |+++     
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-----  368 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP-----  368 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-----
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-----
Confidence            34455555667788888887632   245555   5789999999999999999999999999874     5555     


Q ss_pred             hhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCCHHH
Q 026773          164 AYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPNDTEE  208 (233)
Q Consensus       164 ~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d~e~  208 (233)
                            ..+..++++|.+|..+|++++|++.|++|+++     .|++|..
T Consensus       369 ------~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~  412 (429)
T 3qwp_A          369 ------VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI  412 (429)
T ss_dssp             ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             ------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence                  12346789999999999999999999999986     6888764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.11  E-value=1.1e-05  Score=59.89  Aligned_cols=57  Identities=9%  Similarity=0.015  Sum_probs=52.5

Q ss_pred             hhhHHHHHHcCC---cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNR---FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGr---yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ..+|.+++..++   .++|.+.+++++++||+++.+.+.++....+.|++++|+..+.++
T Consensus        10 ~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A           10 AAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             HHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            359999988877   799999999999999999999999999999999999999998764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.11  E-value=9.7e-06  Score=86.67  Aligned_cols=119  Identities=12%  Similarity=0.061  Sum_probs=87.4

Q ss_pred             ccccccccchhHHHhccCcchH-------HHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773           86 PRGHYLQNRAPTFTRRLFIPSV-------SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus        86 ~~~h~~~~~~~~~~r~~~~~~a-------~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      ...+.+++|..-+.+.+....|       .+-|++++......+++.+|+++|.++...|++++||+.|.||     +++
T Consensus      1060 i~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~ 1134 (1630)
T 1xi4_A         1060 ISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP 1134 (1630)
T ss_pred             HhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh
Confidence            5556667777777777755554       2335555533345789999999999999999999999999997     555


Q ss_pred             CCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 026773          159 ISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE  224 (233)
Q Consensus       159 ~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dE  224 (233)
                           ..+         .+.|.++..+|+|++|++.|.+|.+.+++. ..-.+.+.|+++++++++
T Consensus      1135 -----say---------~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A         1135 -----SSY---------MEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAE 1185 (1630)
T ss_pred             -----HHH---------HHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHH
Confidence                 232         359999999999999999999999888542 122346666666666664

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.97  E-value=6.8e-05  Score=57.95  Aligned_cols=79  Identities=9%  Similarity=-0.009  Sum_probs=66.8

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~----lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      +.|...|.++.  +  ..++.+++++|.++..    .+|+++|+..|++|.+..  ++     ..         +.++|.
T Consensus        42 ~~A~~~~~~Aa--~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~-----~a---------~~~Lg~  101 (138)
T 1klx_A           42 QKLFQYLSKAC--E--LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQ-----DG---------CLILGY  101 (138)
T ss_dssp             HHHHHHHHHHH--H--TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH-----HH---------HHHHHH
T ss_pred             HHHHHHHHHHH--c--CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CH-----HH---------HHHHHH
Confidence            34777888877  3  3899999999999999    899999999999999983  34     23         335999


Q ss_pred             HHHH----cCCcHHHHHHHHHHHHcCC
Q 026773          181 RVSH----FNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       181 al~~----lGryeeAi~~f~kAL~lnP  203 (233)
                      ++..    .+++++|++.|++|.+...
T Consensus       102 ~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A          102 KQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            9999    9999999999999999854

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.95  E-value=3.7e-05  Score=69.76  Aligned_cols=173  Identities=12%  Similarity=0.076  Sum_probs=110.7

Q ss_pred             hHHhHhhHhH---hhhhhhhhhhhhHhhhhhccCCCCCc--hhhhHHhhhhccCCcchhhccccccccccccccccchhH
Q 026773           23 KILHLHQLYY---YKFCIFFQFTSMALTQHVLKPTINPP--LYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPT   97 (233)
Q Consensus        23 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~   97 (233)
                      ...++|+-||   |.-||= ...+       ++| .|+-  ++-..||.+-=..+-+ ....+|+..+.      .....
T Consensus        16 ~lf~ikn~fy~G~yq~~i~-e~~~-------~~~-~~~~~~~~~~~Rs~iAlg~~~~-~~~~~~~~~a~------~~la~   79 (310)
T 3mv2_B           16 DYFNIKQNYYTGNFVQCLQ-EIEK-------FSK-VTDNTLLFYKAKTLLALGQYQS-QDPTSKLGKVL------DLYVQ   79 (310)
T ss_dssp             CTHHHHHHHTTTCHHHHTH-HHHT-------SSC-CCCHHHHHHHHHHHHHTTCCCC-CCSSSTTHHHH------HHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHH-HHHh-------cCc-cchHHHHHHHHHHHHHcCCCcc-CCCCCHHHHHH------HHHHH
Confidence            4568888888   777774 3221       334 2332  2334687763222222 22344432111      11122


Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCCCCccchhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP--RQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP--~~~~~~~~~y~~~~~~~~a~  175 (233)
                      +.+    .++...+++.+  +..+.+..++...|.++...|++++|++.+.+.|..+|  ++.              +++
T Consensus        80 ~~~----~~a~~~l~~l~--~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l--------------ea~  139 (310)
T 3mv2_B           80 FLD----TKNIEELENLL--KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT--------------ELL  139 (310)
T ss_dssp             HHT----TTCCHHHHHTT--TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH--------------HHH
T ss_pred             Hhc----ccHHHHHHHHH--hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH--------------HHH
Confidence            222    22666777776  45567788889999999999999999999999999998  333              233


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCC-----CHHHHHHHH--HHHHHcC--CHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPN-----DTEESIWCF--LCEAQLY--GVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~-----d~e~~~~~~--l~~a~Lg--~~dEA~~~~l~~  232 (233)
                      ...+.++..+||.+.|.+.+++..+.+|+     +. ..+...  .+....|  ++++|...|.+.
T Consensus       140 ~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~-~l~~Laea~v~l~~g~~~~q~A~~~f~El  204 (310)
T 3mv2_B          140 LLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE-MILNLAESYIKFATNKETATSNFYYYEEL  204 (310)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH-HHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            45899999999999999999999999993     33 223332  2244445  788888887763

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.93  E-value=3.3e-05  Score=71.87  Aligned_cols=89  Identities=8%  Similarity=-0.143  Sum_probs=73.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----C
Q 026773          133 LLFRQGDVVGSVAEFDKAIELD-----PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----N  202 (233)
Q Consensus       133 a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----n  202 (233)
                      -+..+|+|++|++.+++++++.     |+++           ..+.+++++|.+|..+|+|++|++.+++++++     .
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~-----------~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg  364 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINI-----------YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP  364 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccch-----------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence            3457899999999999999874     4443           23567889999999999999999999999976     5


Q ss_pred             CCCHHH---HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          203 PNDTEE---SIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       203 P~d~e~---~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |++|+.   +.+++..+..+|+++||...+.++
T Consensus       365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            777765   345667788999999999988765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.82  E-value=0.00011  Score=64.02  Aligned_cols=120  Identities=9%  Similarity=0.040  Sum_probs=86.2

Q ss_pred             chHHHHHHHHhc----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          105 PSVSGIWDALTG----GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       105 ~~a~~i~~~~i~----~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      ..+..++..++.    ....+.-+.++.++|.++..+|+|++|+..+++++..-.....   +.     ..+.++++.|.
T Consensus       112 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---~~-----~~~~~~~~~~~  183 (434)
T 4b4t_Q          112 DDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD---KP-----SLVDVHLLESK  183 (434)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC---ST-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc---ch-----hHHHHHHHHHH
Confidence            344555555441    1344556889999999999999999999999999987554331   01     13457788999


Q ss_pred             HHHHcCCcHHHHHHHHHHHHcCCC---CHH--HHHH--HHHHHHHcCCHHHHHHHHHhh
Q 026773          181 RVSHFNRFEEGAEQFRIDVAQNPN---DTE--ESIW--CFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       181 al~~lGryeeAi~~f~kAL~lnP~---d~e--~~~~--~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++..+|++++|...+++++.+.+.   ++.  ..++  .+......+++++|...|.++
T Consensus       184 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          184 VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999999999999987543   222  2222  234445779999998887653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.79  E-value=0.00017  Score=65.40  Aligned_cols=118  Identities=8%  Similarity=-0.084  Sum_probs=90.4

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CCCCccchhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-----QKISGKGAYRFT  168 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P--~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~-----~~~~~~~~y~~~  168 (233)
                      ..+...+-..+|...+.+.+  ..+|  ++.+++...+.++..+|+.+.|.+.+++..+.+|+     +.      ...+
T Consensus       108 ~i~~~~g~~eeAL~~l~~~i--~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~------~l~~  179 (310)
T 3mv2_B          108 TAQAILGDLDKSLETCVEGI--DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE------MILN  179 (310)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH--TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH------HHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHh--ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH------HHHH
Confidence            33444556677888888887  6665  89999999999999999999999999999999993     33      1111


Q ss_pred             hhhhhhhhhhHHHHHHcC--CcHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 026773          169 ISIVGIILKKLIRVSHFN--RFEEGAEQFRIDVAQNPNDTE-ESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       169 ~~~~~a~~~rG~al~~lG--ryeeAi~~f~kAL~lnP~d~e-~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                             +--|++....|  ++++|...|+++.+..|+... ..++.  |..++|+++||...+.
T Consensus       180 -------Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln--~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          180 -------LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN--LHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             -------HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--HHHHHTCHHHHHHHHH
T ss_pred             -------HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--HHHHcCCHHHHHHHHH
Confidence                   22355566667  999999999999887775211 22333  8889999999999874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.73  E-value=0.00024  Score=76.13  Aligned_cols=105  Identities=9%  Similarity=-0.118  Sum_probs=79.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchh--hhh-----------hhhhhhhhhhHHHHHHcC
Q 026773          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAY--RFT-----------ISIVGIILKKLIRVSHFN  186 (233)
Q Consensus       120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y--~~~-----------~~~~~a~~~rG~al~~lG  186 (233)
                      ..+++.+|...|.++...|+|++|++.+..|++.+|+...-..-.+  .-.           ..-...+.+.|..++..|
T Consensus      1130 KAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A         1130 KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred             hcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            4699999999999999999999999999999999976410000000  000           011345667999999999


Q ss_pred             CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++|+..|.++        ..|.-.+.|+.++|++++|.+.+.++
T Consensus      1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             CHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            999999999986        24556678888999999999988765

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.71  E-value=0.00012  Score=58.71  Aligned_cols=97  Identities=9%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-CCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVG---SVAEFDKAIELD-PRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyee---AIadfdkAIeLd-P~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      ...+.-|....  +.++.+.++-++.++++....+..+   +|..++..++-+ |...    ..+.+.         +|+
T Consensus        18 ~~~~~~y~~e~--~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~----Rd~lY~---------LAv   82 (126)
T 1nzn_A           18 LKFEKKFQSEK--AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ----RDYVFY---------LAV   82 (126)
T ss_dssp             HHHHHHHHHHH--HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH----HHHHHH---------HHH
T ss_pred             HHHHHHHHHHh--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH----HHHHHH---------HHH
Confidence            34455666665  5678999999999999999988877   999999999987 5222    134444         999


Q ss_pred             HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773          181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  216 (233)
Q Consensus       181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~  216 (233)
                      .++++|+|++|...++..|+++|+|.++......+.
T Consensus        83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999998766655443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.65  E-value=0.00012  Score=69.78  Aligned_cols=114  Identities=10%  Similarity=-0.018  Sum_probs=77.9

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ...+...+.+.+|..+|+.+          ..|..+|.++.++|+|++|++.|.+|.  +|         ..|. .++++
T Consensus       129 Gd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~---------~~Wk-~v~~a  186 (449)
T 1b89_A          129 GDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN--ST---------RTWK-EVCFA  186 (449)
T ss_dssp             --------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH---------HHHH-HHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc---------hhHH-HHHHH
Confidence            34566666777788788755          478899999999999999999999992  33         3343 23344


Q ss_pred             hhhhH-----------------------HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 026773          175 ILKKL-----------------------IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ--LYGVDEARNRF  229 (233)
Q Consensus       175 ~~~rG-----------------------~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~--Lg~~dEA~~~~  229 (233)
                      +...|                       ..|...|+++||++.+++++.+++.+...+.-++.++++  -++..|+...|
T Consensus       187 Cv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          187 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             HHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            44444                       678888999999999999999998887776666666663  45556666555


Q ss_pred             H
Q 026773          230 L  230 (233)
Q Consensus       230 l  230 (233)
                      .
T Consensus       267 ~  267 (449)
T 1b89_A          267 W  267 (449)
T ss_dssp             S
T ss_pred             H
Confidence            3

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.55  E-value=0.00023  Score=70.30  Aligned_cols=111  Identities=7%  Similarity=0.052  Sum_probs=89.0

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSV-AEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF  185 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAI-adfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l  185 (233)
                      +..+|.+++  ...|.+++.|+..+..+...|+.++|+ +.|++|+...|.+.      ..|.        ..+...-..
T Consensus       328 v~~~Ye~aL--~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~------~Lwl--------~~a~~ee~~  391 (679)
T 4e6h_A          328 MTYVYMQAA--QHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA------VLAF--------SLSEQYELN  391 (679)
T ss_dssp             HHHHHHHHH--HHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH------HHHH--------HHHHHHHHT
T ss_pred             HHHHHHHHH--HHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH------HHHH--------HHHHHHHHh
Confidence            345688887  789999999999999999999999998 99999999999876      4443        477778889


Q ss_pred             CCcHHHHHHHHHHHHc-----------CCCC---------HHHHHHHHHH--HHHcCCHHHHHHHHHhhC
Q 026773          186 NRFEEGAEQFRIDVAQ-----------NPND---------TEESIWCFLC--EAQLYGVDEARNRFLEAR  233 (233)
Q Consensus       186 GryeeAi~~f~kAL~l-----------nP~d---------~e~~~~~~l~--~a~Lg~~dEA~~~~l~~~  233 (233)
                      |++++|.+.|++++..           .|.+         ....+|...+  +.+.|+.++|+..|..+|
T Consensus       392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999985           2532         1223566544  346789999999998763

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.54  E-value=0.00013  Score=69.50  Aligned_cols=79  Identities=8%  Similarity=-0.032  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      .+..+|...|..++..|+|++|+..|+++       .      .+.         .+|.++.++|+|++|++.|+++   
T Consensus       120 pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~------n~~---------~LA~~L~~Lg~yq~AVea~~KA---  174 (449)
T 1b89_A          120 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------S------NFG---------RLASTLVHLGEYQAAVDGARKA---  174 (449)
T ss_dssp             C----------------CTTTHHHHHHHT-------T------CHH---------HHHHHHHTTTCHHHHHHHHHHH---
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------h------hHH---------HHHHHHHHhccHHHHHHHHHHc---
Confidence            34469999999999999999999999987       2      223         4999999999999999999999   


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773          202 NPNDTEESIWCFLCEAQLYGVDEARN  227 (233)
Q Consensus       202 nP~d~e~~~~~~l~~a~Lg~~dEA~~  227 (233)
                        ++++.|-....+....|+++.|..
T Consensus       175 --~~~~~Wk~v~~aCv~~~ef~lA~~  198 (449)
T 1b89_A          175 --NSTRTWKEVCFACVDGKEFRLAQM  198 (449)
T ss_dssp             --TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --CCchhHHHHHHHHHHcCcHHHHHH
Confidence              345433222233335555555543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.52  E-value=0.00032  Score=51.80  Aligned_cols=59  Identities=7%  Similarity=-0.210  Sum_probs=49.5

Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQN-------PNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~ln-------P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      -++.+|..++..|+|+.|+.+|++|++..       +..++.+..++.|+.++|++++|...+.++
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34569999999999999999999999974       234566677788899999999999988764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.35  E-value=0.00045  Score=56.91  Aligned_cols=79  Identities=9%  Similarity=0.073  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC---CcHHHHHHHHHHHHcC-C-CCHHHHHHHH
Q 026773          139 DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN---RFEEGAEQFRIDVAQN-P-NDTEESIWCF  213 (233)
Q Consensus       139 dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG---ryeeAi~~f~kAL~ln-P-~d~e~~~~~~  213 (233)
                      +...+.+.|+++++.+|.+.     ...+         +.|+++.+.+   +.++|+..++..++.+ | ++.+..++++
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~-----~~~F---------~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSK-----STQF---------EYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   78 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCH-----HHHH---------HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcH-----HHHH---------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence            35677888999999888655     3333         4899999999   7779999999999999 7 5688889999


Q ss_pred             HHHHHcCCHHHHHHHHHh
Q 026773          214 LCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       214 l~~a~Lg~~dEA~~~~l~  231 (233)
                      .+..++|++++|+.++..
T Consensus        79 v~~~kl~~Y~~A~~y~~~   96 (152)
T 1pc2_A           79 VGNYRLKEYEKALKYVRG   96 (152)
T ss_dssp             HHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHH
Confidence            999999999999998865

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.07  E-value=0.0077  Score=54.95  Aligned_cols=109  Identities=9%  Similarity=-0.035  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------hhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------SIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      +.....|......|+.++|++.+++|+++=-..+..|-....|..        ....+...+..++...|++++|+...+
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344556666677899999999999999996544331111122321        225666778888999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773          197 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR  233 (233)
Q Consensus       197 kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~  233 (233)
                      +++..+|-+-..+..+-.++...|+..+|...|...|
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999988877777788899999999999998754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.05  E-value=0.011  Score=48.49  Aligned_cols=85  Identities=8%  Similarity=0.030  Sum_probs=71.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773          120 NSREAVVAIRRGMLLFRQGDV---VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR  196 (233)
Q Consensus       120 ~P~~a~Ay~~RG~a~~~lGdy---eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~  196 (233)
                      ++-++++-++.++++....+.   .++|..++..++-+|...    ..+.+.         +++.++++|+|++|.+..+
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~----RdcLYy---------LAvg~ykl~~Y~~Ar~y~d  101 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR----RECLYY---------LTIGCYKLGEYSMAKRYVD  101 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH----HHHHHH---------HHHHHHTTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch----hHHHHH---------HHHHHHHhhhHHHHHHHHH
Confidence            467899999999999998755   479999999999888654    245555         9999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHH
Q 026773          197 IDVAQNPNDTEESIWCFLCEA  217 (233)
Q Consensus       197 kAL~lnP~d~e~~~~~~l~~a  217 (233)
                      ..|+++|+|.++.....++..
T Consensus       102 ~lL~~eP~n~QA~~Lk~~Ie~  122 (144)
T 1y8m_A          102 TLFEHERNNKQVGALKSMVED  122 (144)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHH
Confidence            999999999987666554443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.91  E-value=0.0059  Score=51.18  Aligned_cols=103  Identities=9%  Similarity=-0.008  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC-
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN-  202 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln-  202 (233)
                      -.+++.-...++..|.|+-|+-..+.++.+..+++     ...-....+.++...|.+++..|+|..|...|++||.+. 
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-----~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k   94 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-----ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK   94 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-----TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-----ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            45566667778899999999999999888865444     110001123455668999999999999999999986642 


Q ss_pred             -----C-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          203 -----P-------------------NDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       203 -----P-------------------~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                           |                   .+.|..+..+.|+.++++.++|+..++.
T Consensus        95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                 1                   1225667888999999999999998875

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.89  E-value=0.0064  Score=49.32  Aligned_cols=83  Identities=8%  Similarity=0.028  Sum_probs=68.7

Q ss_pred             CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          122 REAVVAIRRGMLLFRQGDV---VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdy---eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      -++.+-++.++++....+.   .++|..++..++-+|...    ..+.|.         +++.++++|+|++|.+..+..
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~----Rd~LYy---------LAvg~yklgdY~~Ar~y~d~l  104 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR----RECLYY---------LTIGCYKLGEYSMAKRYVDTL  104 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHH---------HHHHHHHHTCHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh----HHHHHH---------HHHHHHHhhhHHHHHHHHHHH
Confidence            4788999999999988755   579999999999998543    145555         999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHH
Q 026773          199 VAQNPNDTEESIWCFLCEA  217 (233)
Q Consensus       199 L~lnP~d~e~~~~~~l~~a  217 (233)
                      ++++|+|.++......+.-
T Consensus       105 L~~eP~N~QA~~Lk~~Ie~  123 (134)
T 3o48_A          105 FEHERNNKQVGALKSMVED  123 (134)
T ss_dssp             HTTCTTCHHHHHHHHHHHH
T ss_pred             HhhCCCCHHHHHHHHHHHH
Confidence            9999999987666555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.83  E-value=0.0086  Score=50.00  Aligned_cols=105  Identities=12%  Similarity=0.052  Sum_probs=80.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDV------VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGA  192 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdy------eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi  192 (233)
                      +.|+|++.|...-...-..|+.      ++-++.|++|++.-|-..     .-.|. +-+.++.+-+.- ..+++.++|.
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-----~~~wr-rYI~LWIrYA~~-~ei~D~d~aR   80 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-----YGQNE-SFARIQVRFAEL-KAIQEPDDAR   80 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-----GTTCH-HHHHHHHHHHHH-HHHHCGGGCH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-----cccHH-HHHHHHHHHHHH-HHhcCHHHHH
Confidence            6899999999998888888999      999999999999888433     22343 334455555544 6779999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHhh
Q 026773          193 EQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLEA  232 (233)
Q Consensus       193 ~~f~kAL~lnP~d~e~~~~~~l~--~a~Lg~~dEA~~~~l~~  232 (233)
                      +.|+.++.+....+  -+|...+  +.++|+.+.|+..+.++
T Consensus        81 ~vy~~a~~~hKkFA--Kiwi~~AqFEiRqgnl~kARkILg~A  120 (161)
T 4h7y_A           81 DYFQMARANCKKFA--FVHISFAQFELSQGNVKKSKQLLQKA  120 (161)
T ss_dssp             HHHHHHHHHCTTBH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHH--HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            99999999977774  4565545  56899999999887653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.80  E-value=0.0066  Score=59.89  Aligned_cols=97  Identities=12%  Similarity=0.010  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC-cHHHHHHHHHHHHc
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR-FEEGAEQFRIDVAQ  201 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr-yeeAi~~f~kAL~l  201 (233)
                      .+.+|........+.|+.++|.+.|++|++..|...     .-        +|...+..-...|+ ++.|.+.|+++++.
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~--------lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~  499 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PD--------IYLENAYIEYHISKDTKTACKVLELGLKY  499 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----TH--------HHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hH--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            456888888888899999999999999999834322     12        22345666666655 99999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .|+++..+.-..--+...|+.+.|+..|+.+
T Consensus       500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lfera  530 (679)
T 4e6h_A          500 FATDGEYINKYLDFLIYVNEESQVKSLFESS  530 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999875433333355789999999999865

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.71  E-value=0.019  Score=53.77  Aligned_cols=49  Identities=12%  Similarity=0.050  Sum_probs=44.9

Q ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      +..+|.+++  ...|.++..|...+..+...|+.++|...|++|++. |++.
T Consensus       198 v~~~ye~al--~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~  246 (493)
T 2uy1_A          198 MHFIHNYIL--DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM  246 (493)
T ss_dssp             HHHHHHHHH--HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred             HHHHHHHHH--HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence            556888887  778999999999999999999999999999999999 9876

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.31  E-value=0.055  Score=50.91  Aligned_cols=111  Identities=10%  Similarity=0.041  Sum_probs=83.1

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL--dP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      ..|..++++.....+.| |..+|..+=.++.+.|++++|++.|++..+.  .|+..       .|+        ..=.++
T Consensus        87 ~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-------tyn--------~lI~~~  150 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR-------SYG--------PALFGF  150 (501)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-------HHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-------eeh--------HHHHHH
Confidence            45677888766333455 5678888888999999999999999998875  46433       222        355677


Q ss_pred             HHcCCcHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          183 SHFNRFEEGAEQFRIDVAQ--NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~l--nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ...|+.++|.+.|++..+.  .|+ ...+...-.++++.|+.++|...+.+-
T Consensus       151 ~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          151 CRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            8899999999999998874  454 333444456778999999999998764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.76  E-value=0.043  Score=45.94  Aligned_cols=105  Identities=10%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             cchhHHHhccCcchHHHHHHHHhccc-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCC--
Q 026773           93 NRAPTFTRRLFIPSVSGIWDALTGGN-NNSR------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP---RQKIS--  160 (233)
Q Consensus        93 ~~~~~~~r~~~~~~a~~i~~~~i~~~-l~P~------~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP---~~~~~--  160 (233)
                      +-+..+-..+....|+-+.+.++... .+|+      .+.+++.+|.+++..|+|.+|...|++||.+.-   +++..  
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            33445555566677887888776332 3333      246889999999999999999999999987742   22200  


Q ss_pred             --ccc-hh---hhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          161 --GKG-AY---RFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       161 --~~~-~y---~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                        |-. .+   .+..+=++.-+..+.++..+|++++|+...+.
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence              000 00   00000024445689999999999999998764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.59  E-value=0.66  Score=43.50  Aligned_cols=122  Identities=9%  Similarity=-0.065  Sum_probs=85.6

Q ss_pred             cchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhh--CCCCCCCc
Q 026773           93 NRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG---------DVVGSVAEFDKAIEL--DPRQKISG  161 (233)
Q Consensus        93 ~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG---------dyeeAIadfdkAIeL--dP~~~~~~  161 (233)
                      ..+..+.|.+-..+|..+|++.....+.| |..+|..+=.++...|         +.++|.+.|++..+.  .|+..   
T Consensus        31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~---  106 (501)
T 4g26_A           31 QKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA---  106 (501)
T ss_dssp             HHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH---
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH---
Confidence            34566778888888999999886333555 4556655544444433         478899999988765  35432   


Q ss_pred             cchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          162 KGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ--NPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       162 ~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l--nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                          .|+        .+-.++...|+.++|++.|++..+.  .|+ ...+.-.-.++++.|+.++|...|.+
T Consensus       107 ----tyn--------~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A          107 ----TFT--------NGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             ----HHH--------HHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----HHH--------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHH
Confidence                222        4666788899999999999998874  454 43444445677899999999998875

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.02  E-value=0.14  Score=40.79  Aligned_cols=79  Identities=8%  Similarity=0.045  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHH---HHHHHHHHHHcC-C-CCHHHHHHHH
Q 026773          139 DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEE---GAEQFRIDVAQN-P-NDTEESIWCF  213 (233)
Q Consensus       139 dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryee---Ai~~f~kAL~ln-P-~d~e~~~~~~  213 (233)
                      +...+.+.|+++++.++...     ..-         ++.++++.+..+..+   +|..++..++-+ | +..+..++++
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~-----~~~---------F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LA   81 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSK-----STQ---------FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCH-----HHH---------HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcH-----HHH---------HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            45567778888888777444     233         348999999988888   999999999987 5 4567778899


Q ss_pred             HHHHHcCCHHHHHHHHHh
Q 026773          214 LCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       214 l~~a~Lg~~dEA~~~~l~  231 (233)
                      .+..++|++++|+.++..
T Consensus        82 vg~yklg~Y~~A~~~~~~   99 (126)
T 1nzn_A           82 VGNYRLKEYEKALKYVRG   99 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHH
Confidence            999999999999988753

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.89  E-value=0.04  Score=44.64  Aligned_cols=73  Identities=11%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             chhhccccccccccccccccchhHHHhccCcchHHHHHHHHhcccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026773           74 SVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIE  152 (233)
Q Consensus        74 ~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe  152 (233)
                      |.++.-|-....++..+-.+-          .....+...+.  +.+| +.-+-++.++..++++|+|++|....++.++
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~----------~~GI~LLe~l~--~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDE----------RLGVKILTDIY--KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHH----------HHHHHHHHHHH--HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHHHHcCCCHHHH----------HHHHHHHHHHH--hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            555555555555554432222          23445555555  4557 4578899999999999999999999999999


Q ss_pred             hCCCCC
Q 026773          153 LDPRQK  158 (233)
Q Consensus       153 LdP~~~  158 (233)
                      ++|++.
T Consensus       107 ~eP~N~  112 (134)
T 3o48_A          107 HERNNK  112 (134)
T ss_dssp             TCTTCH
T ss_pred             hCCCCH
Confidence            999887

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.73  E-value=0.49  Score=44.12  Aligned_cols=93  Identities=12%  Similarity=0.003  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC-CcHHHHHHHHHHHHcCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN-RFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG-ryeeAi~~f~kAL~lnP  203 (233)
                      .+|........+.|+.++|.+.|++|  ..|...     .-.|        ...+..-+..+ +.+.|.+.|+++++.-|
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~~-----~~v~--------i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL--GNEGVG-----PHVF--------IYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCCC-----HHHH--------HHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCCC-----hHHH--------HHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence            34555554455678899999999999  345422     1222        23455555555 69999999999999889


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 NDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++++.+.-..--+..+|+.+.|+..|..+
T Consensus       352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          352 DSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88864322222245788889998877653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.25  E-value=0.5  Score=45.11  Aligned_cols=77  Identities=10%  Similarity=-0.081  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      .+..+|.+..+...++.|...|.+|+.++|+++     ..+.+         +|++....|+.-+|+-.|-+++......
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G-----~~~nq---------Lavla~~~~~~l~a~y~y~rsl~~~~Pf  219 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG-----QPYNQ---------LAILASSKGDHLTTIFYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS-----HHHHH---------HHHHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC-----chHHH---------HHHHHhcccccHHHHHHHHHHHhcCCCC
Confidence            557899999999999999999999999999998     44444         9999999999999999999999877767


Q ss_pred             HHHHHHHHHHH
Q 026773          206 TEESIWCFLCE  216 (233)
Q Consensus       206 ~e~~~~~~l~~  216 (233)
                      +.+.-+....+
T Consensus       220 ~~a~~nL~~~f  230 (497)
T 1ya0_A          220 PAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            66655554333

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.98  E-value=1.2  Score=44.90  Aligned_cols=119  Identities=9%  Similarity=0.071  Sum_probs=77.4

Q ss_pred             cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHH--c-CCHHHHHHHHHHHHh--------hCCCCCCCccchhhhhhhhh
Q 026773          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR--Q-GDVVGSVAEFDKAIE--------LDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~--l-GdyeeAIadfdkAIe--------LdP~~~~~~~~~y~~~~~~~  172 (233)
                      .+.+..+...+.  +.+|.....+ .+..+...  . .+=-+|+....++++        +.+.+..    .....+...
T Consensus       265 ~~~a~~~le~L~--~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~----~~~~~~~~~  337 (754)
T 4gns_B          265 VDFTIDYLKGLT--KKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD----SARLMNCMS  337 (754)
T ss_dssp             HHHHHHHHHHHH--HHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHH--hhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc----cccccCcch
Confidence            344666777766  6677654433 33333221  2 244568888888874        3344330    111111112


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                      ....-...-+...|+|+-|++...+|+...|.+-+.|+.+..|+..+|+++.|+-.+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence            223334455556799999999999999999999999999999999999999998654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.80  E-value=0.46  Score=48.96  Aligned_cols=112  Identities=10%  Similarity=0.020  Sum_probs=73.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCCCccchh--------hhhhhhhhhhhhhHHHHHHcCCcH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPRQKISGKGAY--------RFTISIVGIILKKLIRVSHFNRFE  189 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-LdP~~~~~~~~~y--------~~~~~~~~a~~~rG~al~~lGrye  189 (233)
                      ..|.++..-+.+|.+++..|++++|...|.+|-. +.++........-        .+.......|+..-...-..|-++
T Consensus       837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~  916 (1139)
T 4fhn_B          837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI  916 (1139)
T ss_dssp             HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred             hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence            4578888889999999999999999999998732 1111110000000        000011223444566677789999


Q ss_pred             HHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHH
Q 026773          190 EGAEQFRIDVAQNPNDTE-----ESIWCFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       190 eAi~~f~kAL~lnP~d~e-----~~~~~~l~~a~Lg~~dEA~~~~l  230 (233)
                      .+++....||+..+.+.+     -|...+.+...+|++++|-..+.
T Consensus       917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            999999999987654332     12334567778999999987764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.71  E-value=0.31  Score=44.22  Aligned_cols=62  Identities=10%  Similarity=0.062  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      .+...+..++...|++++|+...+++++.+|-+-     ..+..         +=.+++..|+..+|++.|++.-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E-----~~~~~---------lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYRE-----PLWTQ---------LITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHH---------HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHH---------HHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445667778899999999999999999999776     34333         77889999999999999988544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=91.88  E-value=0.13  Score=42.00  Aligned_cols=50  Identities=12%  Similarity=0.074  Sum_probs=41.6

Q ss_pred             HHHHHHHHhcccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          107 VSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       107 a~~i~~~~i~~~l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      ...+...+.  ..+| +.-+-.+.++..++++|+|++|....+..++++|++.
T Consensus        61 GI~LLe~l~--~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           61 GVKILTDIY--KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             HHHHHHHHH--HHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             HHHHHHHHH--hcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            444555555  4556 5678889999999999999999999999999999886

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.82  E-value=0.26  Score=44.09  Aligned_cols=62  Identities=16%  Similarity=0.191  Sum_probs=53.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773          133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE  208 (233)
Q Consensus       133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~  208 (233)
                      .+++.|+.++|++.....|+-+|.++     ...+.         +-..+.-.|+++.|.+.++.+.+++|+....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da-----~~R~~---------LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDA-----SLRSS---------FIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCH-----HHHHH---------HHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCH-----HHHHH---------HHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            35678999999999999999999998     56665         7788889999999999999999999976543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.66  E-value=3.2  Score=38.41  Aligned_cols=97  Identities=11%  Similarity=0.005  Sum_probs=72.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC---CC
Q 026773          128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN---PN  204 (233)
Q Consensus       128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln---P~  204 (233)
                      ..+|..++..|+|.+|++.+.+..+--.+..    +..    .++++++....++..++++..+.+.+++|....   +.
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d----d~~----~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLD----DKN----LLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS----CTH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccc----cch----hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            4889999999999999999999887543322    011    246788889999999999999999999987654   23


Q ss_pred             CHHHH--H--HHHHHHH-HcCCHHHHHHHHHhh
Q 026773          205 DTEES--I--WCFLCEA-QLYGVDEARNRFLEA  232 (233)
Q Consensus       205 d~e~~--~--~~~l~~a-~Lg~~dEA~~~~l~~  232 (233)
                      +|...  +  ..|.... ..+++++|-..|.++
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence            34322  2  2345566 789999999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.60  E-value=1.5  Score=41.17  Aligned_cols=32  Identities=9%  Similarity=0.049  Sum_probs=27.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKA  150 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkA  150 (233)
                      ...++...|..+|......|+++.|+.+|.++
T Consensus       676 ~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          676 TDESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            45577888999999999999999999988876

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.65  E-value=2.2  Score=36.83  Aligned_cols=76  Identities=11%  Similarity=0.083  Sum_probs=61.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h--CCCCCC--------CccchhhhhhhhhhhhhhhHHHHHHcCCc
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--L--DPRQKI--------SGKGAYRFTISIVGIILKKLIRVSHFNRF  188 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe--L--dP~~~~--------~~~~~y~~~~~~~~a~~~rG~al~~lGry  188 (233)
                      -|-..+.+-...++..++||..|+...++.|+  .  ||+...        .||+.+++.        ..|..+-..|+-
T Consensus        59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~--------l~a~lltq~g~r  130 (242)
T 3kae_A           59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES--------LLGDLCTLSGYR  130 (242)
T ss_dssp             CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH--------HHHHHHHHTTCH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH--------HHHHHHHHhcCH
Confidence            45667778888999999999999999999993  3  343221        456667665        789999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 026773          189 EEGAEQFRIDVAQNPN  204 (233)
Q Consensus       189 eeAi~~f~kAL~lnP~  204 (233)
                      +||+..|.++...+|-
T Consensus       131 ~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A          131 EEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHHHHHHHHHCCC
T ss_pred             HHhhhHhhhhcCCccc
Confidence            9999999999988873

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.64  E-value=0.81  Score=42.04  Aligned_cols=100  Identities=13%  Similarity=0.060  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      .-..++..+|..+...||+++|++.|.++...-....           .++++++..-.+....+++..+....+++-.+
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-----------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-----------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-----------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            3456889999999999999999999999988765443           13456667778888899999999999998665


Q ss_pred             C--CCCHHHH----HHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 N--PNDTEES----IWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 n--P~d~e~~----~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      -  ..+++..    ...++.....+++.+|-..|.++
T Consensus       198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~  234 (429)
T 4b4t_R          198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDS  234 (429)
T ss_dssp             HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            2  2333332    12234445678999999888764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.34  E-value=3.8  Score=35.35  Aligned_cols=93  Identities=8%  Similarity=0.049  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      +-|+.++--..+|..++..|+|..|+-...   .+|.-       ...+.         ..+++..+.+|..|+.+.+..
T Consensus        28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lNT~-------Ts~YY---------k~LCy~klKdYkkA~~~le~i   88 (242)
T 3kae_A           28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLH---KLNTC-------TSKYY---------ESLCYKKKKDYKKAIKSLESI   88 (242)
T ss_dssp             HC----CTHHHHHHHHHHTTCHHHHHHHHH---TCCBH-------HHHHH---------HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HccCChHHHhhhhhhhhhcchHhHHHHHHH---hcchH-------HHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence            447777777889999999999999886643   33331       23333         799999999999999999998


Q ss_pred             H--H---------------cCCCCHHHHHH-HHHHHHHcCCHHHHHHHHH
Q 026773          199 V--A---------------QNPNDTEESIW-CFLCEAQLYGVDEARNRFL  230 (233)
Q Consensus       199 L--~---------------lnP~d~e~~~~-~~l~~a~Lg~~dEA~~~~l  230 (233)
                      +  +               +||.|-|.... .+....+.|+.+||+..+.
T Consensus        89 l~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~  138 (242)
T 3kae_A           89 LEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV  138 (242)
T ss_dssp             HTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence            8  2               24677775443 4566679999999998774

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.74  E-value=4.1  Score=36.38  Aligned_cols=57  Identities=14%  Similarity=0.075  Sum_probs=46.5

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      +.+-+..+.+.....+  +.+|.|+..-..+-..+...|+++.|..-.+.+.+++|...
T Consensus         9 ~~g~L~~al~~~~~~V--R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            9 SEGQLQQALELLIEAI--KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             TTTCHHHHHHHHHHHH--HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             hCCCHHHHHHHHHHHH--HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            3333344554555555  79999999999999999999999999999999999999765

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.32  E-value=0.29  Score=47.39  Aligned_cols=92  Identities=15%  Similarity=0.036  Sum_probs=66.3

Q ss_pred             CCCCchhhhHHhhhhccCCcchhhcccccccc-ccccccccchhHHHhccCcchHHHHHHHHhcccC---CCCCHHHHHH
Q 026773           54 TINPPLYSFHRSLLTSKAPLSVQTHINSLFST-PRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNN---NSREAVVAIR  129 (233)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l---~P~~a~Ay~~  129 (233)
                      .|=|+|.+.||+.....-+..+++.+|.+... +..+             ....|+.+-+++.--+.   |+.-+.-++.
T Consensus       209 ~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~-------------~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY  275 (523)
T 4b4t_S          209 ILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNG-------------EVDSASDFISKLEYPHTDVSSSLEARYFFY  275 (523)
T ss_dssp             HHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSS-------------CSTTHHHHHHHHCSCTTTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccC-------------cHHHHHHHHhcCcCCcccCCHHHHHHHHHH
Confidence            46688999999999999999999999987654 2222             22345555554431011   1112455677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          130 RGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       130 RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      .|.++..+++|.+|.+++..|++.-|...
T Consensus       276 ~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          276 LSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            89999999999999999999999998765

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.79  E-value=1.7  Score=42.47  Aligned_cols=78  Identities=9%  Similarity=-0.126  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773          140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL  219 (233)
Q Consensus       140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L  219 (233)
                      ..++...++++....+++.     ..-|.         .+.++ ..|++++|...|++.-.-....+...+|.+.+...+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~-----~~e~~---------~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~  332 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQSTS-----LIERR---------VRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLER  332 (618)
T ss_dssp             CHHHHHHHHHHHHTCCCHH-----HHHHH---------HHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHhccccCCChH-----HHHHH---------HHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHc
Confidence            5567777777655433322     23344         45555 458999998888765443334566778888888888


Q ss_pred             CCHHHHHHHHHhh
Q 026773          220 YGVDEARNRFLEA  232 (233)
Q Consensus       220 g~~dEA~~~~l~~  232 (233)
                      |+.++|...|.++
T Consensus       333 g~~~~a~~~~~~~  345 (618)
T 1qsa_A          333 GREAEAKEILHQL  345 (618)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999888877653

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=80.06  E-value=12  Score=39.52  Aligned_cols=91  Identities=4%  Similarity=-0.129  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIE-----LDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV  199 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIe-----LdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL  199 (233)
                      ..|..+=..+.+.|+.++|.+.|++.-+     ..|+-.       .|+        -+=..+...|+.++|.+.|++..
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdvv-------TYN--------tLI~Glck~G~~~eA~~Lf~eM~  192 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD-------MYN--------AVMLGWARQGAFKELVYVLFMVK  192 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHH-------HHH--------HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHh-------HHH--------HHHHHHHhCCCHHHHHHHHHHHH
Confidence            3466666788899999999999977543     467544       222        35566788999999999999987


Q ss_pred             H--cCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHh
Q 026773          200 A--QNPNDTEESIWCFLCEAQLYGV-DEARNRFLE  231 (233)
Q Consensus       200 ~--lnP~d~e~~~~~~l~~a~Lg~~-dEA~~~~l~  231 (233)
                      +  +.|| .-.|.-.-.|+++.|+. ++|...|.+
T Consensus       193 ~~G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~E  226 (1134)
T 3spa_A          193 DAGLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQ  226 (1134)
T ss_dssp             HTTCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HcCCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            7  4565 33344444578888874 677777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
            N  R+       G+   ++GD+  +V  F+ A++ DP
Sbjct: 13  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.69
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.66
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.62
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.61
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.6
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.56
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.54
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.52
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.48
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.46
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.42
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.25
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.19
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.18
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.16
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.02
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.9
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.83
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.83
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.67
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.57
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.54
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.49
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.38
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.21
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.98
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.53
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.07
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.83
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.53
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	84.12

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.1e-17  Score=127.76  Aligned_cols=89  Identities=13%  Similarity=0.138  Sum_probs=43.3

Q ss_pred             hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL  179 (233)
Q Consensus       100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG  179 (233)
                      +.+-...|...|..++  +++|+++.+|.++|.++..+|++++|+.+|++||+++|+++     ..++         ++|
T Consensus        16 ~~g~~~~Ai~~~~kal--~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~-----~a~~---------~lg   79 (201)
T d2c2la1          16 VGRKYPEAAACYGRAI--TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-----KAHF---------FLG   79 (201)
T ss_dssp             HTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH-----HHHH---------HHH
T ss_pred             HcCCHHHHHHHHHHHH--HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH-----HHHH---------HHH
Confidence            3334444445555444  44555555555555555555555555555555555555444     2211         245


Q ss_pred             HHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          180 IRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       180 ~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      .++..+|++++|+.+|+++++++|+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            5555555555555555555555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.4e-17  Score=123.76  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=91.5

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+-+.+-..+|...|+.++  +++|+++.+|.++|.++..+|++++|+.+|++|++++|+++     ..++        
T Consensus        11 ~~~~~~g~~~eAi~~~~~al--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~--------   75 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAI--KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-----KGYS--------   75 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHcCCHHHHHHHHHHHH--hcCCcchhhhhcccccccccccccccchhhhhHHHhccchh-----hHHH--------
Confidence            44555566678999999999  99999999999999999999999999999999999999998     4444        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  216 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~  216 (233)
                       ++|.++..+|++++|+.+|+++++++|++++.+..+..+.
T Consensus        76 -~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          76 -RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence             4999999999999999999999999999998766554443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6e-17  Score=140.85  Aligned_cols=120  Identities=12%  Similarity=-0.021  Sum_probs=99.1

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG-dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      .+.+....++|..+++.+|  ++||+++.+|.+||.++..+| ++++|+..++++|+++|+++     ..+.        
T Consensus        52 ~~~~~e~~~~Al~~~~~ai--~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~-----~a~~--------  116 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAI--ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-----QVWH--------  116 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHhCCchHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh-----hHHH--------
Confidence            3455567788999999999  999999999999999999876 59999999999999999988     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                       +||.++..+|++++|++.|+++++++|++...+.+++.++..+|++++|...+.++
T Consensus       117 -~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1         117 -HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             -HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             -HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             47888888888888888888888888888887777777788888888887777653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=4.6e-17  Score=132.07  Aligned_cols=112  Identities=18%  Similarity=0.204  Sum_probs=72.6

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+.+.+-...|...|++++  +++|+++.+|.++|.++..+|++++|+++|++|++++|+++     ..+.        
T Consensus        45 ~~y~~~g~~~~A~~~~~~al--~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~--------  109 (259)
T d1xnfa_          45 VLYDSLGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-----YAHL--------  109 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----HHHH--------
T ss_pred             HHHHHCCCHHHHHHHHHHhh--ccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh-----hhHH--------
Confidence            44555555566666666666  66677777777777777777777777777777777777666     2222        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVD  223 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~d  223 (233)
                       ++|.++..+|++++|++.|+++++++|++.....+.+++..+.+..+
T Consensus       110 -~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  156 (259)
T d1xnfa_         110 -NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ  156 (259)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHH
T ss_pred             -HHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHH
Confidence             36777777777777777777777777766666666666666555433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-16  Score=124.95  Aligned_cols=117  Identities=13%  Similarity=0.173  Sum_probs=98.9

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII  175 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~  175 (233)
                      ..+-+.+-...|...|.+++  +++|+++.+|.++|.++..+|++++|+.+|++||+++|++.     ..+.        
T Consensus        18 n~~~~~~~y~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~-----~a~~--------   82 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAI--ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-----KGYY--------   82 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred             HHHHHcCCHHHHHHHhhhcc--ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch-----HHHH--------
Confidence            34555666678999999999  99999999999999999999999999999999999999988     3433        


Q ss_pred             hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HcCCHHHHHHH
Q 026773          176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNR  228 (233)
Q Consensus       176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a--~Lg~~dEA~~~  228 (233)
                       ++|.++..+|++++|+++|+++++++|++++.+.....|..  ..+.+++|...
T Consensus        83 -~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          83 -RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             -HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             59999999999999999999999999999998766655543  34445566543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5e-16  Score=126.76  Aligned_cols=111  Identities=10%  Similarity=0.072  Sum_probs=94.1

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      -+..|...|.+     +.|.++.+|+++|.+++.+|++++|+++|++||++||+++     ..++         ++|.++
T Consensus        20 d~~~Al~~~~~-----i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~-----~a~~---------~~g~~~   80 (192)
T d1hh8a_          20 DWKGALDAFSA-----VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA-----VAYF---------QRGMLY   80 (192)
T ss_dssp             CHHHHHHHHHT-----SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHH
T ss_pred             CHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh-----hhHH---------HHHHHH
Confidence            34446666653     4578899999999999999999999999999999999998     3433         599999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPND----------------TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d----------------~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ..+|+|++|+++|++|++..|.+                .+.++.++.+..++|++++|...+.++
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999986654                355677889999999999999988764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=6.1e-16  Score=125.32  Aligned_cols=112  Identities=13%  Similarity=0.083  Sum_probs=97.3

Q ss_pred             HHHHHHHHhcc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          107 VSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       107 a~~i~~~~i~~--~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      +...+++++..  ..+|..+.+|+++|.++..+|++++|++.|++||+++|+++     ..++         ++|.++..
T Consensus        18 al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~-----~a~~---------~lg~~~~~   83 (259)
T d1xnfa_          18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP-----EVFN---------YLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH-----HHHh---------hhchHHHH
Confidence            34444555521  24567889999999999999999999999999999999998     3333         59999999


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++++|+++|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus        84 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  131 (259)
T d1xnfa_          84 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF  131 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.7e-16  Score=117.38  Aligned_cols=95  Identities=15%  Similarity=0.152  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      ++-+..+|..++..|+|++|+..|++||+++|+++     ..+         .++|.++..+|++++|+++|+++++++|
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~-----~~~---------~~~a~~~~~~~~~~~A~~~~~~al~~~p   68 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH-----VLY---------SNRSAAYAKKGDYQKAYEDGCKTVDLKP   68 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHH---------HHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----hhh---------hcccccccccccccccchhhhhHHHhcc
Confidence            34467899999999999999999999999999998     333         3599999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 NDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++++++.+++.|+..+|++++|...+.++
T Consensus        69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a   97 (117)
T d1elwa_          69 DWGKGYSRKAAALEFLNRFEEAKRTYEEG   97 (117)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999999999875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.8e-16  Score=120.10  Aligned_cols=95  Identities=12%  Similarity=0.065  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      ++.+..+|..++..|+|++|+..|++||+++|+++     .++.         ++|.++..+|++++|+++|+++++++|
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~~~~~~~A~~~~~kal~~~p   75 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYG---------NRSLAYLRTECYGYALGDATRAIELDK   75 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh-----hhhh---------hhHHHHHhccccchHHHHHHHHHHHcc
Confidence            56788999999999999999999999999999988     3433         599999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          204 NDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++++++..++.|+..+|++++|...+.++
T Consensus        76 ~~~~a~~~~g~~~~~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          76 KYIKGYYRRAASNMALGKFRAALRDYETV  104 (159)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999998764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.3e-16  Score=125.31  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      .+++.+...|..++..|+|++|+..|++||+++|+++     ..+.         ++|.+|..+|+|++|+++|++|+++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~-----~~~~---------~lg~~y~~~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYT---------NRALCYLKMQQPEQALADCRRALEL   67 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------hHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            5688899999999999999999999999999999998     3433         5999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++++++..++.++..+|++++|...|.++
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.61  E-value=1.1e-15  Score=114.70  Aligned_cols=94  Identities=6%  Similarity=0.053  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      +.++.+|.+++..|++++|+..|+++|+++|+++     ..+         ..+|.++..+|++++|+.+|+++++++|+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~---------~~lg~~~~~~~~~~~A~~~~~~al~~~p~   82 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE-----EAW---------RSLGLTQAENEKDGLAIIALNHARMLDPK   82 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHH---------HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccc-----hhh---------hhhhhhhhhhhhHHHhhcccccccccccc
Confidence            4568899999999999999999999999999988     333         35999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          205 DTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       205 d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++.+..++.++..+|+.++|.+.+.+.
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999998763

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.2e-15  Score=122.43  Aligned_cols=118  Identities=14%  Similarity=0.037  Sum_probs=93.1

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK  178 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r  178 (233)
                      .+.+-...|...+.+++  +++|+++++|..+|.++..+|++++|++.|+++++..|.++     ..         +..+
T Consensus       248 ~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~---------~~~l  311 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA-----DS---------LNNL  311 (388)
T ss_dssp             HHTTCHHHHHHHHHHHH--HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH-----HH---------HHHH
T ss_pred             HHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccc-----hh---------hhHH
Confidence            33344455666666666  67777777777777777777777777777777777777665     23         3358


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      |.++...|++++|++.|+++++++|++++.+..++.++.++|++++|+..|.++
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  365 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999888999999999999999998764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-15  Score=132.38  Aligned_cols=139  Identities=9%  Similarity=0.045  Sum_probs=109.6

Q ss_pred             cchhhccccccccccccccccchhHHHhcc-CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026773           73 LSVQTHINSLFSTPRGHYLQNRAPTFTRRL-FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAI  151 (233)
Q Consensus        73 ~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~-~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAI  151 (233)
                      +...+.+||.......+    ....+..-+ ...+|...++.++  +++|+++.+|.+||.++..+|++++|++.|++||
T Consensus        66 ~~~ai~lnP~~~~a~~~----r~~~l~~l~~~~~eal~~~~~al--~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal  139 (315)
T d2h6fa1          66 TRDAIELNAANYTVWHF----RRVLLKSLQKDLHEEMNYITAII--EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL  139 (315)
T ss_dssp             HHHHHHHCTTCHHHHHH----HHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             HHHHHHHCCCChHHHHH----HHHHHHHhCcCHHHHHHHHHHHH--HHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhh
Confidence            34445556654433222    112233322 3467888889888  9999999999999999999999999999999999


Q ss_pred             hhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC------HHHH
Q 026773          152 ELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG------VDEA  225 (233)
Q Consensus       152 eLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~------~dEA  225 (233)
                      ++||++.     .. |        .++|.++..+|++++|+++|+++|++||++..++.+++.++..+++      +++|
T Consensus       140 ~~dp~n~-----~a-~--------~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~a  205 (315)
T d2h6fa1         140 NQDAKNY-----HA-W--------QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE  205 (315)
T ss_dssp             HHCTTCH-----HH-H--------HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred             hhhhcch-----HH-H--------HHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHh
Confidence            9999988     33 3        3699999999999999999999999999999999999988888776      4677


Q ss_pred             HHHHHh
Q 026773          226 RNRFLE  231 (233)
Q Consensus       226 ~~~~l~  231 (233)
                      ...+.+
T Consensus       206 i~~~~~  211 (315)
T d2h6fa1         206 VQYTLE  211 (315)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-14  Score=121.01  Aligned_cols=120  Identities=19%  Similarity=0.173  Sum_probs=104.6

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ...+......+...+..++  +++|+  ++.++..+|.++..+|++++|+..|+++++++|+++     ..+.       
T Consensus       145 ~~~~~~~~~~a~~~~~~al--~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~-------  210 (323)
T d1fcha_         145 SLLSDSLFLEVKELFLAAV--RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY-----LLWN-------  210 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH-------
T ss_pred             HHHHhhHHHHHHHHHHHHH--HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccc-----cchh-------
Confidence            3334444556777888888  66775  678899999999999999999999999999999987     3333       


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                        ++|.++..+|++++|++.|+++++++|++++.+..++.++..+|++++|+..|.++
T Consensus       211 --~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  266 (323)
T d1fcha_         211 --KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA  266 (323)
T ss_dssp             --HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             --hhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              59999999999999999999999999999999999999999999999999999874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=9.1e-16  Score=121.38  Aligned_cols=95  Identities=11%  Similarity=0.189  Sum_probs=83.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      .++|.++.+|.+||.++..+|+|++||.+|++||+++|+++     ..++         ++|.++..+|++++|+++|++
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~-----~a~~---------~~g~~~~~l~~~~~A~~~~~~  136 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT-----KALY---------RRAQGWQGLKEYDQALADLKK  136 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh-----hHHH---------hHHHHHHHccCHHHHHHHHHH
Confidence            57899999999999999999999999999999999999998     3444         499999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEAR  226 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~  226 (233)
                      +++++|++.+....+..|..++....++.
T Consensus       137 al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         137 AQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987777777766665555543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.56  E-value=2.1e-15  Score=118.54  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=93.6

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCCCCccchh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ----------GDVVGSVAEFDKAIELDPRQKISGKGAY  165 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l----------GdyeeAIadfdkAIeLdP~~~~~~~~~y  165 (233)
                      ..+.|-+.+.+|...|..++  +++|+++++++++|.++..+          +++++|++.|++||++||+++     ..
T Consensus         5 ~~~~r~~~fe~A~~~~e~al--~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~-----~a   77 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTY--KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD-----EA   77 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HH
T ss_pred             HHHHHHccHHHHHHHHHHHH--hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh-----HH
Confidence            34566667788999999999  99999999999999999865          556899999999999999998     44


Q ss_pred             hhhhhhhhhhhhhHHHHHHcCC-----------cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773          166 RFTISIVGIILKKLIRVSHFNR-----------FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  226 (233)
Q Consensus       166 ~~~~~~~~a~~~rG~al~~lGr-----------yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~  226 (233)
                      ++         ++|.++..+|+           |++|+++|+++++++|++...+..++.+....+.+.|+.
T Consensus        78 ~~---------~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          78 VW---------CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             Hh---------hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44         48999988764           799999999999999999976666666654455455543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-14  Score=118.64  Aligned_cols=108  Identities=10%  Similarity=0.063  Sum_probs=95.1

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      +.+.+-..+|...+..++  ...|.++.++..+|.++..+|++++|++.|++|++++|+++     ..++         +
T Consensus       281 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~  344 (388)
T d1w3ba_         281 LKEKGSVAEAEDCYNTAL--RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA-----AAHS---------N  344 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH-----HHHH---------H
T ss_pred             HHHcCCHHHHHHHHHhhh--ccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---------H
Confidence            344445556777777777  78999999999999999999999999999999999999987     4433         5


Q ss_pred             hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773          178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG  221 (233)
Q Consensus       178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~  221 (233)
                      +|.++..+|++++|++.|+++++++|++++.+.+++.++.++||
T Consensus       345 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999888885

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.5e-14  Score=115.97  Aligned_cols=129  Identities=11%  Similarity=0.068  Sum_probs=106.6

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-------
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-------  169 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-------  169 (233)
                      .+-+.+-.+.|...|++++  +.+|+++++|..+|.++..+|++++|+..|++|++++|+++.     .+...       
T Consensus        28 ~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~  100 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAV--QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT-----ALMALAVSFTNE  100 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccc-----cccccccccccc
Confidence            3445555677888888888  888999999999999888999999999999999998888762     11100       


Q ss_pred             -------------------------------------------------------------h--------hhhhhhhhHH
Q 026773          170 -------------------------------------------------------------S--------IVGIILKKLI  180 (233)
Q Consensus       170 -------------------------------------------------------------~--------~~~a~~~rG~  180 (233)
                                                                                   +        -..++..+|.
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~  180 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  180 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence                                                                         0        0245678899


Q ss_pred             HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++...|++++|++.|+++++.+|++++.+..++.++..+|++++|...|.++
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.5e-14  Score=111.34  Aligned_cols=104  Identities=12%  Similarity=0.153  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh------hhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------ISIVGIILKKLIRVSHFNRFEEGAEQFRI  197 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------~~~~~a~~~rG~al~~lGryeeAi~~f~k  197 (233)
                      +..+..+|..++..|+|++|+..|++||++.|....     ....      .-.+.+++++|.+++.+|+|++|+.++++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~-----~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~   87 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-----FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK   87 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-----CCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc-----cchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhh
Confidence            677889999999999999999999999999998762     1111      01256788999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|+++|+++.++.+++.|+..+|++++|+..|.++
T Consensus        88 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1          88 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV  122 (170)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999875

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.8e-14  Score=108.97  Aligned_cols=94  Identities=15%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP  203 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP  203 (233)
                      +..+-.+|..++..|+|++|+.+|++||+++|+++     ..+.         ++|.++..+|+|++|+++|+++++++|
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~al~l~~   69 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM-----TYIT---------NQAAVYFEKGDYNKCRELCEKAIEVGR   69 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHH---------hHHHHHHHcCchHHHHHHHHHHHHhCc
Confidence            55677888888888888888888888888888877     3332         588888888888888888888888888


Q ss_pred             CCHHH-------HHHHHHHHHHcCCHHHHHHHHHh
Q 026773          204 NDTEE-------SIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       204 ~d~e~-------~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +++..       +...+.++..++++++|+..|.+
T Consensus        70 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k  104 (128)
T d1elra_          70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK  104 (128)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            76543       33345566677888888887765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.1e-14  Score=110.81  Aligned_cols=109  Identities=7%  Similarity=0.088  Sum_probs=90.1

Q ss_pred             hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ---GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l---GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      .++....-+..|+..|..++  +++|+++++++++|+++...   +|+++||..|+++++.+|+..     .       .
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL--~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~-----~-------~   72 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEK--AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-----Q-------R   72 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-----H-------H
T ss_pred             HHhcCHHHHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch-----H-------H
Confidence            34445555678999999999  99999999999999999874   566689999999999998643     1       1


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  218 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~  218 (233)
                      ++++++|.+++.+|+|++|++.|+++++++|++.++...+..+..+
T Consensus        73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            2445699999999999999999999999999999987666655443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.47  E-value=1.2e-13  Score=109.57  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=91.7

Q ss_pred             hHHHhccCcchHHHHHHHHhcc-c------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCcc
Q 026773           96 PTFTRRLFIPSVSGIWDALTGG-N------------NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGK  162 (233)
Q Consensus        96 ~~~~r~~~~~~a~~i~~~~i~~-~------------l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~  162 (233)
                      ..+-+.+-+..|...|+.++.. .            .++....+|.++|.+++.+|++++|+.++++||+++|++.    
T Consensus        23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~----   98 (168)
T d1kt1a1          23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE----   98 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH----
Confidence            4455555567778888877621 1            1122346788999999999999999999999999999988    


Q ss_pred             chhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 026773          163 GAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE  224 (233)
Q Consensus       163 ~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dE  224 (233)
                       ..++         ++|.++..+|+|++|+++|+++++++|++++....++.+...++...+
T Consensus        99 -~a~~---------~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          99 -KGLY---------RRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             -HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence             4444         499999999999999999999999999999987777777776665544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=109.86  Aligned_cols=112  Identities=12%  Similarity=0.104  Sum_probs=90.4

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCc
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSR---------------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISG  161 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~---------------~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~  161 (233)
                      .+-+.+-...|...|..++  +..|.               ...+|.++|.++..+|+|++|+.++++||+++|+++   
T Consensus        22 ~~~~~~~~~~Ai~~y~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~---   96 (170)
T d1p5qa1          22 VYFKEGKYKQALLQYKKIV--SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---   96 (170)
T ss_dssp             HHHHHTCHHHHHHHHHHHH--HHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred             HHHHcCCHHHHHHHHHHHH--HHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch---
Confidence            3444555566888888877  43332               246788999999999999999999999999999988   


Q ss_pred             cchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 026773          162 KGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE  224 (233)
Q Consensus       162 ~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dE  224 (233)
                        ..++         ++|.+++.+|+|++|+.+|+++++++|+|++.......+...++...+
T Consensus        97 --~a~~---------~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          97 --KGLS---------RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             --HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --hhhH---------HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence              4444         499999999999999999999999999999987777777665554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=101.30  Aligned_cols=88  Identities=11%  Similarity=0.032  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln  202 (233)
                      +++..+.+|.+++.+|||++|+..|++|+++.|++..     . + ...++++.++|.+++.+|++++|++.|+++|+++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-----~-~-~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----S-T-IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----C-S-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-----c-C-ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            4677899999999999999999999999999998762     1 1 1235678889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 026773          203 PNDTEESIWCFLCEA  217 (233)
Q Consensus       203 P~d~e~~~~~~l~~a  217 (233)
                      |+++++..++...+.
T Consensus        77 P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          77 PEHQRANGNLKYFEY   91 (95)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999998777655443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.2e-14  Score=106.34  Aligned_cols=99  Identities=10%  Similarity=0.104  Sum_probs=88.2

Q ss_pred             HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL  176 (233)
Q Consensus        97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~  176 (233)
                      .+-+.+-+.+|...|+.++  +++|+++.+|.++|.++..+|+|++|+.+|++||+++|+++     ..+.  ....+|.
T Consensus        13 ~~~~~~~y~~Ai~~y~~al--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-----~~~~--~~a~~~~   83 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAK--ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-----EDYR--QIAKAYA   83 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-----TCHH--HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH--HhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-----HHHH--HHHHHHH
Confidence            3555666688999999999  99999999999999999999999999999999999999988     3322  2467888


Q ss_pred             hhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          177 KKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       177 ~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      ++|.++..++++++|++.|++++..+|+
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999885

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.46  E-value=3.7e-13  Score=106.65  Aligned_cols=110  Identities=11%  Similarity=0.141  Sum_probs=92.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCc-cchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISG-KGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~-~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      .++.+..+|..++..|+|++|+..|++||++-|...... +.......-...++.|+|.+++.+|+|++|++++++++++
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            367788999999999999999999999999988765200 0000000123567889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|++..++++++.|+..+|++++|...|.++
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999998764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.46  E-value=1.7e-13  Score=107.57  Aligned_cols=106  Identities=15%  Similarity=0.138  Sum_probs=84.6

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCc
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSR----------------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISG  161 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~----------------~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~  161 (233)
                      +-+.+-...|...|..++  +.-|.                ....|.++|.+++.+|++++|+.++++||+++|++.   
T Consensus        27 ~f~~~~y~~A~~~Y~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~---  101 (153)
T d2fbna1          27 FFKKNEINEAIVKYKEAL--DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---  101 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---
T ss_pred             HHHcCCHHHHHHHHHHHH--hhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhh---
Confidence            334455566788888876  22221                135788999999999999999999999999999998   


Q ss_pred             cchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773          162 KGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL  219 (233)
Q Consensus       162 ~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L  219 (233)
                        ..+++         +|.++..+|++++|+.+|+++++++|++++.......|..++
T Consensus       102 --ka~~~---------~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1         102 --KALYK---------LGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             --HHHHH---------HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             --hhhHH---------hHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence              44444         999999999999999999999999999998766665555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.46  E-value=6.4e-13  Score=104.17  Aligned_cols=109  Identities=8%  Similarity=0.081  Sum_probs=91.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh---hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT---ISIVGIILKKLIRVSHFNRFEEGAEQFRIDV  199 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~---~~~~~a~~~rG~al~~lGryeeAi~~f~kAL  199 (233)
                      .+..+...|..++..|+|++|+..|++||++-|..... +....+.   ...+.+++|+|.+++.+|++++|+++++++|
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-hhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            35678899999999999999999999999998876521 0111111   0125578899999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          200 AQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       200 ~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +++|++..++++++.|+..+|++++|+..|.++
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.4e-13  Score=108.43  Aligned_cols=91  Identities=13%  Similarity=0.089  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      ..+.++|..+...|||++|++.|++   +.|.++     ..         ++++|.+++.+|++++|+++|++|+++||+
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~-----~~---------~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~   68 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSA---VQDPHS-----RI---------CFNIGCMYTILKNMTEAEKAFTRSINRDKH   68 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCH-----HH---------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCH-----HH---------HHHHHHHHHHcCCchhHHHHHHHHHHHhhh
Confidence            3456899999999999999999986   355455     23         236999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          205 DTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       205 d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++..+..++.|+.++|++++|...|.++
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kA   96 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEA   96 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHH
Confidence            9999999999999999999999988764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=4.3e-13  Score=105.70  Aligned_cols=109  Identities=10%  Similarity=0.080  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccch--hhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGA--YRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ  201 (233)
Q Consensus       124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~--y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l  201 (233)
                      ++.+..+|..++..|+|++|+..|++||++.|.........  .......+.+++++|.++..+|+|++|+.+|+++|++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            45577899999999999999999999998876433100000  0001123667889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          202 NPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +|+++.+++++|.|+..+|++++|+..|.++
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  137 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKA  137 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.41  E-value=2.6e-13  Score=101.47  Aligned_cols=89  Identities=9%  Similarity=0.059  Sum_probs=80.5

Q ss_pred             hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773           95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI  174 (233)
Q Consensus        95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a  174 (233)
                      ...+.+.+-..+|...+++++  +++|+++++|..+|.++...|++++|+.+|++||+++|+++     ..+.       
T Consensus        23 g~~~~~~g~~~~A~~~~~~al--~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~a~~-------   88 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVC--QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI-----AVHA-------   88 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH-------
T ss_pred             HHHHHHHhhhHHHHHHHhhhc--ccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc-----cchH-------
Confidence            345666777788999999999  99999999999999999999999999999999999999998     4444       


Q ss_pred             hhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773          175 ILKKLIRVSHFNRFEEGAEQFRIDV  199 (233)
Q Consensus       175 ~~~rG~al~~lGryeeAi~~f~kAL  199 (233)
                        ++|.++..+|++++|++.+++.|
T Consensus        89 --~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          89 --ALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHCCCHHHHHHHHHHHh
Confidence              59999999999999999999976

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.33  E-value=1.5e-12  Score=101.73  Aligned_cols=105  Identities=11%  Similarity=-0.034  Sum_probs=82.6

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh--hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773          124 AVVAIRR--GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT--ISIVGIILKKLIRVSHFNRFEEGAEQFRIDV  199 (233)
Q Consensus       124 a~Ay~~R--G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~--~~~~~a~~~rG~al~~lGryeeAi~~f~kAL  199 (233)
                      +.+|..+  |..++..|+|++|+..|++||+++|+.+.    ...+.  .....++.++|.++..+|++++|++++++++
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~----~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP----EEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT----TSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhh----hhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            4555555  88889999999999999999999999872    11110  1124567899999999999999999999999


Q ss_pred             HcCCC-------C----HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          200 AQNPN-------D----TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       200 ~lnP~-------d----~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      ++.|.       .    ...+..++.++..+|++++|...|.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          83 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            87542       2    223456788999999999999998864

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.7e-12  Score=110.33  Aligned_cols=112  Identities=12%  Similarity=-0.005  Sum_probs=98.1

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD--VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd--yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      -...+..+++.++  +.+|+++.+|..+|.++..+|+  +++|+..++++++++|++.     ..++.        ..|.
T Consensus        88 ~~~~al~~~~~~l--~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-----~~~~~--------~~~~  152 (334)
T d1dcea1          88 LVKAELGFLESCL--RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-----HCWDY--------RRFV  152 (334)
T ss_dssp             HHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH-----HHHHH--------HHHH
T ss_pred             HHHHHHHHHHHHH--HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhh-----hhhhh--------HHHH
Confidence            3456778888888  8999999999999999988764  8999999999999999987     34332        4789


Q ss_pred             HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773          181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  229 (233)
Q Consensus       181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~  229 (233)
                      ++...|++++|++.++++++++|++.+.+.+++.++..+|++++|...+
T Consensus       153 ~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         153 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             HHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             HHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999999999999999999999999999988775443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=1.3e-10  Score=94.33  Aligned_cols=112  Identities=9%  Similarity=-0.043  Sum_probs=94.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh--------hhhhhhhhhhHHHHHHcCCcHHHHH
Q 026773          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT--------ISIVGIILKKLIRVSHFNRFEEGAE  193 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~--------~~~~~a~~~rG~al~~lGryeeAi~  193 (233)
                      +..+++..+|......|++++|+..|++|+++.|..+..+-...-|-        ...+.++.++|.++..+|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            34678899999999999999999999999999998763000001111        1337889999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773          194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR  233 (233)
Q Consensus       194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~  233 (233)
                      +++++++++|.+...+..++.++..+|+.++|+..|.+.|
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.18  E-value=1.1e-11  Score=96.80  Aligned_cols=85  Identities=11%  Similarity=-0.034  Sum_probs=69.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc----------CCcHHHHHHHHHHHHcC
Q 026773          133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF----------NRFEEGAEQFRIDVAQN  202 (233)
Q Consensus       133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l----------GryeeAi~~f~kAL~ln  202 (233)
                      .+-+++.|++|+..|++|+++||+++     ..+.         ++|.++..+          +++++|++.|++|++++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~-----~~~~---------~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~   71 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDA-----DNLT---------RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID   71 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcch-----HHHH---------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence            35567889999999999999999998     3433         599999865          55689999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHh
Q 026773          203 PNDTEESIWCFLCEAQLYG-----------VDEARNRFLE  231 (233)
Q Consensus       203 P~d~e~~~~~~l~~a~Lg~-----------~dEA~~~~l~  231 (233)
                      |++++.++++|.++..+|+           +++|...|.+
T Consensus        72 P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~k  111 (145)
T d1zu2a1          72 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ  111 (145)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhc
Confidence            9999999999998877653           4666666654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=2e-10  Score=97.29  Aligned_cols=114  Identities=11%  Similarity=0.015  Sum_probs=97.4

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd----------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      ..++|..+++.++  +++|+++.+|..|+.++..+++          +++|+..|+++++.+|+++     ..+.     
T Consensus        44 ~~~~al~~~~~~l--~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~-----~~~~-----  111 (334)
T d1dcea1          44 LDESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-----GTWH-----  111 (334)
T ss_dssp             CSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHH-----
T ss_pred             ccHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH-----HHHH-----
Confidence            4578889999999  8999999999999988776554          8999999999999999998     4444     


Q ss_pred             hhhhhhHHHHHHcCC--cHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHhh
Q 026773          173 GIILKKLIRVSHFNR--FEEGAEQFRIDVAQNPNDTEESI-WCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       173 ~a~~~rG~al~~lGr--yeeAi~~f~kAL~lnP~d~e~~~-~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                          .+|.++..+++  +++|+..+.++++++|++...+. ..+.+....+..++|...+.++
T Consensus       112 ----~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~  170 (334)
T d1dcea1         112 ----HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (334)
T ss_dssp             ----HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             ----HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHH
Confidence                49999998876  79999999999999999988754 3456777889999999988654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.16  E-value=1.3e-11  Score=96.17  Aligned_cols=97  Identities=10%  Similarity=-0.015  Sum_probs=77.4

Q ss_pred             cCcchHHHHHHHHhcccCCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhh--
Q 026773          102 LFIPSVSGIWDALTGGNNNSRE------------AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRF--  167 (233)
Q Consensus       102 ~~~~~a~~i~~~~i~~~l~P~~------------a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~--  167 (233)
                      +-...|...|.+++  +++|+.            +.+|.++|.++..+|++++|+.++++||++.|+...     ..-  
T Consensus        23 g~y~~Ai~~y~~Al--~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~-----~~~~~   95 (156)
T d2hr2a1          23 GEYDEAAANCRRAM--EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE-----LNQDE   95 (156)
T ss_dssp             TCHHHHHHHHHHHH--HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC-----TTSTH
T ss_pred             CCHHHHHHHHHHHH--HhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc-----ccccc
Confidence            34567888999988  555543            578999999999999999999999999999875441     100  


Q ss_pred             hhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773          168 TISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       168 ~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d  205 (233)
                      ......+++++|.++..+|++++|+++|++|+++.|+.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            01224577889999999999999999999999997754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.7e-10  Score=87.20  Aligned_cols=90  Identities=9%  Similarity=0.032  Sum_probs=76.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC---CcHHHHHHHHHHHHcCCCC
Q 026773          129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN---RFEEGAEQFRIDVAQNPND  205 (233)
Q Consensus       129 ~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG---ryeeAi~~f~kAL~lnP~d  205 (233)
                      ++...+...+++++|.+.|++|++++|+++     ...+         ++|.++...+   ++++|++.|+++++.+|++
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~-----~~~~---------n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~   69 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSK-----STQF---------EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCH-----HHHH---------HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCH-----HHHH---------HHHHHHHHhcchHHHHHHHHHHHHHHhccCCc
Confidence            456678889999999999999999999998     3433         5999998754   5567999999999999875


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          206 --TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       206 --~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                        ++.++.+|.|+.++|++++|+..|.++
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence              346778899999999999999998764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.6e-10  Score=105.66  Aligned_cols=76  Identities=11%  Similarity=-0.074  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~  204 (233)
                      .++.++|.++.+.|++++|+..|++|++++|+++     ..+.         ++|.++...|++.+|+..|.+|+.++|.
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~-----~~~~---------~Lg~~~~~~~~~~~A~~~y~ral~~~~~  218 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG-----QPYN---------QLAILASSKGDHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence            4555555555555555555555555555555555     2222         3555555555555555555555555555


Q ss_pred             CHHHHHHHHH
Q 026773          205 DTEESIWCFL  214 (233)
Q Consensus       205 d~e~~~~~~l  214 (233)
                      .+.++.++..
T Consensus       219 ~~~a~~nL~~  228 (497)
T d1ya0a1         219 FPAASTNLQK  228 (497)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            5555444433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=1.6e-09  Score=91.05  Aligned_cols=134  Identities=11%  Similarity=0.072  Sum_probs=101.0

Q ss_pred             cccchhHHHhccCcchHHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhh
Q 026773           91 LQNRAPTFTRRLFIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYR  166 (233)
Q Consensus        91 ~~~~~~~~~r~~~~~~a~~i~~~~i~~----~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~  166 (233)
                      +.++...+...+-+++|...|.+++..    ...+.-+.+|.+.|.++..+|++++|++.|++|+++.++...     ..
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-----~~  114 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FR  114 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-----ch
Confidence            334555566666678888888887622    112345689999999999999999999999999999887651     11


Q ss_pred             hhhhhhhhhhhhHHHHHH-cCCcHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          167 FTISIVGIILKKLIRVSH-FNRFEEGAEQFRIDVAQNPND------TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       167 ~~~~~~~a~~~rG~al~~-lGryeeAi~~f~kAL~lnP~d------~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                         ....++.+.|.++.. +|++++|++.|.+|+++.+.+      ...+...+.++..+|++++|...+.++
T Consensus       115 ---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~  184 (290)
T d1qqea_         115 ---RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL  184 (290)
T ss_dssp             ---HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence               124566778988865 699999999999999885432      222455677888999999999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=6.6e-09  Score=87.21  Aligned_cols=130  Identities=10%  Similarity=-0.016  Sum_probs=100.5

Q ss_pred             cchhHHHhccCcchHHHHHHHHhcccCCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCCccchh
Q 026773           93 NRAPTFTRRLFIPSVSGIWDALTGGNNNSRE------AVVAIRRGMLLFR-QGDVVGSVAEFDKAIELDPRQKISGKGAY  165 (233)
Q Consensus        93 ~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~------a~Ay~~RG~a~~~-lGdyeeAIadfdkAIeLdP~~~~~~~~~y  165 (233)
                      +....+.+.+-.+.|...|..++  ++.++.      ..++..+|.++.. .|++++|++.|++|+++.+....    ..
T Consensus        82 ~~g~~y~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~----~~  155 (290)
T d1qqea_          82 EAYKCFKSGGNSVNAVDSLENAI--QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS----VA  155 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC----HH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHhh--HHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc----hh
Confidence            34455666667778888888877  333332      6888899988865 69999999999999999876541    11


Q ss_pred             hhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          166 RFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE-------ESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       166 ~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e-------~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                          ....++.++|.++..+|+|++|++.|+++++..|++..       .+...+.|....|+++.|...+.++
T Consensus       156 ----~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         156 ----LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             ----hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                12456788999999999999999999999999987642       2344567777899999999988765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.5e-08  Score=80.98  Aligned_cols=125  Identities=8%  Similarity=-0.077  Sum_probs=98.4

Q ss_pred             HHhccCcchHHHHHHHHhcccCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773           98 FTRRLFIPSVSGIWDALTGGNNNSRE-----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV  172 (233)
Q Consensus        98 ~~r~~~~~~a~~i~~~~i~~~l~P~~-----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~  172 (233)
                      .-..+-...|..++.+++  +..|++     ..++..+|.++..+|++++|+..|++++++.|...     ...   ..+
T Consensus        22 ~~~~g~~~~A~~~~~~aL--~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~---~~~   91 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-----VWH---YAL   91 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-----CHH---HHH
T ss_pred             HHHCCCHHHHHHHHHHHH--hhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-----chH---HHH
Confidence            344556678999999998  778876     46899999999999999999999999999988765     221   124


Q ss_pred             hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC-----C---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN-----D---TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~-----d---~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .++.++|.++...|++.+|++.+.+++++.+.     .   ......++.+....|++++|...+.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~  159 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG  159 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence            56778999999999999999999999986432     1   123345567778899999999887653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.6e-08  Score=80.92  Aligned_cols=103  Identities=10%  Similarity=-0.134  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA  200 (233)
Q Consensus       121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~  200 (233)
                      +.+++.+..||.++...|++++|++.|++|+++.|++.     .. ..   +.++..+|.++..+|++++|++.|+++++
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~-----~~-~~---~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----FY-SR---IVATSVLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----HH-HH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC-----cH-HH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999876     21 11   34666799999999999999999999999


Q ss_pred             cCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          201 QNPNDT------EESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       201 lnP~d~------e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      +.|...      ......+.+....|++++|...+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  117 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA  117 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            866432      22344556677899999999887653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.73  E-value=2.5e-09  Score=91.92  Aligned_cols=114  Identities=11%  Similarity=-0.003  Sum_probs=81.9

Q ss_pred             cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR  181 (233)
Q Consensus       102 ~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a  181 (233)
                      +-..+|...+.+++  +.+|+|++++..+|.++...|++++|++.|+++++++|++.     ..+.         .+|.+
T Consensus        10 G~l~eAl~~l~~al--~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~-----~~~~---------~l~~l   73 (264)
T d1zbpa1          10 GQLQQALELLIEAI--KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL-----PGAS---------QLRHL   73 (264)
T ss_dssp             TCHHHHHHHHHHHH--HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH-----HHHH---------HHHHH
T ss_pred             CCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH-----HHHH---------HHHHH
Confidence            44567888999998  99999999999999999999999999999999999999887     3333         35666


Q ss_pred             HHHcCCcHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773          182 VSHFNRFEEGAEQFRIDVAQ-NPNDTEESIWCFLCEAQLYGVDEARNRFLE  231 (233)
Q Consensus       182 l~~lGryeeAi~~f~kAL~l-nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~  231 (233)
                      +...++.+++...+.+...+ +|++.......+......|+.++|...+.+
T Consensus        74 l~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~  124 (264)
T d1zbpa1          74 VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ  124 (264)
T ss_dssp             HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            66666666655554443333 333333333344555566777777776654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.2e-08  Score=93.04  Aligned_cols=112  Identities=8%  Similarity=-0.051  Sum_probs=69.6

Q ss_pred             CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      +...+...+.+..  +++|+++.++.++|.++...|++++|+..++++++++|...                +.++|.++
T Consensus       101 ~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~LG~l~  162 (497)
T d1ya0a1         101 FYTQLLQELCTVF--NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC----------------LVHLGDIA  162 (497)
T ss_dssp             HHHHHHHHHTC---------------------------------CCHHHHHHHHHH----------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHH--CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHH----------------HHHHHHHH
Confidence            3445566666666  78999999999999999999999999999999999998432                23589999


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+.|++++|+..|++|++++|+++..+..+|.+....|+..+|...|.++
T Consensus       163 ~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.5e-07  Score=79.17  Aligned_cols=118  Identities=14%  Similarity=0.061  Sum_probs=90.8

Q ss_pred             HhccCcchHHHHHHHHhcccCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773           99 TRRLFIPSVSGIWDALTGGNNNSREA-VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK  177 (233)
Q Consensus        99 ~r~~~~~~a~~i~~~~i~~~l~P~~a-~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~  177 (233)
                      .+.+-...+..+|+.++  +..|.+. .+|...+....+.|++++|.+.|++|++..|...     ..+.         .
T Consensus       110 ~~~~~~~~a~~i~~~~l--~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~-----~~~~---------~  173 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLL--AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH-----HVYV---------T  173 (308)
T ss_dssp             HHTTCHHHHHHHHHHHH--TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT-----HHHH---------H
T ss_pred             HhcccHHHHHHHHHHHH--HHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-----HHHH---------H
Confidence            34445677888999988  7788664 5789999999999999999999999999999877     2322         3


Q ss_pred             hHHHHH-HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          178 KLIRVS-HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       178 rG~al~-~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      .+.... ..|+.+.|...|+++++.+|++++.+....--+...|+.+.|+..|.++
T Consensus       174 ~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            555543 4588888999999999999988875555544556888999998888764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=1.6e-07  Score=75.71  Aligned_cols=71  Identities=10%  Similarity=0.111  Sum_probs=62.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH-
Q 026773          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID-  198 (233)
Q Consensus       120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA-  198 (233)
                      .+....++..+|.++..+|++++|+.+++++++++|.+.     ..+.         .++.++..+|++++|++.|+++ 
T Consensus        63 ~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e-----~~~~---------~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          63 VEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE-----PLWT---------QLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH---------HHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccH-----HHHH---------HHHHHHHHhcCHHHHHHHHHHHH
Confidence            344558899999999999999999999999999999987     4444         4999999999999999999998 


Q ss_pred             ------HHcCCC
Q 026773          199 ------VAQNPN  204 (233)
Q Consensus       199 ------L~lnP~  204 (233)
                            +-++|.
T Consensus       129 ~~L~~eLG~~P~  140 (179)
T d2ff4a2         129 TTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHSCCCC
T ss_pred             HHHHHHhCCCcC
Confidence                  557886

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=7.3e-07  Score=74.84  Aligned_cols=114  Identities=6%  Similarity=-0.005  Sum_probs=96.6

Q ss_pred             cchHHHHHHHHhccc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773          104 IPSVSGIWDALTGGN-NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV  182 (233)
Q Consensus       104 ~~~a~~i~~~~i~~~-l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al  182 (233)
                      ..++..+|+.++  + ..|.+...|...+.....+|++++|...|+++|+.+|.+.     ...|.        ..+...
T Consensus        80 ~~~a~~i~~ral--~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~-----~~~w~--------~~~~~~  144 (308)
T d2onda1          80 SDEAANIYERAI--STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-----TLVYI--------QYMKFA  144 (308)
T ss_dssp             HHHHHHHHHHHH--TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-----HHHHH--------HHHHHH
T ss_pred             hHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh-----HHHHH--------HHHHHH
Confidence            356788999888  5 5899999999999999999999999999999999999887     44454        578888


Q ss_pred             HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhh
Q 026773          183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ-LYGVDEARNRFLEA  232 (233)
Q Consensus       183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~-Lg~~dEA~~~~l~~  232 (233)
                      ...|++++|.+.|.++++..|.+.+.+.+.+..+.. .|+.+.|+..|..+
T Consensus       145 ~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~  195 (308)
T d2onda1         145 RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG  195 (308)
T ss_dssp             HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            889999999999999999999999877766655444 57889999887653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.49  E-value=8.2e-08  Score=82.16  Aligned_cols=79  Identities=13%  Similarity=0.077  Sum_probs=64.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773          133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC  212 (233)
Q Consensus       133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~  212 (233)
                      -.+..|++++|++.++++|+.+|+++     ...+.         +|.++...|++++|++.|+++++++|++...+...
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~-----~ar~~---------La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l   70 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDA-----SLRSS---------FIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   70 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCH-----HHHHH---------HHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCH-----HHHHH---------HHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            45678999999999999999999998     45555         99999999999999999999999999998876655


Q ss_pred             HHHHHHcCCHHHH
Q 026773          213 FLCEAQLYGVDEA  225 (233)
Q Consensus       213 ~l~~a~Lg~~dEA  225 (233)
                      +......+..+++
T Consensus        71 ~~ll~a~~~~~~a   83 (264)
T d1zbpa1          71 RHLVKAAQARKDF   83 (264)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHH
Confidence            5444443434443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.6e-07  Score=65.73  Aligned_cols=59  Identities=7%  Similarity=-0.213  Sum_probs=51.7

Q ss_pred             hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773          174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPND-------TEESIWCFLCEAQLYGVDEARNRFLEA  232 (233)
Q Consensus       174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d-------~e~~~~~~l~~a~Lg~~dEA~~~~l~~  232 (233)
                      -++++|.+++..|+|++|+++|++|+++.|++       ++.+.+++.|..++|++++|+..+.++
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            34569999999999999999999999997754       456778899999999999999998875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=3.4e-06  Score=65.82  Aligned_cols=83  Identities=7%  Similarity=0.000  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773          122 REAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID  198 (233)
Q Consensus       122 ~~a~Ay~~RG~a~~~lG---dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA  198 (233)
                      -.+.+-++.|+++....   +.++||..++++++.+|....    .++|         ++|++++.+|+|++|.+.++++
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~r----d~lY---------~Lav~yyklgdy~~A~~~~~~~   99 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR----ECLY---------YLTIGCYKLGEYSMAKRYVDTL   99 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH----HHHH---------HHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHH----HHHH---------HHHHHHHHHhhHHHHHHHHHHH
Confidence            45889999999999764   556899999999999996641    3444         4999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHH
Q 026773          199 VAQNPNDTEESIWCFLCEA  217 (233)
Q Consensus       199 L~lnP~d~e~~~~~~l~~a  217 (233)
                      |+++|++..+....-.+..
T Consensus       100 L~ieP~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1         100 FEHERNNKQVGALKSMVED  118 (124)
T ss_dssp             HHHCTTCHHHHHHHHHHHH
T ss_pred             HccCCCcHHHHHHHHHHHH
Confidence            9999999987655544443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.98  E-value=5.4e-05  Score=60.81  Aligned_cols=90  Identities=11%  Similarity=0.061  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH----cCCcHHHHHHHHHH
Q 026773          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH----FNRFEEGAEQFRID  198 (233)
Q Consensus       123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~----lGryeeAi~~f~kA  198 (233)
                      ||++++++|..++..||+++|++.|++|.+.+  ++     ...+         ++|.++..    ..+++.|...+.++
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~-----~A~~---------~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--EN-----SGCF---------NLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CH-----HHHH---------HHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CH-----HHHH---------HHHHHHHcCCCcchhHHHHHHhhccc
Confidence            68899999999999999999999999998765  33     2333         48888876    66888888888887


Q ss_pred             HHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 026773          199 VAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFL  230 (233)
Q Consensus       199 L~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l  230 (233)
                      .+.+  ++......+.....    ..+.++|...+.
T Consensus        65 ~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~   98 (265)
T d1ouva_          65 CDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYS   98 (265)
T ss_dssp             HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             cccc--ccchhhccccccccccccchhhHHHHHHHh
Confidence            7654  45555555544433    345566665554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=2.5e-05  Score=60.77  Aligned_cols=52  Identities=10%  Similarity=0.020  Sum_probs=45.8

Q ss_pred             chHHHHHHHHhcccCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773          105 PSVSGIWDALTGGNNNSRE-AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~-a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~  158 (233)
                      ..+..++..+.  +.+|.+ .+.++.+|++++++|+|++|.+.++++|+++|++.
T Consensus        55 ~~gI~lLe~~~--~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          55 RLGVKILTDIY--KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHH--HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHH--hcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            45667777777  677866 48999999999999999999999999999999987

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.07  E-value=0.00083  Score=53.55  Aligned_cols=69  Identities=13%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH----cCCcHHH
Q 026773          120 NSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH----FNRFEEG  191 (233)
Q Consensus       120 ~P~~a~Ay~~RG~a~~~----lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~----lGryeeA  191 (233)
                      ++.++.+.+++|.++..    ..|+++|+..|++|.+.+.  +     ...+         ++|..+..    ..++++|
T Consensus       174 ~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~-----~a~~---------~LG~~y~~G~g~~~n~~~A  237 (265)
T d1ouva_         174 DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--G-----GGCF---------NLGAMQYNGEGVTRNEKQA  237 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--H-----HHHH---------HHHHHHHTTSSSSCCSTTH
T ss_pred             cccccccccchhhhcccCcccccchhhhhhhHhhhhcccC--H-----HHHH---------HHHHHHHcCCCCccCHHHH
Confidence            45566666666666665    5566667777777666643  2     1222         36666654    3366667


Q ss_pred             HHHHHHHHHcCCC
Q 026773          192 AEQFRIDVAQNPN  204 (233)
Q Consensus       192 i~~f~kAL~lnP~  204 (233)
                      +++|++|.+....
T Consensus       238 ~~~~~kAa~~g~~  250 (265)
T d1ouva_         238 IENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHTCH
T ss_pred             HHHHHHHHHCcCH
Confidence            7777666666543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.83  E-value=0.0061  Score=44.81  Aligned_cols=104  Identities=12%  Similarity=-0.050  Sum_probs=65.8

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH  184 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~  184 (233)
                      +.|...|.++.  +.  +++.+.+.+|.  ....++++|+..|++|.+.+  ++     ...         +++|..+..
T Consensus        10 ~~A~~~~~kaa--~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--~~-----~a~---------~~Lg~~y~~   67 (133)
T d1klxa_          10 KKAIQYYVKAC--EL--NEMFGCLSLVS--NSQINKQKLFQYLSKACELN--SG-----NGC---------RFLGDFYEN   67 (133)
T ss_dssp             HHHHHHHHHHH--HT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--CH-----HHH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHH--HC--CChhhhhhhcc--ccccCHHHHHHHHhhhhccc--ch-----hhh---------hhHHHhhhh
Confidence            34566666665  32  45566666653  45567888888888887764  33     222         236776664


Q ss_pred             ----cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773          185 ----FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA  232 (233)
Q Consensus       185 ----lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~  232 (233)
                          ..++++|++.|+++.+.  .++++...++.++..    ..+.++|...|.++
T Consensus        68 g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          68 GKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence                45678888888888775  456666667666554    34677777777653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.53  E-value=0.006  Score=44.85  Aligned_cols=80  Identities=9%  Similarity=-0.016  Sum_probs=62.8

Q ss_pred             chHHHHHHHHhcccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI  180 (233)
Q Consensus       105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~----lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~  180 (233)
                      .++...+..+.    +.+++.+.+.+|..+..    ..|+++|++.|++|.+...  +     ...         +++|.
T Consensus        40 ~~a~~~~~~aa----~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~-----~a~---------~~Lg~   99 (133)
T d1klxa_          40 QKLFQYLSKAC----ELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND--Q-----DGC---------LILGY   99 (133)
T ss_dssp             HHHHHHHHHHH----HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--H-----HHH---------HHHHH
T ss_pred             HHHHHHHhhhh----cccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc--c-----hHH---------HHHHH
Confidence            34556666655    46899999999999987    5789999999999998764  3     222         34898


Q ss_pred             HHHH----cCCcHHHHHHHHHHHHcCCC
Q 026773          181 RVSH----FNRFEEGAEQFRIDVAQNPN  204 (233)
Q Consensus       181 al~~----lGryeeAi~~f~kAL~lnP~  204 (233)
                      .+..    ..++++|++.|++|.++...
T Consensus       100 ~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         100 KQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            8877    46899999999999998654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=84.12  E-value=3.5  Score=35.02  Aligned_cols=81  Identities=9%  Similarity=-0.130  Sum_probs=50.3

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773          137 QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  216 (233)
Q Consensus       137 lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~  216 (233)
                      .++.+.|....+....-..+..     ...|.         .|.++ ..++++.+...++..-.-....+...+|.+.+.
T Consensus       265 ~~~~~~a~~~~~~~~~~~~~~~-----~~~w~---------~~~al-~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~  329 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRSQSTS-----LIERR---------VRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL  329 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTCCCHH-----HHHHH---------HHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHhhcccccchH-----HHHHH---------HHHHH-HcCChHHHHHHHHhcCcccccHHHHHHHHHHHH
Confidence            3455666666655544433322     23333         45544 457888888877654322223456679999999


Q ss_pred             HHcCCHHHHHHHHHhh
Q 026773          217 AQLYGVDEARNRFLEA  232 (233)
Q Consensus       217 a~Lg~~dEA~~~~l~~  232 (233)
                      ..+|+.++|...|..+
T Consensus       330 ~~~G~~~~A~~~~~~~  345 (450)
T d1qsaa1         330 LERGREAEAKEILHQL  345 (450)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHcCChhhHHHHHHHH
Confidence            9999999998887653