Citrus Sinensis ID: 026778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILLR
Secondary Structure (PSIPRED)
cccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccEEEcccccHHHHHHHcccHHHHHHHHcccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccEEEEccHHHHHcccccEEEccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEcccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEcccccHHHHHHccccHHHHHHHHHcccccccccccccEEccccccccccccHHHHHHcHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccEEEEccHHHHcccccHHHHcccHccEccc
Coil and Loop (DISEMBL)
mrfisesseeripcyrvldddgqpfpdssfvKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAaiknddfvvpqyrepgvllwRGFSMQEFAnqcfgnkadygkgrqmpihygsnkhnyftVSSTIATQLPHAVGAAYALkmdrkdacavtyfgdggtsegdfHAALnfsavteaPVIFIcrnngwaistpisdqfrsipslpclsnILTILLR
Flexible Loop (DISEMBL)
mrfisesseeriPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPisdqfrsipslpclsniltillr
Low Complexity Region (SEG)
MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEainiasaaaiKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILLR
Disordered region (IsUnstruct)
************PCYRVLDD****F*DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL*
Disordered Region (DISOPRED)
*******SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILLR
Disordered Region (DISEMBL)
*********ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILLR
Disordered Region (DISPRO)
**FISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q54M22	441	2-oxoisovalerate dehydrog	yes	no	0.866	0.458	0.538	3e-64
O45924	431	2-oxoisovalerate dehydrog	yes	no	0.875	0.473	0.531	2e-62
P12694	445	2-oxoisovalerate dehydrog	yes	no	0.927	0.485	0.509	7e-59
A5A6H9	445	2-oxoisovalerate dehydrog	yes	no	0.927	0.485	0.509	8e-59
Q8HXY4	445	2-oxoisovalerate dehydrog	N/A	no	0.927	0.485	0.509	8e-59
P11960	441	2-oxoisovalerate dehydrog	yes	no	0.927	0.489	0.504	5e-58
P11178	455	2-oxoisovalerate dehydrog	yes	no	0.927	0.474	0.504	9e-58
P50136	442	2-oxoisovalerate dehydrog	yes	no	0.927	0.488	0.5	3e-57
Q72GU1	367	2-oxoisovalerate dehydrog	yes	no	0.858	0.544	0.411	2e-35
P37940	330	2-oxoisovalerate dehydrog	yes	no	0.759	0.536	0.407	9e-35

>sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 146/208 (70%), Gaps = 6/208 (2%)

Query: 12  IPCYRVLDDDG---QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
           IPCY ++D +G   +P  D +F K      IKMY  M+TL  MD+I Y+ QRQGRISFY+
Sbjct: 64  IPCYTIMDQEGVVSKPDQDPNFSKEE---VIKMYTTMLTLNVMDSILYDVQRQGRISFYM 120

Query: 69  TTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
           T+ GEEAI+I SAAA++  D +  QYRE GV +WRGF++ +  NQC  N+ D GKGRQMP
Sbjct: 121 TSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMP 180

Query: 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188
           +H+GS K N  T+SS + TQLP AVG++YA K+  +  C + YFG+G  SEGDFHAA+NF
Sbjct: 181 MHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNF 240

Query: 189 SAVTEAPVIFICRNNGWAISTPISDQFR 216
           +A    P IF CRNN WAISTP  +Q++
Sbjct: 241 AAALSTPTIFFCRNNKWAISTPSKEQYK 268

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4

>sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2

 Score =  238 bits (608), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 1/205 (0%)

Query: 12  IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTS 71
           +P YRV +  G     S      E  ++KMY  M  L  MD I Y++QRQGRISFY+T+ 
Sbjct: 59  LPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQRQGRISFYMTSF 118

Query: 72  GEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHY 131
           GEE  ++ SAAA++  D +  QYRE GVLLWRG++M+ F NQC+GN  D GKGRQMP+H+
Sbjct: 119 GEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADDLGKGRQMPMHF 178

Query: 132 GSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSA 190
           G+ + N+ T+SS + TQLP AVG+AYA K  +  +  AV YFGDG  SEGD HAA NF+A
Sbjct: 179 GTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASEGDAHAAFNFAA 238

Query: 191 VTEAPVIFICRNNGWAISTPISDQF 215
             + P+IF CRNNG+AISTP S+Q+
Sbjct: 239 TLKCPIIFFCRNNGYAISTPTSEQY 263

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). Required for the production of the monomethyl branched-chain fatty acids (mmBCFAs) isopentadecanoate (C15iso) and isoheptadecanoate (C17iso).

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 4

>sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2

 Score =  226 bits (577), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 110/216 (50%), Positives = 144/216 (66%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 65  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE  ++ SAAA+ N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 280

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 4

>sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1

 Score =  226 bits (577), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 110/216 (50%), Positives = 144/216 (66%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 65  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE  ++ SAAA+ N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 280

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 4

>sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1

 Score =  226 bits (577), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 110/216 (50%), Positives = 144/216 (66%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 65  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE  ++ SAAA+ N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 280

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 4

>sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1

 Score =  224 bits (570), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/216 (50%), Positives = 144/216 (66%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 61  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQR 120

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE  ++ SAAA++  D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 121 QGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 180

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 181 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANQIVICYFGEGAASEG 240

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 241 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 276

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 4

>sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1

 Score =  223 bits (568), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 109/216 (50%), Positives = 143/216 (66%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K Y  M  L TMD I YE+QR
Sbjct: 75  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 134

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE  ++ SAAA+ + D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 135 QGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 194

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 195 LGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 254

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 255 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 290

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 4

>sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1

 Score =  221 bits (564), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/216 (50%), Positives = 143/216 (66%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K Y  M  L TMD I YE+QR
Sbjct: 62  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQR 121

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           +GRISFY+T  GEE  ++ SAAA++  D V  QYRE GVL++R + ++ F +QC+GN  D
Sbjct: 122 EGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVND 181

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 182 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRIVICYFGEGAASEG 241

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 242 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 277

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 4

>sp|Q72GU1|ODBA_THET2 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 4/204 (1%)

Query: 16  RVLDDDGQPFPDSSFVKVSEGVAIK-MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEE 74
           R++ ++G+   D  F    EG  ++ +Y DM+  + +D  +    R G+ SF    +G E
Sbjct: 17  RLIGEEGEWLGD--FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 74

Query: 75  AINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133
           A  +A A AI+   D+V P YR+ G+ L  G  ++E   Q    KAD  KGRQMP H GS
Sbjct: 75  AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELFGQMLATKADPNKGRQMPEHPGS 134

Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
              N+FTV+S IA+ +P A GAA ++K+ R    AV  FGDG TSEGD++A +NF+AV  
Sbjct: 135 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 194

Query: 194 APVIFICRNNGWAISTPISDQFRS 217
           AP +F+C NN +AIS     Q  S
Sbjct: 195 APAVFVCENNFYAISVDYRHQTHS 218

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 4

>sp|P37940|ODBA_BACSU 2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis (strain 168) GN=bfmBAA PE=1 SV=1

 Score =  146 bits (369), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 2/179 (1%)

Query: 38  AIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVVPQYRE 96
           A+ MY  M+  + +D   +   R G+I F ++  G+EA  + +A A+  + D+V+P YR+
Sbjct: 16  AVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVLPYYRD 75

Query: 97  PGVLLWRGFSMQEFANQCFGNKADYGKG-RQMPIHYGSNKHNYFTVSSTIATQLPHAVGA 155
            GV+L  G + ++     F   AD   G RQMP H+G  K+   T SS + TQ+PHAVG 
Sbjct: 76  MGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVPHAVGI 135

Query: 156 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 214
           A A +M++KD  A   FG+G +++GDFH   NF+AV + PVIF+C NN +AIS P   Q
Sbjct: 136 ALAGRMEKKDIAAFVTFGEGSSNQGDFHEGANFAAVHKLPVIFMCENNKYAISVPYDKQ 194

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
297811017	472	hypothetical protein ARALYDRAFT_350155 [	0.931	0.459	0.820	1e-105
18415939	472	2-oxoisovalerate dehydrogenase E1 compon	0.931	0.459	0.801	1e-103
42573319	401	2-oxoisovalerate dehydrogenase E1 compon	0.931	0.541	0.801	1e-103
9955517	414	branched-chain alpha keto-acid dehydroge	0.931	0.524	0.801	1e-103
255558474	380	2-oxoisovalerate dehydrogenase, putative	0.931	0.571	0.792	1e-103
413916414	392	hypothetical protein ZEAMMB73_816012 [Ze	0.931	0.553	0.801	1e-103
356508967	474	PREDICTED: 2-oxoisovalerate dehydrogenas	0.931	0.457	0.811	1e-103
413916415	346	hypothetical protein ZEAMMB73_816012 [Ze	0.948	0.638	0.791	1e-102
212275011	488	uncharacterized protein LOC100191513 [Ze	0.931	0.444	0.801	1e-102
255550510	450	2-oxoisovalerate dehydrogenase, putative	0.931	0.482	0.820	1e-102

>gi|297811017|ref|XP_002873392.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] gi|297319229|gb|EFH49651.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 197/217 (90%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           +RFISES  ER+PCYRVLDD+GQ   +S FV+VSE VA+K+Y+DMVTLQ MD IFYEAQR
Sbjct: 93  IRFISESDSERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQR 152

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGR+SFY T  GEEAINIASAAA+   D + PQYREPGVLLWRGF++QEFANQCFGNK+D
Sbjct: 153 QGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSD 212

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
           YGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVGAAY+LKMDRKDACAVTYFGDGGTSEG
Sbjct: 213 YGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDRKDACAVTYFGDGGTSEG 272

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           DFHAALNF+AV EAPVIFICRNNGWAISTP SDQFRS
Sbjct: 273 DFHAALNFAAVMEAPVIFICRNNGWAISTPTSDQFRS 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415939|ref|NP_568209.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana] gi|28393751|gb|AAO42286.1| putative branched-chain alpha keto-acid dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|28973423|gb|AAO64036.1| putative branched-chain alpha keto-acid dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|332003988|gb|AED91371.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/217 (80%), Positives = 197/217 (90%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           ++FISES +ER+PCYRVLDD+GQ   +S FV+VSE VA+K+Y+DMVTLQ MD IFYEAQR
Sbjct: 93  IQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQR 152

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGR+SFY T  GEEAINIASAAA+   D + PQYREPGVLLWRGF++QEFANQCFGNK+D
Sbjct: 153 QGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSD 212

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
           YGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVGAAY+LKMD+KDACAVTYFGDGGTSEG
Sbjct: 213 YGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDKKDACAVTYFGDGGTSEG 272

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           DFHAALN +AV EAPV+FICRNNGWAISTP SDQFRS
Sbjct: 273 DFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRS 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573319|ref|NP_974756.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana] gi|332003989|gb|AED91372.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/217 (80%), Positives = 197/217 (90%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           ++FISES +ER+PCYRVLDD+GQ   +S FV+VSE VA+K+Y+DMVTLQ MD IFYEAQR
Sbjct: 22  IQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQR 81

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGR+SFY T  GEEAINIASAAA+   D + PQYREPGVLLWRGF++QEFANQCFGNK+D
Sbjct: 82  QGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSD 141

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
           YGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVGAAY+LKMD+KDACAVTYFGDGGTSEG
Sbjct: 142 YGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDKKDACAVTYFGDGGTSEG 201

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           DFHAALN +AV EAPV+FICRNNGWAISTP SDQFRS
Sbjct: 202 DFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRS 238

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9955517|emb|CAC05456.1| branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like protein [Arabidopsis thaliana]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/217 (80%), Positives = 197/217 (90%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           ++FISES +ER+PCYRVLDD+GQ   +S FV+VSE VA+K+Y+DMVTLQ MD IFYEAQR
Sbjct: 35  IQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQR 94

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGR+SFY T  GEEAINIASAAA+   D + PQYREPGVLLWRGF++QEFANQCFGNK+D
Sbjct: 95  QGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSD 154

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
           YGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVGAAY+LKMD+KDACAVTYFGDGGTSEG
Sbjct: 155 YGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDKKDACAVTYFGDGGTSEG 214

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           DFHAALN +AV EAPV+FICRNNGWAISTP SDQFRS
Sbjct: 215 DFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRS 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558474|ref|XP_002520262.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] gi|223540481|gb|EEF42048.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 172/217 (79%), Positives = 198/217 (91%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           M+FIS SS++R+PCYR+LD++G    +S F +VS+ +A+KMYN+MVTLQ MDTIFYEAQR
Sbjct: 1   MKFISGSSQKRVPCYRILDENGDLIENSDFDEVSKEIAVKMYNEMVTLQMMDTIFYEAQR 60

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T+ GEE+INIASAAA+  DD V+PQYREPGVLLWRGF++QEFANQCFGNKAD
Sbjct: 61  QGRISFYVTSIGEESINIASAAALTKDDVVLPQYREPGVLLWRGFTLQEFANQCFGNKAD 120

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
           YG+GRQMPIHYGSNKHNYFTVSS IATQLP AVG AY+LKM++KDAC VTY GDGGTSEG
Sbjct: 121 YGRGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGVAYSLKMEKKDACVVTYIGDGGTSEG 180

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           DFHAALNF+AVTEAPVIFICRNNGWAIST IS+QFRS
Sbjct: 181 DFHAALNFAAVTEAPVIFICRNNGWAISTHISEQFRS 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413916414|gb|AFW56346.1| hypothetical protein ZEAMMB73_816012 [Zea mays]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/217 (80%), Positives = 195/217 (89%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           M F+ ES+ ERI CYRVLDDDG+    S F +VS  +A+KMY++MVTLQ MDTIFYEAQR
Sbjct: 109 MNFLPESTRERINCYRVLDDDGRTISGSRFQEVSRELALKMYSEMVTLQIMDTIFYEAQR 168

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFYLT++GEEAINIASAAA+  DD V+PQYREPGVLLWRGF++QEFANQCFGNK D
Sbjct: 169 QGRISFYLTSNGEEAINIASAAALSMDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLD 228

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
           YGKGRQMPIHYGSN+ NYFTVSS IATQLPHAVGAAY+LKMD+KDACA+TYFGDGGTSEG
Sbjct: 229 YGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEG 288

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           DFHAALNF+AV EAPVIF CRNNGWAISTP ++QFRS
Sbjct: 289 DFHAALNFAAVMEAPVIFFCRNNGWAISTPTTEQFRS 325

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508967|ref|XP_003523224.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/217 (81%), Positives = 195/217 (89%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           MRFISES +ERIPCYRVLDD+GQP    +FV+VS+ VA+KMY DMVTL++MDTIFYEAQR
Sbjct: 95  MRFISESPKERIPCYRVLDDNGQPILGHNFVQVSKEVAVKMYTDMVTLRSMDTIFYEAQR 154

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEEAIN+ASAAA+  DD V PQYRE GVLLWRGF++QEFANQ F N  D
Sbjct: 155 QGRISFYVTAIGEEAINVASAAALAMDDVVFPQYREAGVLLWRGFTLQEFANQLFSNIYD 214

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
           YGKGRQMP HYGS KHNYFTV+STIATQ+ HAVGAAY+LKMD+KDACAVTYFGDGG+SEG
Sbjct: 215 YGKGRQMPAHYGSKKHNYFTVASTIATQISHAVGAAYSLKMDKKDACAVTYFGDGGSSEG 274

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           DFHAALNF+AV EAPVIFICRNNGWAISTPISDQFRS
Sbjct: 275 DFHAALNFAAVLEAPVIFICRNNGWAISTPISDQFRS 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413916415|gb|AFW56347.1| hypothetical protein ZEAMMB73_816012 [Zea mays]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/221 (79%), Positives = 197/221 (89%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           M F+ ES+ ERI CYRVLDDDG+    S F +VS  +A+KMY++MVTLQ MDTIFYEAQR
Sbjct: 109 MNFLPESTRERINCYRVLDDDGRTISGSRFQEVSRELALKMYSEMVTLQIMDTIFYEAQR 168

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFYLT++GEEAINIASAAA+  DD V+PQYREPGVLLWRGF++QEFANQCFGNK D
Sbjct: 169 QGRISFYLTSNGEEAINIASAAALSMDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLD 228

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
           YGKGRQMPIHYGSN+ NYFTVSS IATQLPHAVGAAY+LKMD+KDACA+TYFGDGGTSEG
Sbjct: 229 YGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEG 288

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSL 221
           DFHAALNF+AV EAPVIF CRNNGWAISTP ++QFRS  S+
Sbjct: 289 DFHAALNFAAVMEAPVIFFCRNNGWAISTPTTEQFRSSNSV 329

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212275011|ref|NP_001130417.1| uncharacterized protein LOC100191513 [Zea mays] gi|194689064|gb|ACF78616.1| unknown [Zea mays] gi|194690354|gb|ACF79261.1| unknown [Zea mays] gi|194690522|gb|ACF79345.1| unknown [Zea mays] gi|194703080|gb|ACF85624.1| unknown [Zea mays] gi|413916413|gb|AFW56345.1| hypothetical protein ZEAMMB73_816012 [Zea mays]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/217 (80%), Positives = 195/217 (89%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           M F+ ES+ ERI CYRVLDDDG+    S F +VS  +A+KMY++MVTLQ MDTIFYEAQR
Sbjct: 109 MNFLPESTRERINCYRVLDDDGRTISGSRFQEVSRELALKMYSEMVTLQIMDTIFYEAQR 168

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFYLT++GEEAINIASAAA+  DD V+PQYREPGVLLWRGF++QEFANQCFGNK D
Sbjct: 169 QGRISFYLTSNGEEAINIASAAALSMDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLD 228

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
           YGKGRQMPIHYGSN+ NYFTVSS IATQLPHAVGAAY+LKMD+KDACA+TYFGDGGTSEG
Sbjct: 229 YGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEG 288

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           DFHAALNF+AV EAPVIF CRNNGWAISTP ++QFRS
Sbjct: 289 DFHAALNFAAVMEAPVIFFCRNNGWAISTPTTEQFRS 325

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550510|ref|XP_002516305.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] gi|223544535|gb|EEF46052.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 190/217 (87%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           MRFISES EERIPCYRVLDD+GQ   D   V VS  +A KMY DMVTLQTMDTIFYEAQR
Sbjct: 71  MRFISESPEERIPCYRVLDDNGQLIEDGDNVGVSRHIARKMYCDMVTLQTMDTIFYEAQR 130

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEEAINIASAAA+  DD VVPQYREPGVLLWRGFS+QEFANQCF NK D
Sbjct: 131 QGRISFYVTAIGEEAINIASAAALTIDDLVVPQYREPGVLLWRGFSLQEFANQCFSNKGD 190

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
             KGRQMP HYGS KHNYFTV+STIA+QLPHAVGAAY+LKMD +DAC V YFGDGG+SEG
Sbjct: 191 NCKGRQMPAHYGSKKHNYFTVASTIASQLPHAVGAAYSLKMDGRDACVVAYFGDGGSSEG 250

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           DFHAALNF+AV EAPVIFICRNNGWAISTP+SDQFRS
Sbjct: 251 DFHAALNFAAVMEAPVIFICRNNGWAISTPVSDQFRS 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2184702	472	AT5G09300 "AT5G09300" [Arabido	0.931	0.459	0.760	3.1e-90
TAIR|locus:2027072	472	AT1G21400 "AT1G21400" [Arabido	0.931	0.459	0.728	9.9e-87
FB|FBgn0037709	439	CG8199 [Drosophila melanogaste	0.879	0.466	0.519	1.6e-56
DICTYBASE|DDB_G0286335	441	bkdA "branched-chain alpha-ket	0.866	0.458	0.514	2.3e-55
WB|WBGene00012713	432	Y39E4A.3 [Caenorhabditis elega	0.922	0.497	0.486	2.9e-55
UNIPROTKB|B4DP47	448	BCKDHA "2-oxoisovalerate dehyd	0.927	0.482	0.490	1.6e-54
UNIPROTKB|F5H5P2	479	BCKDHA "Uncharacterized protei	0.927	0.450	0.490	1.6e-54
UNIPROTKB|P12694	445	BCKDHA "2-oxoisovalerate dehyd	0.927	0.485	0.490	1.6e-54
ZFIN|ZDB-GENE-050522-376	446	bckdha "branched chain keto ac	0.927	0.484	0.495	1.6e-54
UNIPROTKB|E2RPW4	530	B3GNT8 "Uncharacterized protei	0.927	0.407	0.490	4.3e-54

TAIR|locus:2184702 AT5G09300 "AT5G09300" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 165/217 (76%), Positives = 187/217 (86%)

Query:     1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
             ++FISES +ER+PCYRVLDD+GQ   +S FV+VSE VA+K+Y+DMVTLQ MD IFYEAQR
Sbjct:    93 IQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQR 152

Query:    61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
             QGR+SFY T  GEE             D + PQYREPGVLLWRGF++QEFANQCFGNK+D
Sbjct:   153 QGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSD 212

Query:   121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
             YGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVGAAY+LKMD+KDACAVTYFGDGGTSEG
Sbjct:   213 YGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDKKDACAVTYFGDGGTSEG 272

Query:   181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
             DFHAALN +AV EAPV+FICRNNGWAISTP SDQFRS
Sbjct:   273 DFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRS 309

GO:0003863 "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

TAIR|locus:2027072 AT1G21400 "AT1G21400" [Arabidopsis thaliana (taxid:3702)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 158/217 (72%), Positives = 179/217 (82%)

Query:     1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
             M+FI ESS  RIPCYRVLD+DG+  PDS F+ VSE +A++MY  M TLQ MD IFYEAQR
Sbjct:    93 MKFIPESSSRRIPCYRVLDEDGRIIPDSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQR 152

Query:    61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
             QGRISFYLT+ GEE            DD V+PQYREPGVLLWRGF+++EFANQCFGNKAD
Sbjct:   153 QGRISFYLTSVGEEAINIASAAALSPDDVVLPQYREPGVLLWRGFTLEEFANQCFGNKAD 212

Query:   121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
             YGKGRQMPIHYGSN+ NYFT+SS IATQLP A G  Y+LKMD+K+AC VT+ GDGGTSEG
Sbjct:   213 YGKGRQMPIHYGSNRLNYFTISSPIATQLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEG 272

Query:   181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
             DFHA LNF+AV EAPV+FICRNNGWAIST IS+QFRS
Sbjct:   273 DFHAGLNFAAVMEAPVVFICRNNGWAISTHISEQFRS 309

GO:0003863 "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

FB|FBgn0037709 CG8199 [Drosophila melanogaster (taxid:7227)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 107/206 (51%), Positives = 139/206 (67%)

Query:    12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTS 71
             IP YRV+D DG    ++   ++   V  KM+ DMV L TMD I YE+QRQGRISFY+T  
Sbjct:    68 IPIYRVMDQDGYIADETQDPQLGREVVEKMFRDMVLLNTMDKILYESQRQGRISFYMTNF 127

Query:    72 GEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHY 131
             GEE          +  D +  QYRE GVL+WRGF + +F +QC+GN  D G+G+QMP+HY
Sbjct:   128 GEEASHIGSAAALEMRDLIYGQYREAGVLVWRGFRIDQFIDQCYGNTDDLGRGKQMPVHY 187

Query:   132 GSNKHNYFTVSSTIATQLPHAVGAAYALKM-DRKDACAVTYFGDGGTSEGDFHAALNFSA 190
             GS + N+ T+SS ++TQ+P AVGAAYA+K+    DAC V YFG+G  SEGD HAA NF+A
Sbjct:   188 GSRELNFVTISSPLSTQMPQAVGAAYAMKLRPNNDACVVCYFGEGAASEGDAHAAFNFAA 247

Query:   191 VTEAPVIFICRNNGWAISTPISDQFR 216
                 P I  CRNNG+AISTP  +Q++
Sbjct:   248 TLGCPAILFCRNNGFAISTPSHEQYK 273

GO:0017086 "3-methyl-2-oxobutanoate dehydrogenase (lipoamide) complex" evidence=ISS

GO:0003863 "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity" evidence=ISS

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=ISS

DICTYBASE|DDB_G0286335 bkdA "branched-chain alpha-keto acid dehydrogenase E1 alpha chain" [Dictyostelium discoideum (taxid:44689)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 107/208 (51%), Positives = 139/208 (66%)

Query:    12 IPCYRVLDDDG---QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
             IPCY ++D +G   +P  D +F K  E V IKMY  M+TL  MD+I Y+ QRQGRISFY+
Sbjct:    64 IPCYTIMDQEGVVSKPDQDPNFSK--EEV-IKMYTTMLTLNVMDSILYDVQRQGRISFYM 120

Query:    69 TTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
             T+ GEE          +  D +  QYRE GV +WRGF++ +  NQC  N+ D GKGRQMP
Sbjct:   121 TSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMP 180

Query:   129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188
             +H+GS K N  T+SS + TQLP AVG++YA K+  +  C + YFG+G  SEGDFHAA+NF
Sbjct:   181 MHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNF 240

Query:   189 SAVTEAPVIFICRNNGWAISTPISDQFR 216
             +A    P IF CRNN WAISTP  +Q++
Sbjct:   241 AAALSTPTIFFCRNNKWAISTPSKEQYK 268

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003863 "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity" evidence=IEA;ISS

GO:0017086 "3-methyl-2-oxobutanoate dehydrogenase (lipoamide) complex" evidence=IC

GO:0009083 "branched-chain amino acid catabolic process" evidence=IC

GO:0003826 "alpha-ketoacid dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00012713 Y39E4A.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 105/216 (48%), Positives = 138/216 (63%)

Query:     1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
             +  ++      +P YRV +  G     S      E  ++KMY  M  L  MD I Y++QR
Sbjct:    49 LEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQR 108

Query:    61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
             QGRISFY+T+ GEE          +  D +  QYRE GVLLWRG++M+ F NQC+GN  D
Sbjct:   109 QGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADD 168

Query:   121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-KDACAVTYFGDGGTSE 179
              GKGRQMP+H+G+ + N+ T+SS + TQLP AVG+AYA K  +  +  AV YFGDG  SE
Sbjct:   169 LGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASE 228

Query:   180 GDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF 215
             GD HAA NF+A  + P+IF CRNNG+AISTP S+Q+
Sbjct:   229 GDAHAAFNFAATLKCPIIFFCRNNGYAISTPTSEQY 264

GO:0008152 "metabolic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

UNIPROTKB|B4DP47 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 106/216 (49%), Positives = 137/216 (63%)

Query:     1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
             + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct:    43 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 102

Query:    61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
             QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct:   103 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 162

Query:   121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
              GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct:   163 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 222

Query:   181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
             D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct:   223 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 258

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

UNIPROTKB|F5H5P2 BCKDHA "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 106/216 (49%), Positives = 137/216 (63%)

Query:     1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
             + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct:    99 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 158

Query:    61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
             QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct:   159 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 218

Query:   121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
              GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct:   219 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 278

Query:   181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
             D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct:   279 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 314

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

UNIPROTKB|P12694 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 106/216 (49%), Positives = 137/216 (63%)

Query:     1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
             + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct:    65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124

Query:    61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
             QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct:   125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184

Query:   121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
              GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct:   185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244

Query:   181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
             D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct:   245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 280

GO:0046872 "metal ion binding" evidence=IEA

GO:0003863 "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity" evidence=IEA

GO:0005947 "mitochondrial alpha-ketoglutarate dehydrogenase complex" evidence=IDA

GO:0003826 "alpha-ketoacid dehydrogenase activity" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=IDA;TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=TAS

GO:0016831 "carboxy-lyase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-050522-376 bckdha "branched chain keto acid dehydrogenase E1, alpha polypeptide" [Danio rerio (taxid:7955)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 107/216 (49%), Positives = 135/216 (62%)

Query:     1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
             + FI  +    IP YRV+D  GQ    S   ++S+   +  Y  M  L TMD I YE+QR
Sbjct:    66 LEFIQPNVISGIPVYRVMDRQGQIINPSEDPQLSKETVLNFYQKMTLLNTMDRILYESQR 125

Query:    61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
             QGRISFY+T  GEE             D V  QYRE GVL++RGF +  F  QC+ N  D
Sbjct:   126 QGRISFYMTNYGEEGTHIGSAAALDPSDLVFGQYREAGVLMYRGFPLDLFMAQCYANADD 185

Query:   121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
              GKGRQMP+HYGS   N+ T+SS +ATQ+P A GAAYA+K +  +   + YFG+G  SEG
Sbjct:   186 LGKGRQMPVHYGSKDLNFVTISSPLATQIPQAAGAAYAVKRENANRVVICYFGEGAASEG 245

Query:   181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
             D HA  NFSA  E P+IF CRNNG+AISTP ++Q+R
Sbjct:   246 DAHAGFNFSATLECPLIFFCRNNGYAISTPTNEQYR 281

GO:0008152 "metabolic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

UNIPROTKB|E2RPW4 B3GNT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 106/216 (49%), Positives = 135/216 (62%)

Query:     1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
             + FI  +    IP YRV+D  GQ    S    + +   +K Y  M  L TMD I YE+QR
Sbjct:   150 LEFIQPNVISGIPVYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 209

Query:    61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
             QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct:   210 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 269

Query:   121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
              GKGRQMP+HYG    ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct:   270 PGKGRQMPVHYGCKDRHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 329

Query:   181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
             D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct:   330 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 365

GO:0005739 "mitochondrion" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009607 "response to biotic stimulus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.2.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pg.C_scaffold_6000748	annotation not avaliable (472 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_105341.1	annotation not avaliable (352 aa)	•	•	•	•	•	•	•		0.952
	fgenesh2_kg.3__1430__AT3G13450.1	annotation not avaliable (360 aa)	•	•	•	•	•	•	•		0.946
	fgenesh1_pm.C_scaffold_8000817	annotation not avaliable (366 aa)	•	•	•	•	•	•	•		0.873
	scaffold_300800.1	annotation not avaliable (484 aa)	•		•	•		•	•		0.872
	fgenesh2_kg.1__3184__AT1G30120.1	annotation not avaliable (406 aa)	•	•	•			•	•		0.773
	fgenesh2_kg.4__1482__AT2G34590.1	annotation not avaliable (409 aa)	•	•	•			•	•		0.768
	fgenesh2_kg.1__3892__AT1G48030.2	annotation not avaliable (505 aa)	•			•		•	•		0.666
	scaffold_302028.1	annotation not avaliable (507 aa)	•			•		•	•		0.657
	scaffold_304435.1	annotation not avaliable (374 aa)	•								0.528
	scaffold_501390.1	annotation not avaliable (409 aa)	•			•		•	•		0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
cd02000	293	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph	1e-89
COG1071	358	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena	5e-73
TIGR03181	341	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E	7e-69
pfam00676	303	pfam00676, E1_dh, Dehydrogenase E1 component	3e-60
TIGR03182	315	TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E	7e-35
PLN02374	433	PLN02374, PLN02374, pyruvate dehydrogenase (acetyl	4e-21
CHL00149	341	CHL00149, odpA, pyruvate dehydrogenase E1 componen	2e-20
PLN02269	362	PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp	2e-18
cd00568	168	cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP)	1e-04
cd02007	195	cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam	0.002

>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

 Score =  265 bits (680), Expect = 1e-89
 Identities = 78/178 (43%), Positives = 108/178 (60%), Gaps = 1/178 (0%)

Query: 41  MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGV 99
           +Y  MV ++  D    E  RQG+I  FY  + G+EA+ +  AAA++  D+V P YR+ G 
Sbjct: 1   LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60

Query: 100 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYAL 159
            L RG  ++E   + FG +    KGR   +H G  + N+F  +  +  Q+P A GAA AL
Sbjct: 61  ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120

Query: 160 KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           K   +D  AV +FGDG T+EGDFH ALNF+A+ + PVIF+C NNG+AISTP S Q   
Sbjct: 121 KYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAG 178

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293

>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

 Score =  225 bits (576), Expect = 5e-73
 Identities = 80/205 (39%), Positives = 118/205 (57%), Gaps = 5/205 (2%)

Query: 15  YRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTS 71
            RVLD+DG+   +       +S+   +++Y  M+ ++  D    + QRQG+I  FY    
Sbjct: 4   IRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYI 63

Query: 72  GEEAINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIH 130
           G+EA+ + +AAA++   D++ P YR+ G LL RG  ++E   +  G      KGR   +H
Sbjct: 64  GQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMH 123

Query: 131 YGSNKHNYFTVSSTIATQLPHAVGAAYALKM-DRKDACAVTYFGDGGTSEGDFHAALNFS 189
           Y   +  +   S  + TQ+P A GAA ALK    KD  AV +FGDG T++GDFH ALNF+
Sbjct: 124 YSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFA 183

Query: 190 AVTEAPVIFICRNNGWAISTPISDQ 214
           AV + PV+F+  NN +AIS P S Q
Sbjct: 184 AVWKLPVVFVIENNQYAISVPRSRQ 208

Length = 358

>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit

 Score =  214 bits (547), Expect = 7e-69
 Identities = 84/208 (40%), Positives = 114/208 (54%), Gaps = 15/208 (7%)

Query: 13  PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEA---QRQGRISFYLT 69
              +VLD+DG          +S+   +++Y DMV  +  DT   +A   QRQGR+  Y  
Sbjct: 1   ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDT---KALALQRQGRLGTYAP 57

Query: 70  TSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPI 129
             G+EA  + SA A++ DD+V P YR+   +L RG  + E      G++    +G   P 
Sbjct: 58  NLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDE----RGSWDP- 112

Query: 130 HYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189
                  N    +  I TQ  HA G AYALK+  +D  AVTYFGDGGTSEGDF+ ALNF+
Sbjct: 113 ----EGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFA 168

Query: 190 AVTEAPVIFICRNNGWAISTPISDQFRS 217
            V +APV+F  +NN WAIS P S Q  +
Sbjct: 169 GVFKAPVVFFVQNNQWAISVPRSKQTAA 196

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341

>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component

 Score =  191 bits (487), Expect = 3e-60
 Identities = 65/181 (35%), Positives = 98/181 (54%), Gaps = 4/181 (2%)

Query: 44  DMVTL-QTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLW 102
            M+TL +  D      QR+G   F    +G+EA+ +  AAA+   D+V+P YR+ G LL 
Sbjct: 2   RMMTLRRMEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLLA 61

Query: 103 RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160
           RG S+++   +  GN+     GKG  M  +Y    + ++  +  +  Q+P   G A A K
Sbjct: 62  RGVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAAK 121

Query: 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPS 220
              K   A+T FGDG T++G F  ALNF+A+ + PVIF+C NN +AISTP      +  +
Sbjct: 122 YRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAERS-SASTT 180

Query: 221 L 221
            
Sbjct: 181 Y 181

This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303

>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit

 Score =  126 bits (318), Expect = 7e-35
 Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 1/176 (0%)

Query: 38  AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
            +++Y DM+ ++  +    +    G+I  F     G+EA+ +   AA+K DD+V+  YR+
Sbjct: 4   LLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRD 63

Query: 97  PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
            G  L RG   +E   +  G +    KG+   +H    + N++     +  Q+P A G A
Sbjct: 64  HGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLA 123

Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212
           +A K    D     +FGDG  ++G F+ + N +A+ + PVIF+  NN +A+ T + 
Sbjct: 124 FANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTAVE 179

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315

>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring)

 Score = 90.4 bits (224), Expect = 4e-21
 Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 14/197 (7%)

Query: 22  GQPFPDSSFVKVSEGVAIKMYNDMVTLQTMD----TIFYEAQRQGRISFYLTTSGEEAIN 77
                 +S + V+    +++Y DMV  ++ +     ++Y  +  G +  Y   +G+EA++
Sbjct: 72  KNSKASASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLY---NGQEAVS 128

Query: 78  IASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN 137
                 +K DD VV  YR+    L +G   +   ++ FG      +G+   +H  S +HN
Sbjct: 129 TGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN 188

Query: 138 YFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEGDFHAALNFSA 190
                + I   +P A GAA++ K  R+       D   + +FGDG  + G F   LN +A
Sbjct: 189 LLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAA 248

Query: 191 VTEAPVIFICRNNGWAI 207
           + + P++F+  NN WAI
Sbjct: 249 LWKLPIVFVVENNLWAI 265

Length = 433

>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed

 Score = 88.0 bits (218), Expect = 2e-20
 Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 16/196 (8%)

Query: 24  PFPDSSFVKVSEGVAIKMYNDMVTLQTMD----TIFYEAQRQGRISFYLTTSGEEAINIA 79
           P  +S+   ++    + +Y DM+  +  +     ++Y  +  G +  Y   +G+EA++  
Sbjct: 8   PLTNSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLY---NGQEAVSTG 64

Query: 80  SAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF 139
               +   D+V   YR+    L +G   +    + FG +    +GR   +H  S  HN+ 
Sbjct: 65  VIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFL 124

Query: 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVT--------YFGDGGTSEGDFHAALNFSAV 191
              + I   +P A+GAA+   + R+              +FGDG T+ G F   LN + +
Sbjct: 125 GGFAFIGEGIPIALGAAFQ-SIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVL 183

Query: 192 TEAPVIFICRNNGWAI 207
            + P+IF+  NN WAI
Sbjct: 184 WKLPIIFVVENNQWAI 199

Length = 341

>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha

 Score = 82.5 bits (204), Expect = 2e-18
 Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 7/188 (3%)

Query: 26  PDSSFVKVSEGVAIKMYNDMVTLQTMDT---IFYEAQR-QGRISFYLTTSGEEAINIASA 81
           P S  V+ S+   +  + DM  ++ M+      Y+A+  +G    Y    G+EA+ +   
Sbjct: 20  PPSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGME 76

Query: 82  AAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV 141
           AAI  +D ++  YR+    L RG ++ E   +  G K    +G+   +H+     N++  
Sbjct: 77  AAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGG 136

Query: 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201
              +  Q+P   G A+A K ++++  A   +GDG  ++G    ALN +A+ + PVIF+C 
Sbjct: 137 HGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCE 196

Query: 202 NNGWAIST 209
           NN + + T
Sbjct: 197 NNHYGMGT 204

Length = 362

>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN--FSAVTE 193
               T    +   LP A+GAA A      D   V   GDGG     F        +AV  
Sbjct: 39  FLTSTGFGAMGYGLPAAIGAALA----APDRPVVCIAGDGG-----FMMTGQELATAVRY 89

Query: 194 -APVIFICRNNG 204
             PVI +  NNG
Sbjct: 90  GLPVIVVVFNNG 101

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168

>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA 194
           +++ F    + +T +  A+G A A  +  K    +   GDG  + G    ALN +   ++
Sbjct: 68  EYDAFGTGHS-STSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKS 126

Query: 195 PVIFICRNNGWAISTPI 211
            +I I  +N  +IS  +
Sbjct: 127 NMIVILNDNEMSISPNV 143

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
COG1071	358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PLN02269	362	Pyruvate dehydrogenase E1 component subunit alpha	100.0
KOG1182	432	consensus Branched chain alpha-keto acid dehydroge	100.0
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	100.0
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	100.0
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	100.0
KOG0225	394	consensus Pyruvate dehydrogenase E1, alpha subunit	100.0
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	100.0
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	100.0
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	100.0
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
cd02016	265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	100.0
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.97
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	99.93
COG3959	243	Transketolase, N-terminal subunit [Carbohydrate tr	99.89
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	99.84
PRK12754	663	transketolase; Reviewed	99.84
cd02011	227	TPP_PK Thiamine pyrophosphate (TPP) family, Phosph	99.82
PRK12753	663	transketolase; Reviewed	99.82
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	99.81
PLN02790	654	transketolase	99.81
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	99.81
PTZ00089	661	transketolase; Provisional	99.8
cd02017	386	TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam	99.78
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.78
cd02012	255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	99.77
PF00456	332	Transketolase_N: Transketolase, thiamine diphospha	99.75
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	99.75
PRK05899	624	transketolase; Reviewed	99.72
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	99.7
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.68
TIGR00759	885	aceE pyruvate dehydrogenase E1 component, homodime	99.66
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	99.66
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	99.66
KOG0523	632	consensus Transketolase [Carbohydrate transport an	99.65
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	99.57
PF13292	270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	99.52
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	99.51
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	99.49
COG0021	663	TktA Transketolase [Carbohydrate transport and met	99.46
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	99.44
PRK05261	785	putative phosphoketolase; Provisional	99.28
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	99.16
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.01
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	98.97
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	98.77
PRK07092	530	benzoylformate decarboxylase; Reviewed	98.7
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	98.68
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	98.68
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	98.67
cd02005	183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	98.65
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	98.61
cd02006	202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	98.52
PRK08327	569	acetolactate synthase catalytic subunit; Validated	98.5
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	98.49
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	98.47
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	98.46
PRK08155	564	acetolactate synthase catalytic subunit; Validated	98.45
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	98.42
PRK07524	535	hypothetical protein; Provisional	98.41
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	98.4
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	98.38
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	98.37
cd03371	188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	98.37
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	98.36
PRK08199	557	thiamine pyrophosphate protein; Validated	98.34
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	98.31
PRK06163	202	hypothetical protein; Provisional	98.31
PRK08266	542	hypothetical protein; Provisional	98.29
PRK07586	514	hypothetical protein; Validated	98.28
PRK07064	544	hypothetical protein; Provisional	98.28
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	98.27
PRK12474	518	hypothetical protein; Provisional	98.27
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	98.26
PRK11269	591	glyoxylate carboligase; Provisional	98.25
PRK06546	578	pyruvate dehydrogenase; Provisional	98.23
PRK06154	565	hypothetical protein; Provisional	98.21
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	98.21
PRK09124	574	pyruvate dehydrogenase; Provisional	98.2
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	98.19
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	98.17
PRK06112	578	acetolactate synthase catalytic subunit; Validated	98.16
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	98.16
COG3961	557	Pyruvate decarboxylase and related thiamine pyroph	98.16
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	98.16
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	98.15
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	98.14
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	98.14
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	98.14
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	98.12
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	98.12
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	98.11
PLN02573	578	pyruvate decarboxylase	98.11
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	98.1
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	98.09
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	98.08
PLN02470	585	acetolactate synthase	98.07
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	98.07
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	98.07
PRK08617	552	acetolactate synthase; Reviewed	98.06
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	98.04
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	98.04
COG2609	887	AceE Pyruvate dehydrogenase complex, dehydrogenase	98.04
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	98.04
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	98.03
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	98.02
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	98.02
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	98.01
PRK08611	576	pyruvate oxidase; Provisional	98.01
PRK05858	542	hypothetical protein; Provisional	98.0
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	97.99
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	97.99
PRK06457	549	pyruvate dehydrogenase; Provisional	97.98
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	97.98
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	97.97
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	97.96
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	97.96
PRK08322	547	acetolactate synthase; Reviewed	97.95
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	97.89
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	97.88
PRK05778	301	2-oxoglutarate ferredoxin oxidoreductase subunit b	97.86
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	97.86
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	97.85
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	97.85
PRK08273	597	thiamine pyrophosphate protein; Provisional	97.84
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	97.81
KOG1184	561	consensus Thiamine pyrophosphate-requiring enzyme	97.77
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	97.07
KOG1185	571	consensus Thiamine pyrophosphate-requiring enzyme	97.07
KOG0451	913	consensus Predicted 2-oxoglutarate dehydrogenase,	96.53
PF09364	379	XFP_N: XFP N-terminal domain; InterPro: IPR018970	96.3
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	95.58
COG1013	294	PorB Pyruvate:ferredoxin oxidoreductase and relate	95.43
COG3960	592	Glyoxylate carboligase [General function predictio	93.0
COG3957	793	Phosphoketolase [Carbohydrate transport and metabo	92.83
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	91.78
KOG4166	675	consensus Thiamine pyrophosphate-requiring enzyme	91.55
COG1165	566	MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car	91.51
cd03377	365	TPP_PFOR_PNO Thiamine pyrophosphate (TPP family),	89.44
KOG0450	1017	consensus 2-oxoglutarate dehydrogenase, E1 subunit	87.0
COG3962	617	Acetolactate synthase [Amino acid transport and me	83.91
cd06586	154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	80.47

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=1.6e-67  Score=483.61  Aligned_cols=220  Identities=36%  Similarity=0.592  Sum_probs=209.3

Q ss_pred             CeeEEeCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc-ccccCcchHHHHHHHHhccCCC-C
Q 026778           13 PCYRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-D   88 (233)
Q Consensus        13 ~~~~vl~~~g~~~~~~~~~--~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~-~~~~~~GqEa~~vg~~~aL~~~-D   88 (233)
                      +.+++++++|+.+.+....  .+++++|+++||+|+++|.||+++.+++|+|+++ |+|++.||||++||++++|+++ |
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D   81 (358)
T COG1071           2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED   81 (358)
T ss_pred             CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence            6789999999998875444  6899999999999999999999999999999996 9999999999999999999966 9


Q ss_pred             eEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCC-e
Q 026778           89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C  167 (233)
Q Consensus        89 ~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~-v  167 (233)
                      |++|+||+|+++|++|+|+.++|++++|+++|+|+||+||+|++++++|+++.+++||+|+|+|+|+|+|.|+++++. |
T Consensus        82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V  161 (358)
T COG1071          82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV  161 (358)
T ss_pred             EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999555 9


Q ss_pred             EEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       168 vv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      ++||+|||++|||+|||+||||++|+|||||+||||+|+||+|.+.|+..+.++.|-.  ++|+++|
T Consensus       162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~V  228 (358)
T COG1071         162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRV  228 (358)
T ss_pred             EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEE
Confidence            9999999999999999999999999999999999999999999999998888886666  8899876

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha

Probab=100.00  E-value=9.6e-60  Score=435.63  Aligned_cols=202  Identities=24%  Similarity=0.430  Sum_probs=196.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHHH
Q 026778           31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQE  109 (233)
Q Consensus        31 ~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~~  109 (233)
                      +.+++|+++++||.|+++|.||+++.+++++|++ +|+|++.||||++||++++|+++||+||+||+|+++|+||+|+.+
T Consensus        25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~  104 (362)
T PLN02269         25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE  104 (362)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence            4689999999999999999999999999999999 699999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHH
Q 026778          110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS  189 (233)
Q Consensus       110 ~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A  189 (233)
                      +|+|+||+++|+|+||+||||+++++.|+++.+++||+++|+|+|+|+|.|+++++.+++|++|||+++||.||||||+|
T Consensus       105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A  184 (362)
T PLN02269        105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA  184 (362)
T ss_pred             HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778          190 AVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL  232 (233)
Q Consensus       190 ~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~  232 (233)
                      +.|+||+||||+||+|+||||.+.++..+.++.+-.++|.++|
T Consensus       185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~V  227 (362)
T PLN02269        185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKV  227 (362)
T ss_pred             hccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEE
Confidence            9999999999999999999999999999999888788888775

>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=6.2e-60  Score=422.58  Aligned_cols=232  Identities=61%  Similarity=1.002  Sum_probs=223.6

Q ss_pred             CccccCCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHH
Q 026778            1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS   80 (233)
Q Consensus         1 ~~~~~~~~~~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~   80 (233)
                      |+||++++++.+|.|||+|+||++.++.+.+.+++|..++||+.|+++..+|..+++.||||+|.||.++.|+||+.+|.
T Consensus        51 l~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higS  130 (432)
T KOG1182|consen   51 LEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGS  130 (432)
T ss_pred             eeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhh
Confidence            68999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhh
Q 026778           81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK  160 (233)
Q Consensus        81 ~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k  160 (233)
                      ++||.|.|.|++.||+-|++|+||.++++++.|+||+..+..+||+||+|+++++.||++.++||.+|+|.|+|.|+|.|
T Consensus       131 AAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k  210 (432)
T KOG1182|consen  131 AAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALK  210 (432)
T ss_pred             hhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCC-CeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhh--hcccccccc
Q 026778          161 MDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPC--LSNILTILL  232 (233)
Q Consensus       161 ~~~~~-~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~--~~~~~~~~~  232 (233)
                      +++++ .++||+||||+++||+||.|+|||++...|+||+|.||+|+||||+++|+.+++|+.|  -++|-+|+|
T Consensus       211 ~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRV  285 (432)
T KOG1182|consen  211 MRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRV  285 (432)
T ss_pred             hcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEe
Confidence            87766 8999999999999999999999999999999999999999999999999999999765  456666665

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=100.00  E-value=4.6e-56  Score=408.44  Aligned_cols=203  Identities=23%  Similarity=0.385  Sum_probs=192.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHH
Q 026778           30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ  108 (233)
Q Consensus        30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~  108 (233)
                      .+.+|+|+++++||.|+++|.||+++.++++||++ +|+|++.||||++||++.+|+++||+||+||+|+++|+||+|+.
T Consensus        14 ~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~   93 (341)
T CHL00149         14 ENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPK   93 (341)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHH
Confidence            45789999999999999999999999999999999 69999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcC-------CCCeEEEEEcCCccchhh
Q 026778          109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD  181 (233)
Q Consensus       109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~-------~~~vvv~~~GDG~~~~G~  181 (233)
                      ++|+|+||+++|+|+||+||+|+++++.++++.++++|.++|+|+|+|+|.|+++       ++++|+|++|||++++|+
T Consensus        94 ~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~  173 (341)
T CHL00149         94 NVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQ  173 (341)
T ss_pred             HHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcH
Confidence            9999999999999999999999999999999999999999999999999999987       489999999999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       182 ~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      |||+||+|+.|+||+||||+||+|+||++.+.++...+++++.+  ++|+++|
T Consensus       174 ~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V  226 (341)
T CHL00149        174 FFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV  226 (341)
T ss_pred             HHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE
Confidence            99999999999999999999999999999999988888876665  4566554

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=100.00  E-value=2.9e-55  Score=399.09  Aligned_cols=198  Identities=26%  Similarity=0.438  Sum_probs=188.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHHHHHHH
Q 026778           35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQ  113 (233)
Q Consensus        35 ~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e  113 (233)
                      +|+|+++||+|+++|.||+++.+++|||++ +|+|++.||||++||++.+|+++||+||+||+|+++|+||+|+.++|+|
T Consensus         1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~   80 (315)
T TIGR03182         1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE   80 (315)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence            478999999999999999999999999999 5899999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcC
Q 026778          114 CFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE  193 (233)
Q Consensus       114 ~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~  193 (233)
                      ++|+++|+|+||+||+|+++++.|+++.++++|.++|.|+|+|+|.|+++++++++|++|||++++|.|||+||+|+.|+
T Consensus        81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~  160 (315)
T TIGR03182        81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK  160 (315)
T ss_pred             HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          194 APVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       194 lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      +|+||||+||+|+++++.+.++...+++.+-+  ++|.++|
T Consensus       161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~V  201 (315)
T TIGR03182       161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERV  201 (315)
T ss_pred             cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEE
Confidence            99999999999999999998888888765544  5666654

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=100.00  E-value=3.1e-54  Score=406.51  Aligned_cols=203  Identities=25%  Similarity=0.415  Sum_probs=192.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHH
Q 026778           30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ  108 (233)
Q Consensus        30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~  108 (233)
                      .+.+++|+++++||+|+++|.||+++.+++++|++ +++|++.||||++||++++|+++||+|++||+|+++|+||+|++
T Consensus        80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~  159 (433)
T PLN02374         80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR  159 (433)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHH
Confidence            45789999999999999999999999999999999 79999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcC-------CCCeEEEEEcCCccchhh
Q 026778          109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD  181 (233)
Q Consensus       109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~-------~~~vvv~~~GDG~~~~G~  181 (233)
                      ++|+|++|+++|+|+||+|++|++++++|+.+.++++|.++|+|+|+|+|.|+++       .+++++|++|||++++|+
T Consensus       160 ~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~  239 (433)
T PLN02374        160 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQ  239 (433)
T ss_pred             HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccCh
Confidence            9999999999999999999999999999999999999999999999999999986       488999999999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       182 ~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      |||+||+|+.|+||+||||+||+|+||++...++...+++.+..  ++|.++|
T Consensus       240 f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V  292 (433)
T PLN02374        240 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV  292 (433)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE
Confidence            99999999999999999999999999999999987777766554  4666654

>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=3.8e-53  Score=380.93  Aligned_cols=202  Identities=27%  Similarity=0.471  Sum_probs=195.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCH
Q 026778           29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM  107 (233)
Q Consensus        29 ~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~  107 (233)
                      ....+|+|+++++||+|+++|+||..+-+++++++| ||+|.+.||||++||+-++|++.|.++++||+|++.+.||+++
T Consensus        52 ~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~  131 (394)
T KOG0225|consen   52 TSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSV  131 (394)
T ss_pred             ceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccH
Confidence            345789999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHH
Q 026778          108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN  187 (233)
Q Consensus       108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn  187 (233)
                      .++|+|++|+.+|+|+|++||||+..++  |++.+|+||.|+|+++|+|+|.|+++++.|++++.|||+.|||++|||+|
T Consensus       132 ~~v~aEL~Gr~~Gc~kGKGGSMHmy~k~--FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~N  209 (394)
T KOG0225|consen  132 REVLAELMGRQAGCSKGKGGSMHMYAKN--FYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFN  209 (394)
T ss_pred             HHHHHHHhccccccccCCCcceeeeccc--ccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhh
Confidence            9999999999999999999999998866  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778          188 FSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL  232 (233)
Q Consensus       188 ~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~  232 (233)
                      +|+.|+||+|||||||.|++.|+.++.++...+-.|=.-+|+|.|
T Consensus       210 MA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~yiPGl~V  254 (394)
T KOG0225|consen  210 MAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGDYIPGLKV  254 (394)
T ss_pred             HHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccCCCCceEE
Confidence            999999999999999999999999999998888888788999876

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=100.00  E-value=4.9e-52  Score=381.64  Aligned_cols=211  Identities=39%  Similarity=0.573  Sum_probs=193.5

Q ss_pred             CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEec
Q 026778           13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVP   92 (233)
Q Consensus        13 ~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~~   92 (233)
                      |.||||+.+|...++...+.+|+|+++++||+|+++|.||+++.+++++|+++|+|++.||||++||++.+|+++||+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~   80 (341)
T TIGR03181         1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP   80 (341)
T ss_pred             CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence            67999999998766533467999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEE
Q 026778           93 QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYF  172 (233)
Q Consensus        93 ~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~  172 (233)
                      +||+|+++|+||+++.++|+|++|+.+|.+         .+++.|+++.++++|.++|.|+|+|+|.|+.+.+++|+|++
T Consensus        81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~  151 (341)
T TIGR03181        81 SYRDHAAMLARGVPLVEILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF  151 (341)
T ss_pred             chhhHHHHHHcCCCHHHHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence            999999999999999999999999986531         25789999999999999999999999999999999999999


Q ss_pred             cCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          173 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       173 GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      |||++++|.|||+||+|+.|+||+||||+||+|+++++...++...+++++.+  ++|+++|
T Consensus       152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V  213 (341)
T TIGR03181       152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQV  213 (341)
T ss_pred             cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEE
Confidence            99999999999999999999999999999999999999888887778866554  3565554

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=100.00  E-value=4.1e-52  Score=374.39  Aligned_cols=192  Identities=42%  Similarity=0.696  Sum_probs=182.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHhcCccc-ccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCC
Q 026778           41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA  119 (233)
Q Consensus        41 lyr~M~~~R~~d~~~~~l~r~G~i~-~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~  119 (233)
                      +||+|+++|.||+++.+++|||++. |+|++.||||++||++.+|+++||++|+||+|+++|+||+|+.++|+|++|+++
T Consensus         1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~   80 (293)
T cd02000           1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET   80 (293)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence            5999999999999999999999997 599999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEE
Q 026778          120 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI  199 (233)
Q Consensus       120 g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfv  199 (233)
                      |+++||+||+|+++++.|+++.++++|.++|.|+|+|+|.|+.+++++++|++|||++++|.|||+||+|+.+++|+|||
T Consensus        81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v  160 (293)
T cd02000          81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV  160 (293)
T ss_pred             CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          200 CRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       200 v~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      |+||+|+++++.+.+++..+++.+.+  ++|.++|
T Consensus       161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~V  195 (293)
T cd02000         161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRV  195 (293)
T ss_pred             EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEE
Confidence            99999999999988887777766555  4555443

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=100.00  E-value=8.5e-51  Score=367.71  Aligned_cols=190  Identities=40%  Similarity=0.621  Sum_probs=176.8

Q ss_pred             HHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCC
Q 026778           42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY  121 (233)
Q Consensus        42 yr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~  121 (233)
                      ||.|++.|..|+++..++++|+.+|+|++.||||++++++.+|+++||+||+||+|+++|++|+++.++|+|++|+..+.
T Consensus         1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~   80 (300)
T PF00676_consen    1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH   80 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred             CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence            67777777777778888889988999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEe
Q 026778          122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR  201 (233)
Q Consensus       122 ~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~  201 (233)
                      ++|+. ++|+.++++++++.++++|.++|+|+|+|+|.|+++++.|++|++|||+++||+||||||+|+.|+|||||||+
T Consensus        81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve  159 (300)
T PF00676_consen   81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE  159 (300)
T ss_dssp             TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence            88888 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccccccccccCCCchh--hhcccccccc
Q 026778          202 NNGWAISTPISDQFRSIPSLP--CLSNILTILL  232 (233)
Q Consensus       202 nN~~ais~~~~~q~~~~~~~~--~~~~~~~~~~  232 (233)
                      ||+|+||||.++|++.+.+++  +-.++|.+.|
T Consensus       160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~V  192 (300)
T PF00676_consen  160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRV  192 (300)
T ss_dssp             EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEE
T ss_pred             cCCcccccCccccccccchhhhhhccCCcEEEE
Confidence            999999999999999999876  5567777765

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=100.00  E-value=3.2e-35  Score=296.93  Aligned_cols=193  Identities=15%  Similarity=0.103  Sum_probs=169.0

Q ss_pred             CCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHh------ccCCCCeEec-CCccchhhhh--
Q 026778           32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW--  102 (233)
Q Consensus        32 ~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~------aL~~~D~~~~-~yR~~~~~l~--  102 (233)
                      .+|+|+++++|++|+++|.||+.+...+..++..   ++.|||++.+|+..      +++++|++++ +||+|++.|+  
T Consensus       185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v  261 (924)
T PRK09404        185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV  261 (924)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence            6899999999999999999999999999888754   68999999999988      6668999999 6999999999  


Q ss_pred             cCCCHHHHHHHHhcCC-------CCCCC----------CCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCC
Q 026778          103 RGFSMQEFANQCFGNK-------ADYGK----------GRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD  165 (233)
Q Consensus       103 rG~~~~~~l~e~~g~~-------~g~~~----------Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~  165 (233)
                      +|+|++++|+|++|++       +|.++          |+++++|++...     ..+++|.+.|+|+|.|+|.++++.+
T Consensus       262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~-----npShleav~Pva~G~A~A~q~~~~~  336 (924)
T PRK09404        262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAF-----NPSHLEIVNPVVEGSVRARQDRRGD  336 (924)
T ss_pred             cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccC-----CccccccccCeehhHHHHHHHhcCC
Confidence            5999999999999997       44444          666777765544     2388999999999999999999888


Q ss_pred             ------CeEEEEEcCCcc-chhhHHHHHHHHHHcCCC---EEEEEecCCccccccccccccCCCchh--hhcccccccc
Q 026778          166 ------ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSIPSLP--CLSNILTILL  232 (233)
Q Consensus       166 ------~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~~~~~q~~~~~~~~--~~~~~~~~~~  232 (233)
                            .+++|++||||+ +||.|||+||+|+.|++|   +||||+||+|+++||.+++.+...+.+  +-.++|.+.|
T Consensus       337 ~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~V  415 (924)
T PRK09404        337 GQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHV  415 (924)
T ss_pred             cccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEE
Confidence                  899999999998 799999999999999998   999999999999999998877766543  4556787765

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

Probab=100.00  E-value=3.1e-34  Score=255.32  Aligned_cols=166  Identities=18%  Similarity=0.163  Sum_probs=149.9

Q ss_pred             cccCcchHHHHHHHHhccCC------CCeEecC-Cccchhhhh--cCCCHHHHHHHHhcCCC---CCCCCCCCCcccCCC
Q 026778           67 YLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA---DYGKGRQMPIHYGSN  134 (233)
Q Consensus        67 ~~~~~GqEa~~vg~~~aL~~------~D~~~~~-yR~~~~~l~--rG~~~~~~l~e~~g~~~---g~~~Gr~~~~H~~~~  134 (233)
                      .+++.|+|++++++...+++      +||++++ ||++...|+  +|.|++++|+|++|+.+   +.+.|++.+.|++.+
T Consensus        14 rfs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~   93 (265)
T cd02016          14 RFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYS   93 (265)
T ss_pred             EEEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccC
Confidence            34699999999999999987      7999999 999999999  99999999999999987   556799999999776


Q ss_pred             c-----------cccccccccCCCCchhhhHHHHHhhhcC-----CCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCC--
Q 026778          135 K-----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP--  195 (233)
Q Consensus       135 ~-----------~~~~~~~g~lG~~~~~A~G~A~a~k~~~-----~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lP--  195 (233)
                      .           ..+.+..|+||+++|+|+|+|+|.|+++     ++.+++|++|||++ +||.|||+||+|+.|++|  
T Consensus        94 ~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~g  173 (265)
T cd02016          94 SDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTG  173 (265)
T ss_pred             cccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCC
Confidence            5           6788899999999999999999999998     47899999999995 799999999999999999  


Q ss_pred             -EEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          196 -VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       196 -vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                       +||||+||+|++|||.+++++...+.++-+  ++|.+.|
T Consensus       174 g~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~V  213 (265)
T cd02016         174 GTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHV  213 (265)
T ss_pred             CEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEE
Confidence             999999999999999999998887766554  4666654

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.97  E-value=3e-30  Score=251.80  Aligned_cols=168  Identities=16%  Similarity=0.150  Sum_probs=144.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccC---CCCeEe--cCCccchhh
Q 026778           27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK---NDDFVV--PQYREPGVL  100 (233)
Q Consensus        27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~---~~D~~~--~~yR~~~~~  100 (233)
                      |.+.+.++.++|.++-..+   |.     ..+++.++. |+++++.|+  +.++++.++.   |.|+++  ++||+|++.
T Consensus         9 p~d~~~l~~~~l~~l~~~i---r~-----~~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~   78 (581)
T PRK12315          9 PADLKKLSLDELEQLASEI---RT-----ALLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHK   78 (581)
T ss_pred             HHHHhhCCHHHHHHHHHHH---HH-----HHHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHH
Confidence            3456677777776665443   43     334455666 489999999  7777788887   999999  999999999


Q ss_pred             hhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchh
Q 026778          101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG  180 (233)
Q Consensus       101 l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G  180 (233)
                      |++|.+++.++++++|+.+|++++++ +.|..       ..++++|++++.|+|+|+|.|+++++++++|++|||++++|
T Consensus        79 l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG  150 (581)
T PRK12315         79 MLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGG  150 (581)
T ss_pred             HHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcc
Confidence            99999999999999999999999877 33311       25688999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 026778          181 DFHAALNFSAVTEAPVIFICRNNGWAISTPIS  212 (233)
Q Consensus       181 ~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~  212 (233)
                      .+|||||+|+.|++|+||||+||+|+||+++.
T Consensus       151 ~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~  182 (581)
T PRK12315        151 LALEGLNNAAELKSNLIIIVNDNQMSIAENHG  182 (581)
T ss_pred             hHHHHHHHHHhhCCCEEEEEECCCCcCCCCCc
Confidence            99999999999999999999999999999885

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=99.93  E-value=1.1e-25  Score=227.41  Aligned_cols=198  Identities=16%  Similarity=0.129  Sum_probs=164.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHHHHHHHh-cCcccccccCcchHHHHHHHHhcc------CCCCeEecC-Cccchhhhh
Q 026778           31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLW  102 (233)
Q Consensus        31 ~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r-~G~i~~~~~~~GqEa~~vg~~~aL------~~~D~~~~~-yR~~~~~l~  102 (233)
                      ..+|+|+-+++++.++.+-.||.-+...+- +.|    ++..|-|+.-.++-..+      .-.|++++. ||++...|+
T Consensus       184 ~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KR----FslEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~  259 (929)
T TIGR00239       184 AQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKR----FSLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLV  259 (929)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCce----eecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHH
Confidence            468999999999999999999988765542 222    44567777654443333      467999999 999999999


Q ss_pred             --cCCCHHHHHHHHhcCCCC-CCCCCCCC-cccCC-----------CccccccccccCCCCchhhhHHHHHhhhcCC---
Q 026778          103 --RGFSMQEFANQCFGNKAD-YGKGRQMP-IHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK---  164 (233)
Q Consensus       103 --rG~~~~~~l~e~~g~~~g-~~~Gr~~~-~H~~~-----------~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~---  164 (233)
                        +|.|++++|+|+.|+..+ .+.|++.. .|++.           ....+.+..|+|+.+.|+|+|.|+|.++++.   
T Consensus       260 nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~  339 (929)
T TIGR00239       260 NVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSP  339 (929)
T ss_pred             HHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcc
Confidence              999999999999998876 34577776 88885           4567788999999999999999999998865   


Q ss_pred             ---CCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCE---EEEEecCCccccccccccccCCCch--hhhcccccccc
Q 026778          165 ---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSIPSL--PCLSNILTILL  232 (233)
Q Consensus       165 ---~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPv---vfvv~nN~~ais~~~~~q~~~~~~~--~~~~~~~~~~~  232 (233)
                         +.+++|++|||++ +||.|||+||+|+.|++|+   ||||+||+|++||+.+.+.+...+.  ++-.++|.+.|
T Consensus       340 ~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~V  416 (929)
T TIGR00239       340 ESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHV  416 (929)
T ss_pred             cccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEE
Confidence               5799999999995 8999999999999999997   9999999999999988887666654  45556777665

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.6e-22  Score=173.64  Aligned_cols=182  Identities=15%  Similarity=0.148  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh------hh
Q 026778           37 VAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LL  101 (233)
Q Consensus        37 ~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~------~l  101 (233)
                      ...++-+...-+|+-.-++.....+|..|--.+..  |..+|.....|+  |       .|+++.+ .+|+.      +.
T Consensus         6 ~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~--eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La   82 (243)
T COG3959           6 SVDELERIAREIRRNIVRMLANAGSGHVGGSLSVV--EILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA   82 (243)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHH--HHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence            34556666677788877777777777655444444  666777777653  3       4788888 57762      34


Q ss_pred             hcCCCHHHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchh
Q 026778          102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG  180 (233)
Q Consensus       102 ~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G  180 (233)
                      .+|+-+++-+. -|++.     |...++|... +..|+...+|++|+++++|+|+|++.|+++.+..|+|++|||+++||
T Consensus        83 e~G~~p~eeL~-~~~~~-----~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG  156 (243)
T COG3959          83 EKGYFPEEELE-TFRRI-----GSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG  156 (243)
T ss_pred             HcCCCCHHHHH-HhccC-----CCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence            58987777666 67765     4457788755 55699999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCCCchhhhccc
Q 026778          181 DFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSIPSLPCLSNI  227 (233)
Q Consensus       181 ~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~  227 (233)
                      ++|||+.+|++++| ++|.||+-|+.|++..+++.++.+|+++||++.
T Consensus       157 ~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAF  204 (243)
T COG3959         157 QVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAF  204 (243)
T ss_pred             cHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhc
Confidence            99999999999999 589999999999999999999999999999863

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=99.84  E-value=1.6e-20  Score=185.80  Aligned_cols=176  Identities=16%  Similarity=0.192  Sum_probs=129.9

Q ss_pred             HHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--CC-------CeEecCCccchh------hhhcCC--CHH
Q 026778           46 VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--ND-------DFVVPQYREPGV------LLWRGF--SMQ  108 (233)
Q Consensus        46 ~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~~-------D~~~~~yR~~~~------~l~rG~--~~~  108 (233)
                      ..+|..-.++......|+++...++.  |...+-....|+  |+       |.++.+ .+|+.      +...|.  +.+
T Consensus         5 ~~iR~~~~~~~~~a~~GH~g~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-~GH~~~~lYa~l~~~G~~~~~e   81 (653)
T TIGR00232         5 NAIRHLAVDAIQKAKSGHPGAPLGAA--PIAEVLWTKFLKFNPTNPKWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSIE   81 (653)
T ss_pred             HHHHHHHHHHHHhcCCCCccchhHHH--HHHHHHHHHhhcCCCCCCCCCCCCeEEEE-CccHHHHHHHHHHHcCCCCCHH
Confidence            34565555555555566666555543  555554444565  33       777766 46664      334685  666


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCcc
Q 026778          109 EFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGT  177 (233)
Q Consensus       109 ~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~~  177 (233)
                      ++..  |.+.     |...+.|... ...++..++|++|++++.|+|+|+|.|+.+          .+.+++|++|||++
T Consensus        82 ~L~~--fr~~-----~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l  154 (653)
T TIGR00232        82 DLKQ--FRQL-----HSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCL  154 (653)
T ss_pred             HHHh--cccC-----CCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccc
Confidence            5443  4443     2234567644 346899999999999999999999999863          47899999999999


Q ss_pred             chhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc--cccccc
Q 026778          178 SEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN--ILTILL  232 (233)
Q Consensus       178 ~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~--~~~~~~  232 (233)
                      +||.+|||+++|+.|+|| +|+||+||+|+|+++++.++ .+++++|+++  |+.+.|
T Consensus       155 ~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v  211 (653)
T TIGR00232       155 QEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEV  211 (653)
T ss_pred             cccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEe
Confidence            999999999999999999 78899999999999999987 6899999886  555544

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>PRK12754 transketolase; Reviewed

Probab=99.84  E-value=2.7e-20  Score=184.16  Aligned_cols=174  Identities=18%  Similarity=0.228  Sum_probs=129.8

Q ss_pred             HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--CC-------CeEecCCccchh------hhhcCC--CHHH
Q 026778           47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--ND-------DFVVPQYREPGV------LLWRGF--SMQE  109 (233)
Q Consensus        47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~~-------D~~~~~yR~~~~------~l~rG~--~~~~  109 (233)
                      .+|.+-.++...-..|+.|...++.  |...+-....|+  |.       |.++.+ .+|+.      +...|.  ++++
T Consensus        10 ~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS-~GH~~~~lYa~l~~~G~~~~~e~   86 (663)
T PRK12754         10 AIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLNHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPMEE   86 (663)
T ss_pred             HHHHHHHHHHHhcCCCCcccchHHH--HHHHHHHHHhcCCCccCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCCHHH
Confidence            3565555555544566666555544  555555555565  33       777776 46774      334674  7766


Q ss_pred             HHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCccc
Q 026778          110 FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTS  178 (233)
Q Consensus       110 ~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~~~  178 (233)
                      +..  |.+-++     ..+.|.-. ...|+..++|++|++++.|+|+|+|.|+++          .+.+++|++|||+++
T Consensus        87 L~~--fr~~gs-----~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~  159 (663)
T PRK12754         87 LKN--FRQLHS-----KTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMM  159 (663)
T ss_pred             HHH--hccCCC-----CCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhh
Confidence            543  554432     23556543 346899999999999999999999999986          378999999999999


Q ss_pred             hhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc--ccccc
Q 026778          179 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN--ILTIL  231 (233)
Q Consensus       179 ~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~--~~~~~  231 (233)
                      ||.+|||+++|++|+|| +||||+||+|+|+++++.++ .+++++|+++  |+.|.
T Consensus       160 EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~  214 (663)
T PRK12754        160 EGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIR  214 (663)
T ss_pred             chHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEe
Confidence            99999999999999998 68999999999999999987 6899999886  55554

>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O

Probab=99.82  E-value=2.6e-20  Score=162.73  Aligned_cols=145  Identities=19%  Similarity=0.265  Sum_probs=121.9

Q ss_pred             CcchHHHHHHHHhccCC-CCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCC
Q 026778           70 TSGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQ  148 (233)
Q Consensus        70 ~~GqEa~~vg~~~aL~~-~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~  148 (233)
                      +.||+++++.+.+.|.. .|++||.||.+.    .|  +++++.++ +    ...|  .++|......|+...+|+||.+
T Consensus         1 g~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qf-s----~~gg--~psH~~~~tpGi~~~~G~LG~g   67 (227)
T cd02011           1 GPGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQF-S----FPGG--IPSHAAPETPGSIHEGGELGYS   67 (227)
T ss_pred             CCChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhc-C----CCCC--CCCCCcccCCCeeecccchhhH
Confidence            36999999988888987 599999999876    22  36677775 2    2233  7889988888999999999999


Q ss_pred             chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH---HHHHHHHHHcCCC-EEEEEecCCcccccccccc-ccCCCchhh
Q 026778          149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEAP-VIFICRNNGWAISTPISDQ-FRSIPSLPC  223 (233)
Q Consensus       149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~---~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q-~~~~~~~~~  223 (233)
                      +++|+|+|    +++.+.+|+|++|||++++|.+   ||+.+++..+++. |+.|++||+|+|++|+..+ ++.++++++
T Consensus        68 Ls~A~G~a----~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~  143 (227)
T cd02011          68 LSHAYGAV----FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEAL  143 (227)
T ss_pred             HHHHHHhh----hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHH
Confidence            99999997    4678899999999999999997   9999999999995 7888999999999999965 678899999


Q ss_pred             hcc--ccccc
Q 026778          224 LSN--ILTIL  231 (233)
Q Consensus       224 ~~~--~~~~~  231 (233)
                      +++  |+.+.
T Consensus       144 ~~~yG~~~~~  153 (227)
T cd02011         144 FRGYGYEPYF  153 (227)
T ss_pred             HHhCCCceEE
Confidence            987  44443

This enzyme requires divalent magnesium ions and TPP for activity.

>PRK12753 transketolase; Reviewed

Probab=99.82  E-value=1.2e-19  Score=179.87  Aligned_cols=169  Identities=17%  Similarity=0.196  Sum_probs=122.3

Q ss_pred             HhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh------hhhcC--CCHHHH
Q 026778           48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRG--FSMQEF  110 (233)
Q Consensus        48 ~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~------~l~rG--~~~~~~  110 (233)
                      +|.+-.++......|+++...++.  |.+.+.....|+  |       .|.++.+ .+|+.      +...|  ++.+++
T Consensus        11 iR~~~~~~~~~a~~GH~g~~ls~~--~i~~~Ly~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~~~G~~~~~e~L   87 (663)
T PRK12753         11 IRALSMDAVQKANSGHPGAPMGMA--DIAEVLWRDFLKHNPTNPTWYDRDRFILS-NGHASMLLYSLLHLTGYDLPIEEL   87 (663)
T ss_pred             HHHHHHHHHHhcCCCCchhhHHHH--HHHHHHHHHHhCCCccCCCCCCCCcEEEe-cccHHHHHHHHHHHhCCCCCHHHH
Confidence            455444444443456665544443  444444444553  3       3776666 46664      44567  455554


Q ss_pred             HHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCccch
Q 026778          111 ANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGTSE  179 (233)
Q Consensus       111 l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~~~~  179 (233)
                      ..  |.+.++     ..+.|.-. ...++..++|++|++++.|+|+|+|.|+++.          +.+|+|++|||+++|
T Consensus        88 ~~--fr~~~s-----~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~E  160 (663)
T PRK12753         88 KN--FRQLHS-----KTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLME  160 (663)
T ss_pred             HH--hccCCC-----CCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCcccc
Confidence            32  544332     23456533 3568899999999999999999999998753          689999999999999


Q ss_pred             hhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhccc
Q 026778          180 GDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSNI  227 (233)
Q Consensus       180 G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~  227 (233)
                      |.+|||+|+|+.|+|| +|+||+||+|+|+++++.++ .+++.+++++.
T Consensus       161 G~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~  208 (663)
T PRK12753        161 GISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAY  208 (663)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHc
Confidence            9999999999999997 78899999999999999876 68888888763

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=99.81  E-value=1.8e-19  Score=153.96  Aligned_cols=117  Identities=18%  Similarity=0.193  Sum_probs=89.9

Q ss_pred             CCCeEecCCccchh---hhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCc-cccccccccCCCCchhhhHHHHHhhh
Q 026778           86 NDDFVVPQYREPGV---LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKM  161 (233)
Q Consensus        86 ~~D~~~~~yR~~~~---~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~-~~~~~~~g~lG~~~~~A~G~A~a~k~  161 (233)
                      +.|.++.+ .+|+.   +...|.  .+-+.+ |.+.     |. .+.|..... .++...+|++|+++|.|+|+|+|.|+
T Consensus        24 ~rDr~ils-~gH~~~~~~~~~g~--~~~l~~-~~~~-----~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~   93 (195)
T cd02007          24 PKDKIIWD-VGHQAYPHKILTGR--RDQFHT-LRQY-----GG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDL   93 (195)
T ss_pred             CCCeEEEe-cccHHHHHHHHHCC--HHHHhh-hhcC-----CC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHH
Confidence            56777776 35553   333454  222222 3332     11 344533222 45667899999999999999999999


Q ss_pred             cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 026778          162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS  212 (233)
Q Consensus       162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~  212 (233)
                      ++++++++|++|||+++||.+|||+++|+.+++|+++||+||+|++++++.
T Consensus        94 ~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~  144 (195)
T cd02007          94 KGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG  144 (195)
T ss_pred             hCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC
Confidence            999999999999999999999999999999999999999999999998865

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

>PLN02790 transketolase

Probab=99.81  E-value=2.1e-19  Score=177.87  Aligned_cols=156  Identities=19%  Similarity=0.216  Sum_probs=115.1

Q ss_pred             hcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC---CHHHHHHHHhcCCCCC
Q 026778           60 RQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF---SMQEFANQCFGNKADY  121 (233)
Q Consensus        60 r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~---~~~~~l~e~~g~~~g~  121 (233)
                      ..|.++.-.++.  |.+.+-....|+         +.|.++.+ -+|+.      +...|.   +.+++..  |.+.++.
T Consensus        13 ~~GH~g~~ls~~--ei~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~~~~lYa~l~~~G~~~~~~~~l~~--~r~~~s~   87 (654)
T PLN02790         13 NSGHPGLPMGCA--PMGHVLYDEVMKYNPKNPYWFNRDRFVLS-AGHGCMLQYALLHLAGYDSVQMEDLKQ--FRQWGSR   87 (654)
T ss_pred             CCCcCCchhhHH--HHHHHHHHhhcccCCCCCCCCCCCEEEEe-CcchHHHHHHHHHHcCCCCCCHHHHHH--hccCCCC
Confidence            456665554443  555443334444         45888776 35553      556776   5655432  5554332


Q ss_pred             CCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhh-----cCC-----CCeEEEEEcCCccchhhHHHHHHHHH
Q 026778          122 GKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKM-----DRK-----DACAVTYFGDGGTSEGDFHAALNFSA  190 (233)
Q Consensus       122 ~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~-----~~~-----~~vvv~~~GDG~~~~G~~~Ealn~A~  190 (233)
                           .+.|.-. ...++...+|++|++++.|+|+|+|.|+     +++     +.+|+|++|||+++||.+|||+|+|+
T Consensus        88 -----~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~  162 (654)
T PLN02790         88 -----TPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAG  162 (654)
T ss_pred             -----CCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHH
Confidence                 2346433 3468899999999999999999999995     332     68999999999999999999999999


Q ss_pred             HcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778          191 VTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       191 ~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      .|+|| +|+||+||+|+|+++++.+. .+++.+++++
T Consensus       163 ~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a  198 (654)
T PLN02790        163 HWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA  198 (654)
T ss_pred             HhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence            99998 89999999999999998765 6778887775

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.81  E-value=1.4e-19  Score=178.17  Aligned_cols=173  Identities=18%  Similarity=0.134  Sum_probs=121.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecC--Cccchhhhhc
Q 026778           27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWR  103 (233)
Q Consensus        27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~--yR~~~~~l~r  103 (233)
                      |.+.+.++.++|.++-..   +|.+=..+.. ...|.++.-.++.  |.+ +++...++ +.|.++.+  |...++.+.+
T Consensus         7 p~dl~~l~~~~l~~la~~---iR~~~i~~~~-~~~GH~g~~ls~v--el~-~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~   79 (617)
T TIGR00204         7 PQELRLLSIDELEKLCDE---LRRYLLESVS-ASGGHLASGLGTV--ELT-VALHYVFNTPKDQFIWDVGHQAYPHKLLT   79 (617)
T ss_pred             HHHHhhCCHHHHHHHHHH---HHHHHHHHHh-ccCCCcCcchhHH--HHH-HHHHhhCCCCCCcEEEecchHHHHHHHHh
Confidence            345567777776665443   3554444433 2456655444443  444 34455666 67988876  3333455667


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccc-cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH
Q 026778          104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF  182 (233)
Q Consensus       104 G~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~-~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~  182 (233)
                      |. . +-|.. +.+.     |. .+.|....+.++. ..+|++|++++.|+|+|+|.|+++++.+++|++|||++++|.+
T Consensus        80 G~-~-~~l~~-~r~~-----g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~  150 (617)
T TIGR00204        80 GR-R-EKFST-LRQK-----KG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMA  150 (617)
T ss_pred             Cc-H-HHhcc-hhhc-----CC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccH
Confidence            75 2 22321 2222     21 4445444344444 3789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEecCCccccccccccc
Q 026778          183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQF  215 (233)
Q Consensus       183 ~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~  215 (233)
                      |||+|+|+.|+||+||||+||+|+|++++..++
T Consensus       151 ~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~  183 (617)
T TIGR00204       151 FEALNHAGDLKTDMIVILNDNEMSISENVGALS  183 (617)
T ss_pred             HHHHHHHHhcCCCEEEEEECCCcccCCCchHHH
Confidence            999999999999999999999999999987553

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PTZ00089 transketolase; Provisional

Probab=99.80  E-value=7.5e-19  Score=174.13  Aligned_cols=169  Identities=18%  Similarity=0.194  Sum_probs=119.4

Q ss_pred             HhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CHHHH
Q 026778           48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SMQEF  110 (233)
Q Consensus        48 ~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~~~~  110 (233)
                      +|.+-..+......|+++.-.++.  |.+.+-....|+         +.|.++.+ .+|+.      +...|.  +.+++
T Consensus        13 iR~~~~~~~~~a~~GH~g~~ls~~--ei~~~L~~~~l~~~~~~~~~~~rDr~vls-~GH~~~~lYa~l~l~G~~~~~~~l   89 (661)
T PTZ00089         13 IRCLSADLVQKANSGHPGAPMGMA--PIAHILWSEVMKYNPKDPRWINRDRFVLS-NGHASALLYSMLHLTGYDLSMEDL   89 (661)
T ss_pred             HHHHHHHHHHhcCCCCcchhhHHH--HHHHHHHHHhhcCCCcCCCCCCCCEEEEe-CcchHHHHHHHHHHcCCCCCHHHH
Confidence            455444444333456655544443  444433323554         34887666 35553      556774  55553


Q ss_pred             HHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCccch
Q 026778          111 ANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGTSE  179 (233)
Q Consensus       111 l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~~~~  179 (233)
                       .. |.+.++.     .+.|.-. ...++...+|++|++++.|+|+|+|.|+++.          +..|+|++|||+++|
T Consensus        90 -~~-fr~~~s~-----~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~e  162 (661)
T PTZ00089         90 -KN-FRQLGSR-----TPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQE  162 (661)
T ss_pred             -Hh-cCCCCCC-----CCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhh
Confidence             32 4443332     2345432 2457888999999999999999999999754          789999999999999


Q ss_pred             hhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhccc
Q 026778          180 GDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSNI  227 (233)
Q Consensus       180 G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~  227 (233)
                      |.+|||+|+|+.|+|| +|+||+||+|+|+++++.+. .+++.+++++.
T Consensus       163 G~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~  210 (661)
T PTZ00089        163 GVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAY  210 (661)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhc
Confidence            9999999999999997 78999999999999998764 67888887653

>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E

Probab=99.78  E-value=3.5e-18  Score=159.05  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=115.3

Q ss_pred             CcccccccCcchHHHHHHHHhccCC------CCeEecCCccchh------hhhcCC-CHHHHHHHHhcCCCCCCCCCCCC
Q 026778           62 GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV------LLWRGF-SMQEFANQCFGNKADYGKGRQMP  128 (233)
Q Consensus        62 G~i~~~~~~~GqEa~~vg~~~aL~~------~D~~~~~yR~~~~------~l~rG~-~~~~~l~e~~g~~~g~~~Gr~~~  128 (233)
                      |.++...++.  |.+.+.....|+.      .|.|+ + .+|+.      +..+|. |.++ +.. |.+.++.   ...+
T Consensus        31 GH~G~slS~a--dI~~aLy~~~l~~~p~~~~RDRvl-S-kGHas~~lYA~L~l~G~~~~ed-L~~-fr~~gs~---p~l~  101 (386)
T cd02017          31 GHIATFASAA--TLYEVGFNHFFRARGEGGGGDLVY-F-QGHASPGIYARAFLEGRLTEEQ-LDN-FRQEVGG---GGLS  101 (386)
T ss_pred             CCCCcchhHH--HHHHHHHHHhcCCCCCCCCCCEEE-e-CCcccHHHHHHHHHcCCCCHHH-HHh-hccCCCC---CCCC
Confidence            4444444443  4544444456774      68855 4 67764      445784 5555 443 4443221   1233


Q ss_pred             cccCC--CccccccccccCCCCchhhhHHHHHhhh-------cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEE
Q 026778          129 IHYGS--NKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF  198 (233)
Q Consensus       129 ~H~~~--~~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvf  198 (233)
                      .|...  ...++..++|++|++++.|+|+|+|.|+       ++.+..|+|++|||+++||.+|||+++|+.++| ++|+
T Consensus       102 g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLiv  181 (386)
T cd02017         102 SYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIF  181 (386)
T ss_pred             CCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEE
Confidence            34322  1235888999999999999999999998       567889999999999999999999999999999 6999


Q ss_pred             EEecCCcccccccccc-ccCCCchhhhccc
Q 026778          199 ICRNNGWAISTPISDQ-FRSIPSLPCLSNI  227 (233)
Q Consensus       199 vv~nN~~ais~~~~~q-~~~~~~~~~~~~~  227 (233)
                      |+++|+++|+.++..+ +..+++++||.+.
T Consensus       182 IvD~N~~qidG~t~~v~~~~e~l~~kf~Af  211 (386)
T cd02017         182 VVNCNLQRLDGPVRGNGKIIQELEGIFRGA  211 (386)
T ss_pred             EEECCCCccCCcccccccCchhHHHHHHhc
Confidence            9999999999999987 4789999999763

coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.78  E-value=1.2e-18  Score=170.21  Aligned_cols=173  Identities=16%  Similarity=0.123  Sum_probs=123.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecCCccchh---h
Q 026778           25 FPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPGV---L  100 (233)
Q Consensus        25 ~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~yR~~~~---~  100 (233)
                      -.|.+.+.++.++|.++-   ..+|.+-.++... ..|+++.-.++.  |.+.+ +...++ +.|.++.+ .+|+.   +
T Consensus        11 ~~~~~~~~~~~~~l~~~a---~~iR~~~~~~~~~-~~gH~g~~ls~~--~i~~~-L~~~~~~~rDr~ils-~GH~~y~~~   82 (580)
T PRK05444         11 NSPADLKKLSEEELPQLA---DEIREFLIDVVSK-TGGHLGSNLGVV--ELTVA-LHYVFDTPKDRIIWD-VGHQAYPHK   82 (580)
T ss_pred             CCHHHHhcCCHHHHHHHH---HHHHHHHHHHHHh-cCCCcCCCccHH--HHHHH-HHHhcCCCCccEEEe-ccHHHHHHH
Confidence            344566778877766553   3346555555543 466666655554  55443 334554 56888877 46653   4


Q ss_pred             hhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCc-cccccccccCCCCchhhhHHHHHhhhc-CCCCeEEEEEcCCccc
Q 026778          101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD-RKDACAVTYFGDGGTS  178 (233)
Q Consensus       101 l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~-~~~~~~~g~lG~~~~~A~G~A~a~k~~-~~~~vvv~~~GDG~~~  178 (233)
                      ...|. .++ +. -|.+.++      .+.|..... .++..++|++|+++|.|+|+|+|.|++ +.++.++|++|||+++
T Consensus        83 ~~~g~-~~~-l~-~~~~~~s------~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~  153 (580)
T PRK05444         83 ILTGR-RDR-FD-TLRQKGG------LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALT  153 (580)
T ss_pred             HHhCc-HHH-hc-CcccCCC------CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccc
Confidence            44564 222 22 1333221      235654433 678889999999999999999999998 5889999999999999


Q ss_pred             hhhHHHHHHHHHHcCCCEEEEEecCCcccccccccc
Q 026778          179 EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ  214 (233)
Q Consensus       179 ~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q  214 (233)
                      ||.+|||+++|+.+++|+++|++||+|+|++++..+
T Consensus       154 eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~  189 (580)
T PRK05444        154 GGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGAL  189 (580)
T ss_pred             cCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhh
Confidence            999999999999999999999999999999988655

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

Probab=99.77  E-value=4.9e-18  Score=150.13  Aligned_cols=157  Identities=20%  Similarity=0.238  Sum_probs=113.4

Q ss_pred             hcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC-CHHHHHHHHhcCCCCCCC
Q 026778           60 RQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF-SMQEFANQCFGNKADYGK  123 (233)
Q Consensus        60 r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~-~~~~~l~e~~g~~~g~~~  123 (233)
                      ..|.++...++.  |...+-....|+         +.|.++.+ .+|+.      +...|. +.+++. . |...+    
T Consensus        15 ~~gh~g~~~s~~--~i~~~L~~~~~~~~~~~~~~~~rd~~v~s-~gH~~~~~ya~l~~~g~~~~~~l~-~-~~~~g----   85 (255)
T cd02012          15 GSGHPGGSLSAA--DILAVLYFKVLKYDPADPKWPNRDRFVLS-KGHASPALYAVLALAGYLPEEDLK-T-FRQLG----   85 (255)
T ss_pred             CCCCcCccHHHH--HHHHHHHHHHhCcCCcCCCCCCCCeEEEc-CCcHHHHHHHHHHHcCCCCHHHHH-H-hcccC----
Confidence            345554444333  555444444443         23655544 34553      334565 444433 2 44332    


Q ss_pred             CCCCCcccCCC-ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCC-EEEEEe
Q 026778          124 GRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICR  201 (233)
Q Consensus       124 Gr~~~~H~~~~-~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lP-vvfvv~  201 (233)
                       ...+.|.... ..++...+|++|.++|.|+|+|+|.|+.+.++.|+|++|||++++|.+||++++|+.++|| +++|++
T Consensus        86 -s~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvd  164 (255)
T cd02012          86 -SRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVD  164 (255)
T ss_pred             -CCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEE
Confidence             2345565432 3488889999999999999999999999999999999999999999999999999999997 899999


Q ss_pred             cCCccccccccccccCCCchhhhcc
Q 026778          202 NNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       202 nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      ||+|+++.+.......+++++++++
T Consensus       165 nN~~~~~~~~~~~~~~~~~~~~~~a  189 (255)
T cd02012         165 SNRIQIDGPTDDILFTEDLAKKFEA  189 (255)
T ss_pred             CCCccccCcHhhccCchhHHHHHHH
Confidence            9999999998887778888887765

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.

>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2

Probab=99.75  E-value=2.6e-18  Score=157.94  Aligned_cols=170  Identities=21%  Similarity=0.240  Sum_probs=118.3

Q ss_pred             HHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCC---------CCeEecCCccchhh------hhcCC--CHH
Q 026778           46 VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN---------DDFVVPQYREPGVL------LWRGF--SMQ  108 (233)
Q Consensus        46 ~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~---------~D~~~~~yR~~~~~------l~rG~--~~~  108 (233)
                      ..+|..-..+......|..|...++.  |...+.....|+.         .|.++.+ .+|+..      ..+|.  +.+
T Consensus         6 ~~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~   82 (332)
T PF00456_consen    6 NTIRKLILDMVQKAGSGHPGSSLSAA--DILYALYFKVLRYDPKNPKWPNRDRFVLS-KGHASPALYAILALRGYDLSEE   82 (332)
T ss_dssp             HHHHHHHHHHHHHHT-S-SHHHHHHH--HHHHHHHHHT-BBBTTBTTSTTS-EEEES-SGGGHHHHHHHHHHTTSSS-HH
T ss_pred             HHHHHHHHHHHHHhCCCCCcchHHHH--HHHHHHHhhccccCCccccCCCCCcEEEe-ccchhHHHHHHHHHhcCCCCHH
Confidence            44566666666666777776555554  5555555556653         4888888 678732      23565  444


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccC-CCccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCcc
Q 026778          109 EFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGT  177 (233)
Q Consensus       109 ~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~~  177 (233)
                      ++.  -|.+.     |...+.|.. ....|+..++|++|++++.|+|+|+|.|+.+          .+..|+|++|||++
T Consensus        83 ~L~--~fr~~-----~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel  155 (332)
T PF00456_consen   83 DLK--TFRQL-----GSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGEL  155 (332)
T ss_dssp             HHT--TTTST-----TSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHH
T ss_pred             HHH--HhccC-----CCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccc
Confidence            432  24433     334566765 4567899999999999999999999998753          36789999999999


Q ss_pred             chhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778          178 SEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       178 ~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      +||..|||+.+|+.++|. +|+|+++|+.+++.+++... .+++.+|+++
T Consensus       156 ~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a  204 (332)
T PF00456_consen  156 QEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEA  204 (332)
T ss_dssp             HSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHH
T ss_pred             cchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHH
Confidence            999999999999999995 99999999999999998654 5778888875

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.75  E-value=1.5e-17  Score=164.95  Aligned_cols=163  Identities=13%  Similarity=0.106  Sum_probs=113.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecC--Cccchhhhhc
Q 026778           27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWR  103 (233)
Q Consensus        27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~--yR~~~~~l~r  103 (233)
                      |.+.+.++.++|.++-..   +|..-.++... ..|+++...++.  |.+. ++...++ |.|.++.+  |-..++++..
T Consensus        40 p~dlk~l~~~~l~~la~~---iR~~ii~~~~~-~~GH~g~~Ls~v--el~~-aL~~~~~~p~Dr~i~s~GH~ay~~~~l~  112 (677)
T PLN02582         40 PIHMKNLSVKELKQLADE---LRSDVIFNVSK-TGGHLGSSLGVV--ELTV-ALHYVFNAPQDKILWDVGHQSYPHKILT  112 (677)
T ss_pred             HHHHhhCCHHHHHHHHHH---HHHHHHHHHHh-cCCCcCccccHH--HHHH-HHHHhhCCCCCeEEEECcchHHHHHHHH
Confidence            345566777777765444   46554444432 246665444443  5543 3445564 88998876  3333455556


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCcccCCC-ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH
Q 026778          104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF  182 (233)
Q Consensus       104 G~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~  182 (233)
                      |. .++ |. -+.+.     |. .+.|.... ..+....+|++|++++.|+|+|+|.|++++++.++|++|||++++|++
T Consensus       113 gr-~~~-l~-~~r~~-----g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~  183 (677)
T PLN02582        113 GR-RDK-MH-TMRQT-----NG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQA  183 (677)
T ss_pred             cc-HHH-hc-ccccC-----CC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhH
Confidence            65 122 22 12222     11 44454332 256667899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEecCCc
Q 026778          183 HAALNFSAVTEAPVIFICRNNGW  205 (233)
Q Consensus       183 ~Ealn~A~~~~lPvvfvv~nN~~  205 (233)
                      |||+|+|+.|++|+|+||+||++
T Consensus       184 ~Ealn~a~~~~~~li~iv~~N~~  206 (677)
T PLN02582        184 YEAMNNAGYLDSDMIVILNDNKQ  206 (677)
T ss_pred             HHHHHHHHhhCcCEEEEEECCCC
Confidence            99999999999999999999995

>PRK05899 transketolase; Reviewed

Probab=99.72  E-value=1.3e-16  Score=157.27  Aligned_cols=171  Identities=19%  Similarity=0.211  Sum_probs=120.5

Q ss_pred             HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CH
Q 026778           45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SM  107 (233)
Q Consensus        45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~  107 (233)
                      ...+|..-.++......|+++...++.  |...+.....|+         +.|.++.+ .+|+.      +..+|.  +.
T Consensus        12 a~~iR~~~~~~~~~~~~gH~g~~ls~~--~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s-~GH~~~~~Ya~l~~~G~~~~~   88 (624)
T PRK05899         12 ANAIRVLSIDAVQKANSGHPGMPMGAA--DIAYVLWTRFLRHDPKNPKWPNRDRFVLS-AGHGSMLLYSLLHLAGYDLSI   88 (624)
T ss_pred             HHHHHHHHHHHHHHcCCCCccchHHHH--HHHHHHHHHhhcCCCCCCCCCCCCEEEEE-ChhHHHHHHHHHHHcCCCCCH
Confidence            444566555555444556666554444  555443333454         24888766 46664      556786  44


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCc
Q 026778          108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGG  176 (233)
Q Consensus       108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~  176 (233)
                      ++ +.. +.+..+     ..+.|... ...++...+|++|+++|.|+|+|+|.++++.          ++.|+|++|||+
T Consensus        89 ~~-l~~-~~~~~~-----~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~  161 (624)
T PRK05899         89 DD-LKN-FRQLGS-----KTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGD  161 (624)
T ss_pred             HH-HHH-hcCCCC-----CCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcch
Confidence            44 333 333222     13445433 2257778899999999999999999998877          889999999999


Q ss_pred             cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778          177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      +++|.+|||+++|+.++|| +++|++||+|+++.++... ..+++++++++
T Consensus       162 ~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a  211 (624)
T PRK05899        162 LMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEA  211 (624)
T ss_pred             hhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhcc
Confidence            9999999999999999998 8899999999999988744 35677776654

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.70  E-value=3.8e-17  Score=148.18  Aligned_cols=115  Identities=21%  Similarity=0.219  Sum_probs=102.5

Q ss_pred             CCccchhhhhcCCCHH-HHHHHHhcCCC------CCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCC
Q 026778           93 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD  165 (233)
Q Consensus        93 ~yR~~~~~l~rG~~~~-~~l~e~~g~~~------g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~  165 (233)
                      .||+|+++...|.++. +++.+++|+.+      ||+.++++++|+...  ++...+++.|.++++|.|+++|.+.++++
T Consensus        14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~   91 (300)
T PRK11864         14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK   91 (300)
T ss_pred             ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence            5799999999999998 99999999887      888888887776554  66778999999999999999999998776


Q ss_pred             CeEEE-EEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccccc
Q 026778          166 ACAVT-YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP  210 (233)
Q Consensus       166 ~vvv~-~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~  210 (233)
                      +++|+ ++|||++.++.| |+|+.|+.+++|++|||+||++.++|-
T Consensus        92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TG  136 (300)
T PRK11864         92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTG  136 (300)
T ss_pred             CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCC
Confidence            66555 999999999997 999999999999999999999988874

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.68  E-value=4.7e-16  Score=153.83  Aligned_cols=179  Identities=18%  Similarity=0.160  Sum_probs=118.3

Q ss_pred             eEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecC
Q 026778           15 YRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ   93 (233)
Q Consensus        15 ~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~   93 (233)
                      +.+|+   ++-.|++.+.++.++|.++-.   .+|.+-..+.... .|+++.-.++.  |.+ +++...++ |.|.++.+
T Consensus         6 ~~~l~---~i~~p~dl~~l~~~~l~~~a~---~iR~~ii~~~~~~-~GH~g~~ls~v--el~-~aL~~~~~~prDr~i~s   75 (641)
T PRK12571          6 TPLLD---RIKGPADLRALSDAELEQLAD---ELRAEVISAVSET-GGHLGSSLGVV--ELT-VALHAVFNTPKDKLVWD   75 (641)
T ss_pred             CChhh---hcCCHHHHHhCCHHHHHHHHH---HHHHHHHHHHHHh-CCCcCCCchHH--HHH-HHHHHhcCCCCCcEEEE
Confidence            44455   344455677788777666533   3465544444322 46665554443  443 34445554 67888775


Q ss_pred             --CccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCcc-ccccccccCCCCchhhhHHHHHhhhcCCCCeEEE
Q 026778           94 --YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVT  170 (233)
Q Consensus        94 --yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~-~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~  170 (233)
                        |-..++++..|.  .+-|.. +.+.++      .+.|....+. +-....++-+++++.|+|+|+|.|+.+.++.++|
T Consensus        76 ~GH~~Y~~~~l~g~--~~~l~~-~r~~~~------l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~  146 (641)
T PRK12571         76 VGHQCYPHKILTGR--RDRFRT-LRQKGG------LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVA  146 (641)
T ss_pred             CchHHHHHHHHhCC--HHHHhh-hhhCCC------cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEE
Confidence              333335556675  233332 333222      2234322221 1112344457789999999999999999999999


Q ss_pred             EEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 026778          171 YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS  212 (233)
Q Consensus       171 ~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~  212 (233)
                      ++|||++++|.+|||+++|+.|++|+++|++||+|+|++++.
T Consensus       147 v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~  188 (641)
T PRK12571        147 VIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVG  188 (641)
T ss_pred             EEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCcc
Confidence            999999999999999999999999999999999999999985

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type

Probab=99.66  E-value=1.7e-15  Score=152.18  Aligned_cols=159  Identities=17%  Similarity=0.194  Sum_probs=115.5

Q ss_pred             CcccccccCcchHHHHHHHHhccCC------CCeEecCCccchh------hhhcCCCHHHHHHHHhcCCCCCCCCCCCCc
Q 026778           62 GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV------LLWRGFSMQEFANQCFGNKADYGKGRQMPI  129 (233)
Q Consensus        62 G~i~~~~~~~GqEa~~vg~~~aL~~------~D~~~~~yR~~~~------~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~  129 (233)
                      |+++.+.++.  |...+.....|+.      +|.|++  .+|+.      +...|.-.++-|.. |.+... ..|-++..
T Consensus       102 GHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~L~l~G~ls~e~L~~-FRq~~~-g~gL~shP  175 (885)
T TIGR00759       102 GHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYARAFLEGRLTEEQLDN-FRQEVQ-GDGLSSYP  175 (885)
T ss_pred             CCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHHHHHcCCCCHHHHHH-hcCCCC-CCCCCCCC
Confidence            4555555544  5556666666764      687655  57773      34568533444443 444321 22323323


Q ss_pred             ccCCCccccccccccCCCCchhhhHHHHHhhh-------cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEe
Q 026778          130 HYGSNKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICR  201 (233)
Q Consensus       130 H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~  201 (233)
                      |......++..++|++|.+++.|+|+|++.|+       ++.++.|+|++|||+++||..|||+.+|+.++| ++||||+
T Consensus       176 hp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD  255 (885)
T TIGR00759       176 HPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVIN  255 (885)
T ss_pred             CcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEe
Confidence            32222235788999999999999999999997       667889999999999999999999999999999 5999999


Q ss_pred             cCCcccccccccccc-CCCchhhhcc
Q 026778          202 NNGWAISTPISDQFR-SIPSLPCLSN  226 (233)
Q Consensus       202 nN~~ais~~~~~q~~-~~~~~~~~~~  226 (233)
                      +|+.++..|++.... .+++++++.+
T Consensus       256 ~N~~qlDG~v~~~~~i~e~le~~F~a  281 (885)
T TIGR00759       256 CNLQRLDGPVRGNGKIIQELESLFRG  281 (885)
T ss_pred             CCCCccCCccccccccchhHHHHHHh
Confidence            999999999997655 6788888764

WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=99.66  E-value=1.9e-15  Score=152.86  Aligned_cols=158  Identities=16%  Similarity=0.187  Sum_probs=115.1

Q ss_pred             CcccccccCcchHHHHHHHHhccCC------CCeEecCCccchh------hhhcCC-CHHHHHHHHhcCCCCCCCCCCCC
Q 026778           62 GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV------LLWRGF-SMQEFANQCFGNKADYGKGRQMP  128 (233)
Q Consensus        62 G~i~~~~~~~GqEa~~vg~~~aL~~------~D~~~~~yR~~~~------~l~rG~-~~~~~l~e~~g~~~g~~~Gr~~~  128 (233)
                      |+++...++.  |...+.....|+.      +|.|++.  +|+.      +...|. +.++ |.. |.+..+ .+|-+++
T Consensus       102 GH~gs~lS~a--~i~~vLy~~~lr~~~~~~~rD~Vlsk--GHasp~lYA~l~l~G~l~~e~-L~~-fRq~~~-~~gl~~~  174 (889)
T TIGR03186       102 GHIASYASAA--DLFEVGFNHFFRAAGDASGGDLVYFQ--PHSAPGVYARAFLEGFLSDAQ-LAH-YRQEIA-GPGLCSY  174 (889)
T ss_pred             CCCcCcHHHH--HHHHHHHHHhCCCCCCCCCCCEEEEC--CchHHHHHHHHHHcCCCCHHH-HHH-hcCCCC-CCCCCCC
Confidence            5555555444  5566666667774      6866655  5663      334685 5555 443 444321 1233344


Q ss_pred             cccCCCccccccccccCCCCchhhhHHHHHhhhcC-------CCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEE
Q 026778          129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFIC  200 (233)
Q Consensus       129 ~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~-------~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv  200 (233)
                      .|......++..++|++|++++.|+|+|++.|+..       .+..|+|++|||+++||..|||+.+|+.++| ++|||+
T Consensus       175 phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~Iv  254 (889)
T TIGR03186       175 PHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVI  254 (889)
T ss_pred             CCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEE
Confidence            45433233577899999999999999999988432       3688999999999999999999999999999 589999


Q ss_pred             ecCCcccccccccccc-CCCchhhhcc
Q 026778          201 RNNGWAISTPISDQFR-SIPSLPCLSN  226 (233)
Q Consensus       201 ~nN~~ais~~~~~q~~-~~~~~~~~~~  226 (233)
                      ++|+.+++.|++.... .+++++|+++
T Consensus       255 D~N~~qlDG~t~~~~~~~e~l~~kf~a  281 (889)
T TIGR03186       255 NCNLQRLDGPVRGNGRIIDELESQFAG  281 (889)
T ss_pred             eCCCCccCCccccccccchHHHHHHHh
Confidence            9999999999997544 6788888865

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.66  E-value=1.3e-15  Score=150.33  Aligned_cols=144  Identities=15%  Similarity=0.144  Sum_probs=101.3

Q ss_pred             cCcccccccCcchHHHHHHHHhccC-CCCeEecCCccch---hhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCc-
Q 026778           61 QGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-  135 (233)
Q Consensus        61 ~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~yR~~~---~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~-  135 (233)
                      .|+++.-.++.  |.+ +++...++ |.|.++.+ .+|.   +.+..|.- .+ |. -+...+    |  .+.|....+ 
T Consensus       103 ~GHlgssLs~v--El~-~aL~~vf~~p~DriI~s-~GHqaya~~~ltgr~-~~-l~-t~r~~g----g--l~G~p~~~es  169 (641)
T PLN02234        103 GGHLGSNLGVV--ELT-VALHYIFNTPHDKILWD-VGHQSYPHKILTGRR-GK-MK-TIRQTN----G--LSGYTKRRES  169 (641)
T ss_pred             CCCccccchHH--HHH-HHHHHhcCCCCCeEEEe-cchhHHHHHHHHhhh-hh-hc-ccccCC----C--cCCCCCCCCC
Confidence            55555444443  443 44555565 88998877 4555   44444431 11 21 122221    2  344643333 


Q ss_pred             cccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcc------ccc
Q 026778          136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------IST  209 (233)
Q Consensus       136 ~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~a------is~  209 (233)
                      .++...+|++|++++.|+|+|+|.+++++++.|+|++|||++++|+.|||+|.|+..+-++|+|++||+.+      ++.
T Consensus       170 ~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g  249 (641)
T PLN02234        170 EHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDG  249 (641)
T ss_pred             CCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCC
Confidence            47778999999999999999999999999999999999999999999999999997777899999999994      445


Q ss_pred             cccccccC
Q 026778          210 PISDQFRS  217 (233)
Q Consensus       210 ~~~~q~~~  217 (233)
                      +++.....
T Consensus       250 ~~~~v~~l  257 (641)
T PLN02234        250 PTQPVGAL  257 (641)
T ss_pred             CCCCcccH
Confidence            55544433

>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=1.6e-15  Score=146.21  Aligned_cols=172  Identities=17%  Similarity=0.151  Sum_probs=124.5

Q ss_pred             HHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh------hhhcCCCHH
Q 026778           44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRGFSMQ  108 (233)
Q Consensus        44 ~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~------~l~rG~~~~  108 (233)
                      .|-.+|..+.++...-..|..++..+..  |...+-....|+  +       .|.++.+ .+|+.      ....|..-.
T Consensus        13 ~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls-~GHa~~llYa~~~l~G~~~~   89 (632)
T KOG0523|consen   13 AVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLS-NGHACPLLYAHWHLAGYDRE   89 (632)
T ss_pred             HhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEe-ccccchHHHHHHHHhccCcH
Confidence            4667788888877766677666555443  455555555454  2       3666666 46663      334565444


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCC-CCeEEEEEcCCccchhhHHHHHH
Q 026778          109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALN  187 (233)
Q Consensus       109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~-~~vvv~~~GDG~~~~G~~~Ealn  187 (233)
                      +-|.++....      ..-+.|.-..-.++...+|++|++++.|+|+|++.|+.++ ++.|+|++|||+.+||..|||++
T Consensus        90 edl~~~Rq~~------s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s  163 (632)
T KOG0523|consen   90 EDLKNFRQIG------SDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMS  163 (632)
T ss_pred             HHHHHHHhhC------CCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHh
Confidence            4443333321      1223565544567777899999999999999999999998 99999999999999999999999


Q ss_pred             HHHHcCCC-EEEEEecCCccccccccccccCCCchhhh
Q 026778          188 FSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCL  224 (233)
Q Consensus       188 ~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~  224 (233)
                      +|++|+|. +|++.+||+.+|+++++..+..+-.+.|.
T Consensus       164 ~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~  201 (632)
T KOG0523|consen  164 LAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRF  201 (632)
T ss_pred             hhhhcccCCEEEEEccccccCCCCCcccccccHHHHHH
Confidence            99999995 78888999999999999887555544343

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=99.57  E-value=4.3e-14  Score=143.46  Aligned_cols=161  Identities=17%  Similarity=0.219  Sum_probs=116.2

Q ss_pred             CcccccccCcchHHHHHHHHhccC------CCCeEecCCccchh------hhhcC-CCHHHHHHHHhcCCCCCCCCCCCC
Q 026778           62 GRISFYLTTSGEEAINIASAAAIK------NDDFVVPQYREPGV------LLWRG-FSMQEFANQCFGNKADYGKGRQMP  128 (233)
Q Consensus        62 G~i~~~~~~~GqEa~~vg~~~aL~------~~D~~~~~yR~~~~------~l~rG-~~~~~~l~e~~g~~~g~~~Gr~~~  128 (233)
                      |+++.+.++.  +...++....|+      .+|.|+.  .+|+.      +...| ++.++ |.. |-+..+ ..|  .+
T Consensus       116 GH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~~~l~G~l~~e~-L~~-fR~~~~-~~g--l~  186 (896)
T PRK13012        116 GHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYF--QPHSAPGIYARAFLEGRLSEEQ-LDH-FRQEIG-GPG--LS  186 (896)
T ss_pred             CCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEE--CcchHHHHHHHHHHcCCCCHHH-HHH-hcCCCC-CCC--CC
Confidence            4555555443  555666666677      5687665  46763      34467 46555 433 444422 223  33


Q ss_pred             cccCC--CccccccccccCCCCchhhhHHHHHhhh-------cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEE
Q 026778          129 IHYGS--NKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF  198 (233)
Q Consensus       129 ~H~~~--~~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvf  198 (233)
                      .|...  .+.++...+|++|.+++.|+|.|++.|+       +..++.|+|++|||+++||..|||+.+|++++| ++||
T Consensus       187 ~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~  266 (896)
T PRK13012        187 SYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVF  266 (896)
T ss_pred             CCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEE
Confidence            33221  1234677899999999999999999993       556789999999999999999999999999999 6999


Q ss_pred             EEecCCcccccccccccc-CCCchhhhcc--ccccc
Q 026778          199 ICRNNGWAISTPISDQFR-SIPSLPCLSN--ILTIL  231 (233)
Q Consensus       199 vv~nN~~ais~~~~~q~~-~~~~~~~~~~--~~~~~  231 (233)
                      ||++|..++..|++.... .+++++++.+  |-.|.
T Consensus       267 ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~  302 (896)
T PRK13012        267 VINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIK  302 (896)
T ss_pred             EEECCCccccCccccccccchHHHHHHHhCCCEEEE
Confidence            999999999999988655 5788888754  44443

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B

Probab=99.52  E-value=1.8e-14  Score=128.18  Aligned_cols=170  Identities=18%  Similarity=0.165  Sum_probs=108.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHH-hcCcccccccCcchHHHHHHHHhccC-CCCeEec--CCccchhhhh
Q 026778           27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ-RQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW  102 (233)
Q Consensus        27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~-r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~--~yR~~~~~l~  102 (233)
                      |.+.+.+|.++|.++-+.+   |.+   +.+.. +.|  |...++.|-=-..+|+...+. |.|.++-  .|....|-+.
T Consensus         7 p~dlk~ls~~eL~~La~ei---R~~---ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiL   78 (270)
T PF13292_consen    7 PEDLKKLSIEELEQLAQEI---REF---IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKIL   78 (270)
T ss_dssp             HHHHTTS-GGGHHHHHHHH---HHH---HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHH---HHH---HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhc
Confidence            3355678888888776655   543   22222 222  345566666566788888886 8898874  5777788887


Q ss_pred             cCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH
Q 026778          103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF  182 (233)
Q Consensus       103 rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~  182 (233)
                      .|..-  -|.-+- +.    +|-.|-......++-.+ .+|+-+++++.|+|+|.|.++++++..+|+++||||++.|+.
T Consensus        79 TGR~~--~f~TlR-q~----gGlSGF~~r~ES~~D~f-~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma  150 (270)
T PF13292_consen   79 TGRRD--RFHTLR-QY----GGLSGFPKRSESEYDAF-GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMA  150 (270)
T ss_dssp             TTTCC--CGGGTT-ST----TS--SS--TTT-TT--S---SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHH
T ss_pred             cCcHH--Hhchhh-hc----CCcCCCCCcccCCCCcc-cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHH
Confidence            77431  011011 11    12122111122233433 679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEecCCcccccccc
Q 026778          183 HAALNFSAVTEAPVIFICRNNGWAISTPIS  212 (233)
Q Consensus       183 ~Ealn~A~~~~lPvvfvv~nN~~ais~~~~  212 (233)
                      +||||.|+..+.++|+|.+||+++||.++.
T Consensus       151 ~EALN~~g~~~~~liVILNDN~mSIs~nvG  180 (270)
T PF13292_consen  151 FEALNNAGHLKSNLIVILNDNEMSISPNVG  180 (270)
T ss_dssp             HHHHHHHHHHT-SEEEEEEE-SBSSSB--S
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCcccCCCcc
Confidence            999999999999999999999999998653

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=99.51  E-value=4e-13  Score=136.19  Aligned_cols=183  Identities=13%  Similarity=0.168  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhc----CcccccccCcchHHHHHHHHhccCC------CCeEecCCccchh-----
Q 026778           35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV-----   99 (233)
Q Consensus        35 ~e~l~~lyr~M~~~R~~d~~~~~l~r~----G~i~~~~~~~GqEa~~vg~~~aL~~------~D~~~~~yR~~~~-----   99 (233)
                      +.++.+..+..++...++.....-...    |.++.+.++.  +...++....|+.      +|.|+.  .+|+.     
T Consensus        77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA  152 (891)
T PRK09405         77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSA--TLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIYA  152 (891)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHH--HHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHHH
Confidence            455666555555555444433222111    4444443332  4556666667774      687664  47773     


Q ss_pred             -hhhcCC-CHHHHHHHHhcCCCCCCCCCCCCcccCC--CccccccccccCCCCchhhhHHHHHhhh-------cCCCCeE
Q 026778          100 -LLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS--NKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACA  168 (233)
Q Consensus       100 -~l~rG~-~~~~~l~e~~g~~~g~~~Gr~~~~H~~~--~~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vv  168 (233)
                       +...|. +.++ |.. |-+.+   .|.+.+.|...  .+-.+...++++|.+++.|+|.|++.|+       ++.++.|
T Consensus       153 ~~~l~G~l~~e~-L~~-fR~~~---~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv  227 (891)
T PRK09405        153 RAFLEGRLTEEQ-LDN-FRQEV---DGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKV  227 (891)
T ss_pred             HHHHcCCCCHHH-HHH-hcCCC---CCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceE
Confidence             344674 5555 433 44442   23334444322  1223566789999999999999999994       5567899


Q ss_pred             EEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCCcccccccccccc-CCCchhhhcc
Q 026778          169 VTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SIPSLPCLSN  226 (233)
Q Consensus       169 v~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~-~~~~~~~~~~  226 (233)
                      +|++|||++.||..|||+.+|+.++| ++|||+++|..++..|++.... .+++.+++.+
T Consensus       228 ~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a  287 (891)
T PRK09405        228 WAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRG  287 (891)
T ss_pred             EEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhh
Confidence            99999999999999999999999999 6999999999999999987543 6788888754

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=99.49  E-value=2.5e-13  Score=131.59  Aligned_cols=171  Identities=19%  Similarity=0.202  Sum_probs=120.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHh-cCcccccccCcchHHHHHHHHhccC-CCCeEec--CCccchhhh
Q 026778           26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLL  101 (233)
Q Consensus        26 ~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r-~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~--~yR~~~~~l  101 (233)
                      .|++.+.+|.++|.++-+.+   |.+   +.+... .|  |-.-++.|-=-..+|+...++ |.|.++-  .|....|-+
T Consensus        10 ~P~dLk~ls~~eL~~La~Ei---R~~---li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi   81 (627)
T COG1154          10 SPADLKKLSIEELPQLADEI---REF---LLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI   81 (627)
T ss_pred             CHHHHhhCCHHHHHHHHHHH---HHH---HHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence            34566778888888876654   533   222222 22  344566666556788888886 8888764  578888888


Q ss_pred             hcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhh
Q 026778          102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD  181 (233)
Q Consensus       102 ~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~  181 (233)
                      ..|..  +-|..+-.+.     |-.|-.-....++..+ .+|+-+++++.|+|+|.|..++++++.+|+++||||++-|+
T Consensus        82 LTGR~--e~f~tlRq~~-----GlsGf~~r~ESe~D~f-~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm  153 (627)
T COG1154          82 LTGRR--EQFDTLRQKD-----GLSGFPKREESEHDWF-GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM  153 (627)
T ss_pred             hcCch--hhcchhhhcC-----CCCCCCCcccCCCccc-ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence            87754  2232222221     1111100111234443 68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HcCCCEEEEEecCCcccccccc
Q 026778          182 FHAALNFSA-VTEAPVIFICRNNGWAISTPIS  212 (233)
Q Consensus       182 ~~Ealn~A~-~~~lPvvfvv~nN~~ais~~~~  212 (233)
                      .+||||.|+ ..+-|+|+|++||+++||.++.
T Consensus       154 A~EALN~ag~~~~~~~iVILNDNeMSIs~nvG  185 (627)
T COG1154         154 AFEALNNAGADLKSNLIVILNDNEMSISPNVG  185 (627)
T ss_pred             HHHHHhhhhhccCCCEEEEEeCCCcccCCCcc
Confidence            999999998 5567999999999999998754

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=5.1e-13  Score=130.14  Aligned_cols=172  Identities=19%  Similarity=0.192  Sum_probs=121.4

Q ss_pred             HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchhhh------hcC--CCH
Q 026778           45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGVLL------WRG--FSM  107 (233)
Q Consensus        45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~~l------~rG--~~~  107 (233)
                      .-.+|.+-..+.+.-..|.-|.-.++.  +.+.+-....|+  |       .|-++.+. +||-+|      ..|  +++
T Consensus        10 ~naiR~Ls~davqkAnSGHPG~pmG~A--~ia~~L~~~~l~~nP~nP~W~nRDRFVLSa-GHgSmllYsllhl~Gy~ls~   86 (663)
T COG0021          10 ANAIRFLSMDAVQKANSGHPGAPMGAA--DIAYVLWTRFLKHNPDNPKWINRDRFVLSA-GHGSMLLYSLLHLTGYDLSL   86 (663)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCccHH--HHHHHHHHHHhcCCCCCCCCCCCccEEecC-CchhHHHHHHHHHccCCCCH
Confidence            345677776666665666544322221  333344444453  3       36677773 787433      235  466


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccC-CCccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCc
Q 026778          108 QEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGG  176 (233)
Q Consensus       108 ~~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~  176 (233)
                      +++.. +...      |.--|.|.- ....|+..++||||++++.|||+|+|.|+...          |..|+|++|||.
T Consensus        87 edLk~-FRQ~------~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGc  159 (663)
T COG0021          87 EDLKN-FRQL------GSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGC  159 (663)
T ss_pred             HHHHh-hccC------CCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCch
Confidence            66543 2211      122355653 33578999999999999999999999987532          458999999999


Q ss_pred             cchhhHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCCCchhhhccc
Q 026778          177 TSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSIPSLPCLSNI  227 (233)
Q Consensus       177 ~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~  227 (233)
                      ++||..|||..+|++++| .+|++.++|+.+|..+++..+ .++.++|+.++
T Consensus       160 lmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAy  210 (663)
T COG0021         160 LMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAY  210 (663)
T ss_pred             HhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhc
Confidence            999999999999999999 589999999999999998887 88888887653

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.44  E-value=1.4e-12  Score=129.58  Aligned_cols=167  Identities=9%  Similarity=0.035  Sum_probs=122.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHH--hcCcccccccCcchHHHHHHHHhccC-CCCeEec--CCccchhhh
Q 026778           27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ--RQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLL  101 (233)
Q Consensus        27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~--r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~--~yR~~~~~l  101 (233)
                      |.+.+.++.++|.+|-..+   |.+   +.+..  +.|  |-..++.|-=-..+|+...++ |.|.++-  .|....|-|
T Consensus        85 P~dlk~L~~~eL~~La~Ei---R~~---li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKi  156 (701)
T PLN02225         85 PLQLKNLSVKELKLLADEI---RTE---LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKV  156 (701)
T ss_pred             HHHHhhCCHHHHHHHHHHH---HHH---HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhH
Confidence            3455677778877776655   543   22222  222  344567776666788888886 8898874  588888888


Q ss_pred             hcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhh
Q 026778          102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD  181 (233)
Q Consensus       102 ~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~  181 (233)
                      ..|.-- + |.  . |..+   |-.|-......++-.+ .+|+-+++++.|+|+|.|..++++++.+|++||||+++.|+
T Consensus       157 LTGR~~-~-f~--~-Rq~~---GlsGf~~r~ES~~D~f-~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGm  227 (701)
T PLN02225        157 LTRRWS-A-IP--S-RQKN---GISGVTSQLESEYDSF-GTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQ  227 (701)
T ss_pred             hcCChh-h-cC--c-cccC---CcCCCCCCCCCCCCCC-CCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhh
Confidence            888541 1 21  1 2221   2222111122234444 67999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEecCCcccccc
Q 026778          182 FHAALNFSAVTEAPVIFICRNNGWAISTP  210 (233)
Q Consensus       182 ~~Ealn~A~~~~lPvvfvv~nN~~ais~~  210 (233)
                      .+||||.|+..+-++|+|++||+++|+.+
T Consensus       228 a~EaLN~~g~~~~~livILNDN~mSi~~n  256 (701)
T PLN02225        228 AYEAMSNAGYLDSNMIVILNDSRHSLHPN  256 (701)
T ss_pred             HHHHHhhhhccCCCEEEEEeCCCCCCCCC
Confidence            99999999999999999999999999987

>PRK05261 putative phosphoketolase; Provisional

Probab=99.28  E-value=1.7e-11  Score=123.14  Aligned_cols=157  Identities=19%  Similarity=0.223  Sum_probs=114.5

Q ss_pred             ccccccCcchHHHHHHHHhccCCC--CeEecCCccchhh------hhcC--------CCHHHH-HHHHhcCCCCCCCCCC
Q 026778           64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGVL------LWRG--------FSMQEF-ANQCFGNKADYGKGRQ  126 (233)
Q Consensus        64 i~~~~~~~GqEa~~vg~~~aL~~~--D~~~~~yR~~~~~------l~rG--------~~~~~~-l~e~~g~~~g~~~Gr~  126 (233)
                      +|-|-++.|+-.+-+.+....++.  |.++-.=-+||..      ..-|        ++.++. |..+|-+-+.  .| +
T Consensus        49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~--pg-g  125 (785)
T PRK05261         49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSF--PG-G  125 (785)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccC--CC-C
Confidence            466777888888766666556654  6544443466632      2245        333331 2222222211  12 4


Q ss_pred             CCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH---HHHHHHHHHcCCC-EEEEEec
Q 026778          127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEAP-VIFICRN  202 (233)
Q Consensus       127 ~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~---~Ealn~A~~~~lP-vvfvv~n  202 (233)
                      .+.|......|+...+|++|+++++|+|+|+.    +.+.+++|++|||+.++|.+   |++.+++..+++. |+.|+++
T Consensus       126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~  201 (785)
T PRK05261        126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL  201 (785)
T ss_pred             cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence            67888777789999999999999999999964    46789999999999999984   9999999999885 7888899


Q ss_pred             CCcccccccccc-ccCCCchhhhccc
Q 026778          203 NGWAISTPISDQ-FRSIPSLPCLSNI  227 (233)
Q Consensus       203 N~~ais~~~~~q-~~~~~~~~~~~~~  227 (233)
                      |+|+|++|+..+ +..+++.++++++
T Consensus       202 Ng~~Is~pt~~~~~~~e~l~~rf~g~  227 (785)
T PRK05261        202 NGYKIANPTILARISDEELEALFRGY  227 (785)
T ss_pred             cCCcCCCCccccccCcHhHHHHHHHC
Confidence            999999999965 5568899999873

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=99.16  E-value=3e-11  Score=98.64  Aligned_cols=68  Identities=31%  Similarity=0.271  Sum_probs=58.4

Q ss_pred             cccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccc
Q 026778          138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI  211 (233)
Q Consensus       138 ~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~  211 (233)
                      +....+++|.++|.|+|++++.+    ++.++|++|||++.+  .++++++|..+++|+++||.||++..+++.
T Consensus        41 ~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~  108 (168)
T cd00568          41 TSTGFGAMGYGLPAAIGAALAAP----DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRM  108 (168)
T ss_pred             eCCCchhhhhhHHHHHHHHHhCC----CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHH
Confidence            44567899999999999999875    678999999999998  479999999999999999988886665543

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=99.01  E-value=4.2e-10  Score=93.59  Aligned_cols=62  Identities=32%  Similarity=0.295  Sum_probs=54.3

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP  210 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~~  210 (233)
                      +.+|.++|.|+|+++|.+    ++.++|++|||++..+.  +.|++|..+++|+++||.||+ |++...
T Consensus        49 g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~  111 (178)
T cd02002          49 GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRS  111 (178)
T ss_pred             ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHH
Confidence            889999999999999863    67899999999999884  679999999999988887775 998753

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=98.97  E-value=1.8e-09  Score=89.61  Aligned_cols=67  Identities=24%  Similarity=0.275  Sum_probs=52.6

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEec-CCccccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPISD  213 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~n-N~~ais~~~~~  213 (233)
                      ..+.+|.++|.|+|++++.    +++.|+|++|||++...  .+.|++|+.++||+++||.| |+|++.....+
T Consensus        46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~  113 (172)
T cd02004          46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ  113 (172)
T ss_pred             CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhh
Confidence            4567888888888777775    47889999999999976  57799999999998776655 57988765433

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=98.77  E-value=1.2e-08  Score=85.44  Aligned_cols=63  Identities=27%  Similarity=0.337  Sum_probs=51.0

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      ..+.+|.++|.|+|+++|.    .++.++|++|||++..+ +.| |..|..+++|+++||.|| +|++..
T Consensus        49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~  112 (178)
T cd02014          49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIK  112 (178)
T ss_pred             CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHH
Confidence            3467888888888877764    46789999999999999 566 788999999998888777 588743

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=98.70  E-value=2.8e-08  Score=96.14  Aligned_cols=63  Identities=32%  Similarity=0.394  Sum_probs=54.0

Q ss_pred             cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778          140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS  208 (233)
Q Consensus       140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais  208 (233)
                      +.+|.+|.++|.|+|+++|.    .++.++|++|||++..+  .+.|++|..+++|+++||.||+ |++.
T Consensus       404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~  467 (530)
T PRK07092        404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGAL  467 (530)
T ss_pred             cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHH
Confidence            34688999999999999885    36789999999999998  4889999999999988887776 9874

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=98.68  E-value=2.9e-08  Score=83.57  Aligned_cols=60  Identities=30%  Similarity=0.363  Sum_probs=48.3

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI  207 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai  207 (233)
                      .+.+|.++|.|+|+++|.    +++.|+|++|||+....  ...|.+|+.+++|+++||.||+ |++
T Consensus        49 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~  109 (186)
T cd02015          49 LGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGM  109 (186)
T ss_pred             ccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHH
Confidence            467888888888888775    46789999999999875  4559999999999888776664 654

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=98.68  E-value=4.4e-08  Score=82.10  Aligned_cols=63  Identities=19%  Similarity=0.203  Sum_probs=50.1

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      ..+.+|.++|.|+|+++|.+    ++.|+|++|||++.... ++.|.+|..+++|+++||-|| .|++.
T Consensus        49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~  112 (178)
T cd02008          49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMT  112 (178)
T ss_pred             ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceecc
Confidence            46889999999999998864    66799999999996532 688889999999986666555 67654

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=98.67  E-value=2.5e-08  Score=84.98  Aligned_cols=62  Identities=24%  Similarity=0.323  Sum_probs=49.6

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIST  209 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~  209 (233)
                      .+.+|.++|.|+|+++|.    .++.|+|++|||+....  ...|.+|+.+++|+++|| +|++|++..
T Consensus        52 ~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~  114 (196)
T cd02013          52 FGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEK  114 (196)
T ss_pred             CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHH
Confidence            467888888888887774    46789999999999996  345778999999987776 666788654

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

Probab=98.65  E-value=3.4e-08  Score=83.35  Aligned_cols=63  Identities=27%  Similarity=0.391  Sum_probs=50.0

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCE-EEEEecCCccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAIST  209 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPv-vfvv~nN~~ais~  209 (233)
                      ..+.+|.++|.|+|+++|.+    ++.|+|++|||++.. .++| |.+|+.+++|+ ++|++||+|++..
T Consensus        48 ~~g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~  111 (183)
T cd02005          48 LWGSIGYSVPAALGAALAAP----DRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIER  111 (183)
T ss_pred             chhhHhhhHHHHHHHHHhCC----CCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEE
Confidence            45788988998888888753    578999999999966 5677 66899999996 5555777898754

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=98.61  E-value=4.6e-08  Score=82.43  Aligned_cols=62  Identities=18%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CE-EEEEecCCcccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PV-IFICRNNGWAISTP  210 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pv-vfvv~nN~~ais~~  210 (233)
                      .+++|.++|.|+|+|+|.+     +.|+|++|||++...  ...+.+|..+++ |+ ++|++||+|++...
T Consensus        41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~  104 (179)
T cd03372          41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGN  104 (179)
T ss_pred             ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCC
Confidence            6889999999999999965     679999999999544  245667778885 66 55568888998643

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)

Probab=98.52  E-value=1.4e-07  Score=80.68  Aligned_cols=63  Identities=24%  Similarity=0.178  Sum_probs=50.2

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      ..|.+|.++|.|+|+++|.    .++.|||++|||+.....  ..|.+|..+++|+++||-|| +|++..
T Consensus        55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~lpviivV~NN~~yg~~~  118 (202)
T cd02006          55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFMI--EELAVGAQHRIPYIHVLVNNAYLGLIR  118 (202)
T ss_pred             CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhccH--HHHHHHHHhCCCeEEEEEeCchHHHHH
Confidence            3477888888888888775    467899999999999884  56889999999987777666 588643

E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=98.50  E-value=2.2e-07  Score=90.91  Aligned_cols=63  Identities=29%  Similarity=0.346  Sum_probs=51.7

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .+.+|.++|.|+|+++|    ..++.++|++|||++..+...+.+++|..+++|+++||.|| +|++.
T Consensus       429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~  492 (569)
T PRK08327        429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAV  492 (569)
T ss_pred             CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccc
Confidence            46777777777776665    45789999999999999876778999999999998888777 68864

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=98.49  E-value=1.5e-07  Score=79.63  Aligned_cols=61  Identities=18%  Similarity=0.208  Sum_probs=49.9

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcC-CCEEEEEecC-Cccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRNN-GWAIST  209 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~-lPvvfvv~nN-~~ais~  209 (233)
                      .|.+|.++|.|+|+++|.     ++.|+|++|||++..+.  +.|.+|+.++ +|+++||.|| +|++-.
T Consensus        41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~  103 (181)
T TIGR03846        41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTG  103 (181)
T ss_pred             ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCcccccc
Confidence            678999999999999885     56799999999998774  6688999999 5998877666 587743

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=98.47  E-value=3.5e-07  Score=78.46  Aligned_cols=63  Identities=17%  Similarity=0.238  Sum_probs=46.8

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIST  209 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~  209 (233)
                      ..+.+|.++|.|+|+++|    ..++.+||++|||+...+.  ..|.+|..+++|+++|| +||+|++-.
T Consensus        46 ~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~  109 (205)
T cd02003          46 GYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCIN  109 (205)
T ss_pred             CcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHH
Confidence            345677777777776666    4577899999999999863  46888999999975555 566787643

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=98.46  E-value=1.2e-07  Score=77.09  Aligned_cols=64  Identities=30%  Similarity=0.399  Sum_probs=51.0

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP  210 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~  210 (233)
                      ..+.+|.++|.|+|+++|    .+++.++|++|||+....  ...|.+|..+++|+++||-|| .|++...
T Consensus        26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~   90 (153)
T PF02775_consen   26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGG   90 (153)
T ss_dssp             TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHH
T ss_pred             CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEecc
Confidence            567788888888888886    457899999999999888  566889999999987777666 5766543

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=98.45  E-value=2.7e-07  Score=90.04  Aligned_cols=62  Identities=26%  Similarity=0.322  Sum_probs=51.6

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST  209 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~  209 (233)
                      .|.+|.++|.|+|+++|.    .++.|+|++|||++... +.| |.+|..+++|+++||.||+ |++..
T Consensus       418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~  480 (564)
T PRK08155        418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVH  480 (564)
T ss_pred             cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccH
Confidence            368899999999988885    36789999999999986 555 8899999999988887775 88754

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=98.42  E-value=3.3e-07  Score=75.79  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc-CCCEEEEE-ecCCcccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~-~lPvvfvv-~nN~~ais  208 (233)
                      .+.+|.++|.|+|+++|.+     +.|+|+.|||++....  ..|.+++.+ ++|+++|| +|+.|++.
T Consensus        41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~m~~--~el~t~~~~~~~~i~~vV~nN~~~g~~  102 (157)
T cd02001          41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLLMNP--GVLLTAGEFTPLNLILVVLDNRAYGST  102 (157)
T ss_pred             ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHHhcc--cHHHHHHHhcCCCEEEEEEeCcccccc
Confidence            7889999999999999863     6799999999995542  337788888 59987777 55568764

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>PRK07524 hypothetical protein; Provisional

Probab=98.41  E-value=2.9e-07  Score=89.15  Aligned_cols=61  Identities=30%  Similarity=0.433  Sum_probs=50.4

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .|.+|.++|.|+|+++|.    .++.|+|++|||++... +.| |.+|..+++|+++||.|| +|++.
T Consensus       406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i  467 (535)
T PRK07524        406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEI  467 (535)
T ss_pred             cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHH
Confidence            478888888888888874    56789999999999765 444 999999999998877777 78754

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=98.40  E-value=3.6e-07  Score=76.75  Aligned_cols=62  Identities=26%  Similarity=0.430  Sum_probs=49.6

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      ..+.+|.++|.|+|+++|.    .++.|+|++|||+.....  ..|.+|..+++|+++|| +|++|++.
T Consensus        46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~~--~eL~ta~~~~l~vi~vV~NN~~~g~~  108 (177)
T cd02010          46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNS--QELETAVRLKIPLVVLIWNDNGYGLI  108 (177)
T ss_pred             CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhHH--HHHHHHHHHCCCeEEEEEECCcchHH
Confidence            4577899899998888874    467899999999997663  56888999999987766 55578875

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=98.38  E-value=1.1e-05  Score=82.72  Aligned_cols=198  Identities=16%  Similarity=0.133  Sum_probs=130.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHHHHH-hcCcccccccCcchHHHHHHHHhccC------CCCeEec-CCccchhhh
Q 026778           30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ-RQGRISFYLTTSGEEAINIASAAAIK------NDDFVVP-QYREPGVLL  101 (233)
Q Consensus        30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~-r~G~i~~~~~~~GqEa~~vg~~~aL~------~~D~~~~-~yR~~~~~l  101 (233)
                      ....+.++.+.+.+++.-.-.||.-+...+ .|.    -++-.|-|.+-..+-..|.      -+.+++. .||+.=-.|
T Consensus       487 ~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqk----RFslEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVL  562 (1228)
T PRK12270        487 HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQK----RFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVL  562 (1228)
T ss_pred             CCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccce----eeeecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHH
Confidence            456789999999999988888887654433 222    2445666765433333332      2345554 589877666


Q ss_pred             h--cCCCHHHHHHHHhcCCCCCCCCCCC--CcccCCCc-----------cccccccccCCCCchhhhHHHHHhhhc---C
Q 026778          102 W--RGFSMQEFANQCFGNKADYGKGRQM--PIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMD---R  163 (233)
Q Consensus       102 ~--rG~~~~~~l~e~~g~~~g~~~Gr~~--~~H~~~~~-----------~~~~~~~g~lG~~~~~A~G~A~a~k~~---~  163 (233)
                      +  -|.+..+++.|+=|+-+..+....|  -.|.+...           ..+....++|-.-=|..-|++-|.+-.   +
T Consensus       563 ani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g  642 (1228)
T PRK12270        563 ANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKG  642 (1228)
T ss_pred             HHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhccc
Confidence            6  5999999999999987543322222  23433221           112223355666667778988886532   1


Q ss_pred             C---CCeEEEEEcCCc-cchhhHHHHHHHHHHcCCC---EEEEEecCCccccccccccccC--CCchhhhccccccc
Q 026778          164 K---DACAVTYFGDGG-TSEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRS--IPSLPCLSNILTIL  231 (233)
Q Consensus       164 ~---~~vvv~~~GDG~-~~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~~~~~q~~~--~~~~~~~~~~~~~~  231 (233)
                      .   .-..+++.||.+ ..||.++|.||+|..|++|   +|+||.||++++.|..+..-..  -+=.+|...+|.+-
T Consensus       643 ~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~Pifh  719 (1228)
T PRK12270        643 EEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFH  719 (1228)
T ss_pred             ccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEe
Confidence            1   235689999999 7999999999999999999   9999999999999986633222  11234455666543

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=98.37  E-value=4.5e-07  Score=88.56  Aligned_cols=61  Identities=26%  Similarity=0.401  Sum_probs=51.1

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI  207 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai  207 (233)
                      ..|.+|.++|.|+|+++|.    .++.|+|++|||++...  -+.|.+|..+++|+++||.||+ |++
T Consensus       419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~  480 (574)
T PRK06882        419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGM  480 (574)
T ss_pred             CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHH
Confidence            3577999999999998885    36689999999999887  3789999999999988887775 654

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins

Probab=98.37  E-value=4.2e-07  Score=77.28  Aligned_cols=61  Identities=23%  Similarity=0.165  Sum_probs=48.4

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN-~~ais  208 (233)
                      +|.+|.++|.|+|+++|..    ++.|+|++|||++...  .+.|.+|+.+++ |+++||.|| +|++.
T Consensus        47 ~g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~  109 (188)
T cd03371          47 VGSMGHASQIALGIALARP----DRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSV  109 (188)
T ss_pred             cCccccHHHHHHHHHHhCC----CCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhcc
Confidence            4889999999999998863    5679999999999764  466899999997 676666555 57764

PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=98.36  E-value=6.5e-07  Score=87.74  Aligned_cols=61  Identities=23%  Similarity=0.284  Sum_probs=49.6

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais  208 (233)
                      .|.+|.++|.|+|+++|.    .++.|+|++|||++... + ..|.+|..+++|++|||.||+ |++.
T Consensus       421 ~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~-~el~Ta~~~~lpi~~vV~NN~~~~~~  482 (570)
T PRK06725        421 LGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-I-QELQTIAENNIPVKVFIINNKFLGMV  482 (570)
T ss_pred             cccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-H-HHHHHHHHhCCCeEEEEEECCccHHH
Confidence            378899999998888874    46789999999999755 3 448899999999988887775 6553

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=98.34  E-value=7.2e-07  Score=86.91  Aligned_cols=60  Identities=27%  Similarity=0.375  Sum_probs=46.8

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI  207 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai  207 (233)
                      .|.+|.++|.|+|++++    ..++.|+|++|||++...  .+.|.+|+.+++|+++||.||+ |++
T Consensus       414 ~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~  474 (557)
T PRK08199        414 SGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGT  474 (557)
T ss_pred             CccccchHHHHHHHHHh----CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchH
Confidence            45666666666665555    457889999999998865  4779999999999999888876 774

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=98.31  E-value=3.8e-07  Score=76.31  Aligned_cols=59  Identities=27%  Similarity=0.219  Sum_probs=47.5

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      +.+|.++|.|+|+++|.     ++.|||++|||+....  -..|.+|..+++|+++||-|| .|++-
T Consensus        51 g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~  110 (175)
T cd02009          51 SGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIF  110 (175)
T ss_pred             cchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchh
Confidence            66888999999999884     5679999999999887  366888999999987666555 58753

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>PRK06163 hypothetical protein; Provisional

Probab=98.31  E-value=8.6e-07  Score=76.46  Aligned_cols=61  Identities=23%  Similarity=0.259  Sum_probs=47.8

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc-CCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~-~lPvvfvv~nN-~~ais  208 (233)
                      .+.+|.++|.|+|+++|.    .++.|||++|||+.....  ..|.+|+.+ ++|+++||-|| .|++.
T Consensus        56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~~lpi~ivV~NN~~yg~~  118 (202)
T PRK06163         56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQL--GALGTIAALAPKNLTIIVMDNGVYQIT  118 (202)
T ss_pred             ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHHH--HHHHHHHHhcCCCeEEEEEcCCchhhc
Confidence            577999999999998885    467799999999987663  457778776 68987777666 68863

>PRK08266 hypothetical protein; Provisional

Probab=98.29  E-value=9.1e-07  Score=85.76  Aligned_cols=61  Identities=28%  Similarity=0.331  Sum_probs=49.8

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .|.+|.++|.|+|++++.    .++.++|++|||++..+  .+.|.+|..++||+++||-|| +|++.
T Consensus       401 ~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~  462 (542)
T PRK08266        401 QGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNV  462 (542)
T ss_pred             CcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHH
Confidence            467888888888776664    56789999999999998  578999999999988877666 68754

>PRK07586 hypothetical protein; Validated

Probab=98.28  E-value=1.1e-06  Score=84.73  Aligned_cols=61  Identities=31%  Similarity=0.303  Sum_probs=48.3

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      .+.+|.++|.|+|+++|.    .++.|+|++|||++...  ...|.+|..+++|+++|| +|++|++-
T Consensus       384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~  445 (514)
T PRK07586        384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAIL  445 (514)
T ss_pred             CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHH
Confidence            467777777777777774    47789999999999987  467999999999976666 55568864

>PRK07064 hypothetical protein; Provisional

Probab=98.28  E-value=1.3e-06  Score=84.59  Aligned_cols=65  Identities=25%  Similarity=0.334  Sum_probs=50.9

Q ss_pred             cccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       138 ~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      +.+..+.+|.++|.|+|+++|.    .++.++|++|||++....  ..|.+|..+++|+++||-|| +|++-
T Consensus       400 ~~~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~yg~~  465 (544)
T PRK07064        400 VHALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLNL--GELATAVQENANMVIVLMNDGGYGVI  465 (544)
T ss_pred             eccCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhhH--HHHHHHHHhCCCeEEEEEeCChhHHH
Confidence            3333467888888888888874    467899999999998874  67999999999987766555 68764

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=98.27  E-value=1.3e-06  Score=85.19  Aligned_cols=60  Identities=30%  Similarity=0.396  Sum_probs=48.7

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      +.+|.++|.|+|+++|.    .++.|+|++|||++... +.| |.+|..++||+++||-|| +|++.
T Consensus       414 g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i  474 (563)
T PRK08527        414 GTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMV  474 (563)
T ss_pred             ccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhH
Confidence            78888888888888875    35679999999999986 344 899999999988777666 56653

>PRK12474 hypothetical protein; Provisional

Probab=98.27  E-value=1.4e-06  Score=84.15  Aligned_cols=62  Identities=34%  Similarity=0.320  Sum_probs=50.0

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      ..|.+|.++|.|+|+++|.    .++.|+|++|||++....  .-|.+|..+++|+++||-|| +|++-
T Consensus       387 ~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~~--qEL~Ta~r~~lpv~iiV~NN~~y~~i  449 (518)
T PRK12474        387 TGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYTM--QALWTMARENLDVTVVIFANRSYAIL  449 (518)
T ss_pred             CCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcchH--HHHHHHHHHCCCcEEEEEcCCcchHH
Confidence            3477888888888888775    467899999999999884  66999999999987777666 58764

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=98.26  E-value=1.3e-06  Score=85.34  Aligned_cols=60  Identities=30%  Similarity=0.416  Sum_probs=48.7

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      |++|.++|.|+|+++|.    .++.|+|++|||++... +.| |++|..+++|+++||-|| +|++-
T Consensus       424 g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i  484 (571)
T PRK07710        424 GTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMV  484 (571)
T ss_pred             ccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHH
Confidence            67888888888888874    46789999999999985 455 999999999987766555 68764

>PRK11269 glyoxylate carboligase; Provisional

Probab=98.25  E-value=1.1e-06  Score=86.25  Aligned_cols=62  Identities=23%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais  208 (233)
                      ..|++|.++|.|+|+++|.    .++.|||++|||++....  ..|.+|..+++|+++||-||+ |++-
T Consensus       417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~lpv~~vV~NN~~~g~i  479 (591)
T PRK11269        417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFLI--EELAVGAQFNLPYIHVLVNNAYLGLI  479 (591)
T ss_pred             ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcCH--HHHHHHHHhCCCeEEEEEeCCchhHH
Confidence            3577888888888888874    467899999999998873  459999999999888776665 7753

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=98.23  E-value=1.7e-06  Score=84.90  Aligned_cols=62  Identities=29%  Similarity=0.359  Sum_probs=50.0

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      ..|.+|.++|.|+|+++|.    .++.|+|++|||++..+  -..|.+|..+++|+++||.|| +|++.
T Consensus       406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i  468 (578)
T PRK06546        406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMV  468 (578)
T ss_pred             CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccH
Confidence            3477888888888888875    46789999999999975  245899999999998888777 57754

>PRK06154 hypothetical protein; Provisional

Probab=98.21  E-value=1.6e-06  Score=84.88  Aligned_cols=61  Identities=21%  Similarity=0.262  Sum_probs=49.0

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .|.+|.++|.|+|+++|.    .++.|||++|||++....  ..|.+|..++||+++||-|| .|++-
T Consensus       430 ~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~~yg~~  491 (565)
T PRK06154        430 TTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMTG--MDFETAVRERIPILTILLNNFSMGGY  491 (565)
T ss_pred             CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECCcccee
Confidence            467787777777777764    578899999999998884  56999999999988777666 58754

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=98.21  E-value=1.6e-06  Score=84.42  Aligned_cols=60  Identities=25%  Similarity=0.326  Sum_probs=49.3

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI  207 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai  207 (233)
                      .+++|.++|.|+|+++|.    .++.|+|++|||++....  ..|.+|..+++|+++||.||+ |++
T Consensus       411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~~--~eL~ta~~~~l~~~~vv~NN~~~~~  471 (558)
T TIGR00118       411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMNL--QELSTAVQYDIPVKILILNNRYLGM  471 (558)
T ss_pred             cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEeCCchHH
Confidence            377888899999988774    467899999999999853  369999999999988888886 543

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=98.20  E-value=2.1e-06  Score=83.99  Aligned_cols=62  Identities=26%  Similarity=0.249  Sum_probs=48.1

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      ..|.+|.++|.|+|+++|.    .++.|+|++|||++....  ..|.+|..+++|+++||-|| +|++.
T Consensus       406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~i  468 (574)
T PRK09124        406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSMLM--GDFLSLVQLKLPVKIVVFNNSVLGFV  468 (574)
T ss_pred             CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhccH--HHHHHHHHhCCCeEEEEEeCCccccH
Confidence            3467788888888887775    467899999999998773  44889999999986666555 68774

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=98.19  E-value=2.4e-06  Score=84.20  Aligned_cols=60  Identities=23%  Similarity=0.249  Sum_probs=48.7

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      +.+|.++|.|+|+++|.    .++.|||++|||++...-  ..|.+|..+++|+++||-|| +|++-
T Consensus       430 gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvi~vV~NN~~y~~i  490 (595)
T PRK09107        430 GTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMCI--QEMSTAVQYNLPVKIFILNNQYMGMV  490 (595)
T ss_pred             hhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHH
Confidence            67788777777777764    567899999999999884  45999999999988877666 58753

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=98.17  E-value=3.1e-06  Score=83.18  Aligned_cols=61  Identities=26%  Similarity=0.268  Sum_probs=49.1

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .|++|.++|.|+|+++|.    .++.|||++|||+.....  ..|.+|..+++|+++||-|| .|++.
T Consensus       436 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~~--~eL~Ta~r~~lpviivV~NN~~~~~i  497 (587)
T PRK06965        436 LGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMCI--QELSTCLQYDTPVKIISLNNRYLGMV  497 (587)
T ss_pred             cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcCH--HHHHHHHHcCCCeEEEEEECCcchHH
Confidence            367888888888888775    467899999999999884  66999999999987777666 57653

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=98.16  E-value=4.1e-06  Score=82.02  Aligned_cols=59  Identities=31%  Similarity=0.460  Sum_probs=47.4

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI  207 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai  207 (233)
                      +.+|.++|.|+|+++|    ..++.|+|++|||++..  ..+.|++|..+++|+++||.||+ |++
T Consensus       437 gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~  496 (578)
T PRK06112        437 AGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGF  496 (578)
T ss_pred             cccccHHHHHHHHHhh----CCCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCC
Confidence            5677777777777766    35678999999999864  47889999999999988887775 443

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=98.16  E-value=3.5e-06  Score=71.78  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=46.3

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      +.+|.++|.|+|+++|.    .++.||++.|||+. ..+  ...|.+|..+++|+++||-|| .|++..
T Consensus        51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~  113 (193)
T cd03375          51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTK  113 (193)
T ss_pred             hhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCC
Confidence            66777777777777764    57889999999994 444  456889999999988777666 577644

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]

Probab=98.16  E-value=2.6e-06  Score=82.14  Aligned_cols=73  Identities=26%  Similarity=0.402  Sum_probs=58.8

Q ss_pred             cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCC
Q 026778          140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSI  218 (233)
Q Consensus       140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~  218 (233)
                      +-.|+||..+|.|.|.++|.+    ++.++.|+|||+.+.-.  +-+..--+|+| |+|||++|++|.|..-.+..+...
T Consensus       408 ~lWGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~QlTv--QEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~Y  481 (557)
T COG3961         408 PLWGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQLTV--QEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPY  481 (557)
T ss_pred             cchhhcccccHhhhhhhhcCC----CccEEEEEcCchhhhhH--HHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCc
Confidence            456788888888888888874    68899999999998873  34777888999 699999999999987777644433

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=98.16  E-value=1.8e-06  Score=76.01  Aligned_cols=61  Identities=30%  Similarity=0.457  Sum_probs=46.1

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAI  207 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai  207 (233)
                      ..+++|.++|.|+|++.    ...++.|||++|||++ ..+  ...|..|..+++|+++||-||+ |++
T Consensus        60 ~~gsmG~GlpaAiGa~~----a~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~  122 (235)
T cd03376          60 NAAAVASGIEAALKALG----RGKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMN  122 (235)
T ss_pred             CHHHHHHHHHHHHHHhc----cCCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCccccc
Confidence            34567777777776644    3456789999999995 555  4569999999999988887775 773

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=98.15  E-value=2.6e-06  Score=83.68  Aligned_cols=61  Identities=25%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI  207 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai  207 (233)
                      ..|.+|.++|.|+|+++|.    +++.|+|+.|||++...  -..|.+|..+++|+++||.||+ |.+
T Consensus       428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~~y~~  489 (585)
T CHL00099        428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN--LQELGTIAQYNLPIKIIIINNKWQGM  489 (585)
T ss_pred             cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECCcchH
Confidence            3477888888888888875    36789999999999877  3668999999999988887775 654

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=98.14  E-value=3.7e-06  Score=82.19  Aligned_cols=57  Identities=19%  Similarity=0.159  Sum_probs=48.4

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG  204 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~  204 (233)
                      ..|.+|.++|.|+|+++|.     ++.|+|++|||+....-  ..|.+|..+++|+++||-||+
T Consensus       422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~  478 (569)
T PRK09259        422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFSG--MEVETICRYNLPVTVVIFNNG  478 (569)
T ss_pred             CCccccccHHHHHHHHhcC-----CCcEEEEecCccccccH--HHHHHHHHcCCCEEEEEEeCh
Confidence            3488999999999999882     56799999999999884  349999999999988887776

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=98.14  E-value=3.7e-06  Score=82.27  Aligned_cols=59  Identities=29%  Similarity=0.372  Sum_probs=48.5

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAI  207 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ai  207 (233)
                      +++|.++|.|+|+++|.    .++.|||++|||++...  -..|.+|..++||+++||-|| +|++
T Consensus       421 g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~  480 (574)
T PRK07979        421 GTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGM  480 (574)
T ss_pred             cchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhH
Confidence            77888888888888774    46689999999999988  366999999999988777666 5775

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=98.14  E-value=2.7e-06  Score=83.73  Aligned_cols=61  Identities=21%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .|++|.++|.|+|+++|.    .++.||+++|||++...  -..|.+|..+++|+++||-|| +|++.
T Consensus       417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i  478 (588)
T TIGR01504       417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLI  478 (588)
T ss_pred             cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHH
Confidence            366777777777777774    56789999999999888  356999999999987766555 68754

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=98.12  E-value=4.6e-06  Score=81.26  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=48.2

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-c
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W  205 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~  205 (233)
                      .|.+|.++|.|+|+++|.     ++.|||++|||++....  ..|.+|+.+++|+++||-||+ |
T Consensus       416 ~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~~--~EL~Ta~r~~l~v~~vV~NN~~~  473 (554)
T TIGR03254       416 WGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFSG--MEVETICRYNLPVCVVIFNNGGI  473 (554)
T ss_pred             CCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhcccH--HHHHHHHHcCCCEEEEEEeChhh
Confidence            478999999999999872     57799999999999884  349999999999988887775 5

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=98.12  E-value=3.9e-06  Score=75.86  Aligned_cols=62  Identities=27%  Similarity=0.417  Sum_probs=49.2

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST  209 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~  209 (233)
                      .+..|.++|.|+|+++|.    .+..||++.||| +...|.  ..|..|..+++|+++||-||+ |++..
T Consensus        58 ~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtg  121 (279)
T PRK11866         58 HGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTT  121 (279)
T ss_pred             ccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhc
Confidence            455688888888888884    467799999999 688884  448999999999988887774 66644

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=98.11  E-value=2.3e-06  Score=83.13  Aligned_cols=61  Identities=23%  Similarity=0.317  Sum_probs=47.9

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      .+.+|.++|.|+|+++|.    .++.|+|++|||+.....  ..|.+|..+++|+++|| +|++|++-
T Consensus       403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~~--~EL~Ta~~~~lpi~~vV~NN~~y~~i  464 (539)
T TIGR03393       403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLTI--QELGSMLRDKQHPIILVLNNEGYTVE  464 (539)
T ss_pred             hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhHH--HHHHHHHHcCCCCEEEEEeCCceEEE
Confidence            467777777777777764    577899999999998884  66999999999976666 55578764

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>PLN02573 pyruvate decarboxylase

Probab=98.11  E-value=2.9e-06  Score=83.34  Aligned_cols=62  Identities=21%  Similarity=0.249  Sum_probs=50.0

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      .|++|.++|.|+|+++|.    .++.|||++|||++....  ..|.+|..+++|+++||-|| +|++..
T Consensus       427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~~--~EL~Ta~r~~lpvv~vV~NN~~yg~~~  489 (578)
T PLN02573        427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVTA--QDVSTMIRCGQKSIIFLINNGGYTIEV  489 (578)
T ss_pred             hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhHH--HHHHHHHHcCCCCEEEEEeCCceeEEE
Confidence            477888888888888775    467899999999999884  56999999999987766555 688643

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=98.10  E-value=3.9e-06  Score=82.13  Aligned_cols=61  Identities=25%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .|++|.++|.|+|+++|.    .++.|||++|||+....-  ..|.+|..+++|+++||-|| +|++-
T Consensus       422 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~~--~eL~Ta~r~~lpv~ivV~NN~~y~~i  483 (574)
T PRK06466        422 LGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMNI--QELSTCLQYGLPVKIINLNNGALGMV  483 (574)
T ss_pred             cchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCccHHH
Confidence            367888888888888775    467899999999999883  56899999999987766555 68763

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=98.09  E-value=4.8e-06  Score=80.81  Aligned_cols=61  Identities=28%  Similarity=0.403  Sum_probs=48.2

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEec-CCcccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~n-N~~ais  208 (233)
                      .+.+|.++|.|+|+++|.    .++.|+|++|||+.....  ..|.+|..+++|+++||-| ++|++-
T Consensus       407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpi~ivV~NN~~y~~~  468 (539)
T TIGR02418       407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFSS--MELETAVRLKLNIVHIIWNDNGYNMV  468 (539)
T ss_pred             ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhchH--HHHHHHHHhCCCeEEEEEECCcchHH
Confidence            467888888888888775    467799999999999873  5588999999998666655 568764

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=98.08  E-value=5.5e-06  Score=81.16  Aligned_cols=61  Identities=23%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .|.+|.++|.|+|+++|.    .++.|+|++|||++....  ..|.+|..++||+++||-|| +|++.
T Consensus       429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~~--~eL~Tavr~~lpvi~vV~NN~~yg~i  490 (579)
T TIGR03457       429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMSM--NEIMTAVRHDIPVTAVVFRNRQWGAE  490 (579)
T ss_pred             cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECcchHHH
Confidence            367888888877777774    467899999999999984  66999999999987766555 68754

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PLN02470 acetolactate synthase

Probab=98.07  E-value=5.8e-06  Score=81.15  Aligned_cols=60  Identities=32%  Similarity=0.316  Sum_probs=48.3

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAI  207 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ai  207 (233)
                      .|.+|.++|.|+|+++|.    .++.|+|++|||+.....  ..|.+|..+++|+++||-|| +|++
T Consensus       425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~v~ivV~NN~~yg~  485 (585)
T PLN02470        425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMNI--QELATIHVENLPVKIMVLNNQHLGM  485 (585)
T ss_pred             cccccchHHHHHHHHHhC----CCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCcchH
Confidence            377888888888888775    466799999999999984  66999999999987766555 5754

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=98.07  E-value=6.1e-06  Score=80.55  Aligned_cols=60  Identities=25%  Similarity=0.341  Sum_probs=48.4

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      |.+|.++|.|+|+++|.    .++.|+|++|||++....  ..|.+|..+++|+++||-|| +|++.
T Consensus       414 g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i  474 (561)
T PRK06048        414 GTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMNS--QELATAVQNDIPVIVAILNNGYLGMV  474 (561)
T ss_pred             cccccHHHHHHHHHHhC----CCCcEEEEEeCchhhccH--HHHHHHHHcCCCeEEEEEECCccHHH
Confidence            67888888888888774    467899999999999884  56999999999987766555 68654

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=98.07  E-value=1.3e-05  Score=73.07  Aligned_cols=71  Identities=21%  Similarity=0.245  Sum_probs=61.6

Q ss_pred             ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cc
Q 026778          135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WA  206 (233)
Q Consensus       135 ~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~a  206 (233)
                      ..++...++..|.+.+.|.|++.|.+..+++..+||+.|||++..--+ ++|..|...+.++++||-||+ |+
T Consensus        61 ~~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~-~~L~~a~~r~~ni~~ivlDNe~Y~  132 (299)
T PRK11865         61 AWNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF-QSLSGAMERGHNILYLMYDNEAYM  132 (299)
T ss_pred             ccccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH-HHHHHHHHcCCCeEEEEECCcccc
Confidence            456677888999999999999999988777778999999998866555 889999999999999999996 54

>PRK08617 acetolactate synthase; Reviewed

Probab=98.06  E-value=5.4e-06  Score=80.63  Aligned_cols=61  Identities=23%  Similarity=0.297  Sum_probs=47.8

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .+.+|.++|.|+|+++|.    .++.|+|++|||++....  ..|.+|..+++|+++||-|| .|++-
T Consensus       413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~~vV~NN~~~~~~  474 (552)
T PRK08617        413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFSA--MELETAVRLKLNIVHIIWNDGHYNMV  474 (552)
T ss_pred             cccccccccHHHhhHhhc----CCCcEEEEEechHHhhhH--HHHHHHHHhCCCeEEEEEECCccchH
Confidence            467788788888777764    567899999999999884  55899999999987666555 67653

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=98.04  E-value=3.9e-06  Score=81.71  Aligned_cols=62  Identities=21%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      ..+.+|.++|.|+|+++|.     ++.+++++|||+....  -..|.+|..+++|+++||-|| +|++-.
T Consensus       401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~~~  463 (535)
T TIGR03394       401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEMLR  463 (535)
T ss_pred             ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECCccceee
Confidence            3478999999999999884     2345789999999888  356999999999987766555 688653

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=98.04  E-value=5.6e-06  Score=75.05  Aligned_cols=111  Identities=20%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             CcccccccCcchHHHHHHHHhcc-----CCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCcc
Q 026778           62 GRISFYLTTSGEEAINIASAAAI-----KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH  136 (233)
Q Consensus        62 G~i~~~~~~~GqEa~~vg~~~aL-----~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~  136 (233)
                      .+...|.++-|+-.+.-.+..+|     .|+|.++.+  +-|-.- + .+                       ++    .
T Consensus        14 ~~~~~~CpGCg~~~il~~l~~al~~l~~~p~d~vvvs--diGc~~-~-~~-----------------------~~----~   62 (286)
T PRK11867         14 DQEPRWCPGCGDGSILAALQRALAELGLDPENVAVVS--GIGCSG-R-LP-----------------------GY----I   62 (286)
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEe--CCcccc-c-cC-----------------------cc----c
Confidence            34456888889888766666666     366655544  222110 0 00                       00    1


Q ss_pred             ccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCc-cchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       137 ~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~-~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      +..+..+..|.++|.|+|+++|.    .+..|||+.|||+ ...|.-+  |..|..+++|+++||-|| .|++..
T Consensus        63 ~~~~~~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg~~e--L~tA~r~nl~i~vIV~NN~~yGmt~  131 (286)
T PRK11867         63 NTYGFHTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIGGNH--FIHALRRNIDITYILFNNQIYGLTK  131 (286)
T ss_pred             cccchhhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCCHHH--HHHHHHhCCCcEEEEEeCHHHhhhc
Confidence            11122356788888888888774    5778999999995 7777433  888999999987777666 587644

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]

Probab=98.04  E-value=0.00026  Score=70.69  Aligned_cols=73  Identities=21%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             ccccCCCCchhhhHHHHHhhhc-------CCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCCcccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMD-------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPIS  212 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~-------~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~  212 (233)
                      .++++|-+...|+=-|.-.|+.       .+++.++||+|||++.|+...+|+.+|+.++| +++|||+.|.-....|+.
T Consensus       190 pTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVr  269 (887)
T COG2609         190 PTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVR  269 (887)
T ss_pred             CcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCccc
Confidence            5566776666666555555552       35789999999999999999999999999999 689999999999988875


Q ss_pred             c
Q 026778          213 D  213 (233)
Q Consensus       213 ~  213 (233)
                      .
T Consensus       270 g  270 (887)
T COG2609         270 G  270 (887)
T ss_pred             C
Confidence            4

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=98.04  E-value=7e-06  Score=79.81  Aligned_cols=60  Identities=25%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      |.+|.++|.|+|+++|.    .++.|+|++|||+.....  ..|.+|..+++|+++|| +|++|++-
T Consensus       401 g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~l~v~ivV~NN~~~~~~  461 (548)
T PRK08978        401 GTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNV--QELGTIKRKQLPVKIVLLDNQRLGMV  461 (548)
T ss_pred             hhhhchHHHHHHHHHhC----CCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHH
Confidence            77888888888888774    467899999999999884  55999999999987666 45568764

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=98.03  E-value=9.1e-06  Score=79.61  Aligned_cols=60  Identities=28%  Similarity=0.359  Sum_probs=48.0

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      +.+|.++|.|+|+++|.    .++.|+|++|||+.....  ..|.+|..+++|+++||-|| +|++.
T Consensus       421 g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpv~~vV~NN~~y~~i  481 (572)
T PRK08979        421 GTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMNI--QELSTALQYDIPVKIINLNNRFLGMV  481 (572)
T ss_pred             ccccchhhHHHhhhhhC----CCCeEEEEEcchHhhccH--HHHHHHHHcCCCeEEEEEeCCccHHH
Confidence            57788788777777774    467899999999999884  55999999999987777555 57754

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=98.02  E-value=6.5e-06  Score=80.88  Aligned_cols=62  Identities=21%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      ..+.+|.++|.|+|+++|.    .++.|||++|||++..+ . ..|.+|..+++|+++||-|| +|++.
T Consensus       433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~-~el~Ta~~~~lpv~ivV~NN~~y~~~  495 (588)
T PRK07525        433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-M-NEVMTAVRHNWPVTAVVFRNYQWGAE  495 (588)
T ss_pred             cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-H-HHHHHHHHhCCCeEEEEEeCchhHHH
Confidence            3467888888888877774    46789999999999998 3 34779999999987777555 78753

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=98.02  E-value=7.4e-06  Score=80.96  Aligned_cols=61  Identities=23%  Similarity=0.159  Sum_probs=47.0

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .+.+|.++|.|+|+++|.    .++.|||++|||++...  -..|.+|..+++|+++||-|| .|++-
T Consensus       433 ~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~~~g~i  494 (616)
T PRK07418        433 LGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN--IQELGTLAQYGINVKTVIINNGWQGMV  494 (616)
T ss_pred             ccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECCcchHH
Confidence            366777777777776664    56789999999999987  345899999999988877666 56653

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.01  E-value=1.1e-05  Score=79.11  Aligned_cols=65  Identities=29%  Similarity=0.359  Sum_probs=49.6

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI  211 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~~~  211 (233)
                      ..|++|.++|.|+|++++.    .++.|+|+.|||+....  ..-|.+|..+++|+++||-||+ |++-...
T Consensus       406 ~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~  471 (550)
T COG0028         406 GLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQW  471 (550)
T ss_pred             CCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHH
Confidence            4556666666666665554    57889999999999988  5669999999999988887776 6665443

>PRK08611 pyruvate oxidase; Provisional

Probab=98.01  E-value=6.9e-06  Score=80.55  Aligned_cols=61  Identities=26%  Similarity=0.352  Sum_probs=47.9

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      .|.+|.++|.|+|+++|.    .++.|||++|||+....  -..|.+|..+++|+++|| +|++|++-
T Consensus       407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i  468 (576)
T PRK08611        407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFI  468 (576)
T ss_pred             chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHH
Confidence            367777777777777764    46779999999999998  466899999999976666 55568764

>PRK05858 hypothetical protein; Provisional

Probab=98.00  E-value=1.2e-05  Score=78.14  Aligned_cols=61  Identities=21%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .|.+|.++|.|+|+++|.    .++.+||++|||++...  ...|.+|..+++|+++||-|| .|++.
T Consensus       406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~  467 (542)
T PRK05858        406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLE  467 (542)
T ss_pred             ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhH
Confidence            467888888888877765    56789999999999877  356899999999987766555 68763

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=97.99  E-value=1e-05  Score=79.31  Aligned_cols=61  Identities=25%  Similarity=0.248  Sum_probs=46.6

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      .+.+|.++|.|+|+++|    ..++.|++++|||++...  -..|.+|..+++|+++|| +||+|++.
T Consensus       407 ~gsmG~glpaAiGa~la----~p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i  468 (575)
T TIGR02720       407 FATMGVGVPGAIAAKLN----YPDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFI  468 (575)
T ss_pred             cchhhchHHHHHHHHHh----CCCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence            35666666666666665    457789999999999997  455999999999987765 55569864

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=97.99  E-value=9.1e-06  Score=79.40  Aligned_cols=62  Identities=27%  Similarity=0.300  Sum_probs=49.8

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      .|.+|.++|.|+|+++|.    .++.++|++|||++....  ..|.+|..+++|+++||-|| +|++..
T Consensus       420 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~yg~i~  482 (572)
T PRK06456        420 MGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRTLGLVR  482 (572)
T ss_pred             cccccchhHHHHHHHHhC----CCCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCchHHHH
Confidence            477888888888888775    467899999999999884  56899999999987766555 688653

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=97.98  E-value=8.2e-06  Score=79.46  Aligned_cols=62  Identities=23%  Similarity=0.401  Sum_probs=48.8

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      .|.+|.++|.|+|+++|..   +++.|+|++|||++....  ..|.+|..++||+++|| +|++|++-
T Consensus       395 ~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~~~~--~eL~Ta~~~~lpi~ivV~NN~~~g~i  457 (549)
T PRK06457        395 LGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFTMTM--MELITAKKYDLPVKIIIYNNSKLGMI  457 (549)
T ss_pred             cchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHhhhH--HHHHHHHHHCCCeEEEEEECCccchH
Confidence            4778888888888887752   167899999999999884  56899999999986666 55578764

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=97.98  E-value=4.4e-06  Score=73.56  Aligned_cols=66  Identities=24%  Similarity=0.287  Sum_probs=46.3

Q ss_pred             ccccCCCCchhhhHHHHHhh-hcCCCCeEEEEEcCCccc-hhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778          141 VSSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k-~~~~~~vvv~~~GDG~~~-~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais  208 (233)
                      ..+.+|.++|.|+|+++|.- ....++.|||+.|||++. .| +.| +..+..+++|+++||-||+ |++-
T Consensus        62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~  130 (237)
T cd02018          62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNT  130 (237)
T ss_pred             CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCC
Confidence            34788888888888887721 113567899999999874 34 233 4455679999988877774 7643

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=97.97  E-value=1e-05  Score=73.24  Aligned_cols=111  Identities=15%  Similarity=0.186  Sum_probs=72.6

Q ss_pred             cCcc-cccccCcchHHHHHHHHhccC-----CCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCC
Q 026778           61 QGRI-SFYLTTSGEEAINIASAAAIK-----NDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN  134 (233)
Q Consensus        61 ~G~i-~~~~~~~GqEa~~vg~~~aL~-----~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~  134 (233)
                      .-++ ..|.++-|+=.+--++..|+.     |+|.++.+  |-|.. .+       +..++ +                 
T Consensus         3 ~~~~~~~~CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvs--diG~~-~~-------~~~~~-~-----------------   54 (280)
T PRK11869          3 PEKYDIAWCPGCGNFGIRNALMKALSELNLKPRQVVIVS--GIGQA-AK-------MPHYI-N-----------------   54 (280)
T ss_pred             cccCCCCCCcCCCCHHHHHHHHHHHHHcCCCCCCEEEEe--CchHh-hh-------HHHHc-c-----------------
Confidence            4455 478899999888777777763     56776654  22211 11       11111 0                 


Q ss_pred             ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccc-hhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778          135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAIS  208 (233)
Q Consensus       135 ~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~-~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais  208 (233)
                         .....+..|.++|.|+|+.+|    ..++.|||+.|||++. .|  -..|..|+.+++|+++||-||+ |++.
T Consensus        55 ---~~~~~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t  121 (280)
T PRK11869         55 ---VNGFHTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLT  121 (280)
T ss_pred             ---CCCCCcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhh
Confidence               001223478888888888666    4568899999999965 33  3458999999999988887774 7653

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=97.96  E-value=1.2e-05  Score=72.94  Aligned_cols=60  Identities=18%  Similarity=0.254  Sum_probs=44.8

Q ss_pred             cCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       144 ~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      ..|.++|.|+|+++|    ..+..|||+.|||+. ..|.  ..|..|+.+++|+++||-|| .|++..
T Consensus        54 ~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg~--~eL~tA~r~nl~I~vIVlNN~~yGmt~  115 (287)
T TIGR02177        54 LHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIGG--NHFVAAGRRNVDITVIVHDNQVYGLTK  115 (287)
T ss_pred             ccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhccH--HHHHHHHHhCcCeEEEEEECHHHHhhh
Confidence            356666666666666    457889999999995 3663  44889999999998888766 476654

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=97.96  E-value=1.2e-05  Score=78.91  Aligned_cols=60  Identities=28%  Similarity=0.365  Sum_probs=48.2

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      +.+|.++|.|+|+++|.    .++.|+|++|||++....  ..|.+|..+++|+++||-|| +|++.
T Consensus       419 gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~~vV~NN~~~g~~  479 (586)
T PRK06276        419 GTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMNS--QELATIAEYDIPVVICIFDNRTLGMV  479 (586)
T ss_pred             cccccchhHHHhhhhhc----CCCcEEEEEcchHhhccH--HHHHHHHHhCCCeEEEEEeCCchHHH
Confidence            67888888888888874    356799999999999873  55999999999987777555 57754

>PRK08322 acetolactate synthase; Reviewed

Probab=97.95  E-value=1.2e-05  Score=77.91  Aligned_cols=61  Identities=21%  Similarity=0.371  Sum_probs=48.4

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      .+.+|.++|.|+|+++|.    .++.++|++|||++....  ..|.+|..+++|+++|| +|++|++.
T Consensus       405 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~iiV~NN~~~g~~  466 (547)
T PRK08322        405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNS--QELETAVRLGLPLVVLILNDNAYGMI  466 (547)
T ss_pred             cccccchhHHHHHHHHhC----CCCcEEEEEcchhHhccH--HHHHHHHHhCCCeEEEEEeCCCcchH
Confidence            467888888888888874    467899999999999773  55888999999976665 55578864

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=97.89  E-value=1.9e-05  Score=77.28  Aligned_cols=61  Identities=25%  Similarity=0.411  Sum_probs=48.3

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      .|++|.++|.|+|+++|.    .++.|||++|||+.....  ..|.+|..+++|+++||-|| +|++-
T Consensus       417 ~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i  478 (566)
T PRK07282        417 LGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMTN--QELAILNIYKVPIKVVMLNNHSLGMV  478 (566)
T ss_pred             cccccchhhHhheeheec----CCCcEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCCchHH
Confidence            477888888888877774    467799999999999884  55999999999987766555 68764

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=97.88  E-value=2e-05  Score=71.19  Aligned_cols=58  Identities=24%  Similarity=0.255  Sum_probs=43.4

Q ss_pred             cCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccch-hhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778          144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE-GDFHAALNFSAVTEAPVIFICRNN-GWAI  207 (233)
Q Consensus       144 ~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~-G~~~Ealn~A~~~~lPvvfvv~nN-~~ai  207 (233)
                      +.|.++|.|+|+++|.    .++.|||+.|||+... |..+  +-.|+.+++|+++||-|| .|++
T Consensus        69 ~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g~~e--l~ta~r~nlpi~iIV~NN~~yGm  128 (277)
T PRK09628         69 THGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIGGNH--TIHGCRRNIDLNFILINNFIYGL  128 (277)
T ss_pred             ccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhhHHH--HHHHHHhCcCeEEEEEEChHHhc
Confidence            5677777777777774    5788999999999742 4323  556899999988877666 5776

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated

Probab=97.86  E-value=2.2e-05  Score=71.73  Aligned_cols=113  Identities=20%  Similarity=0.217  Sum_probs=72.4

Q ss_pred             hcCcc-cccccCcchHHHHHHHHhcc-----CCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCC
Q 026778           60 RQGRI-SFYLTTSGEEAINIASAAAI-----KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS  133 (233)
Q Consensus        60 r~G~i-~~~~~~~GqEa~~vg~~~aL-----~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~  133 (233)
                      |.-++ ..|.++.|+=.+.-++..+|     .|+|.++.+  +-|-.- +       ...++                 .
T Consensus        12 ~~~~~~~~~CpGCg~~~i~~~i~~al~~l~l~p~d~vivs--diG~s~-~-------~~~yl-----------------~   64 (301)
T PRK05778         12 RYDGLPTTWCPGCGNFGILNAIIQALAELGLDPDKVVVVS--GIGCSS-K-------IPGYF-----------------L   64 (301)
T ss_pred             ccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCEEEEe--CCcHhh-h-------hhhhc-----------------c
Confidence            44445 47889999887765555555     467776655  222211 0       00000                 0


Q ss_pred             CccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       134 ~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                          .....+..|.++|.|+|+++|.    .+..|||+.|||++ +.|.  ..|..|+.+++|+++||-|| .|++..
T Consensus        65 ----~~~~~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg~--~eL~tA~r~nl~i~vIV~NN~~YG~t~  132 (301)
T PRK05778         65 ----SHGLHTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIGG--GHFIHAGRRNIDITVIVENNGIYGLTK  132 (301)
T ss_pred             ----cCccchhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhccH--HHHHHHHHHCCCcEEEEEeCchhhccc
Confidence                1112255788888888887774    57789999999996 4553  34888999999988877766 476643

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=97.86  E-value=2.9e-05  Score=76.67  Aligned_cols=66  Identities=15%  Similarity=0.145  Sum_probs=49.0

Q ss_pred             ccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       139 ~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      ....+.+|.++|.|+|+++|.    .++.||+++|||++..... ..|.+|..+++|+++||-|| .|++..
T Consensus       399 ~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~-~eL~tav~~~~~i~~vVlnN~~~g~~~  465 (595)
T TIGR03336       399 VDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGI-PGLINAVYNKANITVVILDNRITAMTG  465 (595)
T ss_pred             cceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCH-HHHHHHHHcCCCeEEEEEcCcceeccC
Confidence            334577888888888877764    4677999999999985322 35777999999987777666 687654

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=97.85  E-value=1.1e-05  Score=78.77  Aligned_cols=59  Identities=29%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      +.+|.++|.|+|+++| .    ++.|+|++|||+.....  ..|.+|..+++|+++||-|| +|++.
T Consensus       425 ~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~~~~  484 (568)
T PRK07449        425 SGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGGGIF  484 (568)
T ss_pred             cchhhHHHHHHHHHhc-C----CCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCCccc
Confidence            5688888888888887 2    56699999999999763  45888999999987766555 58753

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=97.85  E-value=2.8e-05  Score=76.78  Aligned_cols=60  Identities=23%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      |++|.++|.|+|+++|.    .++.|+|++|||++...  -..|.+|..+++|+++||-|| +|++.
T Consensus       447 G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i  507 (612)
T PRK07789        447 GTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMV  507 (612)
T ss_pred             ccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHH
Confidence            56777777777777774    46789999999999887  366999999999986666555 68764

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=97.84  E-value=3.1e-05  Score=76.30  Aligned_cols=61  Identities=25%  Similarity=0.336  Sum_probs=45.0

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc-----CCCEEEEEecC-Ccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-----EAPVIFICRNN-GWAIS  208 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~-----~lPvvfvv~nN-~~ais  208 (233)
                      |.+|.++|.|+|+++|.    .++.|+|++|||++..... .-|.+|..+     ++|+++||-|| +|++-
T Consensus       415 g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i  481 (597)
T PRK08273        415 ATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDLNQV  481 (597)
T ss_pred             ccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcchHH
Confidence            56777777777777764    5678999999999965522 347788887     89988877666 57653

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=97.81  E-value=1.9e-05  Score=73.80  Aligned_cols=60  Identities=23%  Similarity=0.207  Sum_probs=47.2

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCC-ccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAI  207 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~-~ai  207 (233)
                      .|++|.++|.|+|+|+|.+    ++.|+|+.|||++....  ..|.+++.+++ |+++||.||+ |+.
T Consensus       220 ~GsMG~a~p~AlG~ala~p----~r~Vv~i~GDGsflm~~--~eL~t~~~~~~~nli~VVlNNg~~~~  281 (361)
T TIGR03297       220 VGSMGHASQIALGLALARP----DQRVVCLDGDGAALMHM--GGLATIGTQGPANLIHVLFNNGAHDS  281 (361)
T ss_pred             echhhhHHHHHHHHHHHCC----CCCEEEEEChHHHHHHH--HHHHHHHHhCCCCeEEEEEcCccccc
Confidence            5889999999999988853    67899999999986542  45788888986 7877776665 654

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=97.77  E-value=3.4e-05  Score=74.45  Aligned_cols=67  Identities=21%  Similarity=0.281  Sum_probs=56.9

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISD  213 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~  213 (233)
                      ..+++|..++.++|+|+|..    +++++.|+|||+++.---+  +..+..|+|| .+|+++|++|-|....+.
T Consensus       413 ~wgsIG~svga~lG~a~a~~----e~rvilfiGDGs~qlTvQe--iStmir~gl~~~if~~NN~GYTIE~~IH~  480 (561)
T KOG1184|consen  413 QWGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQLTVQE--ISTMIRWGLKPIIFLINNGGYTIEVEIHD  480 (561)
T ss_pred             EEeeccccchhhhhhhhccC----CceEEEEecCccceeeHHH--HHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence            45678888888888888875    4789999999999998655  8889999995 788999999999987776

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=97.07  E-value=0.00064  Score=74.45  Aligned_cols=62  Identities=21%  Similarity=0.223  Sum_probs=47.1

Q ss_pred             ccccCCC--CchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc--CCCEEEEEecC-Cccccc
Q 026778          141 VSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNN-GWAIST  209 (233)
Q Consensus       141 ~~g~lG~--~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~--~lPvvfvv~nN-~~ais~  209 (233)
                      .-|..|.  ++|.|+|+++|.     ++.|+|++|||+....  -..|.+|..+  ++|+++||-|| +|+|-.
T Consensus       757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~  823 (1655)
T PLN02980        757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIFS  823 (1655)
T ss_pred             cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhhh
Confidence            3366666  599999999884     5679999999999887  3558888874  99987766665 576643

>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=97.07  E-value=0.0011  Score=64.02  Aligned_cols=61  Identities=21%  Similarity=0.266  Sum_probs=44.4

Q ss_pred             chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-C-ccccccc
Q 026778          149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-G-WAISTPI  211 (233)
Q Consensus       149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~-~ais~~~  211 (233)
                      ++...|.|+|.++...++-++|+-||++.--....  +.++.+|||||+.||-|| + |+..+..
T Consensus       432 MGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg~d~~~  494 (571)
T KOG1185|consen  432 MGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYGLDDDG  494 (571)
T ss_pred             cccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHHHhcCCeEEEEecCCcccccCccc
Confidence            34455666666666689999999999998776555  778999999987777655 4 4444433

>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=96.53  E-value=0.026  Score=55.62  Aligned_cols=175  Identities=18%  Similarity=0.165  Sum_probs=115.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhc-c------CCCCeEec-CCccchhhhh
Q 026778           31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA-I------KNDDFVVP-QYREPGVLLW  102 (233)
Q Consensus        31 ~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~a-L------~~~D~~~~-~yR~~~~~l~  102 (233)
                      ..+.+|++.++-+.|+.+..||.-+...+..=|   -..+.|.|..- |...- |      +-.|+++. -||+.--++.
T Consensus       152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK---RYGgEGAESM~-aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt  227 (913)
T KOG0451|consen  152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVK---RYGGEGAESML-AFFWELLRDSAQANIEHVIIGMPHRGRLNLLT  227 (913)
T ss_pred             HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh---hhccccHHHHH-HHHHHHHHHHHhcCcceEEEeccccCcchHHH
Confidence            357788889999999999999987655332200   12344555542 22221 2      34577776 4898765553


Q ss_pred             --cCCCHHHHHHHHhcCCCCC------------------CCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhc
Q 026778          103 --RGFSMQEFANQCFGNKADY------------------GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMD  162 (233)
Q Consensus       103 --rG~~~~~~l~e~~g~~~g~------------------~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~  162 (233)
                        ..+||..++..+-|.+.=+                  -+|...+.|     .-+.+..+++-+--|.|+|-+-+.+..
T Consensus       228 ~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lh-----vtMlpNPSHLEAvNPVAmGKtR~rqqs  302 (913)
T KOG0451|consen  228 ALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLH-----VTMLPNPSHLEAVNPVAMGKTRSRQQS  302 (913)
T ss_pred             HHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceE-----EEecCChhhhhccCchhhcchhHHHHh
Confidence              5789999999988876422                  123333333     234566778888889999988876542


Q ss_pred             CC-------------CC-eEEEEEcCCcc-chhhHHHHHHHHHH--cCC-CEEEEEecCCcccccccccc
Q 026778          163 RK-------------DA-CAVTYFGDGGT-SEGDFHAALNFSAV--TEA-PVIFICRNNGWAISTPISDQ  214 (233)
Q Consensus       163 ~~-------------~~-vvv~~~GDG~~-~~G~~~Ealn~A~~--~~l-Pvvfvv~nN~~ais~~~~~q  214 (233)
                      ..             |. +.+.+.||++. .+|.+||.+|++-+  +.+ --|-+|.||+.+..+|.++-
T Consensus       303 r~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rG  372 (913)
T KOG0451|consen  303 RGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRG  372 (913)
T ss_pred             hcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCccccc
Confidence            11             12 44667899996 58999999999865  344 25788899999999987653

>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=96.30  E-value=0.0061  Score=57.07  Aligned_cols=136  Identities=23%  Similarity=0.263  Sum_probs=66.5

Q ss_pred             cccccCcchHHHHHHHHhccC--CCCeEecCCccchhh--hh--------------cCC---CHHHHHHHHhcCCCCCCC
Q 026778           65 SFYLTTSGEEAINIASAAAIK--NDDFVVPQYREPGVL--LW--------------RGF---SMQEFANQCFGNKADYGK  123 (233)
Q Consensus        65 ~~~~~~~GqEa~~vg~~~aL~--~~D~~~~~yR~~~~~--l~--------------rG~---~~~~~l~e~~g~~~g~~~  123 (233)
                      |-|-++-|+-.+-+-+...++  .-|.++-.=-+||..  ++              .+.   -+.+++.++ .-.     
T Consensus        48 GHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-S~P-----  121 (379)
T PF09364_consen   48 GHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-SFP-----  121 (379)
T ss_dssp             S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-TST-----
T ss_pred             cccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-CCC-----
Confidence            455556666665544444443  345666555566631  11              011   244555543 221     


Q ss_pred             CCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc-C----CCEEE
Q 026778          124 GRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-E----APVIF  198 (233)
Q Consensus       124 Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~-~----lPvvf  198 (233)
                      | +.+.|.+..-.|-.-.-|-||-.+++|.|+    -+.+.|-+++|++|||+..+|-.-.+ +.+..+ +    =-|+=
T Consensus       122 g-GipSH~~p~tPGsIhEGGELGYaLshA~GA----~~DnPdliv~~vvGDGEaETGplA~s-Wh~~kflnP~~dGaVLP  195 (379)
T PF09364_consen  122 G-GIPSHVSPETPGSIHEGGELGYALSHAFGA----VFDNPDLIVACVVGDGEAETGPLAAS-WHSNKFLNPATDGAVLP  195 (379)
T ss_dssp             T-SB-SSS-TTSTT-S---SSTS-HHHHHHHH----HTT-TT-EEEEEEETTGGGSHHHHHH-GGGGGSS-TTTS-EEEE
T ss_pred             C-CCccccCcCCCCccCcCcchhhHHHHHhhc----ccCCCCeEEEEEecCCcccCCccccc-ccccceeCcccCceeec
Confidence            1 245676554455444455555555555555    45678899999999999999942211 112222 1    12555


Q ss_pred             EEecCCcccccccc
Q 026778          199 ICRNNGWAISTPIS  212 (233)
Q Consensus       199 vv~nN~~ais~~~~  212 (233)
                      |.-=|+|.|+-|+-
T Consensus       196 ILhLNG~KI~~pTi  209 (379)
T PF09364_consen  196 ILHLNGYKISNPTI  209 (379)
T ss_dssp             EEEE-SBSSSSB-H
T ss_pred             eEEecCccccCCeE
Confidence            77889999998863

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=95.58  E-value=0.55  Score=48.74  Aligned_cols=177  Identities=15%  Similarity=0.137  Sum_probs=119.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHh-cCcccccccCcchHHHHHHHHhcc------CCCCeEec-CCccchhhh
Q 026778           30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAI------KNDDFVVP-QYREPGVLL  101 (233)
Q Consensus        30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r-~G~i~~~~~~~GqEa~~vg~~~aL------~~~D~~~~-~yR~~~~~l  101 (233)
                      .+.++.|+.+.+++++...=-||+-+-..+- +.|    ++-.|-|+.--++-..+      .-.++++. .||+.=-.|
T Consensus       169 ~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KR----FslEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL  244 (906)
T COG0567         169 KPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKR----FSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL  244 (906)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcc----ccccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence            4678999999999999999888876544331 222    34466677543333222      34577776 599877666


Q ss_pred             h--cCCCHHHHHHHHhcCCCCCCCCCCCCcccCCC-c---------cccccccccCCCCchhhhHHHHHhhhcCC-----
Q 026778          102 W--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-K---------HNYFTVSSTIATQLPHAVGAAYALKMDRK-----  164 (233)
Q Consensus       102 ~--rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~---------~~~~~~~g~lG~~~~~A~G~A~a~k~~~~-----  164 (233)
                      .  .|.|++.++.|+-|+..-.-.-++-..|.+.. +         .-+....++|-.--|+..|.+-|.+-...     
T Consensus       245 ~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~  324 (906)
T COG0567         245 VNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERD  324 (906)
T ss_pred             HHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccc
Confidence            5  69999999999999653221111222333211 1         12233456788888899999998764322     


Q ss_pred             CCeEEEEEcCCcc-chhhHHHHHHHHHHc--CC-CEEEEEecCCcccccc
Q 026778          165 DACAVTYFGDGGT-SEGDFHAALNFSAVT--EA-PVIFICRNNGWAISTP  210 (233)
Q Consensus       165 ~~vvv~~~GDG~~-~~G~~~Ealn~A~~~--~l-Pvvfvv~nN~~ais~~  210 (233)
                      ..+.+.+.||.+. .||-+.|.+|+...-  .. +.+=+|-||+.+-.|.
T Consensus       325 k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTs  374 (906)
T COG0567         325 KVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTS  374 (906)
T ss_pred             eeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCC
Confidence            2356799999986 689999999999774  44 6788889998887776

>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]

Probab=95.43  E-value=0.061  Score=49.15  Aligned_cols=64  Identities=19%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             ccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778          139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS  208 (233)
Q Consensus       139 ~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais  208 (233)
                      ....+.-|-+.+.|.|+.+|.+-.    .|+++-||| +...|-  ..+.-|...+..+.++|-||+ |+..
T Consensus        66 ~~~hs~~gra~a~atGik~A~~~l----~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnT  131 (294)
T COG1013          66 PWVHSLHGRAAAVATGIKLANPAL----SVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNT  131 (294)
T ss_pred             CceeeccCcchhhHHHHHHhccCC----eEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccC
Confidence            445667888889999998887644    799999999 888884  448889999999988888886 5443

>COG3960 Glyoxylate carboligase [General function prediction only]

Probab=93.00  E-value=0.17  Score=47.54  Aligned_cols=92  Identities=23%  Similarity=0.251  Sum_probs=65.7

Q ss_pred             HHHHHHHHhcCCCCCC--------CCCCCCcccCCCcccc-ccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc
Q 026778          107 MQEFANQCFGNKADYG--------KGRQMPIHYGSNKHNY-FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT  177 (233)
Q Consensus       107 ~~~~l~e~~g~~~g~~--------~Gr~~~~H~~~~~~~~-~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~  177 (233)
                      ..+-|.+.|||+.-+.        .|.+ -.|...|.+-+ .+..||+|..+|.|+|+--|    ..++-++++-||=..
T Consensus       375 vyeemn~~fgrd~~yvstiglsqia~aq-flhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydf  449 (592)
T COG3960         375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQ-FLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDF  449 (592)
T ss_pred             HHHHHHhhcCCceeEEEeccHHHHhhhh-hhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchH
Confidence            3455677788875432        1222 24655555433 45789999999999887544    456778999999654


Q ss_pred             chhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778          178 SEGDFHAALNFSAVTEAPVIFICRNNGW  205 (233)
Q Consensus       178 ~~G~~~Ealn~A~~~~lPvvfvv~nN~~  205 (233)
                      +-  .-|-|..++.+|+|.|-|+-||.|
T Consensus       450 qf--mieelavgaq~k~pyihv~vnnay  475 (592)
T COG3960         450 QF--LIEELAVGAQFKIPYIHVLVNNAY  475 (592)
T ss_pred             HH--HHHHHhhhhcccCceEEEEecchH
Confidence            32  357788999999999999999987

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]

Probab=92.83  E-value=0.11  Score=52.46  Aligned_cols=83  Identities=23%  Similarity=0.353  Sum_probs=55.5

Q ss_pred             CCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHH---HH-HHHHHHcCCCEEEEEec
Q 026778          127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH---AA-LNFSAVTEAPVIFICRN  202 (233)
Q Consensus       127 ~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~---Ea-ln~A~~~~lPvvfvv~n  202 (233)
                      .+.|....-.|.....|.+|..+++|.|.|+    ...+-++.|++|||+..+|..-   -+ -.++....--|+=|..=
T Consensus       137 i~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~l  212 (793)
T COG3957         137 IGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHL  212 (793)
T ss_pred             cccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEe
Confidence            5668776667777777888887777776665    6678899999999988887421   11 11111112235556777


Q ss_pred             CCccccccccc
Q 026778          203 NGWAISTPISD  213 (233)
Q Consensus       203 N~~ais~~~~~  213 (233)
                      |+|.|+-|+--
T Consensus       213 NGykI~npT~l  223 (793)
T COG3957         213 NGYKIENPTVL  223 (793)
T ss_pred             cceeccCceee
Confidence            99999988643

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=91.78  E-value=0.19  Score=50.12  Aligned_cols=65  Identities=17%  Similarity=0.178  Sum_probs=49.7

Q ss_pred             ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778          135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW  205 (233)
Q Consensus       135 ~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~  205 (233)
                      +.+-...+-..|+++++|-|++++..     +.+++++|||+....-.- ++-.|...+.+++++|-||.+
T Consensus       420 P~~~~d~t~~mGssig~a~g~~~~~~-----k~~va~iGDsTF~HsGi~-~l~nAV~n~~~~~~vvLdN~~  484 (640)
T COG4231         420 PLNTVDTTTMMGSSIGIAGGLSFAST-----KKIVAVIGDSTFFHSGIL-ALINAVYNKANILVVVLDNRT  484 (640)
T ss_pred             CcchhhhhhhccchhhhccccccccC-----CceEEEeccccccccCcH-HHHHHHhcCCCeEEEEEeccc
Confidence            34444455667777888888877654     679999999998765543 488888899999999999986

>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=91.55  E-value=0.28  Score=47.42  Aligned_cols=56  Identities=29%  Similarity=0.284  Sum_probs=43.7

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG  204 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~  204 (233)
                      |..|-++|.|+|...|    +.+.+|+-+=||++.+..-..  |..+...++||-+++-||+
T Consensus       524 GtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt~~E--Lat~rq~~~PVKiLiLNNe  579 (675)
T KOG4166|consen  524 GTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMTVQE--LATIRQENLPVKILILNNE  579 (675)
T ss_pred             cccccCcchhhccccc----CcccEEEeccCCceeeeehHh--hhhhhhcCCceEEEEecch
Confidence            3456667777776655    578899999999999887443  7888889999988888885

>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]

Probab=91.51  E-value=3.4  Score=41.01  Aligned_cols=183  Identities=17%  Similarity=0.163  Sum_probs=93.5

Q ss_pred             CeeEEeCCCCCCCCCCCCC----CCCHHHHHHHH------HHHHH--HhHHHHHHHHHHhcCcccccccCcchHHHHHHH
Q 026778           13 PCYRVLDDDGQPFPDSSFV----KVSEGVAIKMY------NDMVT--LQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS   80 (233)
Q Consensus        13 ~~~~vl~~~g~~~~~~~~~----~~s~e~l~~ly------r~M~~--~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~   80 (233)
                      ..|-++|+.+...++....    ..+..++.+-+      +.-++  .-.+++++.+..++-.-.- ....++  ++..+
T Consensus       306 ~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~~~~-~~~e~~--~a~~l  382 (566)
T COG1165         306 IEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQLAAE-ALTEAH--LAAAL  382 (566)
T ss_pred             CcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHhccc-CchhhH--HHHHH
Confidence            4678899988877764211    11333333211      22222  2234445444433311111 122222  23345


Q ss_pred             HhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhh
Q 026778           81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK  160 (233)
Q Consensus        81 ~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k  160 (233)
                      ...|.++|.+|-.         -.++++++=  .++...   +|  ..++   ...|.-++-|.    ++.|+|++.|.+
T Consensus       383 ~~~lp~~~~LFvg---------NSmpVRdvd--~~~~~~---~~--~~v~---sNRGA~GIDG~----vSTA~Gi~~a~~  439 (566)
T COG1165         383 ADLLPPQDQLFVG---------NSMPVRDVD--ALGQLP---AG--YRVY---SNRGASGIDGT----VSTALGIARATQ  439 (566)
T ss_pred             HHhCCCCCeEEEe---------cCchhhhHH--HhccCc---cC--ceee---cCCCccccchh----HHHHhhhhhhcC
Confidence            5667788888764         235555543  355432   11  1222   12232233333    455889988754


Q ss_pred             hcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCE-EEEEecCCccccccccccccCCCchhhhccccc
Q 026778          161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPISDQFRSIPSLPCLSNILT  229 (233)
Q Consensus       161 ~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPv-vfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~  229 (233)
                           +.++.++||=++=..  --+|-+......|+ |+|++||+=+|-.-.... ..++.-+++.++|.
T Consensus       440 -----~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~-~~~~~fe~~F~tPh  501 (566)
T COG1165         440 -----KPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQA-QSEPVFERLFGTPH  501 (566)
T ss_pred             -----CceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCC-CCcchHHHhcCCCC
Confidence                 349999999665443  12344555666784 777888888887543222 23335666666664

>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes

Probab=89.44  E-value=2.4  Score=40.00  Aligned_cols=40  Identities=15%  Similarity=0.190  Sum_probs=30.7

Q ss_pred             eEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778          167 CAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS  208 (233)
Q Consensus       167 vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais  208 (233)
                      -++++.||| +..-|  ..++.-|...+.+|.+||-||. |+..
T Consensus       153 ~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nT  194 (365)
T cd03377         153 SVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNT  194 (365)
T ss_pred             ceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccC
Confidence            789999999 55777  3447778888899988887775 6553

This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra

>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=87.00  E-value=3.9  Score=41.89  Aligned_cols=176  Identities=14%  Similarity=0.166  Sum_probs=116.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhc-CcccccccCcchHHHHHHHHhc------cCCCCeEec-CCccchhhh
Q 026778           30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQ-GRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLL  101 (233)
Q Consensus        30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~-G~i~~~~~~~GqEa~~vg~~~a------L~~~D~~~~-~yR~~~~~l  101 (233)
                      ...+|.|+-+-++.++.++-.||+-+...+.. .+.    .-.|-|..-=|+-..      |.-++.|+. .||+.=-.|
T Consensus       243 ~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRF----GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL  318 (1017)
T KOG0450|consen  243 PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRF----GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVL  318 (1017)
T ss_pred             ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccc----cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHH
Confidence            45789999999999999999999987665533 222    224455543333222      234566665 489876555


Q ss_pred             hc--CCCHHHHHHHHhcCCCCCCCCCC-CCcccCC---Cc---------cccccccccCCCCchhhhHHHHHhhhc----
Q 026778          102 WR--GFSMQEFANQCFGNKADYGKGRQ-MPIHYGS---NK---------HNYFTVSSTIATQLPHAVGAAYALKMD----  162 (233)
Q Consensus       102 ~r--G~~~~~~l~e~~g~~~g~~~Gr~-~~~H~~~---~~---------~~~~~~~g~lG~~~~~A~G~A~a~k~~----  162 (233)
                      +-  -.|+++++.|+-|.+.. -.|.+ --.|.+-   +.         +-+....+++-+.=|..+|=--|.++.    
T Consensus       319 ~NVvRKpl~qIfseF~g~~~~-DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~  397 (1017)
T KOG0450|consen  319 ANVVRKPLEQIFSEFSGLEAA-DEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDE  397 (1017)
T ss_pred             HHHHhhHHHHHHHhccCCCCC-cCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcccc
Confidence            53  26999999999884421 11211 1233321   11         123445677888889999988888764    


Q ss_pred             -CCCCeEEEEEcCCcc-chhhHHHHHHHHHHcC--C-CEEEEEecCCcccccc
Q 026778          163 -RKDACAVTYFGDGGT-SEGDFHAALNFSAVTE--A-PVIFICRNNGWAISTP  210 (233)
Q Consensus       163 -~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~--l-Pvvfvv~nN~~ais~~  210 (233)
                       ++....+.+.||++. .||-++|.+.+...-+  . -.|-||-||+.+..|-
T Consensus       398 ~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTD  450 (1017)
T KOG0450|consen  398 EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTD  450 (1017)
T ss_pred             ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccC
Confidence             345578999999997 4899999998865432  2 2688999999887763

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]

Probab=83.91  E-value=1.8  Score=42.38  Aligned_cols=67  Identities=19%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEe-cCCccccccccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPISDQF  215 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~-nN~~ais~~~~~q~  215 (233)
                      +..|--+.-++|+    |+...++-|++++|||+...=  |.=|.++..++..+++++- |-+|+.=-+....+
T Consensus       444 SCMGYEiaG~lG~----K~a~pdreV~vmVGDGSymMl--nSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~  511 (617)
T COG3962         444 SCMGYEIAGGLGA----KAAEPDREVYVMVGDGSYMML--NSELATSVMLGKKIIVVLLDNRGYGCINRLQMAT  511 (617)
T ss_pred             ccccccccccccc----ccCCCCCeEEEEEcccchhhh--hHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhc
Confidence            3444444444443    577788999999999987754  6668889999999766664 44787654443333

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

Probab=80.47  E-value=4.4  Score=31.94  Aligned_cols=51  Identities=24%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             hhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778          152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW  205 (233)
Q Consensus       152 A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~  205 (233)
                      |+++|.+.-+.+...++++..|-|.++   ..+++-.|..-++|+|+++-+...
T Consensus        47 a~~~A~G~a~~~~~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~   97 (154)
T cd06586          47 AAGAAAGYARAGGPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGI   97 (154)
T ss_pred             HHHHHHHHHHhhCCEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCh
Confidence            444444444444434445555888753   467888888889999999976654

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
1x7y_A	400	Crystal Structure Of The Human Mitochondrial Branch		4e-56
1v11_A	400	Crosstalk Between Cofactor Binding And The Phosphor		5e-56
1x7x_A	400	Crystal Structure Of The Human Mitochondrial Branch		5e-56
1dtw_A	400	Human Branched-Chain Alpha-Keto Acid Dehydrogenase		5e-56
1v1m_A	400	Crosstalk Between Cofactor Binding And The Phosphor		5e-56
1x7z_A	400	Crystal Structure Of The Human Mitochondrial Branch		5e-56
2j9f_A	400	Human Branched-Chain Alpha-Ketoacid Dehydrogenase-		5e-56
2bff_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		5e-56
1x80_A	400	Crystal Structure Of The Human Mitochondrial Branch		5e-56
1x7w_A	400	Crystal Structure Of The Human Mitochondrial Branch		5e-56
1v16_A	400	Crosstalk Between Cofactor Binding And The Phosphor		5e-56
1olu_A	400	Roles Of His291-Alpha And His146-Beta' In The Reduc		5e-56
2bfc_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		2e-55
2bfb_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		3e-55
2bfd_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		5e-55
2bfe_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		3e-54
1um9_A	367	Branched-chain 2-oxo Acid Dehydrogenase (e1) From T		6e-33
2bp7_A	410	New Crystal Form Of The Pseudomonas Putida Branched		1e-28
3duf_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		1e-26
1w85_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1		1e-26
1w88_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1(		4e-26
1qs0_A	407	Crystal Structure Of Pseudomonas Putida 2-Oxoisoval		4e-26
3dva_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		5e-26
3exh_C	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		2e-12
3exe_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		3e-12
3exf_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		3e-12
2ozl_A	365	Human Pyruvate Dehydrogenase S264e Variant Length =		3e-12
3exi_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		7e-12
1ni4_A	365	Human Pyruvate Dehydrogenase Length = 365		2e-10

>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  QYRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/216 (48%), Positives = 137/216 (63%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  Q+RE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQFREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/216 (48%), Positives = 136/216 (62%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V   YRE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score =  210 bits (535), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/216 (48%), Positives = 136/216 (62%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V  Q RE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/216 (48%), Positives = 135/216 (62%)
Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61  QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE           N D V    RE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAAREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235

>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 4/204 (1%)
Query: 16  RVLDDDGQPFPDSSFVKVSEGVAIK-MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEE 74
           R++ ++G+   D  F    EG  ++ +Y DM+  + +D  +    R G+ SF    +G E
Sbjct: 17  RLIGEEGEWLGD--FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 74
Query: 75  XXXXXXXXXXKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133
                     +   D+V P YR+ G+ L  G  ++E   Q    KAD  KGRQMP H GS
Sbjct: 75  AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 134
Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
              N+FTV+S IA+ +P A GAA ++K+ R    AV  FGDG TSEGD++A +NF+AV  
Sbjct: 135 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 194
Query: 194 APVIFICRNNGWAISTPISDQFRS 217
           AP +FI  NN +AIS     Q  S
Sbjct: 195 APAVFIAENNFYAISVDYRHQTHS 218

>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 16  RVLDDDGQ---PFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSG 72
           RVLD+ G    P+ +     +   +  +    M+  +  D+    AQRQ ++SFY+ + G
Sbjct: 56  RVLDEQGDAQGPWAED----IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLG 111
Query: 73  EEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYG 132
           EE             D   P YR+  +L+ R  S+ E   Q   N+ D  KGRQ+PI Y 
Sbjct: 112 EEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYS 171
Query: 133 SNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT 192
             +  +FT+S  +ATQ   AVG A A  +      A  + GDG T+E DFH AL F+ V 
Sbjct: 172 VREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVY 231
Query: 193 EAPVIFICRNNGWAIST 209
            APVI    NN WAIST
Sbjct: 232 RAPVILNVVNNQWAIST 248

>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 9/209 (4%)
Query: 6   ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
           E   E+ P +++L+++G+   + +  ++S+    ++   MV  + +D       RQGR+ 
Sbjct: 15  EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 66  FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
           FY  T+G+E          + +DF++P YR+   ++W G  +     Q F     +  G 
Sbjct: 75  FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
           Q+P        N       I  Q   A G A  LKM  K A A+TY GDGGTS+GDF+  
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQ 214
           +NF+   +AP IF+ +NN +AISTP+  Q
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 214

>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 9/209 (4%)
Query: 6   ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
           E   E+ P +++L+++G+   + +  ++S+    ++   MV  + +D       RQGR+ 
Sbjct: 14  EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 66  FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
           FY  T+G+E          + +DF++P YR+   ++W G  +     Q F     +  G 
Sbjct: 74  FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
           Q+P        N       I  Q   A G A  LKM  K A A+TY GDGGTS+GDF+  
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 184
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQ 214
           +NF+   +AP IF+ +NN +AISTP+  Q
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 213

>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 9/209 (4%)
Query: 6   ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
           E   E+ P +++L+++G+   + +  ++S+    ++   MV  + +D       RQGR+ 
Sbjct: 14  EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 66  FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
           FY  T+G+E          + +DF++P YR+   ++W G  +     Q F     +  G 
Sbjct: 74  FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
           Q+P        N       I  Q   A G A  LKM  K A A+TY GDGGTS+G+F+  
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQG 184
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQ 214
           +NF+   +AP IF+ +NN +AISTP+  Q
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 213

>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 78/152 (51%)
Query: 58  AQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGN 117
           AQRQ + SFY  + GEE             D   P YR+  +L  R  S+ E   Q   N
Sbjct: 96  AQRQKKXSFYXQSLGEEAIGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSN 155
Query: 118 KADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 177
           + D  KGRQ+PI Y   +  +FT+S  +ATQ   AVG A A  +      A  + GDG T
Sbjct: 156 ERDPLKGRQLPIXYSVREAGFFTISGNLATQFVQAVGWAXASAIKGDTKIASAWIGDGAT 215
Query: 178 SEGDFHAALNFSAVTEAPVIFICRNNGWAIST 209
           +E DFH AL F+ V  APVI    NN WAIST
Sbjct: 216 AESDFHTALTFAHVYRAPVILNVVNNQWAIST 247

>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 9/209 (4%)
Query: 6   ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
           E   E+ P +++L+++G+   + +  ++S+    ++   MV  + +D       RQGR+ 
Sbjct: 15  EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 66  FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
           FY  T+G+E          + +DF++P YR+   ++W G  +     Q F     +  G 
Sbjct: 75  FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
           Q+P        N       I  Q   A G A  LKM  K A A+TY GDGGTS+GDF+  
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQ 214
           +NF+   +AP IF+ +NN +A STP+  Q
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAASTPVEKQ 214

>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 38  AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
            +K Y  M T++ M+    +  +Q  I  F     G+E             D ++  YR 
Sbjct: 53  GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 112
Query: 97  PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
            G    RG S++E   +  G K    KG+   +H  +   N++  +  +  Q+P   G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212
            A K + KD   +T +GDG  ++G    A N +A+ + P IFIC NN + + T + 
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAVE 226

>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 38  AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
            +K Y  M T++ M+    +  +Q  I  F     G+E             D ++  YR 
Sbjct: 53  GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 112
Query: 97  PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
            G    RG S++E   +  G K    KG+   +H  +   N++  +  +  Q+P   G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 211
            A K + KD   +T +GDG  ++G    A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 225

>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 38  AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
            +K Y  M T++ M+    +  +Q  I  F     G+E             D ++  YR 
Sbjct: 53  GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 112
Query: 97  PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
            G    RG S++E   +  G K    KG+   +H  +   N++  +  +  Q+P   G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212
            A K + KD   +T +GDG  ++G    A N +A+ + P IFIC NN + + T + 
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAVE 226

>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 38  AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
            +K Y  M T++ M+    +  +Q  I  F     G+E             D ++  YR 
Sbjct: 36  GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 95
Query: 97  PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
            G    RG S++E   +  G K    KG+   +H  +   N++  +  +  Q+P   G A
Sbjct: 96  HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 153
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212
            A K + KD   +T +GDG  ++G    A N +A+ + P IFIC NN + + T + 
Sbjct: 154 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVE 209

>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 38  AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
            +K Y  M T++ M+    +  +Q  I  F     G+E             D ++  +R 
Sbjct: 53  GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAFRA 112
Query: 97  PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
            G    RG S++E   +  G K    KG+   +H  +   N++  +  +  Q+P   G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 211
            A K + KD   +T +GDG  ++G    A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 225

>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 88  DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIAT 147
           D ++  YR  G    RG S++E   +  G K    KG+    H  +   N++  +  +  
Sbjct: 87  DHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHXYAK--NFYGGNGIVGA 144
Query: 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI 207
           Q+P   G A A K + KD   +T +GDG  ++G    A N +A+ + P IFIC NN +  
Sbjct: 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFICENNRYGX 204
Query: 208 STPI 211
            T +
Sbjct: 205 GTSV 208

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	1e-118
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	1e-110
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	1e-109
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	1e-106
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	3e-34

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400

 Score =  341 bits (878), Expect = e-118
 Identities = 109/217 (50%), Positives = 143/217 (65%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 20  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE  ++ SAAA+ N D V  Q RE GVL++R + ++ F  QC+GN +D
Sbjct: 80  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 139

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R 
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG 236

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407

 Score =  322 bits (826), Expect = e-110
 Identities = 74/217 (34%), Positives = 107/217 (49%), Gaps = 1/217 (0%)

Query: 5   SESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI 64
           +++++      RVLD+ G          +   +  +    M+  +  D+    AQRQ ++
Sbjct: 44  ADTADLSYSLVRVLDEQGDA-QGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM 102

Query: 65  SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKG 124
           SFY+ + GEEAI    A A+   D   P YR+  +L+ R  S+ E   Q   N+ D  KG
Sbjct: 103 SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKG 162

Query: 125 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184
           RQ+PI Y   +  +FT+S  +ATQ   AVG A A  +      A  + GDG T+E DFH 
Sbjct: 163 RQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHT 222

Query: 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSL 221
           AL F+ V  APVI    NN WAIST  +       + 
Sbjct: 223 ALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTF 259

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367

 Score =  317 bits (815), Expect = e-109
 Identities = 81/207 (39%), Positives = 116/207 (56%), Gaps = 2/207 (0%)

Query: 12  IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTS 71
               R++ ++G+   D   + +      ++Y DM+  + +D  +    R G+ SF    +
Sbjct: 13  EEPIRLIGEEGEWLGDFP-LDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAA 71

Query: 72  GEEAINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIH 130
           G EA  +A A AI+   D+V P YR+ G+ L  G  ++E   Q    KAD  KGRQMP H
Sbjct: 72  GHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEH 131

Query: 131 YGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA 190
            GS   N+FTV+S IA+ +P A GAA ++K+ R    AV  FGDG TSEGD++A +NF+A
Sbjct: 132 PGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAA 191

Query: 191 VTEAPVIFICRNNGWAISTPISDQFRS 217
           V  AP +FI  NN +AIS     Q  S
Sbjct: 192 VQGAPAVFIAENNFYAISVDYRHQTHS 218

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368

 Score =  309 bits (793), Expect = e-106
 Identities = 72/212 (33%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 6   ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
           E   E+ P +++L+++G+   + +  ++S+    ++   MV  + +D       RQGR+ 
Sbjct: 14  EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73

Query: 66  FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
           FY  T+G+EA  IAS  A++ +DF++P YR+   ++W G  +     Q F     +  G 
Sbjct: 74  FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129

Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
           Q+P        N       I  Q   A G A  LKM  K A A+TY GDGGTS+GDF+  
Sbjct: 130 QIPEG-----VNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 184

Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           +NF+   +AP IF+ +NN +AISTP+  Q  +
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVA 216

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365

 Score =  124 bits (314), Expect = 3e-34
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)

Query: 26  PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAI 84
                  ++    +K Y  M T++ M+    +  +Q  I  F     G+EA  +   A I
Sbjct: 24  GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGI 83

Query: 85  KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY--GKGRQMPIHYGSNKHNYFTVS 142
              D ++  YR  G    RG S++E   +  G K     GKG  M  H  +   N++  +
Sbjct: 84  NPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSM--HMYA--KNFYGGN 139

Query: 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202
             +  Q+P   G A A K + KD   +T +GDG  ++G    A N +A+ + P IFIC N
Sbjct: 140 GIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICEN 199

Query: 203 NGWAISTPIS 212
           N + + T + 
Sbjct: 200 NRYGMGTSVE 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	100.0
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	100.0
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	100.0
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	100.0
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	100.0
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	100.0
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	99.94
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	99.91
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	99.82
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	99.78
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	99.78
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	99.75
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	99.75
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	99.74
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	99.74
3l84_A	632	Transketolase; TKT, structural genomics, center fo	99.74
3uk1_A	711	Transketolase; structural genomics, seattle struct	99.73
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	99.72
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	99.72
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	99.71
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	99.13
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	98.9
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	98.88
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	98.77
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	98.73
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	98.71
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	98.71
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	98.67
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	98.64
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	98.64
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	98.64
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	98.63
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	98.62
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	98.62
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	98.6
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	98.55
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	98.52
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	98.45
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	98.44
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	98.42
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	98.37
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	98.24
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	98.08
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	94.01

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=100.00  E-value=3.5e-55  Score=408.63  Aligned_cols=232  Identities=48%  Similarity=0.823  Sum_probs=219.6

Q ss_pred             CccccCCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHH
Q 026778            1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS   80 (233)
Q Consensus         1 ~~~~~~~~~~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~   80 (233)
                      |+|++++.+..+|++||||+||+++++...+.+++|+++++||.|+++|.||+++..+++||+++|++++.||||+++|+
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~   99 (400)
T 2bfd_A           20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS   99 (400)
T ss_dssp             CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred             eeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHH
Confidence            68999988889999999999999988755678999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhh
Q 026778           81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK  160 (233)
Q Consensus        81 ~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k  160 (233)
                      +.+|+++|+++++||+|++++.+|++++++|++++|+.+++++|+++++|+++++.++.+.+|++|.++|.|+|+|+|.+
T Consensus       100 ~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~  179 (400)
T 2bfd_A          100 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK  179 (400)
T ss_dssp             HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred             HHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             hcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       161 ~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      +++++++++|++|||++++|.|||+||+|+.|+||+||||+||+|+|+++...++...+++++..  +||.++|
T Consensus       180 ~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V  253 (400)
T 2bfd_A          180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRV  253 (400)
T ss_dssp             HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEE
T ss_pred             hhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999988888877654  4666654

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=100.00  E-value=1.1e-52  Score=392.76  Aligned_cols=220  Identities=35%  Similarity=0.481  Sum_probs=207.5

Q ss_pred             CCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEe
Q 026778           12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV   91 (233)
Q Consensus        12 ~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~   91 (233)
                      +|++||||++|+++++ ..+.+++|+++++||.|+++|.||+++..+++||+++|++++.||||+++|++.+|+++||++
T Consensus        51 ~~~~~~ld~~g~~~~~-~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~  129 (407)
T 1qs0_A           51 YSLVRVLDEQGDAQGP-WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF  129 (407)
T ss_dssp             TSCBCCBCTTSCBCSG-GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEE
T ss_pred             CCeEEEECCCCCCCCc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEE
Confidence            5889999999999876 357899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEE
Q 026778           92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY  171 (233)
Q Consensus        92 ~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~  171 (233)
                      ++||+|+++|++|+++.++|+|++|+.++.++|+++++|+++++.++++.+|++|.++|+|+|+|+|.|+++.+++++|+
T Consensus       130 ~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i  209 (407)
T 1qs0_A          130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAW  209 (407)
T ss_dssp             CCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             ecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEE
Confidence            99999999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             EcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccc-cCCCchhhh--cccccccc
Q 026778          172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSIPSLPCL--SNILTILL  232 (233)
Q Consensus       172 ~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~-~~~~~~~~~--~~~~~~~~  232 (233)
                      +|||++++|.|||+||+|+.|+||+||||+||+|+|+++...++ ...+++++.  .++|.++|
T Consensus       210 ~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~V  273 (407)
T 1qs0_A          210 IGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRV  273 (407)
T ss_dssp             EETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEE
T ss_pred             ECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEE
Confidence            99999999999999999999999999999999999999988777 567786654  46777654

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=100.00  E-value=2.9e-51  Score=378.31  Aligned_cols=202  Identities=26%  Similarity=0.415  Sum_probs=192.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCH
Q 026778           29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM  107 (233)
Q Consensus        29 ~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~  107 (233)
                      +.+.+|+|+++++||.|+++|.||+++..++|||++ +|+|++.||||+++|++.+|+++||++++||+|++++++|+|+
T Consensus        27 ~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~  106 (365)
T 2ozl_A           27 VTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV  106 (365)
T ss_dssp             SEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCH
Confidence            456799999999999999999999999999999999 7999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHH
Q 026778          108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN  187 (233)
Q Consensus       108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn  187 (233)
                      .++|+|++|+.+|+++|++|++|+.+  .++++.+|++|.++|+|+|+|+|.++++.++++||++|||++++|.|||+||
T Consensus       107 ~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn  184 (365)
T 2ozl_A          107 REILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN  184 (365)
T ss_dssp             HHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHH
Confidence            99999999999999999999999854  4888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778          188 FSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL  232 (233)
Q Consensus       188 ~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~  232 (233)
                      +|+.|++|+||||+||+|+|+++...++...+++.|-.++|+++|
T Consensus       185 ~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g~p~~~V  229 (365)
T 2ozl_A          185 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRV  229 (365)
T ss_dssp             HHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEE
T ss_pred             HHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCCCCEEEE
Confidence            999999999999999999999998888888889888888888765

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=100.00  E-value=6.7e-50  Score=369.41  Aligned_cols=214  Identities=33%  Similarity=0.552  Sum_probs=197.8

Q ss_pred             CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCe
Q 026778           10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDF   89 (233)
Q Consensus        10 ~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~   89 (233)
                      ..+|++||||+||+++++...+.+|+|+++++||.|+++|.||+++..+++||+++|||++.||||+++|++.+|+++|+
T Consensus        18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~   97 (368)
T 1w85_A           18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF   97 (368)
T ss_dssp             HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred             CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence            45789999999999987655578999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEE
Q 026778           90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV  169 (233)
Q Consensus        90 ~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv  169 (233)
                      ++++||+|++++++|.++.++|++++|+.+    |+  ++|   ++.++.+.+|++|.++|.|+|+|+|.++++.+++++
T Consensus        98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~--~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv  168 (368)
T 1w85_A           98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GN--QIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI  168 (368)
T ss_dssp             EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GG--CCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred             EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CC--CCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence            999999999999999999999999999875    33  345   567899999999999999999999999999999999


Q ss_pred             EEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhh--cccccccc
Q 026778          170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCL--SNILTILL  232 (233)
Q Consensus       170 ~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~--~~~~~~~~  232 (233)
                      |++|||++++|.+||+||+|+.|+||+||||+||+|+|+++...+++..+++++.  .++|+++|
T Consensus       169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V  233 (368)
T 1w85_A          169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQV  233 (368)
T ss_dssp             EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEE
T ss_pred             EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEE
Confidence            9999999999999999999999999999999999999999999888878887655  45777654

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=100.00  E-value=2.7e-48  Score=358.00  Aligned_cols=222  Identities=37%  Similarity=0.540  Sum_probs=208.7

Q ss_pred             CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCC-C
Q 026778           10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-D   88 (233)
Q Consensus        10 ~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~-D   88 (233)
                      ..+|++||||+||+++++ ..+.+|+++++++|+.|+++|.||+++..++++|++++++++.|||+++++.+.+++++ |
T Consensus        11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD   89 (367)
T 1umd_A           11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD   89 (367)
T ss_dssp             SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred             CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence            467899999999999877 45789999999999999999999999999999999999999999999999999999998 9


Q ss_pred             eEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeE
Q 026778           89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA  168 (233)
Q Consensus        89 ~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vv  168 (233)
                      +++++||+|++++.+|.++.++|++++|+.+|+++|+++++|+++++.++.+.++++|+++|.|+|+|+|.|+.+.++++
T Consensus        90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v  169 (367)
T 1umd_A           90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA  169 (367)
T ss_dssp             EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred             EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence            99999999999999999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             EEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       169 v~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      +|++|||++++|.+|||||+|+.|++|+||||+||+|+|+++...+++..+++++..  ++|.+.|
T Consensus       170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V  235 (367)
T 1umd_A          170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLV  235 (367)
T ss_dssp             EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEE
T ss_pred             EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEe
Confidence            999999999999999999999999999999999999999999888887788877664  4665543

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=100.00  E-value=1.2e-37  Score=315.24  Aligned_cols=219  Identities=12%  Similarity=0.094  Sum_probs=171.8

Q ss_pred             CCCeeEEeCCCCC-CCCCC---CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-
Q 026778           11 RIPCYRVLDDDGQ-PFPDS---SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-   85 (233)
Q Consensus        11 ~~~~~~vl~~~g~-~~~~~---~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-   85 (233)
                      .++..+++|++++ ++.+.   ..+.+|+|+++++||+|+++|.||+++..++++|+   .+++.||||+++|+..+++ 
T Consensus       169 g~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gk---rf~~~G~Ea~i~g~~~~~~~  245 (933)
T 2jgd_A          169 GAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAK---RFSLEGGDALIPMLKEMIRH  245 (933)
T ss_dssp             EEECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCTTCTTHHHHHHHHHHH
T ss_pred             cceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCchHHHHHHHHHHHH
Confidence            3467788898886 33210   13679999999999999999999999999999988   3457999999999776665 


Q ss_pred             -----CCCeEec-CCccchhhhh--cCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccc----------cccccccCCC
Q 026778           86 -----NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN----------YFTVSSTIAT  147 (233)
Q Consensus        86 -----~~D~~~~-~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~----------~~~~~g~lG~  147 (233)
                           ++||+++ +||+|++.|+  +|.|+.++|+|++|+.++.++|+++++|++....+          +.+.++++|+
T Consensus       246 a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~  325 (933)
T 2jgd_A          246 AGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEI  325 (933)
T ss_dssp             HHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTC
T ss_pred             HhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCccccc
Confidence                 6999996 8999999999  99999999999999998888888999998765433          3467899999


Q ss_pred             CchhhhHHHHHhhhcC-----CCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCC---EEEEEecCCccccc-cccccccC
Q 026778          148 QLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAIST-PISDQFRS  217 (233)
Q Consensus       148 ~~~~A~G~A~a~k~~~-----~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~-~~~~q~~~  217 (233)
                      ++|+|+|+|+|.++++     .+.+++|++|||++ ++|.+|||||+|+.|++|   +||||+||+|+|++ +...+...
T Consensus       326 ~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~  405 (933)
T 2jgd_A          326 VSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARST  405 (933)
T ss_dssp             HHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC--------------
T ss_pred             ccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccc
Confidence            9999999999999984     77899999999997 999999999999999999   99999999999999 98888776


Q ss_pred             CCchhhh--cccccccc
Q 026778          218 IPSLPCL--SNILTILL  232 (233)
Q Consensus       218 ~~~~~~~--~~~~~~~~  232 (233)
                      +.++++.  .++|.+.|
T Consensus       406 ~~~~~~a~a~g~p~~~V  422 (933)
T 2jgd_A          406 PYCTDIGKMVQAPIFHV  422 (933)
T ss_dssp             -CGGGGGGTTTCCEEEE
T ss_pred             hhHHHHHHHcCCCEEEE
Confidence            7665544  45666643

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=100.00  E-value=1.6e-37  Score=312.41  Aligned_cols=216  Identities=15%  Similarity=0.119  Sum_probs=172.3

Q ss_pred             CeeEEeCCCCC-CC----CCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--
Q 026778           13 PCYRVLDDDGQ-PF----PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--   85 (233)
Q Consensus        13 ~~~~vl~~~g~-~~----~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--   85 (233)
                      +..++.|++++ ++    +... +.+|+|+++++|+.|+++|.||+++..++++|+.   ++..||||+++|++.+|+  
T Consensus        91 e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~---~g~~G~Ea~~~g~~~~l~~~  166 (868)
T 2yic_A           91 EYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVIDQC  166 (868)
T ss_dssp             ECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHHHH
T ss_pred             ceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHHHh
Confidence            44556666664 22    1112 6799999999999999999999999999998885   345999999999997754  


Q ss_pred             ----CCCeEec-CCccchhhhh--cCCCHHHHHHHHhcCCCCC-C-CCCCCCcccCCCc------------ccccccccc
Q 026778           86 ----NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSST  144 (233)
Q Consensus        86 ----~~D~~~~-~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~-~-~Gr~~~~H~~~~~------------~~~~~~~g~  144 (233)
                          ++|++++ +||+|++.|+  +|+|++++|+|++|+.+++ + +|+++++|++...            .++.+.+++
T Consensus       167 ~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~  246 (868)
T 2yic_A          167 AEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSH  246 (868)
T ss_dssp             HHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSS
T ss_pred             hhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcc
Confidence                8999998 8999999999  9999999999999999877 3 5677789986543            345667899


Q ss_pred             CCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc-cchhhHHHHHHHHHHcCCC---EEEEEecCCcccccc
Q 026778          145 IATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG-TSEGDFHAALNFSAVTEAP---VIFICRNNGWAISTP  210 (233)
Q Consensus       145 lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~-~~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~~  210 (233)
                      +|+++|+|+|+|+|.|+++          .+.+++|++|||+ ++||.||||||+|+.|++|   +||||+||+|+||++
T Consensus       247 Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~  326 (868)
T 2yic_A          247 LEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTA  326 (868)
T ss_dssp             TTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBC
T ss_pred             ccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccC
Confidence            9999999999999999875          6679999999999 4999999999999999999   999999999999998


Q ss_pred             ccccccCCCch--hhhcccccccc
Q 026778          211 ISDQFRSIPSL--PCLSNILTILL  232 (233)
Q Consensus       211 ~~~q~~~~~~~--~~~~~~~~~~~  232 (233)
                      .+.+.....+.  ++-.++|.++|
T Consensus       327 ~~~~~s~~~~~~~a~a~G~p~~~V  350 (868)
T 2yic_A          327 PTDSRSSEYCTDVAKMIGAPIFHV  350 (868)
T ss_dssp             HHHHCSSSSTTGGGGGGTCCEEEE
T ss_pred             ccccccccCHHHHHHhCCCcEEEE
Confidence            76565544443  44556777765

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=5.3e-37  Score=315.14  Aligned_cols=216  Identities=15%  Similarity=0.117  Sum_probs=170.7

Q ss_pred             CeeEEeCCCCC-CCC----CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhcc---
Q 026778           13 PCYRVLDDDGQ-PFP----DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI---   84 (233)
Q Consensus        13 ~~~~vl~~~g~-~~~----~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL---   84 (233)
                      +..++.|++++ ++.    ... +.+|+|+++++|+.|+++|.||+++..++++|+.   ++..||||+++|++.+|   
T Consensus       336 e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~---~g~~GqEa~~~g~~~~l~~~  411 (1113)
T 2xt6_A          336 EYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVIDQC  411 (1113)
T ss_dssp             ECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHHHH
T ss_pred             ceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHHHh
Confidence            44556666654 221    112 6799999999999999999999999999999885   23499999999998775   


Q ss_pred             ---CCCCeEec-CCccchhhhh--cCCCHHHHHHHHhcCCCCC-C-CCCCCCcccCCCc------------ccccccccc
Q 026778           85 ---KNDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSST  144 (233)
Q Consensus        85 ---~~~D~~~~-~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~-~-~Gr~~~~H~~~~~------------~~~~~~~g~  144 (233)
                         +++|++++ +||+|++.|+  +|+|++++|+|++|+.+++ + +|+++++|++...            .++.+.+|+
T Consensus       412 ~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~  491 (1113)
T 2xt6_A          412 AEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSH  491 (1113)
T ss_dssp             HHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSS
T ss_pred             hhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcc
Confidence               48999998 8999999999  9999999999999999887 3 5677789986533            345677899


Q ss_pred             CCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc-cchhhHHHHHHHHHHcCCC---EEEEEecCCcccccc
Q 026778          145 IATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG-TSEGDFHAALNFSAVTEAP---VIFICRNNGWAISTP  210 (233)
Q Consensus       145 lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~-~~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~~  210 (233)
                      +|+++|+|+|+|+|.|+++          .+.+++|++|||+ ++||.||||||+|+.|++|   +||||+||+|+|+++
T Consensus       492 Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~  571 (1113)
T 2xt6_A          492 LEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTA  571 (1113)
T ss_dssp             TTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBC
T ss_pred             ccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccC
Confidence            9999999999999999876          5789999999999 5999999999999999999   999999999999998


Q ss_pred             ccccccCCCch--hhhcccccccc
Q 026778          211 ISDQFRSIPSL--PCLSNILTILL  232 (233)
Q Consensus       211 ~~~q~~~~~~~--~~~~~~~~~~~  232 (233)
                      .+.+.....+.  ++-.++|.++|
T Consensus       572 ~~~~~s~~~~~~~a~a~G~p~~~V  595 (1113)
T 2xt6_A          572 PTDSRSSEYCTDVAKMIGAPIFHV  595 (1113)
T ss_dssp             HHHHCSSSSTTGGGGGGTCCEEEE
T ss_pred             ccccccccCHHHHHHhcCCcEEEE
Confidence            76565444443  34456777664

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=99.94  E-value=3.6e-27  Score=229.85  Aligned_cols=185  Identities=15%  Similarity=0.140  Sum_probs=135.3

Q ss_pred             CCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCe
Q 026778           11 RIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDF   89 (233)
Q Consensus        11 ~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~   89 (233)
                      ++|.+.+|+   ++..|.+.+.++.++|.++++.|   |.+..++..  ++  .|+++++.|+|++.+++..+++ +.|+
T Consensus         4 ~~~~~~~l~---~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~~--~Gh~~~~lg~~~~~~~l~~~~~~~~D~   73 (621)
T 2o1s_A            4 DIAKYPTLA---LVDSTQELRLLPKESLPKLCDEL---RRYLLDSVS--RS--SGHFASGLGTVELTVALHYVYNTPFDQ   73 (621)
T ss_dssp             CTTTSTTGG---GCSSHHHHTTSCGGGHHHHHHHH---HHHHHHHSC--GG--GCTHHHHHTTHHHHHHHHHHSCTTTSE
T ss_pred             CCCCCchhh---hcCChHHhhhCCHHHHHHHHHHH---HHHHHHHHh--hc--CCCcCCChhHHHHHHHHHhccCCCCCE
Confidence            345555565   34444566789999999999999   776655542  22  3788899999999999999999 8999


Q ss_pred             Ee--cCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCC--CccccccccccCCCCchhhhHHHHHhhhcCCC
Q 026778           90 VV--PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS--NKHNYFTVSSTIATQLPHAVGAAYALKMDRKD  165 (233)
Q Consensus        90 ~~--~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~--~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~  165 (233)
                      ++  ..||++++.+.+|. .+++ .. +-...    |.  +.|...  .+.. ...+|++|+++|.|+|+|+|.|+++.+
T Consensus        74 ~v~~~gH~~y~~~~l~G~-~~~~-~~-~r~~~----g~--~g~~~~~~s~~~-~~~~G~~G~gl~~A~G~AlA~~~~~~~  143 (621)
T 2o1s_A           74 LIWDVGHQAYPHKILTGR-RDKI-GT-IRQKG----GL--HPFPWRGESEYD-VLSVGHSSTSISAGIGIAVAAEKEGKN  143 (621)
T ss_dssp             EEESSSTTCHHHHHTTTT-GGGG-GG-TTSTT----SC--CSSCCTTTCTTC-CSCCSSSSCHHHHHHHHHHHHHHHTSC
T ss_pred             EEEeCchHHHHHHHHhCC-Hhhh-hc-ccccC----CC--CCCCCCCCCCCC-ccCCcccchHHHHHHHHHHHHHHhCCC
Confidence            99  77999999999997 2221 11 11111    11  112111  1233 446999999999999999999999999


Q ss_pred             CeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccc
Q 026778          166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF  215 (233)
Q Consensus       166 ~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~  215 (233)
                      +.|+|++|||++++|++||+||+|+.|++|+||||+||+|+|++++..+.
T Consensus       144 ~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~  193 (621)
T 2o1s_A          144 RRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALN  193 (621)
T ss_dssp             CCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC-----------
T ss_pred             CeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHH
Confidence            99999999999999999999999999999999999999999999887653

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=99.91  E-value=1.9e-25  Score=218.06  Aligned_cols=171  Identities=16%  Similarity=0.108  Sum_probs=135.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecCCccch---hhhh
Q 026778           27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPG---VLLW  102 (233)
Q Consensus        27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~yR~~~---~~l~  102 (233)
                      +.+.+.++.++|.++|+.|   |.+...+..   + ..|+++++.|+-.+.+++...++ ++|+++.+ |+|+   +.+.
T Consensus        19 p~d~~~l~~~~l~~l~~~i---R~~~~~~~~---~-~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l   90 (629)
T 2o1x_A           19 PKDLKRLSREQLPALTEEL---RGEIVRVCS---R-GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKIL   90 (629)
T ss_dssp             HHHHTTSCGGGHHHHHHHH---HHHHHHHHT---T-SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHT
T ss_pred             hhhhhhCCHHHHHHHHHHH---HHHHHHHHH---h-cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHH
Confidence            3456678999999999999   766544442   2 24678888998555444444458 89999999 9996   6677


Q ss_pred             cCC-CHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhh
Q 026778          103 RGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD  181 (233)
Q Consensus       103 rG~-~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~  181 (233)
                      +|. +.-+.+.++.|. +|+++++. ++       ++...+|++|+++|.|+|+|+|.|+++.++.|+|++|||++++|+
T Consensus        91 ~G~~~~~~~~r~~~g~-~G~p~~~~-s~-------~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~  161 (629)
T 2o1x_A           91 TGRRDQMADIKKEGGI-SGFTKVSE-SE-------HDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGM  161 (629)
T ss_dssp             TTTGGGGGGTTSTTSC-CSSCCGGG-CT-------TCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHH
T ss_pred             hCcHhHHhCcccCCCC-CCCCCCCC-CC-------CCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccH
Confidence            786 444445666654 35544432 22       346678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEecCCcccccccccc
Q 026778          182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQ  214 (233)
Q Consensus       182 ~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q  214 (233)
                      +||+||+|+.|++|+||||+||+|+|++++..+
T Consensus       162 ~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~  194 (629)
T 2o1x_A          162 ALAALNTIGDMGRKMLIVLNDNEMSISENVGAM  194 (629)
T ss_dssp             HHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSH
T ss_pred             HHHHHHHHHhhCCCEEEEEECCCCCCCCChhHH
Confidence            999999999999999999999999999988744

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=99.82  E-value=5e-20  Score=182.04  Aligned_cols=175  Identities=15%  Similarity=0.137  Sum_probs=127.8

Q ss_pred             HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccch------hhhhcC--CCHHH
Q 026778           47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPG------VLLWRG--FSMQE  109 (233)
Q Consensus        47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~------~~l~rG--~~~~~  109 (233)
                      .+|.+-..+......|+++...++.  |.+.+.....|+         +.|.++.+ -+|+      ++...|  ++.++
T Consensus        29 ~iR~~~~~~v~~a~sGH~g~~ls~a--~i~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~~~  105 (700)
T 3rim_A           29 TIRVLAADAVQKVGNGHPGTAMSLA--PLAYTLFQRTMRHDPSDTHWLGRDRFVLS-AGHSSLTLYIQLYLGGFGLELSD  105 (700)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEES-STTCHHHHHHHHHHTTSSCCHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCccHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEEC-CCchhHHHHHHHHHhCCCCCHHH
Confidence            4566655555544567776665554  555544444676         35887765 3454      344466  46665


Q ss_pred             HHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhc-------------CCCCeEEEEEcCC
Q 026778          110 FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMD-------------RKDACAVTYFGDG  175 (233)
Q Consensus       110 ~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~-------------~~~~vvv~~~GDG  175 (233)
                      + .. |-+.     |...+.|... ...++..++|++|++++.|+|+|+|.|++             +.+++|+|++|||
T Consensus       106 l-~~-fr~~-----gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG  178 (700)
T 3rim_A          106 I-ES-LRTW-----GSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG  178 (700)
T ss_dssp             H-TT-TTST-----TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred             H-HH-hhcC-----CCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence            3 22 3332     2223556543 34689999999999999999999999985             5688999999999


Q ss_pred             ccchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          176 GTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       176 ~~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      ++++|.+|||+|+|++|+|| +|+||+||+|+|+++++.+. .++++++++  +|+.+.|
T Consensus       179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V  237 (700)
T 3rim_A          179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEV  237 (700)
T ss_dssp             HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEE
T ss_pred             ccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHHHcCCeEEEE
Confidence            99999999999999999997 99999999999999998764 788888886  4555543

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=99.78  E-value=1.3e-18  Score=169.63  Aligned_cols=189  Identities=17%  Similarity=0.128  Sum_probs=133.0

Q ss_pred             CCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh---
Q 026778           32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV---   99 (233)
Q Consensus        32 ~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~---   99 (233)
                      .+++..+.+|-+....+|.+-..+......|.++...++.  |.+.+-....|+  |       .|.++.+ -+|+.   
T Consensus         4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~--e~~~~L~~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~l   80 (616)
T 3mos_A            4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAA--EIMAVLFFHTMRYKSQDPRNPHNDRFVLS-KGHAAPIL   80 (616)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTH--HHHHHHHHTTCBCCTTCTTCTTSCEEEES-SGGGHHHH
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHH--HHHHHHHHHhhccCCCCCCCCCCCeEEEc-CccHHHHH
Confidence            4566666666666677787766655554557766555554  555443334453  2       5887766 36664   


Q ss_pred             ---hhhcCC-CHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCC-CCeEEEEEcC
Q 026778          100 ---LLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGD  174 (233)
Q Consensus       100 ---~l~rG~-~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~-~~vvv~~~GD  174 (233)
                         +...|. +.++ |.. |-+     .|...+.|......++...+|++|+++|.|+|+|+|.++.+. ++.|+|++||
T Consensus        81 y~~~~l~G~~~~~~-l~~-~r~-----~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GD  153 (616)
T 3mos_A           81 YAVWAEAGFLAEAE-LLN-LRK-----ISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGD  153 (616)
T ss_dssp             HHHHHHTTSSCGGG-GGG-TTC-----TTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEET
T ss_pred             HHHHHHcCCCCHHH-HHH-hcc-----CCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence               334564 4443 222 222     133345565444567777899999999999999999997666 5899999999


Q ss_pred             CccchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhc--ccccc
Q 026778          175 GGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTI  230 (233)
Q Consensus       175 G~~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~  230 (233)
                      |++++|.+||+||+|+.|+|| +|+|++||+|+|+.++..+...++++++++  +|+.+
T Consensus       154 G~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~  212 (616)
T 3mos_A          154 GELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAI  212 (616)
T ss_dssp             GGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEE
T ss_pred             cccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEE
Confidence            999999999999999999998 788999999999999888776666766654  44444

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.78  E-value=8.7e-19  Score=172.52  Aligned_cols=175  Identities=19%  Similarity=0.210  Sum_probs=127.1

Q ss_pred             HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCC---------CCeEecCCccchh------hhhcCC--CH
Q 026778           45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN---------DDFVVPQYREPGV------LLWRGF--SM  107 (233)
Q Consensus        45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~---------~D~~~~~yR~~~~------~l~rG~--~~  107 (233)
                      ...+|.+-..+......|++|...++.  |.+.+.....|+-         .|.++.+ .+|+.      +...|.  +.
T Consensus        10 a~~iR~~~~~~v~~a~~GH~g~~ls~a--~~~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~   86 (673)
T 1r9j_A           10 ANCIRCLAADIVQGGKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMS-NGHGCALQYALLHMAGYNLTM   86 (673)
T ss_dssp             HHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred             HHHHHHHHHHHHHHcCCCCcchhHHHH--HHHHHHHHHhhCCCCCCCCCCCCCeEEEc-cccHHHHHHHHHHHcCCCCCH
Confidence            344565555555554678777666664  6665555555652         2776655 35653      334565  45


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccCCC-ccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc
Q 026778          108 QEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG  176 (233)
Q Consensus       108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~  176 (233)
                      +++. . |.+.     |...+.|.... ..++...+|++|+++|.|+|+|+|.|+.+          .+++|+|++|||+
T Consensus        87 ~~l~-~-~r~~-----~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~  159 (673)
T 1r9j_A           87 DDLK-G-FRQD-----GSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGC  159 (673)
T ss_dssp             HHHH-T-TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred             HHHH-h-hccC-----CCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcch
Confidence            5543 2 3332     22334565432 35888999999999999999999999865          6889999999999


Q ss_pred             cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc--cccc
Q 026778          177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN--ILTI  230 (233)
Q Consensus       177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~--~~~~  230 (233)
                      +++|.+|||+|+|+.++|| +||||+||+|+|++++..++ .+++++++++  |+.+
T Consensus       160 ~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~  215 (673)
T 1r9j_A          160 LMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVI  215 (673)
T ss_dssp             HHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEE
T ss_pred             hcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCCeEE
Confidence            9999999999999999997 99999999999999999887 7888877765  4444

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=99.75  E-value=2.3e-18  Score=169.58  Aligned_cols=171  Identities=19%  Similarity=0.206  Sum_probs=120.2

Q ss_pred             HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHh-ccCC-------CCeEecCCccchh------hhhcCC--CHH
Q 026778           45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA-AIKN-------DDFVVPQYREPGV------LLWRGF--SMQ  108 (233)
Q Consensus        45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~-aL~~-------~D~~~~~yR~~~~------~l~rG~--~~~  108 (233)
                      ...+|.+-..+......|+++...+..  |.+.+.... ..+|       .|.++.+ -+|+.      ....|.  +.+
T Consensus        12 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~lYa~~~l~G~~~~~~   88 (680)
T 1gpu_A           12 VSTIRILAVDTVSKANSGHPGAPLGMA--PAAHVLWSQMRMNPTNPDWINRDRFVLS-NGHAVALLYSMLHLTGYDLSIE   88 (680)
T ss_dssp             HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHTTCSCCHH
T ss_pred             HHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHhCCCCccCCCCCCCCEEEEe-cchHHHHHHHHHHHhCCCCCHH
Confidence            445566655555544566665544333  443332222 2233       5777666 35553      344565  455


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCccc
Q 026778          109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTS  178 (233)
Q Consensus       109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~~~  178 (233)
                      ++ .. |-+.     |...+.|......++...+|++|+++|.|+|+|+|.++++          .+++|+|++|||+++
T Consensus        89 ~l-~~-~r~~-----g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~  161 (680)
T 1gpu_A           89 DL-KQ-FRQL-----GSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQ  161 (680)
T ss_dssp             HH-TT-TTCT-----TCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH
T ss_pred             HH-Hh-hccc-----CCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccc
Confidence            43 22 3332     2223557655567899999999999999999999999765          478999999999999


Q ss_pred             hhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778          179 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       179 ~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      +|.+|||+|+|+.++|| +||||+||+|+|++++..++ .+++++++++
T Consensus       162 eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a  209 (680)
T 1gpu_A          162 EGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEA  209 (680)
T ss_dssp             SHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHh
Confidence            99999999999999998 99999999999999988765 5677766654

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.75  E-value=3.3e-18  Score=168.43  Aligned_cols=183  Identities=17%  Similarity=0.161  Sum_probs=126.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh-
Q 026778           30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV-   99 (233)
Q Consensus        30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~-   99 (233)
                      -+.++.++|.++   ...+|.+-..+......|+++...++.  |.+.+.....|+         +.|.++.+ -+|+. 
T Consensus         8 ~~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls-~GH~~~   81 (675)
T 1itz_A            8 GKAATGELLEKS---VNTIRFLAIDAVEKANSGHPGLPMGCA--PMGHVLYDEVMRYNPKNPYWFNRDRFVLS-AGHGCM   81 (675)
T ss_dssp             --CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHH
T ss_pred             cCCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccCccHhHH--HHHHHHHHHHhcCCcCCCCCCCCCeEEEc-CcchHH
Confidence            467888888754   455677665555554567666554433  444333322243         23776655 35553 


Q ss_pred             -----hhhcCC---CHHHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcC-------
Q 026778          100 -----LLWRGF---SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR-------  163 (233)
Q Consensus       100 -----~l~rG~---~~~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~-------  163 (233)
                           +...|.   +.++ |.. |-+.     |...+.|... ...++...+|++|+++|.|+|+|+|.|+++       
T Consensus        82 ~lYa~l~l~G~~~~~~~~-l~~-~r~~-----~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~  154 (675)
T 1itz_A           82 LQYALLHLAGYDSVKEED-LKQ-FRQW-----GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPD  154 (675)
T ss_dssp             HHHHHHHHHTCTTCCHHH-HTT-TTST-----TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTT
T ss_pred             HHHHHHHHcCCCCCCHHH-HHh-cccC-----CCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccc
Confidence                 334565   4344 322 3222     1122345432 235888899999999999999999999876       


Q ss_pred             ---CCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCCCchhhhcc
Q 026778          164 ---KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       164 ---~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                         .++.|+|++|||++++|++|||+|+|+.++| |+|+||+||+|+|+.++.... .+++++++++
T Consensus       155 ~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a  220 (675)
T 1itz_A          155 SEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEA  220 (675)
T ss_dssp             BCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHH
T ss_pred             cCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHh
Confidence               6889999999999999999999999999999 699999999999999988765 6777776654

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=99.74  E-value=3.1e-18  Score=168.36  Aligned_cols=173  Identities=18%  Similarity=0.217  Sum_probs=114.4

Q ss_pred             HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CHHH
Q 026778           47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SMQE  109 (233)
Q Consensus        47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~~~  109 (233)
                      .+|.+-..+......|+++...++.  |.+.+.....|+         +.|.++.+ -+|+.      +...|.  +.++
T Consensus        12 ~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~~~   88 (663)
T 3kom_A           12 AIRFLSIDATLKAKSGHPGMPMGMA--DIATVLWTKFLKHNPNNPHWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSIED   88 (663)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEEC-SSSCHHHHHHHHHHHTCSCCHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCccHHHH--HHHHHHHhhheeeCCCCCCCCCCCeEEEe-CCcccHHHHHHHHHhCCCCCHHH
Confidence            4455544444443456655444332  444333333554         35888766 35553      334564  5555


Q ss_pred             HHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCccc
Q 026778          110 FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGTS  178 (233)
Q Consensus       110 ~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~~~  178 (233)
                      + .. |-+.++     ..+.|... ...++...+|++|+++|.|+|+|+|.|+++.          ++.|+|++|||+++
T Consensus        89 l-~~-~r~~~s-----~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~  161 (663)
T 3kom_A           89 I-KN-FRQLHS-----KTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLM  161 (663)
T ss_dssp             H-TT-TTSTTC-----SCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHH
T ss_pred             H-Hh-hccCCC-----CCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhh
Confidence            3 22 333222     22445432 2458888999999999999999999998764          78999999999999


Q ss_pred             hhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc--cccc
Q 026778          179 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN--ILTI  230 (233)
Q Consensus       179 ~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~--~~~~  230 (233)
                      +|.+|||||+|+.++|| +|+|++||+|+|+.++..+. .+++++++++  |+.+
T Consensus       162 eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~  215 (663)
T 3kom_A          162 EGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAYGWHVI  215 (663)
T ss_dssp             SHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHTTCEEE
T ss_pred             hchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHCCCeEE
Confidence            99999999999999998 89999999999999988764 6778777753  4444

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=99.74  E-value=5.4e-18  Score=166.22  Aligned_cols=171  Identities=17%  Similarity=0.178  Sum_probs=116.3

Q ss_pred             HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CH
Q 026778           45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SM  107 (233)
Q Consensus        45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~  107 (233)
                      ...+|.+-..+......|+++...+..  |.+.+.....|+         +.|.++.+ -+|+.      +...|.  +.
T Consensus        12 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls-~GH~~~~lYa~l~l~G~~~~~   88 (651)
T 2e6k_A           12 VNAIRFLAIDAVEKARSGHPGMPMGMA--PLAYLLFREVMRHNPLDPDWPDRDRFVLS-AGHGSMLLYAVLHLTGYDLPL   88 (651)
T ss_dssp             HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHTTCSCCH
T ss_pred             HHHHHHHHHHHHHHcCCCccCcchhHH--HHHHHHHHHHhcCCccCCCCCCCCeEEEe-CcchhHHHHHHHHHhCCCCCH
Confidence            344565544444444566655443332  333322222243         23776655 35553      334565  44


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc
Q 026778          108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG  176 (233)
Q Consensus       108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~  176 (233)
                      ++ |.. |-+.++.     .+.|... ...++...+|++|+++|.|+|+|+|.++++          .++.|+|++|||+
T Consensus        89 ~~-l~~-~r~~~~~-----~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~  161 (651)
T 2e6k_A           89 EE-LKS-FRQWGSK-----TPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGD  161 (651)
T ss_dssp             HH-HTT-TTSTTCS-----CCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred             HH-HHH-hhccCCC-----CCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhh
Confidence            44 322 3222221     1334432 235888999999999999999999999766          6889999999999


Q ss_pred             cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778          177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      +++|.+|||+|+|+.++|| +||||+||+|+|++++..++ .+++++++++
T Consensus       162 ~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a  211 (651)
T 2e6k_A          162 LMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRA  211 (651)
T ss_dssp             HHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHH
T ss_pred             hchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHh
Confidence            9999999999999999998 99999999999999998876 6777776654

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=99.74  E-value=4.4e-18  Score=166.50  Aligned_cols=170  Identities=19%  Similarity=0.208  Sum_probs=120.2

Q ss_pred             HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccch------hhhhcCC--CH
Q 026778           45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPG------VLLWRGF--SM  107 (233)
Q Consensus        45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~------~~l~rG~--~~  107 (233)
                      ...+|.+-..+......|+++...+..  |.+. ++...|+         +.|.++.+ -+|+      ++...|.  +.
T Consensus        10 a~~iR~~~i~~v~~a~~GH~g~~lg~~--ei~~-~L~~~~~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~   85 (632)
T 3l84_A           10 ANTLRFLSADMVQKANSGHPGAPLGLA--DILS-VLSYHLKHNPKNPTWLNRDRLVFS-GGHASALLYSFLHLSGYDLSL   85 (632)
T ss_dssp             HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHH-HHTTTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcChhHH--HHHH-HHHHHhCcCCCCCCCCCCCEEEEc-CCcccHHHHHHHHHhCCCCCH
Confidence            445566655554444456655443332  4333 3355565         46888776 3555      3344564  55


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCC-------CCeEEEEEcCCccchh
Q 026778          108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEG  180 (233)
Q Consensus       108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~-------~~vvv~~~GDG~~~~G  180 (233)
                      +++ .. |-+.++.     .+.|......++...+|++|+++|.|+|+|+|.++++.       ++.|+|++|||++++|
T Consensus        86 ~~l-~~-~r~~~s~-----~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG  158 (632)
T 3l84_A           86 EDL-KN-FRQLHSK-----TPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEG  158 (632)
T ss_dssp             HHH-TT-TTCTTCS-----SCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSH
T ss_pred             HHH-HH-HhcCCCC-----CCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhc
Confidence            553 22 3333222     23454444568888999999999999999999998764       8899999999999999


Q ss_pred             hHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778          181 DFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       181 ~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      .+|||+|+|+.++|| +|+|++||+|+|+.++.... .+++++++++
T Consensus       159 ~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a  204 (632)
T 3l84_A          159 ISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEA  204 (632)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHH
Confidence            999999999999997 89999999999999987764 5777777654

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=99.73  E-value=1e-17  Score=165.86  Aligned_cols=176  Identities=18%  Similarity=0.205  Sum_probs=124.3

Q ss_pred             HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CH
Q 026778           45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SM  107 (233)
Q Consensus        45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~  107 (233)
                      ...+|.+-..+......|.++...++.  |.+.+.....|+         +.|.++.+ -+|+.      +...|.  +.
T Consensus        49 a~~iR~~~i~~v~~a~~GH~g~~l~~a--ei~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~  125 (711)
T 3uk1_A           49 ANAIRALAMDAVQQANSGHPGMPMGMA--EIGVALWSRHLKHNPTNPHWADRDRFVLS-NGHGSMLLYSLLHLTGYDLPI  125 (711)
T ss_dssp             HHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHHTCCCCTTCTTCTTCCEEEEC-SGGGHHHHHHHHHHHTCSCCH
T ss_pred             HHHHHHHHHHHHHhcCCCccCchHHHH--HHHHHHHhhhEeeCCCCCCCCCCCeEEEe-CCcccHHHHHHHHHhCCCCCH
Confidence            334565554444444567766555554  555444433554         35888766 46664      334565  55


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCc
Q 026778          108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGG  176 (233)
Q Consensus       108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~  176 (233)
                      +++ .. |-+.++.+     +.|... ...|+...+|++|+++|.|+|+|+|.++++.          ++.|+|++|||+
T Consensus       126 ~~l-~~-~r~~~s~~-----~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~  198 (711)
T 3uk1_A          126 EEL-KN-FRQLHSKT-----PGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGC  198 (711)
T ss_dssp             HHH-HT-TTSTTCSC-----CSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred             HHH-Hh-hccccCCC-----CCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcc
Confidence            553 32 43332222     345432 3468888999999999999999999998764          789999999999


Q ss_pred             cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhc--cccccc
Q 026778          177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTIL  231 (233)
Q Consensus       177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~  231 (233)
                      +++|.+||+||+|+.++|| +|+|++||+|+|+.++..+. .++++++++  +|+.+.
T Consensus       199 l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~  255 (711)
T 3uk1_A          199 LMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAYGWNVIP  255 (711)
T ss_dssp             HHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEE
T ss_pred             hhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHcCCcEEE
Confidence            9999999999999999998 99999999999999988774 577877775  455443

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=99.72  E-value=1.5e-17  Score=163.59  Aligned_cols=171  Identities=18%  Similarity=0.233  Sum_probs=117.5

Q ss_pred             HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh------hhhcCC--CH
Q 026778           45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRGF--SM  107 (233)
Q Consensus        45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~------~l~rG~--~~  107 (233)
                      ...+|.+-..+......|.++...+..  |.+.+.....|+  |       .|.++.+ -+|+.      +...|.  +.
T Consensus         8 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~lYa~~~l~G~~~~~   84 (669)
T 2r8o_A            8 ANAIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLKHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPM   84 (669)
T ss_dssp             HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred             HHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHHhhcCCcCCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCCH
Confidence            344566555555444566665544332  333332223343  3       4776665 35653      344454  55


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccCCC-ccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc
Q 026778          108 QEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG  176 (233)
Q Consensus       108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~  176 (233)
                      +++ .. |-+.++     ..+.|.... ..++...+|++|+++|.|+|+|+|.++++          .++.|+|++|||+
T Consensus        85 ~~l-~~-~r~~~~-----~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~  157 (669)
T 2r8o_A           85 EEL-KN-FRQLHS-----KTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC  157 (669)
T ss_dssp             HHH-TT-TTSTTC-----SCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred             HHH-HH-hhcCCC-----CCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhH
Confidence            543 22 333222     123465322 46889999999999999999999998765          4789999999999


Q ss_pred             cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778          177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      +++|++|||+|+|+.++|| +||||+||+|+|+.++..+. .+++++++++
T Consensus       158 ~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a  207 (669)
T 2r8o_A          158 MMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEA  207 (669)
T ss_dssp             HHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHH
T ss_pred             hcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHH
Confidence            9999999999999999998 99999999999999988765 5677766654

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*

Probab=99.72  E-value=2e-17  Score=167.05  Aligned_cols=178  Identities=13%  Similarity=0.128  Sum_probs=121.9

Q ss_pred             HHHHhHHHHHHHHH-Hh-----cCcccccccCcchHHHHHHHHhccC------CCCeEecCCccchh------hhhcCCC
Q 026778           45 MVTLQTMDTIFYEA-QR-----QGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQYREPGV------LLWRGFS  106 (233)
Q Consensus        45 M~~~R~~d~~~~~l-~r-----~G~i~~~~~~~GqEa~~vg~~~aL~------~~D~~~~~yR~~~~------~l~rG~~  106 (233)
                      ...+|.+-..+... .+     .|+++.+.+..  |...++....++      ++|.|+..  +|+.      ++..|.-
T Consensus        82 a~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~a--el~~~l~~~~~~~~~~~~~~D~V~~~--GH~sp~~Ya~~~l~Gr~  157 (886)
T 2qtc_A           82 RSAIRWNAIMTVLRASKKDLELGGHMASFQSSA--TIYDVCFNHFFRARNEQDGGDLVYFQ--GHISPGVYARAFLEGRL  157 (886)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHH--HHHHHHHHHTCCCCCSSSCCCEEECC--GGGHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEEc--chhHHHHHHHHHHhCCC
Confidence            34456554444333 22     47777666655  776666556577      57866665  5554      6677864


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcccCCC--ccccccccccCCCCchhhhHHHHHhhh-------cCCCCeEEEEEcCCcc
Q 026778          107 MQEFANQCFGNKADYGKGRQMPIHYGSN--KHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGT  177 (233)
Q Consensus       107 ~~~~l~e~~g~~~g~~~Gr~~~~H~~~~--~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vvv~~~GDG~~  177 (233)
                      ..+-|.. |-+...   +.+.|.|....  +.++...+|++|++++.|+|+|++.|+       ++.++.|+|++|||++
T Consensus       158 ~~e~l~~-fRq~~~---~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l  233 (886)
T 2qtc_A          158 TQEQLDN-FRQEVH---GNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEM  233 (886)
T ss_dssp             CHHHHTT-BTCCTT---SSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGG
T ss_pred             CHHHHHh-ccCCCC---CCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccc
Confidence            3333443 322211   12233332211  124778899999999999999999998       7889999999999999


Q ss_pred             chhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccc-cCCCchhhhc--ccccc
Q 026778          178 SEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQF-RSIPSLPCLS--NILTI  230 (233)
Q Consensus       178 ~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~-~~~~~~~~~~--~~~~~  230 (233)
                      ++|++|||||+|+.++|| +||||+||+|+|+.|+.... ..+.+..++.  +|..|
T Consensus       234 ~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~  290 (886)
T 2qtc_A          234 DEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVI  290 (886)
T ss_dssp             GSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEE
T ss_pred             cccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEE
Confidence            999999999999999996 99999999999999988642 3455555553  34444

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=99.71  E-value=2.7e-17  Score=162.39  Aligned_cols=174  Identities=18%  Similarity=0.184  Sum_probs=121.1

Q ss_pred             HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcC--CCHHH
Q 026778           47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRG--FSMQE  109 (233)
Q Consensus        47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG--~~~~~  109 (233)
                      .+|.+-..+......|.++...++.  |.+.+.....|+         +.|.++.+ .+|+.      +...|  ++.++
T Consensus        36 ~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~~~  112 (690)
T 3m49_A           36 TIRTLSIDAIEKANSGHPGMPMGAA--PMAYTLWTQFMKHNPNNPTWFNRDRFVLS-AGHGSMLLYSLLHLSGYDVTMDD  112 (690)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHTTSSCCHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCcchHHH--HHHHHHHHHHhcCCCCCCCCCCCCeEEEC-CccHHHHHHHHHHHHCCCCCHHH
Confidence            4565555554444556665444333  444443334666         46887766 36653      33456  45666


Q ss_pred             HHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCccc
Q 026778          110 FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGTS  178 (233)
Q Consensus       110 ~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~~~  178 (233)
                      +. . |-+.     |...+.|... ...++...+|++|+++|.|+|+|+|.|+++.          ++.|+|++|||+++
T Consensus       113 l~-~-~rq~-----gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~  185 (690)
T 3m49_A          113 LK-N-FRQW-----GSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLM  185 (690)
T ss_dssp             HT-T-TTCT-----TCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHH
T ss_pred             HH-h-hccC-----CCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhh
Confidence            32 2 3222     2222345433 3467888999999999999999999997653          88999999999999


Q ss_pred             hhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhc--cccccc
Q 026778          179 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTIL  231 (233)
Q Consensus       179 ~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~  231 (233)
                      +|.+|||+++|+.++|| +|+|++||+|+|+.++... ..++++++++  +|+.+.
T Consensus       186 eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~  240 (690)
T 3m49_A          186 EGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRS-FSESVEDRYKAYGWQVIR  240 (690)
T ss_dssp             SHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGT-CCCCHHHHHHHHTCEEEE
T ss_pred             hccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhc-cchhHHHHHHHcCCcEEE
Confidence            99999999999999997 8999999999999998765 4577777765  344443

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*

Probab=99.13  E-value=1.8e-11  Score=122.83  Aligned_cols=97  Identities=18%  Similarity=0.252  Sum_probs=84.8

Q ss_pred             CCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhh---HHHHHHHHHHcCC-CEEEEEec
Q 026778          127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSAVTEA-PVIFICRN  202 (233)
Q Consensus       127 ~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~---~~Ealn~A~~~~l-Pvvfvv~n  202 (233)
                      .+.|....-.|+...+|+||+++++|+|+|+    .+.+..|+|++|||+..+|.   .||+.++|..+++ +++.|+++
T Consensus       159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~  234 (845)
T 3ahc_A          159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL  234 (845)
T ss_dssp             BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred             CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence            5678755557999999999999999999994    46678999999999999999   9999999999999 58889999


Q ss_pred             CCccccccccc-cccCCCchhhhccc
Q 026778          203 NGWAISTPISD-QFRSIPSLPCLSNI  227 (233)
Q Consensus       203 N~~ais~~~~~-q~~~~~~~~~~~~~  227 (233)
                      |+++|+.|+.. .+..+++.+|+.++
T Consensus       235 N~~~i~g~t~l~~~~~e~l~~rf~a~  260 (845)
T 3ahc_A          235 NGYKIANPTILARISDEELHDFFRGM  260 (845)
T ss_dssp             CSBSSSSBCHHHHSCHHHHHHHHHHT
T ss_pred             CCCcCCCCccccccCcHHHHHHHHHC
Confidence            99999999974 35678888888763

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=98.90  E-value=4.8e-10  Score=108.40  Aligned_cols=60  Identities=23%  Similarity=0.322  Sum_probs=50.2

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAI  207 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ai  207 (233)
                      .+++|.++|.|+|++++.    +++.|+|++|||+++++  +++|++|+.+++|+++||.|| +|++
T Consensus       419 ~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~  479 (603)
T 4feg_A          419 FATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGF  479 (603)
T ss_dssp             SCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH
T ss_pred             cccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHH
Confidence            567888788788877775    46789999999999987  777999999999988888777 5987

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=98.88  E-value=3.9e-10  Score=107.84  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP  210 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~  210 (233)
                      ..+.+|.++|.|+|+|+|.+.+++++.|+|++|||++..+  +++|++|+.+++|+++||.|| +|+|...
T Consensus       411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~  479 (563)
T 2vk8_A          411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKL  479 (563)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred             chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhh
Confidence            5689999999999999999988888999999999999886  788999999999977766555 6998653

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=98.77  E-value=1.4e-09  Score=103.14  Aligned_cols=63  Identities=25%  Similarity=0.348  Sum_probs=54.9

Q ss_pred             ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 026778          143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI  211 (233)
Q Consensus       143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~~  211 (233)
                      +.+|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|+.+++|+++||.|| +|++....
T Consensus       401 g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~  464 (528)
T 1q6z_A          401 GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWF  464 (528)
T ss_dssp             CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred             ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHH
Confidence            899999999999999863    5679999999999998  899999999999988877666 69997654

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=98.73  E-value=3e-09  Score=101.78  Aligned_cols=66  Identities=18%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP  210 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~  210 (233)
                      ..+.+|.++|.|+|+|+|.|  +.++.|+|++|||++..+  +++|++|..+++|+++|| +||+|++...
T Consensus       417 g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~  483 (563)
T 2uz1_A          417 YLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLH  483 (563)
T ss_dssp             TTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred             CCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence            35889999999999999986  567899999999999987  678999999999976665 5557998765

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=98.71  E-value=3.4e-09  Score=102.54  Aligned_cols=64  Identities=20%  Similarity=0.137  Sum_probs=54.2

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP  210 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~  210 (233)
                      .+|++|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|+.+++|+++||.|| +|+|...
T Consensus       440 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~  504 (616)
T 2pan_A          440 QAGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQ  504 (616)
T ss_dssp             TTCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHH
T ss_pred             CcccccchHHHHHHHHHhCC----CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHH
Confidence            46889999999999999963    6789999999999987  679999999999986666555 6998643

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=98.71  E-value=4.8e-09  Score=101.17  Aligned_cols=65  Identities=22%  Similarity=0.254  Sum_probs=55.6

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEe-cCCccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPI  211 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~-nN~~ais~~~  211 (233)
                      ..+.+|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|+.+++|+++||. ||+|++....
T Consensus       411 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~  476 (590)
T 1v5e_A          411 LFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNK  476 (590)
T ss_dssp             SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGT
T ss_pred             CCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHH
Confidence            46899999999999999863    6789999999999988  6999999999999777664 5579998754

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=98.67  E-value=5.7e-09  Score=100.08  Aligned_cols=64  Identities=23%  Similarity=0.323  Sum_probs=54.2

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP  210 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~  210 (233)
                      ..+.+|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|..+++|+++||.|| +|++...
T Consensus       418 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~  482 (566)
T 1ozh_A          418 GQQTMGVALPWAIGAWLVNP----ERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAI  482 (566)
T ss_dssp             TTCCTTCHHHHHHHHHHHST----TSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHH
T ss_pred             CcccccchHHHHHHHHHhCC----CCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHH
Confidence            46889999999999999863    6789999999999886  577999999999987766555 6988764

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=98.64  E-value=6.4e-09  Score=99.77  Aligned_cols=64  Identities=23%  Similarity=0.307  Sum_probs=54.4

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP  210 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~  210 (233)
                      ..+++|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|+.+++|+++|| +||+|+|...
T Consensus       434 g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~  498 (573)
T 2iht_A          434 GCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIEL  498 (573)
T ss_dssp             SSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred             CCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHH
Confidence            45889999999999999863    6789999999999987  689999999999976655 5556998775

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=98.64  E-value=6.4e-09  Score=99.08  Aligned_cols=64  Identities=20%  Similarity=0.260  Sum_probs=53.3

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEec-CCcccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTP  210 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~n-N~~ais~~  210 (233)
                      ..+.+|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|..+++|+++||.| |+|+|...
T Consensus       406 ~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~  470 (552)
T 1ovm_A          406 LWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERA  470 (552)
T ss_dssp             TTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred             hhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEe
Confidence            46889999999999999854    6789999999999876  77899999999997666655 46998743

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=98.64  E-value=9.3e-09  Score=98.99  Aligned_cols=63  Identities=27%  Similarity=0.270  Sum_probs=53.7

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIST  209 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~  209 (233)
                      ..|++|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|+.+++|+++|| +||+|++..
T Consensus       424 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~  487 (590)
T 1ybh_A          424 GLGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVM  487 (590)
T ss_dssp             SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHH
T ss_pred             CcccccchHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHH
Confidence            45899999999999999863    6789999999999987  679999999999976655 566798865

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=98.63  E-value=1.1e-08  Score=98.03  Aligned_cols=65  Identities=22%  Similarity=0.357  Sum_probs=54.3

Q ss_pred             cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778          140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP  210 (233)
Q Consensus       140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~  210 (233)
                      ...+.+|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|..+++|+++|| +||+|+|...
T Consensus       422 ~~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~  487 (570)
T 2vbf_A          422 PLWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVERE  487 (570)
T ss_dssp             TTTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred             ccchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHH
Confidence            356889999999999999963    6789999999999886  667999999999976655 5558988653

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=98.62  E-value=9.8e-09  Score=98.25  Aligned_cols=66  Identities=27%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS  212 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~~~  212 (233)
                      ..+.+|.++|.|+|+|+|.    +++.|+|++|||++..+  +++|++|+.+++|+++|| +||+|+|.....
T Consensus       407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~  473 (566)
T 2vbi_A          407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIH  473 (566)
T ss_dssp             TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTS
T ss_pred             cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeec
Confidence            4688999999999999985    36789999999999886  567999999999965555 566899987643

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=98.62  E-value=8.8e-09  Score=99.20  Aligned_cols=65  Identities=18%  Similarity=0.253  Sum_probs=54.8

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI  211 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~~  211 (233)
                      ..+.+|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|..+++|+++||.|| +|++....
T Consensus       422 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~  487 (589)
T 2pgn_A          422 AEGILGCGFPMALGAQLAEP----NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTL  487 (589)
T ss_dssp             TTCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHH
T ss_pred             CcchhhhHHHHHHHHHHhCC----CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHH
Confidence            35889999999999999863    6789999999999987  699999999999976666555 69987653

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=98.60  E-value=1.5e-08  Score=97.11  Aligned_cols=66  Identities=23%  Similarity=0.277  Sum_probs=54.9

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEE-EecCCcccccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPIS  212 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfv-v~nN~~ais~~~~  212 (233)
                      ..+.+|.++|.|+|+|+|.+    ++.|+|++|||++..+  +++|++|..+++|+++| ++||+|+|.....
T Consensus       411 ~~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~  477 (568)
T 2wvg_A          411 QWGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIH  477 (568)
T ss_dssp             TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTS
T ss_pred             CcchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeec
Confidence            46789999999999999963    6789999999999885  66699999999997555 5666899987643

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=98.55  E-value=2.1e-08  Score=98.63  Aligned_cols=64  Identities=22%  Similarity=0.250  Sum_probs=52.5

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP  210 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~  210 (233)
                      ..|++|.++|.|+|+|+|.    .++.|+|++|||++..+  +++|++|+.+++|+++|| +||+|+|...
T Consensus       511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~  575 (677)
T 1t9b_A          511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQ  575 (677)
T ss_dssp             SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHH
T ss_pred             CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhh
Confidence            3578899999999999985    46889999999999885  566999999999976555 5557988653

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=98.52  E-value=2e-08  Score=96.29  Aligned_cols=63  Identities=19%  Similarity=0.215  Sum_probs=51.9

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP  210 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~  210 (233)
                      .+.+|.++|.|+|+|+|.+    ++.|+|++|||++.  .-+++|++|..+++|+++|| +||+|++...
T Consensus       421 ~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~  484 (565)
T 2nxw_A          421 YAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRT  484 (565)
T ss_dssp             TCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHH
T ss_pred             cccccccchHHHHHHHhCC----CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEee
Confidence            5789999999999999863    57899999999998  44788999999999976655 5557988643

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=98.45  E-value=6.8e-08  Score=92.19  Aligned_cols=63  Identities=22%  Similarity=0.279  Sum_probs=50.7

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIST  209 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~  209 (233)
                      ..|.+|.++|.|+|+++|.+    ++.|+|++|||++..+  +++|++|..+++|+++|| +||+|++..
T Consensus       404 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~  467 (549)
T 3eya_A          404 NHGSMANAMPQALGAQATEP----ERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVA  467 (549)
T ss_dssp             TTCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-
T ss_pred             CCchhhhHHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence            45778899999999988863    6789999999999876  688999999999975555 555788753

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=98.44  E-value=6.4e-08  Score=93.47  Aligned_cols=62  Identities=19%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP  210 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~  210 (233)
                      .+.+|.++|.|+|+|+|.     ++.|+|++|||++..+  +++|++|+.+++|+++|| +||+|+|...
T Consensus       454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~  516 (604)
T 2x7j_A          454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSF  516 (604)
T ss_dssp             TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGG
T ss_pred             cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCccccc
Confidence            356789999999999983     5789999999999987  456999999999976665 5668998543

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=98.42  E-value=7.1e-08  Score=92.34  Aligned_cols=58  Identities=21%  Similarity=0.157  Sum_probs=50.1

Q ss_pred             cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778          140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG  204 (233)
Q Consensus       140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~  204 (233)
                      +..|++|.++|.|+|+|+|     .++.|+|++|||++...  ++.|++|..+++|+++||.||+
T Consensus       423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~  480 (568)
T 2c31_A          423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNG  480 (568)
T ss_dssp             TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESS
T ss_pred             CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCc
Confidence            3567899999999999998     45789999999999875  6779999999999988887776

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=98.37  E-value=1.1e-07  Score=90.83  Aligned_cols=61  Identities=18%  Similarity=0.152  Sum_probs=51.0

Q ss_pred             cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-c-cc
Q 026778          140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AI  207 (233)
Q Consensus       140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~-ai  207 (233)
                      +..|++|.++|.|+|+|+|     .++.|+|++|||++...  ++.|++|..+++|+++||.||+ | ++
T Consensus       418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~  480 (564)
T 2q28_A          418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRG  480 (564)
T ss_dssp             TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCS
T ss_pred             CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHH
Confidence            3568899999999999998     46789999999999875  4779999999999888777775 4 55

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=98.24  E-value=2.6e-07  Score=88.31  Aligned_cols=61  Identities=25%  Similarity=0.213  Sum_probs=45.3

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST  209 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~  209 (233)
                      ..|+.|. +|.|+|+++|.     ++.|+|++|||++...  .+.|++|..+++|+++||.||+ |+|..
T Consensus       415 ~~g~~G~-l~~A~Gaa~a~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~  476 (556)
T 3hww_A          415 ASGIDGL-LSTAAGVQRAS-----GKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFS  476 (556)
T ss_dssp             SCCSSSH-HHHHHHHHHHH-----CCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC-----
T ss_pred             ccccccH-HHHHHHHHhcC-----CCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCccc
Confidence            3455565 99999999982     5789999999998765  4559999999999988887775 67653

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=98.08  E-value=7.8e-07  Score=85.43  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=40.7

Q ss_pred             CCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778          145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST  209 (233)
Q Consensus       145 lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~  209 (233)
                      +|.++|.|+|+|++      ++.|+|++|||++...  .++|++|..+++|+++||.|| +|++..
T Consensus       438 ~~g~l~~AiGaa~~------~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~  495 (578)
T 3lq1_A          438 IDGVVSSALGASVV------FQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFS  495 (578)
T ss_dssp             SSSHHHHHHHHTTT------SSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC------
T ss_pred             cccHHHHHHHHhcC------CCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCcccc
Confidence            34468888888642      6789999999999865  567999999999987777666 688765

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=94.01  E-value=0.025  Score=59.19  Aligned_cols=42  Identities=14%  Similarity=0.212  Sum_probs=33.6

Q ss_pred             CCeEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778          165 DACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS  208 (233)
Q Consensus       165 ~~vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais  208 (233)
                      ++.|||+.||| +...|  ...|..|..+++|+++||-||+ |+.-
T Consensus       953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~t  996 (1231)
T 2c42_A          953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNT  996 (1231)
T ss_dssp             CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTT
T ss_pred             CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHhH
Confidence            37899999999 77888  4468999999999888777775 5544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d2bfda1	395	c.36.1.11 (A:6-400) Branched-chain alpha-keto acid	6e-48
d1w85a_	365	c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd	3e-42
d1qs0a_	407	c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B	2e-40
d2ozla1	361	c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de	9e-38
d1umda_	362	c.36.1.11 (A:) Branched-chain alpha-keto acid dehy	3e-36

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (405), Expect = 6e-48
 Identities = 109/217 (50%), Positives = 143/217 (65%)

Query: 1   MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
           + FI  +    IP YRV+D  GQ    S    + +   +K+Y  M  L TMD I YE+QR
Sbjct: 15  LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 74

Query: 61  QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
           QGRISFY+T  GEE  ++ SAAA+ N D V  Q RE GVL++R + ++ F  QC+GN +D
Sbjct: 75  QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 134

Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
            GKGRQMP+HYG  + ++ T+SS +ATQ+P AVGAAYA K    +   + YFG+G  SEG
Sbjct: 135 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 194

Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           D HA  NF+A  E P+IF CRNNG+AISTP S+Q+R 
Sbjct: 195 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG 231

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  144 bits (365), Expect = 3e-42
 Identities = 72/212 (33%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 6   ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
           E   E+ P +++L+++G+   + +  ++S+    ++   MV  + +D       RQGR+ 
Sbjct: 11  EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 70

Query: 66  FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
           FY  T+G+EA  IAS  A++ +DF++P YR+   ++W G  +     Q F     +  G 
Sbjct: 71  FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 126

Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
           Q+P        N       I  Q   A G A  LKM  K A A+TY GDGGTS+GDF+  
Sbjct: 127 QIPEG-----VNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 181

Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217
           +NF+   +AP IF+ +NN +AISTP+  Q  +
Sbjct: 182 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVA 213

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

 Score =  140 bits (354), Expect = 2e-40
 Identities = 74/216 (34%), Positives = 107/216 (49%), Gaps = 1/216 (0%)

Query: 5   SESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI 64
           +++++      RVLD+ G          +   +  +    M+  +  D+    AQRQ ++
Sbjct: 44  ADTADLSYSLVRVLDEQGDA-QGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM 102

Query: 65  SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKG 124
           SFY+ + GEEAI    A A+   D   P YR+  +L+ R  S+ E   Q   N+ D  KG
Sbjct: 103 SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKG 162

Query: 125 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184
           RQ+PI Y   +  +FT+S  +ATQ   AVG A A  +      A  + GDG T+E DFH 
Sbjct: 163 RQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHT 222

Query: 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPS 220
           AL F+ V  APVI    NN WAIST  +       +
Sbjct: 223 ALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTT 258

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (334), Expect = 9e-38
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   FISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQG 62
           F ++++ E   C     ++G P        ++    +K Y  M T++ M+    +  +Q 
Sbjct: 1   FANDATFEIKKCDLHRLEEGPPVT----TVLTREDGLKYYRMMQTVRRMELKADQLYKQK 56

Query: 63  RI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121
            I  F     G+EA  +   A I   D ++  YR  G    RG S++E   +  G K   
Sbjct: 57  IIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGC 116

Query: 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181
            KG+   +H      N++  +  +  Q+P   G A A K + KD   +T +GDG  ++G 
Sbjct: 117 AKGKGGSMHM--YAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQ 174

Query: 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPC 223
              A N +A+ + P IFIC NN + + T +     S      
Sbjct: 175 IFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKR 216

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

 Score =  128 bits (323), Expect = 3e-36
 Identities = 81/204 (39%), Positives = 116/204 (56%), Gaps = 2/204 (0%)

Query: 15  YRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEE 74
            R++ ++G+   D   + +      ++Y DM+  + +D  +    R G+ SF    +G E
Sbjct: 11  IRLIGEEGEWLGDFP-LDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 69

Query: 75  AINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133
           A  +A A AI+   D+V P YR+ G+ L  G  ++E   Q    KAD  KGRQMP H GS
Sbjct: 70  AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 129

Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
              N+FTV+S IA+ +P A GAA ++K+ R    AV  FGDG TSEGD++A +NF+AV  
Sbjct: 130 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 189

Query: 194 APVIFICRNNGWAISTPISDQFRS 217
           AP +FI  NN +AIS     Q  S
Sbjct: 190 APAVFIAENNFYAISVDYRHQTHS 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	100.0
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	100.0
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	100.0
d2r8oa2	331	Transketolase (TK), PP module {Escherichia coli [T	99.74
d1gpua1	335	Transketolase (TK), PP module {Baker's yeast (Sacc	99.74
d1r9ja2	336	Transketolase (TK), PP module {Leishmania mexicana	99.72
d1itza1	338	Transketolase (TK), PP module {Maize (Zea mays) [T	99.7
d2ieaa2	415	Pyruvate dehydrogenase E1 component, PP module {Es	99.45
d1pvda3	196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	98.77
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	98.56
d1zpda3	204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	98.43
d2djia3	229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	98.42
d1ovma3	196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	98.37
d2ez9a3	228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	98.33
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	98.32
d1ybha3	208	Acetohydroxyacid synthase catalytic subunit {Thale	98.26
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	98.21
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	98.0
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	97.99

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-67  Score=485.71  Aligned_cols=232  Identities=48%  Similarity=0.823  Sum_probs=222.2

Q ss_pred             CccccCCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHH
Q 026778            1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS   80 (233)
Q Consensus         1 ~~~~~~~~~~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~   80 (233)
                      ++|.+|.....+|.|||||+||+++++...+.+|+|+|+++||.|+++|.||+++.++++||++++++++.||||++||+
T Consensus        15 ~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~~~~~GqEA~~vg~   94 (395)
T d2bfda1          15 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS   94 (395)
T ss_dssp             CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred             cccCCCccCCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHH
Confidence            46778887788999999999999998877889999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhh
Q 026778           81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK  160 (233)
Q Consensus        81 ~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k  160 (233)
                      +.+|+++||+|++||+|+++|+||+|++++|+|++|+.+|+|+||+|++|+++++.|+++.+++||+++|+|+|+|+|.|
T Consensus        95 ~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k  174 (395)
T d2bfda1          95 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK  174 (395)
T ss_dssp             HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred             HHHcCCCCeeccccchhHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       161 ~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      +++++++++|++|||++++|.||||||+|++|+||+||||+||+|+||||.+.|++.++++.+-.  ++|+++|
T Consensus       175 ~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~v  248 (395)
T d2bfda1         175 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRV  248 (395)
T ss_dssp             HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEE
T ss_pred             hcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhccccceeEE
Confidence            99999999999999999999999999999999999999999999999999999999999987765  5666544

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=2.4e-65  Score=475.58  Aligned_cols=220  Identities=35%  Similarity=0.479  Sum_probs=209.9

Q ss_pred             CCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEe
Q 026778           12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV   91 (233)
Q Consensus        12 ~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~   91 (233)
                      ++++||||+||+++++ ..+++|+|+|+++||.|+++|.||+++..+||||+++||+++.||||++||++.+|+++||+|
T Consensus        51 ~~~vrvld~~g~~~~~-~~~~l~~e~l~~~yr~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~f  129 (407)
T d1qs0a_          51 YSLVRVLDEQGDAQGP-WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF  129 (407)
T ss_dssp             TSCBCCBCTTSCBCSG-GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEE
T ss_pred             cCeEEEECCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCChHHHHHHHHHhCCCCCEEE
Confidence            5789999999999986 578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEE
Q 026778           92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY  171 (233)
Q Consensus        92 ~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~  171 (233)
                      |+||+||++|+||+|+.++|+|+||+++|+++||+||+|+++++.||++.+++||+|+|+|+|+|+|.|+++++++++|+
T Consensus       130 ~~yR~~g~~larG~~~~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~  209 (407)
T d1qs0a_         130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAW  209 (407)
T ss_dssp             CCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             ecccCHHHHHHHHhhHHHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhccCcceeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccccccccccc-CCCchhh--hcccccccc
Q 026778          172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR-SIPSLPC--LSNILTILL  232 (233)
Q Consensus       172 ~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~-~~~~~~~--~~~~~~~~~  232 (233)
                      ||||+++||+||||||+|++|+|||||||+||+|+||||.+.++. .++++.|  -.++|.++|
T Consensus       210 ~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~V  273 (407)
T d1qs0a_         210 IGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRV  273 (407)
T ss_dssp             EETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEE
T ss_pred             ccccccccchHHHHHHHHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEe
Confidence            999999999999999999999999999999999999999987765 5667766  447887765

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.9e-63  Score=455.77  Aligned_cols=221  Identities=38%  Similarity=0.548  Sum_probs=210.5

Q ss_pred             CCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCC-Ce
Q 026778           11 RIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DF   89 (233)
Q Consensus        11 ~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~-D~   89 (233)
                      .-..+|+|+++|++..+ ..+++|+|+|+++||.|+++|.||+++.++++||+++|+|++.||||++||++.+|+++ ||
T Consensus         7 ~~~~~r~l~~~g~~~~~-~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~~~~D~   85 (362)
T d1umda_           7 TEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDW   85 (362)
T ss_dssp             CSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSE
T ss_pred             CcCceEEECCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcceeeCCCCHHHHHHHHHHHcCCCCCe
Confidence            34569999999999875 46889999999999999999999999999999999999999999999999999999986 99


Q ss_pred             EecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEE
Q 026778           90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV  169 (233)
Q Consensus        90 ~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv  169 (233)
                      +||+||+|+++|+||+|+.++|+|++|+.+|+|+||+||+|+++++.|+++.+++||+++|+|+|+|+|.|+++++++++
T Consensus        86 ~~~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~~~v~v  165 (362)
T d1umda_          86 VFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAV  165 (362)
T ss_dssp             EECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEE
T ss_pred             EEeccccHHHHHHHHhhHHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhcccccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778          170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL  232 (233)
Q Consensus       170 ~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~  232 (233)
                      ||+|||+++||.||||||+|+.|+||+||||+||+|+||||++.+++.+++.++-+  ++|.+.|
T Consensus       166 ~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~v  230 (362)
T d1umda_         166 CTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLV  230 (362)
T ss_dssp             EEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEE
T ss_pred             eeccCCcccCCchHHHHHHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEe
Confidence            99999999999999999999999999999999999999999999999999887765  5666654

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.4e-60  Score=438.34  Aligned_cols=214  Identities=32%  Similarity=0.523  Sum_probs=200.6

Q ss_pred             CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCe
Q 026778           10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDF   89 (233)
Q Consensus        10 ~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~   89 (233)
                      +.+|+|||||+||+++++...|++|+|+|+++||.|+++|.||+++.++++||+++|+|++.||||++||++.+|+++||
T Consensus        15 ~~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa~~vg~~~~l~~~D~   94 (365)
T d1w85a_          15 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF   94 (365)
T ss_dssp             HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred             ccCCeEEEECCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCChHHHHHHHHHhCCCcCE
Confidence            57899999999999998877789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEE
Q 026778           90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV  169 (233)
Q Consensus        90 ~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv  169 (233)
                      ++|+||+|+++|+||+|+.+++++++|+.++.+.|         ++.++++.++++|+++|+|+|+|+|.|+++++++++
T Consensus        95 i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~---------~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~~~v~v  165 (365)
T d1w85a_          95 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIP---------EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI  165 (365)
T ss_dssp             EECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCC---------TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred             eeecccchheeeecCCCHHHHHHhhCCCCCccCCC---------CCceeeccccccCccccchhhHHhhhhhcccCCcee
Confidence            99999999999999999999999999987655443         345678899999999999999999999999999999


Q ss_pred             EEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhcc--cccccc
Q 026778          170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSN--ILTILL  232 (233)
Q Consensus       170 ~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~--~~~~~~  232 (233)
                      |++|||++++|.||||||+|++|+||+||||+||+|+||||.+.++..+++++|-.+  +|++.|
T Consensus       166 ~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~v  230 (365)
T d1w85a_         166 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQV  230 (365)
T ss_dssp             EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEE
T ss_pred             eeccCCcccchhHHHHHHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCceEEE
Confidence            999999999999999999999999999999999999999999999999999888764  666654

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-59  Score=427.55  Aligned_cols=201  Identities=26%  Similarity=0.418  Sum_probs=194.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHH
Q 026778           30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ  108 (233)
Q Consensus        30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~  108 (233)
                      .+.+|+|+|+++||.|+++|.||+++.++++||++ ||+|++.||||++||++.+|+++||++|+||+|+++|++|+|+.
T Consensus        24 ~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~  103 (361)
T d2ozla1          24 TTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVR  103 (361)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhCCccCEecccccchheeeeecccch
Confidence            45799999999999999999999999999999999 79999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHH
Q 026778          109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF  188 (233)
Q Consensus       109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~  188 (233)
                      ++|+|++|+++|+++||++++|..+  .|+++.++++|+++|+|+|+|+|.|++++++|++|++|||+++||.||||||+
T Consensus       104 ~~~ae~~gk~~g~~~G~~~~~h~~~--~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn~  181 (361)
T d2ozla1         104 EILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNM  181 (361)
T ss_dssp             HHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHH
T ss_pred             hhhhhccCCcccccccccccccccc--ccccCccccccccchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhhh
Confidence            9999999999999999999999865  48899999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778          189 SAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL  232 (233)
Q Consensus       189 A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~  232 (233)
                      |+.|+||+|||||||+|+||||.+.+++...+..+-.++|++.|
T Consensus       182 A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~~v  225 (361)
T d2ozla1         182 AALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRV  225 (361)
T ss_dssp             HHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEE
T ss_pred             hhhccCceEEEEEeCCcccCCCchhccccccccccccccceEEe
Confidence            99999999999999999999999999999999998888988765

>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.4e-18  Score=154.57  Aligned_cols=169  Identities=18%  Similarity=0.239  Sum_probs=123.1

Q ss_pred             HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchhhh------hcC--CCHHH
Q 026778           47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGVLL------WRG--FSMQE  109 (233)
Q Consensus        47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~~l------~rG--~~~~~  109 (233)
                      .+|.+-..+......|.+|...++.  |.+.+.....|+         +.|.++.+ -+|+..+      ..|  ++.++
T Consensus         9 ~iR~~~~d~v~~a~sGH~G~~ls~~--~i~~~Ly~~~l~~~~~~p~~~~rDrfilS-kGH~~~~~Ya~l~~~G~~~~~e~   85 (331)
T d2r8oa2           9 AIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLKHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPMEE   85 (331)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCCHHH
T ss_pred             HHHHHHHHHHHHcCCCCchhHHHHH--HHHHHHHHHHhccCcCCCCCCCCCeEEEe-ccchHHHHHHHHHHhCCCCCHHH
Confidence            3455444444444568777666655  555555554554         24777766 4676422      356  45555


Q ss_pred             HHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCccc
Q 026778          110 FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTS  178 (233)
Q Consensus       110 ~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~~~  178 (233)
                      +.  -|.+.     |...+.|... ...|+..++|++|++++.|+|+|+|.|+.+          .++.|+|++|||+++
T Consensus        86 l~--~f~~~-----gs~~~ghp~~~~~~gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~  158 (331)
T d2r8oa2          86 LK--NFRQL-----HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMM  158 (331)
T ss_dssp             HT--TTTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH
T ss_pred             HH--hcCCC-----CCCCCCCCCcCcCCCcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEeccccccc
Confidence            32  24443     2234556543 457899999999999999999999999854          367899999999999


Q ss_pred             hhhHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCCCchhhhcc
Q 026778          179 EGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       179 ~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      ||.+|||+++|+.++| ++|+|++||++++..+++... .+++.+|+.+
T Consensus       159 EG~~wEA~~~A~~~kL~nLi~i~D~N~~~~~g~~~~~~-~~~~~~rf~a  206 (331)
T d2r8oa2         159 EGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEA  206 (331)
T ss_dssp             SHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHH
T ss_pred             ccchhHhhhhcchhcccceeeHHhhhhhcccccccccc-chhHHHHHHH
Confidence            9999999999999999 589999999999999998765 7888888865

>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=5.4e-18  Score=152.46  Aligned_cols=167  Identities=19%  Similarity=0.209  Sum_probs=120.9

Q ss_pred             HhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh------hhhcCC--CHHHH
Q 026778           48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRGF--SMQEF  110 (233)
Q Consensus        48 ~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~------~l~rG~--~~~~~  110 (233)
                      +|.+-..+...-..|.+|...++.  |.+.+-. ..|+  |       .|.++.+ -+|+.      +...|.  +.+++
T Consensus        13 iR~~~~~~v~~a~sGH~G~~ls~~--~i~~~Ly-~~~~~~p~~p~~~~rDrfilS-kGH~~~~lYa~l~~~G~~~~~e~L   88 (335)
T d1gpua1          13 IRILAVDTVSKANSGHPGAPLGMA--PAAHVLW-SQMRMNPTNPDWINRDRFVLS-NGHAVALLYSMLHLTGYDLSIEDL   88 (335)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHH-HTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHTTCSCCHHHH
T ss_pred             HHHHHHHHHHHhCCCCchhhHHHH--HHHHHHH-HHhccCcCCCCCCCCCeEEEe-CcchhHHHHHHHHHhCCCCCHHHH
Confidence            555555555555667776555544  4444333 3354  2       2666666 46663      224674  56554


Q ss_pred             HHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhh----------cCCCCeEEEEEcCCccchh
Q 026778          111 ANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKM----------DRKDACAVTYFGDGGTSEG  180 (233)
Q Consensus       111 l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~----------~~~~~vvv~~~GDG~~~~G  180 (233)
                      ..  |.+.     |...+.|....-.|+..++|++|++++.|+|+|+|.|+          +..++.|+|++|||+++||
T Consensus        89 ~~--fr~~-----gs~~~ghp~~~~pgie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG  161 (335)
T d1gpua1          89 KQ--FRQL-----GSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEG  161 (335)
T ss_dssp             TT--TTCT-----TCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSH
T ss_pred             Hh--cccC-----CCCCCCCCCCCCCCeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchh
Confidence            32  4433     33345566544468999999999999999999999986          3357889999999999999


Q ss_pred             hHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCCCchhhhcc
Q 026778          181 DFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       181 ~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      ..|||+.+|++++| ++|+|+++|+.++..+++... .+++.+|+.+
T Consensus       162 ~~~EA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~~~-~~~~~~~f~a  207 (335)
T d1gpua1         162 ISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEA  207 (335)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHH
T ss_pred             hhhhhHhHhhhhccCCEEEEEecccccccccccccc-cCCHHHHHHh
Confidence            99999999999999 699999999999999887655 5889988875

>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=99.72  E-value=2.9e-17  Score=147.68  Aligned_cols=170  Identities=18%  Similarity=0.178  Sum_probs=122.6

Q ss_pred             HHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-----C----CCeEecCCccchhh------hhcCC--CHH
Q 026778           46 VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-----N----DDFVVPQYREPGVL------LWRGF--SMQ  108 (233)
Q Consensus        46 ~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-----~----~D~~~~~yR~~~~~------l~rG~--~~~  108 (233)
                      -.+|.+-..+......|.+|...++.  |.+.+.....|+     |    .|.++.+ -+|+..      ...|.  +.+
T Consensus         9 ~~iR~~~~~~v~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~~~~p~~~~rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~   85 (336)
T d1r9ja2           9 NCIRCLAADIVQGGKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMS-NGHGCALQYALLHMAGYNLTMD   85 (336)
T ss_dssp             HHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCCHH
T ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHH--HHHHHHHHHHhccCCCCCCCCCCCeEEEe-CCccchHHHHHHHHcCCCCcHH
Confidence            44565555555555678888777776  666665555565     2    2667666 467632      23564  444


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhc----------CCCCeEEEEEcCCcc
Q 026778          109 EFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMD----------RKDACAVTYFGDGGT  177 (233)
Q Consensus       109 ~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~----------~~~~vvv~~~GDG~~  177 (233)
                      ++.  .|.+.     |...+.|... ...++..++|++|++++.|+|+|+|.|+.          .-+..|+|++|||++
T Consensus        86 ~l~--~~~~~-----~s~~~ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel  158 (336)
T d1r9ja2          86 DLK--GFRQD-----GSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCL  158 (336)
T ss_dssp             HHH--TTTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH
T ss_pred             HHh--hhccC-----CCcCcccccccCCCcccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhh
Confidence            332  23332     3334556532 34688889999999999999999998862          336789999999999


Q ss_pred             chhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778          178 SEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       178 ~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      +||..|||+++|+.++|+ +|+|++||+.+|..+++ ....+++.+|+.+
T Consensus       159 ~EG~~~EA~~~A~~~~L~nLi~i~D~N~~~idg~~~-~~~~~d~~~rf~a  207 (336)
T d1r9ja2         159 MEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTS-LSFTEQCHQKYVA  207 (336)
T ss_dssp             HSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGG-GTCCCCHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcCCEEEEEeccccccccccc-ccchhHHHHHHHH
Confidence            999999999999999995 89999999999987764 5557899999875

>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.70  E-value=5e-17  Score=146.24  Aligned_cols=179  Identities=16%  Similarity=0.159  Sum_probs=125.2

Q ss_pred             CHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-----C----CCeEecCCccchhhh---
Q 026778           34 SEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-----N----DDFVVPQYREPGVLL---  101 (233)
Q Consensus        34 s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-----~----~D~~~~~yR~~~~~l---  101 (233)
                      |.|.+.+.-..   +|.+-..+...-..|.+|...++.  |.+.+.....|+     |    .|.++.+ -+|+..+   
T Consensus         3 ~~~~~~~~~~~---iR~~~~~~v~~a~sGH~G~~ls~a--di~~~Ly~~~l~~~~~~p~~~~rDrfilS-kGH~~~~~Ya   76 (338)
T d1itza1           3 TGELLEKSVNT---IRFLAIDAVEKANSGHPGLPMGCA--PMGHVLYDEVMRYNPKNPYWFNRDRFVLS-AGHGCMLQYA   76 (338)
T ss_dssp             CHHHHHHHHHH---HHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHH
T ss_pred             cHHHHHHHHHH---HHHHHHHHHHHcCCCCchHHHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEEe-ccccchHHHH
Confidence            44545444333   466655555555668777666554  555555555564     2    2777776 4666322   


Q ss_pred             ---hcCCC-H--HHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhc----------CC
Q 026778          102 ---WRGFS-M--QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMD----------RK  164 (233)
Q Consensus       102 ---~rG~~-~--~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~----------~~  164 (233)
                         ..|.- .  .++.  -|.+.     |...+.|... ...|+..++|++|++++.|+|+|+|.|+.          ..
T Consensus        77 ~l~~~G~~~~~~~dL~--~fr~~-----~s~~~Ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~  149 (338)
T d1itza1          77 LLHLAGYDSVKEEDLK--QFRQW-----GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIV  149 (338)
T ss_dssp             HHHHHTCTTCCHHHHT--TTTST-----TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCC
T ss_pred             HHHHcCCccchHHHHH--Hhhcc-----CCcCCccccCCCCCCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccc
Confidence               34652 2  2222  24333     2233456543 35689999999999999999999998863          24


Q ss_pred             CCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCCCchhhhcc
Q 026778          165 DACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSIPSLPCLSN  226 (233)
Q Consensus       165 ~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~  226 (233)
                      +..|+|++|||+++||..|||+++|+.++| ++|+|+++|+.+++.++. ....+++..|+.+
T Consensus       150 ~~~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~~~~dg~~~-~~~~~~~~~k~~a  211 (338)
T d1itza1         150 DHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTE-IAFTEDVSTRFEA  211 (338)
T ss_dssp             CCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG-GTCCSCHHHHHHH
T ss_pred             cceEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhccccccccc-cccCCCHHHHHHh
Confidence            678999999999999999999999999999 599999999999998765 5667889998874

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Pyruvate dehydrogenase E1 component, PP module
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=2e-13  Score=125.20  Aligned_cols=159  Identities=15%  Similarity=0.159  Sum_probs=102.0

Q ss_pred             CcccccccCcchHHHHHHHHhccC------CCCeEecCCccchh------hhhcCCCHHHHHHHHhcCCCCCCCCCCCCc
Q 026778           62 GRISFYLTTSGEEAINIASAAAIK------NDDFVVPQYREPGV------LLWRGFSMQEFANQCFGNKADYGKGRQMPI  129 (233)
Q Consensus        62 G~i~~~~~~~GqEa~~vg~~~aL~------~~D~~~~~yR~~~~------~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~  129 (233)
                      |.++...++.  |...|+....++      .+|.|+..  +|+.      +...|.-..+-+.. |.+..+ ..|.....
T Consensus        50 GH~g~~ls~~--~l~~vl~~~~~~~p~~~~~d~~ilsk--GHas~~lYa~l~~~g~~~~~~l~~-~r~~~~-~~~~~~~~  123 (415)
T d2ieaa2          50 GHMASFQSSA--TIYDVCFNHFFRARNEQDGGDLVYFQ--GHISPGVYARAFLEGRLTQEQLDN-FRQEVH-GNGLSSYP  123 (415)
T ss_dssp             CCCHHHHHHH--HHHHHHHHHTCCCCCSSSCCCEEECC--GGGHHHHHHHHHHTTSSCHHHHTT-BTCCTT-SSCBCSSC
T ss_pred             CchhhHHHHH--HHHHHHHHhhcCCCCcCCCCCEEEec--CcchHHHHHHHHHcCCCchhhHHH-Hhhhcc-CCCCCCCC
Confidence            5555555554  555677777776      23555554  5652      23467544443432 322211 12222233


Q ss_pred             ccCCCccccccccccCCCCchhhhHHHHHhhh-------cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEe
Q 026778          130 HYGSNKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICR  201 (233)
Q Consensus       130 H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~  201 (233)
                      |......+....++.+|++.+.++|.|.+.+.       ++.+..++|++|||+++||..|||+++|+.++| ++|+|++
T Consensus       124 ~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d  203 (415)
T d2ieaa2         124 HPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVIN  203 (415)
T ss_dssp             CTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEE
T ss_pred             CCCCCCCCCcCCCchhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEe
Confidence            33333334445566666666666666555432       456788999999999999999999999999999 7999999


Q ss_pred             cCCccccccccccc-cCCCchhhhcc
Q 026778          202 NNGWAISTPISDQF-RSIPSLPCLSN  226 (233)
Q Consensus       202 nN~~ais~~~~~q~-~~~~~~~~~~~  226 (233)
                      +|+++|+.++.... ..+++.+++++
T Consensus       204 ~N~~~~~~~~~~~~~~~~~~~~~~~~  229 (415)
T d2ieaa2         204 CNLQRLDGPVTGNGKIINELEGIFEG  229 (415)
T ss_dssp             ECSBCSSSBSCTTSCHHHHHHHHHHH
T ss_pred             CCceeeccChhccccchHHHHHHHHh
Confidence            99999999986543 35667777654

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=1e-09  Score=90.12  Aligned_cols=65  Identities=18%  Similarity=0.256  Sum_probs=55.1

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEE-EEEecCCccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAI  207 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvv-fvv~nN~~ai  207 (233)
                      ..+.+|.++|.|+|+|+|.|....++.|+|++|||++...  ...|.+|..+++|++ ||++||+|++
T Consensus        51 ~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~i~~iV~nN~~y~~  116 (196)
T d1pvda3          51 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTI  116 (196)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHH
T ss_pred             CcCcccccccchhHHHHHHHhcCCCCceeeccCccccccc--cccccccccccccceEEEEeCCccce
Confidence            4578999999999999999999999999999999998665  356999999999965 4556667875

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=1.4e-08  Score=82.34  Aligned_cols=61  Identities=26%  Similarity=0.398  Sum_probs=45.9

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEE-EEecCCccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAI  207 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvf-vv~nN~~ai  207 (233)
                      ..+.+|.++|.|+|+++|.    +++.|+|++|||+....  ...+.+|..+++|+++ |++||.|++
T Consensus        58 ~~g~mG~~~p~AiGa~la~----p~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~~iV~nN~~~g~  119 (183)
T d1q6za3          58 AAGGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGA  119 (183)
T ss_dssp             TTCCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHH
T ss_pred             cCCCcccchhHHHhhhhhc----cccceEEeccccccccc--cHHHHHHHHhCCCEEEEEEeccccch
Confidence            4456777777777776664    57789999999998876  3448899999999765 556666865

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=98.43  E-value=5.4e-08  Score=80.24  Aligned_cols=62  Identities=23%  Similarity=0.288  Sum_probs=47.1

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      ..+.+|.++|.|+|+++|    ..++.|+|++|||+....  ...|.+|..+++|+++|| +|++|++-
T Consensus        49 ~~g~mG~~l~aAiGa~la----~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~iiV~NN~~~g~~  111 (204)
T d1zpda3          49 QWGHIGWSVPAAFGYAVG----APERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIE  111 (204)
T ss_dssp             TTCCTTTHHHHHHHHHHH----CTTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHH
T ss_pred             CCcccchhhHHHHHHHHh----CCCCceeccccccceeee--ecccchhhhcccccceEEEeccccccc
Confidence            445677777777777666    457899999999999865  467999999999976655 55578764

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=98.42  E-value=7.3e-08  Score=80.97  Aligned_cols=61  Identities=23%  Similarity=0.298  Sum_probs=46.6

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAI  207 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ai  207 (233)
                      ..+++|.++|.|+|+++|.    .++.|+|++|||+...+  ...|.+|..+++|+++||.|| .|++
T Consensus        50 ~~g~mG~~lp~aiGa~~a~----p~~~vv~i~GDGsf~m~--~~eL~ta~~~~lpi~iiV~nN~~~~~  111 (229)
T d2djia3          50 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAF  111 (229)
T ss_dssp             SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCTH
T ss_pred             Ccccccccchhhhhhhhhc----ccccccccccccccccc--cchhhhhhcccCCceEEEeCCchhhh
Confidence            3566777777777777774    56789999999998665  455999999999976666555 5764

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=98.37  E-value=9.4e-08  Score=78.19  Aligned_cols=62  Identities=21%  Similarity=0.281  Sum_probs=48.6

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      ..+.+|.++|.|+|+++|.    +++.|+|++|||+...+  ...|.+|..+++|+++|| +||+|++.
T Consensus        51 ~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~i~iiV~nN~~~~~~  113 (196)
T d1ovma3          51 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVE  113 (196)
T ss_dssp             TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred             CCccccccchhhHHHHHhh----hccceecccccccceee--cccccccccccccceEEEEecCccccc
Confidence            4567888888888888775    46789999999999876  578999999999975555 55578764

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=98.33  E-value=1.4e-07  Score=79.32  Aligned_cols=62  Identities=23%  Similarity=0.297  Sum_probs=47.1

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais  208 (233)
                      ..+++|.++|.|+|+++|.    .++.|+|++|||+....  -.-|.+|..+++|+++||-|| .|++-
T Consensus        53 ~~g~mG~glpaAiGa~la~----p~~~Vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~yg~i  115 (228)
T d2ez9a3          53 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGWI  115 (228)
T ss_dssp             SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHH
T ss_pred             ccccccccchhhhhhhhhh----ccceeEeecCCcccccc--chhhhhhccccCceEEEEeccccchhh
Confidence            4466888888888887774    46779999999998766  344889999999986666555 57543

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.32  E-value=1e-07  Score=77.78  Aligned_cols=63  Identities=25%  Similarity=0.376  Sum_probs=47.9

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEE-EecCCccccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAIST  209 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfv-v~nN~~ais~  209 (233)
                      ..|.+|.++|.|+|+++|.    +++.|+|++|||+.....  ..|.++..+++|+++| ++||.|++..
T Consensus        52 ~~g~mG~~l~~aiGa~la~----p~~~vi~i~GDG~f~~~~--~el~t~~~~~l~~~iiv~nN~~~~~~~  115 (192)
T d1ozha3          52 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQSS--MELETAVRLKANVLHLIWVDNGYNMVA  115 (192)
T ss_dssp             TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHHT--THHHHHHHHTCCEEEEEEECSBCHHHH
T ss_pred             ccccccccccchhHHHhhc----ccccceeecccccccchh--hhHHHHhhhcCceeEEEEcCCCccccc
Confidence            4466777777777777775    467899999999998763  4488899999997554 5666787663

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=98.26  E-value=3.8e-07  Score=75.18  Aligned_cols=61  Identities=28%  Similarity=0.314  Sum_probs=44.9

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      .+.+|.++|.|+|+++|    ..++.|+|++|||++....  .-|.+|..+++|+++|| +|++|++-
T Consensus        51 ~g~mG~glpaaiGa~~A----~p~~~Vi~i~GDGsf~m~~--~El~Ta~r~~lpi~iiV~NN~~~g~i  112 (208)
T d1ybha3          51 LGAMGFGLPAAIGASVA----NPDAIVVDIDGDGSFIMNV--QELATIRVENLPVKVLLLNNQHLGMV  112 (208)
T ss_dssp             SCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHTT--THHHHHHHTTCCEEEEEEECSBCHHH
T ss_pred             cccchhhhhhHHHHHhc----CCCCcEEEEccCCchhhhh--hhHHHHHHhCCCEEEEEEeccccccc
Confidence            45566666666666665    5677899999999998874  33889999999986666 55567653

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.21  E-value=3.5e-07  Score=74.97  Aligned_cols=60  Identities=27%  Similarity=0.365  Sum_probs=44.7

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAI  207 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ai  207 (233)
                      .+.+|.++|.|+|+++|.    .++.|||++|||+....  ...|.+|+.+++|+++||-|| .|++
T Consensus        61 ~g~mG~~lp~aiGa~~a~----p~~~Vv~i~GDGsf~~~--~~el~t~~~~~lpi~ivV~NN~~~g~  121 (198)
T d2ihta3          61 CSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGL  121 (198)
T ss_dssp             SCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHH
T ss_pred             cccchhHHHHHHHHhhhh----cccceEeeccccccccc--chhhhhhhhhhhhhhHHHhhccccce
Confidence            356777777777776664    46779999999998665  455889999999976666555 5654

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=1.6e-06  Score=72.54  Aligned_cols=62  Identities=21%  Similarity=0.235  Sum_probs=45.9

Q ss_pred             ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778          141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS  208 (233)
Q Consensus       141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais  208 (233)
                      ..+.+|.++|.|+|.++|.    .++.|+|++|||++....  .-|.+|..+++|+++|| +|++|+..
T Consensus        61 ~~g~mG~~~~aaiGa~lA~----p~r~Vv~i~GDGsf~m~~--~EL~Ta~r~~l~i~iiV~nN~~~g~~  123 (227)
T d1t9ba3          61 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMTL--TELSSAVQAGTPVKILILNNEEQGMV  123 (227)
T ss_dssp             SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHHG--GGHHHHHHHTCCCEEEEEECSSCHHH
T ss_pred             ccccchhhHHHHHHHHhcC----CCCeEEEeCCCcccccch--HHHHHHhhcCCceEEEEEecccccch
Confidence            4466777777777777764    567899999999987773  33889999999976655 55567544

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=97.99  E-value=2.5e-06  Score=68.61  Aligned_cols=56  Identities=21%  Similarity=0.174  Sum_probs=41.7

Q ss_pred             cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778          142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG  204 (233)
Q Consensus       142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~  204 (233)
                      .+.+|.++|.|+|.+    . ..++.++|++|||+.....  ..|.+|+.+++|+++||-||+
T Consensus        56 ~g~mG~~l~~aig~~----a-~~~~~vv~i~GDGsf~~~~--~el~ta~~~~l~i~iiV~NN~  111 (183)
T d2ji7a3          56 WGVMGIGMGYCVAAA----A-VTGKPVIAVEGDSAFGFSG--MELETICRYNLPVTVIIMNNG  111 (183)
T ss_dssp             TTCTTCHHHHHHHHH----H-HHCSCEEEEEEHHHHHTTG--GGHHHHHHTTCCEEEEEEECS
T ss_pred             ccccccccchhhhhh----c-CCcceEEEEEcCcchhhch--hhhhhhhhccccchhhhhhhh
Confidence            355666666555543    2 2456799999999998873  458899999999988888885