Citrus Sinensis ID: 026789

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILGN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccHHcccccccEEcccEEEEEEccccccEEEEcHHcccccccccccccccccccEEEccccccEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEccccccHHHHHHHcccEEcccEEEEcccccccccEEEcHHHHHHccccccccEEEcccEEEEEcccEEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHccccEEEcccccc
Coil and Loop (DISEMBL)
MFNRFFLAAIAIAALVQSSTAQTRHVVgdalgwivppngpatysnwaanqtftvgDTLVFNfaagnhdvtrvtqssfnacnttsplsrttnspasvtltasgphyficsfpghclggqklainvsargsspapqpsspapqpsgstpspvpapartptpapapapepattptpapasaptptprsaptpaptrqpathvvggalgwtvppnasvgyqnwarnnnfsvgdilgn
Flexible Loop (DISEMBL)
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNttsplsrttnsPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGyqnwarnnnfsvgdilgn
Low Complexity Region (SEG)
MFNRfflaaiaiaalVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVsargsspapqpsspapqpsgstpspvpapartptpapapapepattptpapasaptptprsaptpaptrqpatHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILGN
Disordered region (IsUnstruct)
**NRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNAC***************VTLTASGPHYFICSFPGHCLGGQKLAINV*************************************************************************HVVGGALGWTVPPNASVGYQNWARNNNFSVG*****
Disordered Region (DISOPRED)
**NRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN*****************************************************************************GGALGWTVPPNASVGYQNWARNNNFSVGDILG*
Disordered Region (DISEMBL)
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNAC************PASVTLTASGPHYFICSFPGHCLGGQKLAINVS**********************************************************************ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILGN
Disordered Region (DISPRO)
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR*****************************************************************RQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILGN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q07488	196	Blue copper protein OS=Ar	no	no	0.527	0.627	0.435	6e-23
Q9SK27	182	Early nodulin-like protei	no	no	0.618	0.791	0.371	1e-20
Q41001	189	Blue copper protein OS=Pi	N/A	no	0.480	0.592	0.420	2e-20
P42849	115	Umecyanin OS=Armoracia ru	N/A	no	0.416	0.843	0.459	3e-20
P00302	107	Stellacyanin OS=Toxicoden	N/A	no	0.450	0.981	0.415	5e-20
P29602	137	Cucumber peeling cupredox	N/A	no	0.433	0.737	0.490	4e-19
P80728	108	Mavicyanin OS=Cucurbita p	N/A	no	0.433	0.935	0.417	7e-18
Q9T076	349	Early nodulin-like protei	no	no	0.570	0.381	0.343	7e-17
O80517	202	Uclacyanin-2 OS=Arabidops	no	no	0.356	0.410	0.406	2e-13
Q8LC95	186	Early nodulin-like protei	no	no	0.502	0.629	0.341	2e-12

>sp|Q07488|BCB1_ARATH Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 71/124 (57%), Gaps = 1/124 (0%)

Query: 25  HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
           + VGD   W  P + P  Y+ WA  +TF VGD L F+FAAG HDV  V++++F  C    
Sbjct: 25  YDVGDDTEWTRPMD-PEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEK 83

Query: 85  PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSG 144
           P+S  T  P  + L  +GP YFIC+   HC  GQKL+I V A G++    P + A    G
Sbjct: 84  PISHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQKLSITVVAAGATGGATPGAGATPAPG 143

Query: 145 STPS 148
           STPS
Sbjct: 144 STPS 147

Probably acts as an electron carrier.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 77/148 (52%), Gaps = 4/148 (2%)

Query: 7   LAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN 66
           +A  ++  L   + A    V G +  W +PP+   +++ WA    F VGD +VF + +G 
Sbjct: 14  VAIFSLIFLFSLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGK 73

Query: 67  HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
             V  VT+ ++N+CNTT+PL+  T+    V L  SGP YFI    GHC  GQKL++ V  
Sbjct: 74  DSVLEVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVV-- 131

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPA 154
              SP     SPAP P      P  APA
Sbjct: 132 --ISPRHSVISPAPSPVEFEDGPALAPA 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 6   FLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG 65
           FL AI   AL   +T  T   VGD  GW++  +    YS WA+++TF VGD+LVFN+ AG
Sbjct: 11  FLLAIINMALPSLATVYT---VGDTSGWVIGGD----YSTWASDKTFAVGDSLVFNYGAG 63

Query: 66  NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
            H V  V +S + +C + + +S  +    ++ L  +G HYFIC  PGH  GG KL+I V
Sbjct: 64  AHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKV 122

Pisum sativum (taxid: 3888)

>sp|P42849|UMEC_ARMRU Umecyanin OS=Armoracia rusticana PE=1 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 27  VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
           VG  + W  P + P  Y  WA  +TF VGD L F+FAAG HDV  VT+ +F+ C   +P+
Sbjct: 5   VGGDMEWKRPSD-PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 63

Query: 87  SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           S  T  P  + L  +GP Y+IC+   HC  GQKL+INV
Sbjct: 64  SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 101

Not yet known.

Armoracia rusticana (taxid: 3704)

>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 1/106 (0%)

Query: 23  TRHVVGDALGWIVPPNGPATYS-NWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACN 81
           T + VGD+ GW VP  G   Y   WA+N+TF +GD LVF +    H+V +VTQ ++ +CN
Sbjct: 1   TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCN 60

Query: 82  TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR 127
            T+P++        + L   G  Y+IC  P HC  GQK+ INV+ R
Sbjct: 61  DTTPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINVTVR 106

Toxicodendron vernicifluum (taxid: 4013)

>sp|P29602|CPC_CUCSA Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 66/108 (61%), Gaps = 7/108 (6%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACN 81
           T H+VGD  GW VP   P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+ACN
Sbjct: 3   TVHIVGDNTGWSVPS-SPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 61

Query: 82  ---TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
              + + + RT  SP    L   G HYF+C+   HC  GQKL+INV A
Sbjct: 62  FVNSDNDVERT--SPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVA 107

Cucumis sativus (taxid: 3659)

>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 2/103 (1%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
           T H VGD+ GW      P  Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN+
Sbjct: 2   TVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 59

Query: 83  TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125
           +SP +  T+   S+ L   G  YF+C  PGHC  GQK+ I V 
Sbjct: 60  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 102

Cucurbita pepo (taxid: 3663)

>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 5   FFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA 64
           FF   ++++ L   S A+ +  VG +  W+  P  P  Y +W+    F V DTL F++A 
Sbjct: 12  FFTILLSLSTLFTISNAR-KFNVGGSGAWVTNP--PENYESWSGKNRFLVHDTLYFSYAK 68

Query: 65  GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL-AIN 123
           G   V  V ++ ++ACNT +P+ R  +  + ++L   GP YFI     +C  GQKL  + 
Sbjct: 69  GADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVV 128

Query: 124 VSARGSSPAPQPSSPAP 140
           +SAR  S A  P + AP
Sbjct: 129 ISARIPSTAQSPHAAAP 145

Arabidopsis thaliana (taxid: 3702)

>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 43  YSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASG 102
           YS WA  +TF VGD L F + + +H V  V ++ ++ C+ +S     ++    + L   G
Sbjct: 42  YSGWATGKTFRVGDILEFKYGS-SHTVDVVDKAGYDGCDASSSTENHSDGDTKIDLKTVG 100

Query: 103 PHYFICSFPGHCL--GGQKLAINVSA 126
            +YFICS PGHC   GG KLA+NV A
Sbjct: 101 INYFICSTPGHCRTNGGMKLAVNVVA 126

Probably acts as an electron carrier involved in oxygen activation and/or lignin formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 3/120 (2%)

Query: 5   FFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA 64
           FFL    +  LV S   +   V G    W +P +   + + WA +  F VGDTLV+ +  
Sbjct: 10  FFLIFFLLTNLVCS---KEIIVGGKTSSWKIPSSPSESLNKWAESLRFRVGDTLVWKYDE 66

Query: 65  GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
               V +VT+ ++  CNTT+P +  +N    V L  SGP++FI     +C+ G+KL I V
Sbjct: 67  EKDSVLQVTKDAYINCNTTNPAANYSNGDTKVKLERSGPYFFISGSKSNCVEGEKLHIVV 126

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
356548479	336	PREDICTED: uncharacterized protein LOC10	0.914	0.633	0.476	1e-46
357478161	370	Blue copper protein [Medicago truncatula	0.939	0.591	0.484	6e-43
350535054	332	dicyanin precursor [Solanum lycopersicum	0.841	0.590	0.426	4e-41
388504792	229	unknown [Medicago truncatula]	0.751	0.764	0.525	2e-40
255572517	312	Early nodulin 16 precursor, putative [Ri	0.755	0.564	0.4	4e-38
255572515	242	Cucumber peeling cupredoxin, putative [R	0.686	0.661	0.540	8e-38
224090371	415	predicted protein [Populus trichocarpa]	0.596	0.334	0.554	1e-37
297743460	624	unnamed protein product [Vitis vinifera]	0.695	0.259	0.488	3e-34
88683126	160	putative dicyanin blue copper protein pr	0.510	0.743	0.554	5e-33
225442953	319	PREDICTED: uncharacterized protein LOC10	0.673	0.492	0.5	6e-33

>gi|356548479|ref|XP_003542629.1| PREDICTED: uncharacterized protein LOC100805802 [Glycine max]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/231 (47%), Positives = 138/231 (59%), Gaps = 18/231 (7%)

Query: 1   MFNRFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVF 60
           M     L   A+A L+  S AQTRH+VGDA GWI+P  G ATY+ WA+N+TFTV DTLVF
Sbjct: 1   MARNLLLVLFAVATLLHGSAAQTRHMVGDATGWIIPAGGAATYTAWASNKTFTVNDTLVF 60

Query: 61  NFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL 120
           NFA G H+V +VT+S+F+ACN  S +   T+ PA+VTL  +G  Y+ICS   HC  GQKL
Sbjct: 61  NFATGQHNVAKVTKSAFDACNGGSAVFTLTSGPATVTLNETGEQYYICSVGSHCSAGQKL 120

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           AINV+ R SS  P   SPAPQP GS   P        +P P  AP+ ++   P  ++   
Sbjct: 121 AINVN-RASSTGP---SPAPQPRGSGSPP------RASPVPTQAPQASSPTPPPRSAPAP 170

Query: 181 PTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
                     P+ +PAT +VG   GW VP NAS  Y  WA   NF VGD+L
Sbjct: 171 AF-------GPSSEPATFIVGETAGWIVPGNASF-YTAWASGKNFRVGDVL 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478161|ref|XP_003609366.1| Blue copper protein [Medicago truncatula] gi|355510421|gb|AES91563.1| Blue copper protein [Medicago truncatula]

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/231 (48%), Positives = 140/231 (60%), Gaps = 12/231 (5%)

Query: 2   FNRFFLAAIAIAA-LVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVF 60
           FN      +A+AA L   S AQTRHVVGD  GW +P NG + Y+NWA+N+TFTVGDTLVF
Sbjct: 5   FNVLVFVLLAVAANLFHGSFAQTRHVVGDTTGWTIPTNGASFYTNWASNKTFTVGDTLVF 64

Query: 61  NFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL 120
           N+A+G HDV +VT++++++CN  + L   TNSPA+VTL  +G   FIC+ PGHC  GQKL
Sbjct: 65  NYASGQHDVAKVTKTAYDSCNGANTLFTLTNSPATVTLNETGQQNFICAVPGHCSAGQKL 124

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           +INV    +SP       AP PS S       P  TP P P PA  PA T    PA AP+
Sbjct: 125 SINVVKASASPV-----SAPTPSAS------PPKATPAPTPVPAKSPAPTKAATPAPAPS 173

Query: 181 PTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
            T    P PAP     T+ VG  +GW +P N +  Y  WA   +F VGDIL
Sbjct: 174 TTASPTPAPAPATGRVTYTVGDTIGWIIPSNGTAAYTTWASGKSFKVGDIL 224

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535054|ref|NP_001234429.1| dicyanin precursor [Solanum lycopersicum] gi|7670832|gb|AAF66242.1|AF243180_1 dicyanin [Solanum lycopersicum]

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/225 (42%), Positives = 129/225 (57%), Gaps = 29/225 (12%)

Query: 7   LAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN 66
             +I  A L   + AQ  HVVGD LGW VP  G A+YS WAA ++F VGD LVFNF +G+
Sbjct: 11  FGSILFALLQHVAMAQQTHVVGDTLGWTVPNGGAASYSTWAAGKSFVVGDILVFNFRSGS 70

Query: 67  HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
           H V  V++ +F++CNT+SP+S +TN P ++TL+++G HY++C+FP HC  GQKLAINVS 
Sbjct: 71  HSVAEVSKGAFDSCNTSSPISISTNGPTNITLSSAGSHYYLCTFPSHCTLGQKLAINVSG 130

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             S       +        T +PV APA + + APA AP PA+                 
Sbjct: 131 SASPAPQPAPATP-----PTATPVMAPAPSVSVAPATAPSPASV---------------- 169

Query: 187 PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
                     T++VG  LGW+VP +    YQ WA N +F VGD L
Sbjct: 170 --------AQTYIVGDNLGWSVPTSGPNSYQRWANNKSFKVGDTL 206

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504792|gb|AFK40462.1| unknown [Medicago truncatula]

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 4/179 (2%)

Query: 2   FNRFFLAAIAIAA-LVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVF 60
           FN      +A+AA L   S AQTRHVVGD  GW +P NG + Y+NWA+N+TFTVGDTLVF
Sbjct: 5   FNVLVFVLLAVAANLFHGSFAQTRHVVGDTTGWTIPTNGASFYTNWASNKTFTVGDTLVF 64

Query: 61  NFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL 120
           N+A+G HDV +VT++++++CN  + L   TNSPA+VTL  +G   F+C+ PGHC  GQKL
Sbjct: 65  NYASGQHDVAKVTKTAYDSCNGANTLFTLTNSPATVTLNETGQQNFLCAVPGHCSAGQKL 124

Query: 121 AINVSARGSSPAPQPS-SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATT--PTPAPA 176
           +INV    +SP   P+ S +P  +   P+PVPA +  PT A  PAP P+TT  PTPAPA
Sbjct: 125 SINVVKASASPVSAPTPSASPPKATPAPTPVPAKSPAPTKAATPAPAPSTTASPTPAPA 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572517|ref|XP_002527193.1| Early nodulin 16 precursor, putative [Ricinus communis] gi|223533458|gb|EEF35206.1| Early nodulin 16 precursor, putative [Ricinus communis]

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 119/225 (52%), Gaps = 49/225 (21%)

Query: 7   LAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN 66
           + AIA A+L+ ++TA+T  VVGD LGW+VPP G   Y+ WAA  TFTVGD LVFNF  G 
Sbjct: 9   ILAIAFASLLNTTTAKTL-VVGDGLGWLVPPGGDLAYATWAAINTFTVGDVLVFNFTTGQ 67

Query: 67  HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
            DV RVT+ ++  CN+T+P++  T  PA+ TL  +G ++FI +   HC  GQ+LAI V+A
Sbjct: 68  QDVARVTKEAYLFCNSTNPIALKTTGPANFTLDTTGAYFFISTMDKHCPLGQRLAIYVTA 127

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
                                           P P P+P P T                A
Sbjct: 128 --------------------------------PGPYPSPGPHT----------------A 139

Query: 187 PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
           P+P P R P T+ VG  +GW VPP  ++ Y  WA N  F VGD+L
Sbjct: 140 PSPVPNRAPVTYTVGDGMGWIVPPGGALAYMTWAYNKTFIVGDVL 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572515|ref|XP_002527192.1| Cucumber peeling cupredoxin, putative [Ricinus communis] gi|223533457|gb|EEF35205.1| Cucumber peeling cupredoxin, putative [Ricinus communis]

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 6   FLAAIAIAALVQSSTAQTR-HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA 64
           FLAAI +A  VQSS AQT  HVVG A+GW +PP G   YS WAANQTF  GD LVFNFA 
Sbjct: 9   FLAAIIVAGFVQSSIAQTTTHVVGGAVGWTIPPGGATVYSTWAANQTFAAGDVLVFNFAN 68

Query: 65  GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             HDV +V+++ ++AC + +P+S    SPA +T+ ASG HYFIC+F GHC  GQKL INV
Sbjct: 69  NIHDVAKVSKADYDACASANPISLAITSPARITINASGEHYFICNFTGHCSAGQKLMINV 128

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP 165
           SA  +       S    P  ST +PVPAP+ TP  AP+  P
Sbjct: 129 SAATTPAPAPQPSSPSPPPQSTTTPVPAPSPTPVSAPSSTP 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090371|ref|XP_002308977.1| predicted protein [Populus trichocarpa] gi|222854953|gb|EEE92500.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/148 (55%), Positives = 100/148 (67%), Gaps = 9/148 (6%)

Query: 5   FFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA 64
               +IAI ALVQ+S AQT H VGD  GW +P   PA YS+WAANQTF VG+ LVFNF A
Sbjct: 150 LMFVSIAITALVQTSVAQTTHTVGDTTGWAIPTGDPAFYSSWAANQTFNVGEILVFNFMA 209

Query: 65  GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             HDV +VT++ ++AC T+SP+S    SPA + L ASG HYFIC+F GHC  GQK+ INV
Sbjct: 210 NAHDVAKVTKADYDACTTSSPISLVETSPARINLDASGEHYFICNFTGHCSAGQKMMINV 269

Query: 125 ---------SARGSSPAPQPSSPAPQPS 143
                    + + SSPAPQPS+P PQ S
Sbjct: 270 SAASSSPSPAPQTSSPAPQPSTPTPQTS 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743460|emb|CBI36327.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 109/170 (64%), Gaps = 8/170 (4%)

Query: 1   MFNRFF-----LAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVG 55
           M  RF      +  +A    V  + AQT HVVGD+LGW VPPNG A Y++WA+N+ F VG
Sbjct: 358 MMARFMCMVGVMIVVAATLTVNFAAAQTVHVVGDSLGWTVPPNGAAAYTSWASNKQFMVG 417

Query: 56  DTLVFNFAAGNHDVTRVTQSSFNACNTTSPL-SRTTNSPASVTLTASGPHYFICSFPGHC 114
           D LVFNFA   HDV  +++ SF+ACN ++P+ S  T  PA++TL A+G HY+IC+   HC
Sbjct: 418 DILVFNFATNEHDVVELSKESFDACNYSNPIGSIITTGPANITLNATGNHYYICTIGRHC 477

Query: 115 LGGQKLAINVSAR-GSSPAPQPSSPAPQPSGSTPSPVPAP-ARTPTPAPA 162
             GQKLAI VSA  GS+P     +  P  + +TPSP   P  RTPTP+P+
Sbjct: 478 TSGQKLAITVSANPGSNPPSASPASPPPTTIATPSPTATPDDRTPTPSPS 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|88683126|emb|CAJ77497.1| putative dicyanin blue copper protein precursor [Solanum tuberosum]

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 84/119 (70%)

Query: 7   LAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN 66
             AI  A L   S AQ  HVVGD L W VP  G A+YS WAA +TF VGD +VFNF  G+
Sbjct: 11  FGAILFALLQHVSMAQQTHVVGDTLNWTVPNGGAASYSTWAAGKTFAVGDIIVFNFRTGS 70

Query: 67  HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125
           H V  V++ +F++CNT+SP+S +TN P  +TLT++G HY++C+FP HC  GQKLAINVS
Sbjct: 71  HSVAEVSKGAFDSCNTSSPISISTNGPTDITLTSAGSHYYLCTFPSHCTLGQKLAINVS 129

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442953|ref|XP_002265604.1| PREDICTED: uncharacterized protein LOC100250809 [Vitis vinifera]

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 106/160 (66%), Gaps = 3/160 (1%)

Query: 6   FLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG 65
            +  +A    V  + AQT HVVGD+LGW VPPNG A Y++WA+N+ F VGD LVFNFA  
Sbjct: 10  VMIVVAATLTVNFAAAQTVHVVGDSLGWTVPPNGAAAYTSWASNKQFMVGDILVFNFATN 69

Query: 66  NHDVTRVTQSSFNACNTTSPL-SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
            HDV  +++ SF+ACN ++P+ S  T  PA++TL A+G HY+IC+   HC  GQKLAI V
Sbjct: 70  EHDVVELSKESFDACNYSNPIGSIITTGPANITLNATGNHYYICTIGRHCTSGQKLAITV 129

Query: 125 SAR-GSSPAPQPSSPAPQPSGSTPSPVPAP-ARTPTPAPA 162
           SA  GS+P     +  P  + +TPSP   P  RTPTP+P+
Sbjct: 130 SANPGSNPPSASPASPPPTTIATPSPTATPDDRTPTPSPS 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2062525	261	UCC1 "uclacyanin 1" [Arabidops	0.433	0.386	0.466	1e-20
TAIR|locus:2151069	187	AT5G26330 [Arabidopsis thalian	0.412	0.513	0.448	2.1e-20
TAIR|locus:2149249	196	BCB "blue-copper-binding prote	0.416	0.494	0.459	7.2e-20
TAIR|locus:2052866	200	AT2G31050 [Arabidopsis thalian	0.442	0.515	0.443	6.5e-19
TAIR|locus:2040164	182	ENODL14 "early nodulin-like pr	0.459	0.587	0.407	1.4e-18
TAIR|locus:2043833	206	AT2G26720 [Arabidopsis thalian	0.424	0.480	0.450	1.4e-18
TAIR|locus:2206986	181	AT1G72230 [Arabidopsis thalian	0.347	0.447	0.451	2.5e-17
TAIR|locus:2116767	177	ENODL15 "early nodulin-like pr	0.459	0.604	0.388	5.3e-17
TAIR|locus:2085775	203	ENODL9 "early nodulin-like pro	0.416	0.477	0.397	1.1e-16
TAIR|locus:4010713753	106	AT3G17675 [Arabidopsis thalian	0.420	0.924	0.382	4.7e-16

TAIR|locus:2062525 UCC1 "uclacyanin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 49/105 (46%), Positives = 58/105 (55%)

Query:    20 TAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNA 79
             T  T H +G   GW V   G A+   WAA QTF VGD LVF++ A  HDV  VT+  F++
Sbjct:    21 TVATDHTIGGPSGWTV---G-ASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDS 76

Query:    80 CNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             C    PL    N  + V LT  G  YFIC  PGHC  G KL +NV
Sbjct:    77 CQAVKPLITFANGNSLVPLTTPGKRYFICGMPGHCSQGMKLEVNV 121

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2151069 AT5G26330 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 44/98 (44%), Positives = 60/98 (61%)

Query:    27 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
             VGD+ GW    N    Y  WA+ +TF +GDT++F +    H+V RVT   + +CNT+ P+
Sbjct:    26 VGDSAGWTTIAN--VDYKLWASTKTFHIGDTVLFEYNPQFHNVMRVTHPMYRSCNTSKPI 83

Query:    87 SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             S  T    S+TLT  G H+F C  PGHCL GQKL ++V
Sbjct:    84 STFTTGNDSITLTNHGHHFFFCGVPGHCLAGQKLDLHV 121

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2149249 BCB "blue-copper-binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 45/98 (45%), Positives = 58/98 (59%)

Query:    27 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
             VGD   W  P + P  Y+ WA  +TF VGD L F+FAAG HDV  V++++F  C    P+
Sbjct:    27 VGDDTEWTRPMD-PEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPI 85

Query:    87 SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             S  T  P  + L  +GP YFIC+   HC  GQKL+I V
Sbjct:    86 SHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQKLSITV 123

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006979 "response to oxidative stress" evidence=RCA;TAS

GO:0015690 "aluminum cation transport" evidence=IMP

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009620 "response to fungus" evidence=RCA

GO:0009646 "response to absence of light" evidence=IEP;RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2052866 AT2G31050 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 47/106 (44%), Positives = 58/106 (54%)

Query:    19 STAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFN 78
             S   T H VGD+ GW +       Y  WA+  TF VGD+LVF +    HDVT VT + + 
Sbjct:    23 SVGGTVHKVGDSDGWTIMS---VNYETWASTITFQVGDSLVFKYNKDFHDVTEVTHNDYE 79

Query:    79 ACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
              C  + PL+R       V LT  G  +FIC FPGHC  GQKL I+V
Sbjct:    80 MCEPSKPLARYETGSDIVILTKPGLQHFICGFPGHCDMGQKLQIHV 125

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/108 (40%), Positives = 61/108 (56%)

Query:    18 SSTAQTRHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSS 76
             S  A     VG   G W +PP+   +++ WA    F VGD +VF + +G   V  VT+ +
Sbjct:    24 SLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEA 83

Query:    77 FNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             +N+CNTT+PL+  T+    V L  SGP YFI    GHC  GQKL++ V
Sbjct:    84 YNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVV 131

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

TAIR|locus:2043833 AT2G26720 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 46/102 (45%), Positives = 59/102 (57%)

Query:    23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
             T H VG+  GW +   G   Y  WA+++ F VGDTLVF +    HDVT VT + F  C +
Sbjct:    27 TVHKVGNTKGWTMI--G-GDYEAWASSRVFQVGDTLVFAYNKDYHDVTEVTHNDFEMCES 83

Query:    83 TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             + PL R      S++LT  G  +FIC  PGHC  GQKL I+V
Sbjct:    84 SKPLRRYKTGSDSISLTKPGLQHFICGVPGHCKKGQKLQIHV 125

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2206986 AT1G72230 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 37/82 (45%), Positives = 53/82 (64%)

Query:    43 YSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASG 102
             YS+ A  ++F VGDT+VFN+ AG H V  V++S + +C   + +S  ++   S+ L   G
Sbjct:    37 YSSLATGKSFAVGDTIVFNYGAG-HTVDEVSESDYKSCTLGNAISSDSSGTTSIALKTPG 95

Query:   103 PHYFICSFPGHCLGGQKLAINV 124
             PHYFIC  PGHC GG KL++ V
Sbjct:    96 PHYFICGIPGHCTGGMKLSVIV 117

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2116767 ENODL15 "early nodulin-like protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 42/108 (38%), Positives = 58/108 (53%)

Query:    18 SSTAQTRHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSS 76
             SS       VG   G W +PP+   +++ WA    F VGD +VF + AG   V +VT+ +
Sbjct:    20 SSVNANEVTVGGKSGDWKIPPSSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREA 79

Query:    77 FNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             +  CNTTSP +  T+    V L  +GP YF+    GHC  GQKL + V
Sbjct:    80 YEKCNTTSPKASYTDGNTKVKLDQAGPVYFVSGTEGHCQKGQKLRLVV 127

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

TAIR|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 39/98 (39%), Positives = 58/98 (59%)

Query:    27 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
             VG A GW VP +G   YS WA    F +GD+L+F + +    V +VT+ ++++CNT SP 
Sbjct:    32 VGGATGWTVP-SGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPT 90

Query:    87 SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             ++  +   SVTL  SGP+YFI     +C   +KL + V
Sbjct:    91 AKFADGKTSVTLNHSGPYYFISGNKDNCKKNEKLVVIV 128

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:4010713753 AT3G17675 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 39/102 (38%), Positives = 58/102 (56%)

Query:    23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
             T H+VGD+ GW +  N    Y+NW   + F VGD LVFN+ +  H+V +V  +++  C  
Sbjct:     7 TEHIVGDSNGWELFTN----YTNWTQGREFHVGDVLVFNYKSDQHNVMQVNSTAYTDCGL 62

Query:    83 TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
              +  +  T    S+ L+  G  +FIC    HC+ GQKL+INV
Sbjct:    63 DNYTTLFTKGNDSIILSEVGKLWFICGVDDHCVNGQKLSINV 104

GO:0005507 "copper ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
pfam02298	84	pfam02298, Cu_bind_like, Plastocyanin-like domain	1e-34
PLN03148	167	PLN03148, PLN03148, Blue copper-like protein; Prov	6e-15
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-09
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	1e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-07
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	4e-07
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	4e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-07
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	6e-07
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	9e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	5e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-06
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	8e-06
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	8e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	4e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-05
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	5e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	7e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	8e-05
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	9e-05
PRK14960	702	PRK14960, PRK14960, DNA polymerase III subunits ga	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-04
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	2e-04
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	3e-04
PHA01929	306	PHA01929, PHA01929, putative scaffolding protein	3e-04
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	4e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	4e-04
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	4e-04
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-04
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	5e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	5e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	5e-04
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	5e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	6e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-04
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	6e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	7e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	7e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-04
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	8e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	8e-04
PRK01973	271	PRK01973, PRK01973, septum formation inhibitor; Re	8e-04
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	8e-04
pfam05616	502	pfam05616, Neisseria_TspB, Neisseria meningitidis	8e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.001
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
TIGR03354	396	TIGR03354, VI_FHA, type VI secretion system FHA do	0.001
COG3889	872	COG3889, COG3889, Predicted solute binding protein	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.002
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.002
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.002
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.002
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.002
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
pfam05616	502	pfam05616, Neisseria_TspB, Neisseria meningitidis	0.002
PRK09537	417	PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewe	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	0.002
pfam12200	124	pfam12200, DUF3597, Domain of unknown function (DU	0.002
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.002
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
pfam12238	201	pfam12238, MSA-2c, Merozoite surface antigen 2c	0.002
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.002
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.002
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.003
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.003
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.003
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.003
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	0.003
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.003
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	0.003
PRK09537	417	PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewe	0.003
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	0.003
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	0.003
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.003
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.003
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	0.003
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.004
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.004
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	0.004
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.004
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.004
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.004
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.004
pfam12238	201	pfam12238, MSA-2c, Merozoite surface antigen 2c	0.004
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	0.004
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.004
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.004
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	0.004

>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain

 Score =  118 bits (298), Expect = 1e-34
 Identities = 39/82 (47%), Positives = 51/82 (62%)

Query: 37  PNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASV 96
               A Y+ WA+ +TF VGDTLVFN+  G H+V  VT++ + +CNT+ P+   T     +
Sbjct: 3   VPLNADYTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTGNDII 62

Query: 97  TLTASGPHYFICSFPGHCLGGQ 118
            LT  G HYFIC  PGHC GGQ
Sbjct: 63  PLTKPGQHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84

>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional

 Score = 69.5 bits (170), Expect = 6e-15
 Identities = 42/162 (25%), Positives = 61/162 (37%), Gaps = 13/162 (8%)

Query: 4   RFFLAAIAIAALVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFA 63
              L          ++TA T H+VG   GW    N    Y+ WA NQTF VGD + F + 
Sbjct: 3   HLLLFCFFALFSASATTA-TDHIVGANKGW----NPGINYTLWANNQTFYVGDLISFRYQ 57

Query: 64  AGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123
              ++V  V Q+ ++ C T       T+    + L  +  +YFIC   G C  G K+ I 
Sbjct: 58  KTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTIL 116

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP 165
           V        P P  P+   + +      A             
Sbjct: 117 VH-------PLPPPPSHTAAANGAKSHSAAPAAFHKGLVALR 151

Length = 167

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 24/83 (28%), Positives = 31/83 (37%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
           G      P++ A   + +  +P  APA     APAPAP  A  P   P  A      +AP
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 188 TPAPTRQPATHVVGGALGWTVPP 210
              P    A      A+   V P
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 19/76 (25%), Positives = 25/76 (32%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
               ++ A   +S       +     PAPA     APA  P+PA     A A A  P   
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103

Query: 185 SAPTPAPTRQPATHVV 200
           +A  PA          
Sbjct: 104 AAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 20/82 (24%), Positives = 28/82 (34%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
           P  ++     + +  +   APA  P      AP PA     APA+ P P   +A   AP 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 193 RQPATHVVGGALGWTVPPNASV 214
             PA           V    + 
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 19/74 (25%), Positives = 29/74 (39%)

Query: 123 NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 182
           + +A  ++ A   ++ +   +        APA  P  A APA  P      A A+AP   
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99

Query: 183 PRSAPTPAPTRQPA 196
           P +A   AP     
Sbjct: 100 PAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           A   +PAP P       + +  +P P PA  P+  PAPAP  A  PT APA AP   P  
Sbjct: 432 APAPAPAPAPP-SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP 490

Query: 186 APTPAPTRQPAT 197
           A  PA    PA 
Sbjct: 491 AAAPAAPAAPAA 502

Length = 824

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 120 LAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPAR----TPTPAPAPAPEPATTPTPAP 175
           LA+  +      A  P +PAP       + +    R     PT A   A  P     P P
Sbjct: 340 LALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRP 399

Query: 176 ASAPTPTPRSAPTPAPTRQPATHVVGGALGW 206
              P P P  +    P   PA    G AL W
Sbjct: 400 RGPPAPEPARSAEAPPLVAPAAAPAGLALRW 430

Length = 504

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 33/83 (39%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           A   +A  ++ A   +  A   + +  +P PAP     PA  P P  A     APA+ P 
Sbjct: 42  AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101

Query: 181 PTPRSAPTPAPTRQPATHVVGGA 203
               +AP  A      T + G A
Sbjct: 102 AAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 121 AINVSARGSSPAPQPS-SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           A   +A   +PA  P  +PAP P+ + PSP         P+P PA  P+  P PAPA+AP
Sbjct: 415 AAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474

Query: 180 TPTPRSAPTPAPTRQPATH 198
            PT   AP P     PA  
Sbjct: 475 EPTAAPAPAPPAAPAPAAA 493

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 25/91 (27%), Positives = 33/91 (36%)

Query: 120 LAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           LA   +A   + AP       +P  + P+  P       PAPA AP  A +   AP +A 
Sbjct: 362 LAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA 421

Query: 180 TPTPRSAPTPAPTRQPATHVVGGALGWTVPP 210
            P P +AP  A                  PP
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 22/87 (25%), Positives = 25/87 (28%), Gaps = 3/87 (3%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
                   A  PS   P P+ ST     A A  P   P           P P + P P  
Sbjct: 365 APQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHT 424

Query: 184 RSAPTPAPTRQPATHVVGGALGWTVPP 210
              P  AP    A   V     +T P 
Sbjct: 425 ---PESAPKLTRAAIPVDEKPKYTPPA 448

Length = 585

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATT-PTPAPASAPTPTPRSAPT 188
           SPAP+  + A Q S   P   PAPA  P  APA A  PA   P P  A+A     R+AP 
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486

Query: 189 PAPTRQP 195
            AP    
Sbjct: 487 AAPAPAD 493

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           A   +A   S A    + AP P+ + P+   APA    P PAPAP PA  P     +AP 
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPA 450

Query: 181 PTPRS-APTPAPTRQPAT 197
               S  P  AP+ QPA 
Sbjct: 451 GGAPSPPPAAAPSAQPAP 468

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAP-APAPEPATTPTPAPASAPTPTPR 184
           A  S+PA  P++ AP      P    APA  P PA  A A      P  A A+A      
Sbjct: 53  AAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112

Query: 185 SAPTPAPTRQPATHVV 200
                 P R  A  V 
Sbjct: 113 VEDEVTPLRGAAAAVA 128

Length = 1228

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 18/101 (17%)

Query: 119 KLAINVSARGSSPAPQP---SSPAPQPS---GSTPSPVPAPARTPTPA------PAPAPE 166
           +L  + + +   PAP P   +S AP P+    S  S  P  A+ PTPA      PAPAP 
Sbjct: 30  ELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPH 89

Query: 167 PATTPTPAPASAP------TPTPRSAPTPAPTRQPATHVVG 201
            A +  P PA AP       P    A T A     A    G
Sbjct: 90  QAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAG 130

Length = 566

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            + + + PA  P+S        TPSP  +PA   + APA A E   +P+   A+A  P  
Sbjct: 80  GTGKVAPPAATPTSAP----TPTPSPPASPASGMSAAPASAVEE-KSPSEESATATAPES 134

Query: 184 RSAPTPAPTRQPA-THVVGGALGWTVPPNASVGYQ 217
            S   P+     A T VVG     T+     +GY+
Sbjct: 135 PSTSVPSSGSDAASTLVVGSERETTIEEIMEMGYE 169

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 117 GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSP-VPAPARTPTPAPAPAPEPATTPTPAP 175
           G K  I       + APQPS+ A   S S       A    P  A  PA  P T     P
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSA-AAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPP 432

Query: 176 ASAPTPTPRSAP-----TPAPTRQPAT 197
           A+ P   P +AP           +   
Sbjct: 433 AAVPVNPPSTAPQAVRPAQFKEEKKIP 459

Length = 614

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 23/91 (25%), Positives = 31/91 (34%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A  ++P P P+  AP          PAPA   TP    A +PA  P  A   A  P+P 
Sbjct: 675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA 734

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPPNASVG 215
           +        +P             PP  +  
Sbjct: 735 ADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
           PAPQP+ P    + S   P PAP+  P  A   A  P   P    A+ P   PR    P 
Sbjct: 364 PAPQPAKPTA-AAPSPVRPTPAPSTRPKAAA-AANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 191 PTRQPA 196
           P    +
Sbjct: 422 PHTPES 427

Length = 585

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 22/70 (31%), Positives = 26/70 (37%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A   S  P   +P   P    P+PV  P   P   P P P+P       PA  P P P 
Sbjct: 79  DAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPV 138

Query: 185 SAPTPAPTRQ 194
                APT +
Sbjct: 139 VEEKAAPTGK 148

Length = 226

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 18/71 (25%), Positives = 23/71 (32%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           A  +  A  PS      +       P PA    P P P  +P   P P       P P+ 
Sbjct: 74  AVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKP 133

Query: 186 APTPAPTRQPA 196
            P P    + A
Sbjct: 134 EPKPVVEEKAA 144

Length = 226

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPAR-TPTPAPAPAPEPATTPTPAPASAPTPT 182
           +  R        +  A  PS +  +P  APA     PA A AP PA  P PAPA AP P 
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA 440

Query: 183 PRSAPTPAPTRQPATHVVGGA 203
           P S    AP     +     A
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAA 461

Length = 824

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAP------APEPATTPTPAPASAPTP 181
            + PA  P+  AP  +  T S  PA A  P PA  P      AP  A   T A  +   P
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAP 228

Query: 182 TPRSAPTPAPTRQPAT 197
                  P PT Q   
Sbjct: 229 ATPDGAAPLPTDQAGV 244

Length = 331

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPA--PAPAPEPATTPTPAPASAPT---PTPRSA 186
           AP P+        +    +P P R P PA   AP   PA  P+PA A  P    P  RSA
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440

Query: 187 PTP-APTRQPATHVVGGALG 205
           P P +P      +V  G  G
Sbjct: 441 PLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 18/64 (28%), Positives = 22/64 (34%)

Query: 135 PSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQ 194
           P++P P+P     S  PA +   T AP  A  P   P   P  A  P    A     T  
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 195 PATH 198
               
Sbjct: 421 QLLA 424

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             ++P P+P  P PQ +    S     A T   AP  AP     P  AP  AP       
Sbjct: 360 HPAAPLPEPEVP-PQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPET 418

Query: 187 PTPA 190
            +  
Sbjct: 419 TSQL 422

Length = 647

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 16/69 (23%), Positives = 19/69 (27%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           S  G    P     AP    +  +P  A A      PA A         A A+ P P   
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAA 452

Query: 185 SAPTPAPTR 193
             P      
Sbjct: 453 PQPAVRLNS 461

Length = 598

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 4/105 (3%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPE----PATTPTPAPASAPTPTPR 184
              A   S+    P  S+P     P+    P+          P++  +  P  +P     
Sbjct: 174 GEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTN 233

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGD 229
            +P P P   P   V       T  P         A     ++ D
Sbjct: 234 PSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 115 LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 174
            GG   A   +A  ++ A + +   P+      +P P P     P P  A +P   P PA
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKA----AAPTPEPPAASKPTPPAAAKP---PEPA 172

Query: 175 PASAPTPTPRSAPTPAPTRQPAT 197
           PA+ P PTP +   P  TR P +
Sbjct: 173 PAAKPPPTPVARADPRETRVPMS 195

Length = 418

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 126 ARGSS--PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            RG+   P+    +P P    + P     P     PA   A  PA  P P  A+AP P  
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP-PAR 436

Query: 184 RSAPTPAPT 192
            + P  A +
Sbjct: 437 SADPAAAAS 445

Length = 576

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPART-----PTPAPAPAPEPATTPTPAP 175
           A  +      P     + + Q + +  + V  P        P  AP  AP      T + 
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Query: 176 ASAPTPTPRSAPTPAPTRQPATHVVGGA 203
             A     + A      ++        A
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRA 449

Length = 647

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 148 SPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS-----APTP 189
           S V     TP PAPAPA   A TP    A AP P         AP P
Sbjct: 46  SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMP 92

Length = 153

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 115 LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 174
           L    ++   +A   +      +P+P P+   PS         TP+P PA      P PA
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 175 PASAPTPTPRSAPTPAPT 192
             + P+PTP +    AP 
Sbjct: 420 EPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 124 VSARGSSPA-PQPSSPAPQP-----SGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPAS 177
             A   +PA P+ ++PA  P     +   P+  PA A +   AP  A  PA    PA A 
Sbjct: 374 APAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA- 432

Query: 178 APTPTPRSAPTPAPTRQPATHV 199
           AP   P +AP            
Sbjct: 433 APAAAPAAAPAAVALAPAPPAQ 454

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 7/91 (7%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPV-----PAPARTPTPAPAP-APEPATTPTPAPAS 177
             A+ ++ AP P  P P PS    +       P      T  P P  P P   P P    
Sbjct: 367 QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPE 426

Query: 178 APTPTPRSAPTPAPTRQPATHVVGGALGWTV 208
           +     R+A  P   +   T           
Sbjct: 427 SAPKLTRAA-IPVDEKPKYTPPAPPKEEEKA 456

Length = 585

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 17/59 (28%), Positives = 21/59 (35%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
           P    P P+    + +P  +   T  P  A AP  A    P PASAP   P        
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 24/102 (23%), Positives = 31/102 (30%), Gaps = 1/102 (0%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           + A    +PA  P+ +  +P   PA  P    A     A    PA A A      + P  
Sbjct: 395 AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Query: 190 APTRQPATHV-VGGALGWTVPPNASVGYQNWARNNNFSVGDI 230
           A     A  V V           A       AR      GD+
Sbjct: 455 AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 20/66 (30%), Positives = 25/66 (37%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
            AP  ++ A   + +     PAP        A A  P   P PAPA A  P   + P  A
Sbjct: 408 AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAA 467

Query: 191 PTRQPA 196
             R  A
Sbjct: 468 GPRPVA 473

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP-APASAPTPTPRSAPT 188
           SP+P  SS A QP  S P     PA TP       P       P     A  P       
Sbjct: 399 SPSPSQSSAAAQP--SAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEK 456

Query: 189 PAPTRQ 194
             P  +
Sbjct: 457 KIPVSK 462

Length = 614

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 12/77 (15%), Positives = 21/77 (27%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            +   ++P    + P        P+  P  A         +   A       A   T   
Sbjct: 380 SAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

Query: 184 RSAPTPAPTRQPATHVV 200
           +S P  A   +P    +
Sbjct: 440 KSEPAAASRARPVNSAL 456

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 125 SARGSSPAPQPSSPAPQPSGS-TPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
           S  G++PA    SP P  + S  P+P PA A  PT APAPAP  A  P  APA+   P  
Sbjct: 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502

Query: 184 RSAPTPAPT 192
            +    A T
Sbjct: 503 PAGADDAAT 511

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA-- 178
           A   +A  S+PA  P++  P P  +  +  PA A    PA                 A  
Sbjct: 404 AAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463

Query: 179 ----PTPTPRSAPTPAPTRQPATHVVGGALG 205
               P P   SA         A  +     G
Sbjct: 464 VRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPAR-TPTPAPAPAPEPATTPTPAPASAP 179
           A   +A   +  P   + AP  + +  +   APAR +P P    A   A+   P  A AP
Sbjct: 391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

Query: 180 TPTPRSAPTPAPTRQPATHVVGGALGWTVPPNAS 213
            P P +AP  A     A      A     P  A+
Sbjct: 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 121  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            A   +A    P  + + PA   S +    +P       P P   P P   P P P   P 
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRS-TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

Query: 181  PTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVG 215
            P P   P P P   P T   G        P   +G
Sbjct: 2931 PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
                   P    PA  P+   P+PVPA A  P   P P+ EP +   PAP     P   
Sbjct: 399 PGGDDQTRPAAPVPASVPT-PAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAP 457

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPP 210
           +          AT     AL    PP
Sbjct: 458 ATEPAPDDPDDATRKALDALRERRPP 483

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 21/77 (27%), Positives = 23/77 (29%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            S  G     +    AP      P+P    A        PAP PA TP    A  P   P
Sbjct: 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721

Query: 184 RSAPTPAPTRQPATHVV 200
             A   A    PA    
Sbjct: 722 PQAAQGASAPSPAADDP 738

Length = 824

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 136 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP 195
           S P    + + P+  PAPA      P  +  PA    PAPA  P      AP+ A     
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220

Query: 196 ATHV---VGGALGWTVPPNASVG 215
           AT          G    P    G
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAG 243

Length = 331

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP-APASAPTPT 182
            SA   +P P   +  P P+ + P P  APAR     PAPAP P     P A ++ P   
Sbjct: 385 PSAAWGAPTPAAPAAPP-PAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAA 443

Query: 183 PRSAPT 188
             +   
Sbjct: 444 ASAGDR 449

Length = 576

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 16/34 (47%), Positives = 17/34 (50%)

Query: 159 PAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
                 P PA  P PA  SAPTP   +AP PAP 
Sbjct: 47  AVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPA 80

Length = 153

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 117 GQKLAIN-VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAP 175
           G+ + +N  S  GS+     + P PQ S   P+P P   +    AP P P P        
Sbjct: 503 GRSIKLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQA 562

Query: 176 ASAPTPTPRSAPTPAPTRQP 195
           +S       +  +P P    
Sbjct: 563 SSNAPAQIPADSSPPPPIPE 582

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPA-------RTPTPAPAPAPEPATTPTP 173
           A+      + P P  S+P   P+   P              R      A   EPA     
Sbjct: 390 AVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA 449

Query: 174 APASAPTPTPRSAPTPAPTRQPATHVVGGALGWT 207
            P ++      ++  PAP+          A  W 
Sbjct: 450 RPVNSALE-RLASVRPAPSALEKAPAKKEAYRWK 482

Length = 647

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 109 SFPGHCLGGQKLAINVSARGSSPAPQ-PSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEP 167
           SFPG        + +     S   P  PS P    S S  S  PAP+   +  P P+PE 
Sbjct: 171 SFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPES 230

Query: 168 ATTPTPAPASAPTPTPRSA-----PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWAR 221
            T P+P P  A  P P         T  PT   A+       G T+  +A    Q  A+
Sbjct: 231 PTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDAIAKAQKHAK 289

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 22/64 (34%), Positives = 29/64 (45%)

Query: 119 KLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
                 +        QPS+P  + + +TPSP PA A  P P PA   EP+ TP    A+A
Sbjct: 376 NPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANA 435

Query: 179 PTPT 182
           P   
Sbjct: 436 PPSL 439

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             ++P  +      Q   + P P   P   PTP PA AP P  TP P    +  P     
Sbjct: 390 HAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLP----SAEPGSDDG 445

Query: 187 PTPAPTRQPAT 197
           P P P RQP  
Sbjct: 446 PAPPPERQPPA 456

Length = 3151

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 16/69 (23%), Positives = 19/69 (27%), Gaps = 3/69 (4%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
                +P    +   P P    A   T A APA        P       P     P PA 
Sbjct: 15  EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDK---PRRERKPKPAS 71

Query: 192 TRQPATHVV 200
             +    VV
Sbjct: 72  LWKLEDFVV 80

Length = 475

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 24/97 (24%), Positives = 27/97 (27%), Gaps = 1/97 (1%)

Query: 117 GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTP-TPAP 175
           G    +      +  A     P    S   P     PA    PA   AP PA     PA 
Sbjct: 579 GGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAE 638

Query: 176 ASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNA 212
           ASA      +AP   P          G  GW      
Sbjct: 639 ASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 136 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT---PAPT 192
           + PA   +     P PA A     APAPA  PA       A+A      +AP    PAP 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 193 RQPATHVVGGALGWTVPPNAS 213
              A            P  A 
Sbjct: 432 ALAAARQASARGPGGAPAPAP 452

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           A G     Q   P      + P P  A A +P+P+ + A    + P  A   A TP   S
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 186 APTPAPTRQPAT 197
              PA       
Sbjct: 429 VDPPAAVPVNPP 440

Length = 614

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 14/62 (22%), Positives = 18/62 (29%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
               G      P++ A   + +       PA      P  A   A  P PA A  P    
Sbjct: 400 GPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRL 459

Query: 184 RS 185
            S
Sbjct: 460 NS 461

Length = 598

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 133  PQPSSPAPQPSGSTPSPV-----PAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
            P   SPA +P+     PV     PA +R+      P  +P   P P     P P P+  P
Sbjct: 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

Query: 188  TPAPTRQPAT 197
             P P   P  
Sbjct: 2926 PPQPQPPPPP 2935

Length = 3151

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
             +    A  P   AP+P+   P PV  PA  P     P  +P    +P  A AP P   
Sbjct: 104 PVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQP-QPEQPLQQPV---SPQVAPAPQPVHS 159

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPPNASV 214
           +        QPA  V          P   +
Sbjct: 160 APQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189

Length = 333

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 14/61 (22%), Positives = 20/61 (32%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
            Q     P  + + P PV  P +T  P     P P  T   AP +     P+        
Sbjct: 123 QQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKE 182

Query: 193 R 193
           +
Sbjct: 183 Q 183

Length = 256

>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 125 SARGSSP--APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           +A+  +P  A QP     QP+   P P P P   P P P P PEP   P P P   P
Sbjct: 388 TAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQP 444

Length = 702

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPA---PAPAPEPATTPTPAPASAPTPTPRSA 186
           +P   P   A   +       PA A    PA   PAPAP     P  A  + P P P + 
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

Query: 187 PTPAPTRQPATHVVGGALGWTVPPNASVG 215
           P       PA      A G + P  A+  
Sbjct: 709 PPAGQADDPAAQPPQAAQGASAPSPAADD 737

Length = 824

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
           +   P+P      P   G  P    APA    P  A A   A  P  A A+ P     +A
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAP---GAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAA 444

Query: 187 PTPAPTRQPATHVV 200
             PAP   P   V 
Sbjct: 445 APPAPAAAPQPAVR 458

Length = 598

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 25/85 (29%), Positives = 30/85 (35%)

Query: 130  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
            + +    S A  P      P P     P P P P P P   P P P   P P       P
Sbjct: 2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

Query: 190  APTRQPATHVVGGALGWTVPPNASV 214
            A   +P+  V    LG  VP   +V
Sbjct: 2950 AGAGEPSGAVPQPWLGALVPGRVAV 2974

Length = 3151

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 131 PAPQPSSPAPQPSGSTPS--PVPAPARTP-TPAPAPAPEPAT-TPTPAPASAPTPTPRSA 186
            AP+P+ PAPQP            P + P +P  APAP+P    P PA  +     P +A
Sbjct: 117 HAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAA 176

Query: 187 PTPAPTRQPATHVVGGALGWTV 208
           P P P  +PA  +        V
Sbjct: 177 PQPEPVAEPAPVMDKPKRKEAV 198

Length = 333

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 30/66 (45%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
           ++ +  P   A  P  STP+ VP  A+TP P   P   PA      P   P P P + P 
Sbjct: 85  AAASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPA 144

Query: 189 PAPTRQ 194
            APT Q
Sbjct: 145 AAPTGQ 150

Length = 226

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPS--PVPAPARTPTPAPAPAPEPA---TTPTPAPASAP 179
           +A   + A    +P        P    VP  +      PA A   A     P PAPA+  
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691

Query: 180 TPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVG 215
            P   +   PAP                 PP A+ G
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG 727

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 121 AINVSARGSSPAPQP-SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           A   SARG   AP P  +PA  P+ +       P      A A     A    PAPA   
Sbjct: 436 ARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD 495

Query: 180 TPTPRSAPTPAPTRQPA 196
            P     P    +  PA
Sbjct: 496 PPPWEELPPEFASPAPA 512

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 124 VSARGSSPAPQPS--SPAPQPSGSTPS-PVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            S   SS A QPS    A QP+G+ P+  V  PA  P   P      A  P         
Sbjct: 400 PSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN-PPSTAPQAVRPAQFKEEKKI 458

Query: 181 PTPRSAPTPAPTRQPA 196
           P  + +     T +P 
Sbjct: 459 PVSKVSSLGPSTLRPI 474

Length = 614

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 146 TPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR---SAPTPAPTRQPATHVVGG 202
             +   A A        P    A  PTP P +A  PTP      P PAP  +P    V  
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184

Query: 203 AL 204
           A 
Sbjct: 185 AD 186

Length = 418

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAP---APAPEPATTPTPAPASAPTPTPRS 185
            S     S+PA       PSP PAP +   P     A  P P       P   P      
Sbjct: 365 ISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEP 424

Query: 186 APTPAPTRQPAT 197
           +PTP      A 
Sbjct: 425 SPTPPANAANAP 436

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 13/75 (17%), Positives = 19/75 (25%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
                       P P+   P P  +  +P P P   P  A   +           +  P 
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579

Query: 181 PTPRSAPTPAPTRQP 195
                 P+P     P
Sbjct: 580 IPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 131  PAPQPSSPA-PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
            PAP     A P P G   +   +PA    PAP   P    TP      A  PT    P P
Sbjct: 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

Query: 190  APTRQPAT 197
            AP   PA 
Sbjct: 2770 APPAAPAA 2777

Length = 3151

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/83 (26%), Positives = 27/83 (32%), Gaps = 8/83 (9%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
            PA QP    P     +P   PAP      AP PA +      P  A  P P    AP  
Sbjct: 131 QPAYQPQPEQPLQQPVSPQVAPAPQPVH-SAPQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189

Query: 190 APTRQPAT----HVV---GGALG 205
              ++       +V    G  L 
Sbjct: 190 DKPKRKEAVIVMNVAAHHGSELN 212

Length = 333

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 28/83 (33%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           +P P     AP      P+     AR P  AP  A  PA  P  A   A  P     P  
Sbjct: 700 APTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA 759

Query: 190 APTRQPATHVVGGALGWTVPPNA 212
           AP R        GA     PP A
Sbjct: 760 APGRARPPAAAPGAPTPQPPPQA 782

Length = 991

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 84  SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPS 143
           +P +R   +  +  + A      +    G  L  +  A   + R  +P   P+ PA    
Sbjct: 382 APGARAAAAVGASAVPAVTA---VTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438

Query: 144 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT--PRSAPTPAPTRQPATHVVG 201
           G   +   AP      A A A          P +       P S   P    +PA     
Sbjct: 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA 498

Query: 202 GALGWTVPPN 211
            +        
Sbjct: 499 PSAATPAAVP 508

Length = 830

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 22/61 (36%)

Query: 117 GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 176
           G  L +   A  +  A    + A   + +  +P PAPA    PA A     A       A
Sbjct: 186 GSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHA 245

Query: 177 S 177
           S
Sbjct: 246 S 246

Length = 547

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 141 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 197
             +GSTP+  PAPA     A +PA   AT P PA A A       AP  A T+ PA 
Sbjct: 190 SVAGSTPATAPAPASAQPAAQSPA---ATQPEPAAAPAAAKAQAPAPQQAGTQNPAK 243

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 20/96 (20%), Positives = 27/96 (28%)

Query: 115 LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 174
           +G    A       +  +  P   A +P+       PA       A APA   A      
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 175 PASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPP 210
            A    P   + P  +          GGA     PP
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP 683

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 25/86 (29%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A   +       PA     +  +P PAPA     APA A      P PA          
Sbjct: 657 VAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPP 210
            A  P    Q A+     A      P
Sbjct: 717 PAAQPPQAAQGASAPSPAADDPVPLP 742

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/87 (21%), Positives = 22/87 (25%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
                   A       P  +G      P PA  P    APA      P PAPA+ P    
Sbjct: 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713

Query: 184 RSAPTPAPTRQPATHVVGGALGWTVPP 210
              P   P +                P
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAADDPVP 740

Length = 824

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 17/69 (24%), Positives = 23/69 (33%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
           G++ A +    A           P     P PAP   P+P     P P   P     + P
Sbjct: 70  GAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

Query: 188 TPAPTRQPA 196
            P P  +P 
Sbjct: 130 APKPEPKPV 138

Length = 226

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 129  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
              PAP+PS PA       P   P  AR   P             PAP S   P   +   
Sbjct: 2571 PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG----PAPPSPLPPDTHAPDP 2626

Query: 189  PAPTRQPATHVVGGALGWTVPP 210
            P P+  PA +        TVPP
Sbjct: 2627 PPPSPSPAANEPDPHPPPTVPP 2648

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 19/76 (25%), Positives = 27/76 (35%)

Query: 116  GGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAP 175
             G    +   A  S    + S P+P      P+ V APA    PA +PA       +  P
Sbjct: 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836

Query: 176  ASAPTPTPRSAPTPAP 191
             + P P     P+   
Sbjct: 2837 TAPPPPPGPPPPSLPL 2852

Length = 3151

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 137 SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP-TPA 190
             A  P+ +      APA     APAPAP  A  P  A  +A     ++   +PA
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPA 248

Length = 547

>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 19/76 (25%), Positives = 22/76 (28%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           A   +P P P      P        P     PT  P P P  A TP     +   P P +
Sbjct: 22  AAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAPAA 81

Query: 186 APTPAPTRQPATHVVG 201
            P        A  V  
Sbjct: 82  PPAAGAALPEALEVPP 97

Length = 306

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 1/64 (1%)

Query: 134 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPA-PEPATTPTPAPASAPTPTPRSAPTPAPT 192
            P++PA                 PTP   PA  +PA         A  P     P     
Sbjct: 174 LPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAA 233

Query: 193 RQPA 196
              A
Sbjct: 234 SARA 237

Length = 327

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 123 NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 182
                 ++P+ QP+ PAP  +   P+  PAPA    PAPA AP     P     +    T
Sbjct: 454 PSPPPAAAPSAQPA-PAPAAAPE-PTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511

Query: 183 PRSA 186
            R  
Sbjct: 512 LRER 515

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 4/100 (4%)

Query: 124 VSARGSSPAPQPSSPAP----QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
            +A  ++PAP    P P     P  ++P+P    A          P+PAT          
Sbjct: 482 RAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541

Query: 180 TPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNW 219
            P P +AP P         V       +      +   +W
Sbjct: 542 APAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDW 581

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEP---ATTPTPAPASAPTPTPRSAP 187
           P+   S  A   + + P+P P P+  P P    AP+    ATTP+P PA A  P P  A 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 188 TPAPTRQPAT 197
              P+  P  
Sbjct: 421 PTEPSPTPPA 430

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 125  SARGSSPAP--QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 182
            +AR +SPA    P+ PA     +TP     PAR PT A  PAP P   P   P    T  
Sbjct: 2727 AARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

Query: 183  PRSAPTPAPTRQPATHVVGGALGWTVPPNASV 214
              ++ + +    P+           + P A++
Sbjct: 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818

Length = 3151

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A  ++PAP  ++     +    +PVPA A     A +   E    P     SA  P   
Sbjct: 424 EAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASD 483

Query: 185 SAPT----PAPTRQPATHVVGGALGWTVPPNAS 213
           + P     PAP     +     A+     P A+
Sbjct: 484 APPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516

Length = 830

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
              P P +P P      P P P P +     PA   +   TPT +PA+ P  T      P
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATF---ALP 104

Query: 190 APTRQPATHVVGGALGWTVPPN 211
           A    P      G L     P 
Sbjct: 105 AGPAGPTIQTEPGQLYPVQVPV 126

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
           P   P    P  + S    VP P  T TPA  PAP       PAPA+AP P+    P  A
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAP---AAAVPAPAAAPPPSDPPQPPRA 140

Query: 191 P 191
           P
Sbjct: 141 P 141

Length = 141

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 17/76 (22%), Positives = 20/76 (26%), Gaps = 9/76 (11%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA---------PTPT 182
              P   A + +    S   APA  P  AP P  +P    T     A         P   
Sbjct: 197 DLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAAN 256

Query: 183 PRSAPTPAPTRQPATH 198
              A  P P       
Sbjct: 257 AAKAAKPEPMPDDQQK 272

Length = 423

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 22/105 (20%), Positives = 30/105 (28%)

Query: 109 SFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPA 168
              G            +AR ++PA   +  AP P+G+  +P  A A       AP   P 
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

Query: 169 TTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNAS 213
               P  +      P  A   AP   P                A 
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700

Length = 824

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 130 SPAPQPS---SPAPQP---SGSTPSPVPAP--ARTPTPAPAPAPEPATTPTPAPASAPTP 181
           +P P  S    PAP P   +   P P  AP  A  P P  A A   A     APA A T 
Sbjct: 73  APTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTS 132

Query: 182 TPRSAPTPAPTRQ 194
                P PA   Q
Sbjct: 133 AASKKPDPAAHTQ 145

Length = 566

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 150 VPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWT-V 208
           V  P         PA  P + PTP P+   +P    +  PA   +  +     A      
Sbjct: 74  VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPE 133

Query: 209 PPNASVGYQNWARNNNFSVG 228
            P+ SV        +   VG
Sbjct: 134 SPSTSVPSSGSDAASTLVVG 153

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 129 SSPAPQPSSPAPQPSG-STPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
           S+     ++PAP     +TP+    PA    PAPA  P+      P+ A+  T     AP
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT-PAP 225

Query: 188 TPAPTRQPATHVVGGALGWTVPPNAS 213
               T   A  +     G + P    
Sbjct: 226 AAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 26/106 (24%)

Query: 117 GQKLA-INVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP---------E 166
           GQ L  I+  A   + A   ++ A   +    +   A A     A +PA          +
Sbjct: 70  GQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLD 129

Query: 167 PATTPT----------------PAPASAPTPTPRSAPTPAPTRQPA 196
            +                     A A+AP     +AP  AP    A
Sbjct: 130 ASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGA 175

Length = 407

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 20/69 (28%), Positives = 26/69 (37%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
               +  G +P+P P++         P+  P P   P PAP  AP PA  P    A A  
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 181 PTPRSAPTP 189
                A T 
Sbjct: 504 AGADDAATL 512

Length = 824

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 125 SARGSSPAPQP---SSPAPQPSG---STPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           ++    PAP P   +S AP P+       +P P  A   T A      PA   T A +  
Sbjct: 78  ASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKK 137

Query: 179 PTPTPRSAPTPAPT 192
           P P   +  +P P 
Sbjct: 138 PDPAAHTQHSPPPF 151

Length = 566

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAP-ASAPTPTPRSAPT 188
                P + AP  + +  +    P +    AP P P  A+ PTP   A  P P P + P 
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178

Query: 189 PAPT 192
           P P 
Sbjct: 179 PTPV 182

Length = 418

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGS-TPSPVPAPARTPTPAPA--PAPEPATTPTPAPAS 177
           A  V A  +      ++ AP+ + +   +   AP   P P        + A    P PA 
Sbjct: 393 ASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAK 452

Query: 178 APTPTPRSAPTPAPTRQPATHVVGGALGW-TVPPNA 212
           A       +       QP       +      PP+A
Sbjct: 453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDA 488

Length = 830

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 142 PSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 196
              S P  + A A  P PAPAPA  P   P PA  +   P P  A  PA   Q A
Sbjct: 95  AMPSMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIP-DAVQPAILGQAA 148

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 146 TPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT-PRSAPTPAPTRQPAT 197
            P P P PA+    AP+P       PTPAP++ P      + P   P R+ AT
Sbjct: 361 VPVPAPQPAKPTAAAPSPV-----RPTPAPSTRPKAAAAANIPPKEPVRETAT 408

Length = 585

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 19/54 (35%), Positives = 20/54 (37%)

Query: 143 SGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 196
            G+   P  A       APA  P  A  P P  A A     R AP PAP    A
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAA 432

Length = 576

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 108 CSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA---PAPA 164
              PG      +     +   S+ AP   +    P+   PS    P  TP PA   P+PA
Sbjct: 72  PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPA 131

Query: 165 PEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGA 203
           P+ +    P  +  P P        A     A+      
Sbjct: 132 PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170

Length = 1352

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 132 APQPSS-----PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             QP S     PA         P P P   P P P P PEP   P  AP   P P P+  
Sbjct: 44  PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP---PKEAPVVIPKPEPKPK 100

Query: 187 PTPAPTRQP 195
           P P P  +P
Sbjct: 101 PKPKPKPKP 109

Length = 246

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 8/65 (12%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
           G S +   ++PA            A A  P  A A A + A     APA+          
Sbjct: 81  GESASDAGAAPAAAA--------EAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPD 132

Query: 188 TPAPT 192
            PA T
Sbjct: 133 IPAGT 137

Length = 464

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 128 GSSPAPQPSSP--APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           G+ PA   ++P   P P+ + P+        P  APA AP  A     A A+AP     +
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAA-AAARAVAAAPARRSPA 429

Query: 186 APTPAPTRQPATHVVGGALGWTVPPNAS 213
               A  RQ +    GGA      P A+
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAA 457

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPT---PAPASAPTPT 182
           A      P P++ AP  +   P+  PA       A A A   A  P    PAP +     
Sbjct: 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAAR 437

Query: 183 PRSAPTPAPTRQPATHVVGGALGWTVPPNASV 214
             SA  P     PA            P  A  
Sbjct: 438 QASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469

Length = 700

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTP 181
            A Q   P P P    P+P    A TP    APAP PA+       +AP P
Sbjct: 46  SAVQEQVPTPAP---APAPAVPSAPTPVAPAAPAPAPASA-GENVVTAPMP 92

Length = 153

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           S   SS +   SS + + +  +P P P+ + +P+  P PA   +    P P+ AP+    
Sbjct: 321 SRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAA 380

Query: 185 SAPTPAPTR 193
           SA  P   R
Sbjct: 381 SAGRPTRRR 389

Length = 1352

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPT-PAPASAPTPT 182
            S  G++PA    + A  P+ +  +     A  P    APA E A  P  PA     T T
Sbjct: 84  ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMVTMT 143

Query: 183 PRSA 186
            R A
Sbjct: 144 VREA 147

Length = 464

>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPS----PVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            R +  A      A   + +          A A  P  A AP P PA  P    A + T
Sbjct: 105 DRRAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163

Length = 271

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 18/57 (31%), Positives = 20/57 (35%)

Query: 141 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 197
             +  T  P PA A T    P P P  A   +P P  AP   P      AP     T
Sbjct: 52  DVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVT 108

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 128 GSSPAPQPSSPAPQPSGST-PSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
           GS+ AP+ + P P+ S +  P+  P P   P   P P P+P   P   P +   P  R  
Sbjct: 322 GSAEAPE-AQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPGTRPD 380

Query: 187 PTPAPTRQPATH 198
               P R    H
Sbjct: 381 SPAVPDRPNGRH 392

This family consists of several Neisseria meningitidis TspB virulence factor proteins. Length = 502

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 12/54 (22%), Positives = 18/54 (33%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           +   ++    P  PA   + +     P  A       A A E   TP    A+A
Sbjct: 73  APPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/96 (23%), Positives = 27/96 (28%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A G    P P+S  P    + P+   APA    PAPA A       + APA        
Sbjct: 593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEH 652

Query: 185 SAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWA 220
                A            A      P A       A
Sbjct: 653 HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA 688

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 141 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV 200
             +G   +P  A       APA AP PA    PA A+AP P     P PAP   PA    
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAA-AAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 201 GGALGWTVPPNASVGYQNWAR 221
            G       P+        A+
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQ 465

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 16/73 (21%), Positives = 22/73 (30%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            + +   PA QP   A   S  +P+        P P   P P  A    P P +      
Sbjct: 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769

Query: 184 RSAPTPAPTRQPA 196
            +A  P       
Sbjct: 770 PAAAPPPSPPSEE 782

Length = 824

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 13/37 (35%), Positives = 15/37 (40%)

Query: 160 APAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 196
           +      P   P PAPA    PTP +   PAP    A
Sbjct: 46  SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASA 82

Length = 153

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 123 NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA---PASAP 179
             +   + P PQ S P P P+   P P         P P P    A++  PA     S+P
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576

Query: 180 TPTPRSAPTPAPTR 193
            P     PTP+PT+
Sbjct: 577 PPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 17/73 (23%), Positives = 24/73 (32%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           SA  S  A   +   P P+ +   P      +       A  P+  P  A    P P   
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 185 SAPTPAPTRQPAT 197
           + P+P P    A 
Sbjct: 422 TEPSPTPPANAAN 434

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 21/71 (29%), Positives = 25/71 (35%)

Query: 132  APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
            A    S    PS   P+  PA    P  A  PA  PA    P  ++ PT  P     P P
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848

Query: 192  TRQPATHVVGG 202
            +      V  G
Sbjct: 2849 SLPLGGSVAPG 2859

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 18/76 (23%), Positives = 23/76 (30%)

Query: 121  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            A+   AR     PQ + P            PAP     P       P  +P+PA      
Sbjct: 2581 AVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640

Query: 181  PTPRSAPTPAPTRQPA 196
              P + P P   R   
Sbjct: 2641 HPPPTVPPPERPRDDP 2656

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 124  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA-PAPAPEPATTPTPAPASAPTPT 182
            VSA    P P  +  A     + P+P   PA   TP  PA    P TT  P PA AP   
Sbjct: 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP-PAPAPPAA 2774

Query: 183  PRSAPTPAPTRQPATHVVGGALGWTVPPNAS 213
            P + P    TR     +         P + +
Sbjct: 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEP-ATTPTPAPASAPTPTP 183
           +A G +  P  +    +P  + P     PA  P  A  PA  P A TP P P + P P  
Sbjct: 729 AAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQ 788

Query: 184 RSAPTPAPTRQP 195
           R    P P   P
Sbjct: 789 RPRGAPTPQPPP 800

Length = 991

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 15/54 (27%), Positives = 17/54 (31%)

Query: 140 PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 193
                + P P  A      P P PA   A +P P  A A  P       PA   
Sbjct: 53  VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENT 106

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 12/56 (21%), Positives = 16/56 (28%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           +  P   +PA QP+   P+  P       P           P   P        RS
Sbjct: 204 TQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 134 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 193
           +P S A     S P   P  AR P  A     EP   P   P   P P P  AP      
Sbjct: 147 EPLSAADLDDLSAPLFPPLDARLPAFAAPIDAEPTMVPPFVPL--PAPEPAPAPASQAPS 204

Query: 194 QPAT 197
             A 
Sbjct: 205 SDAV 208

Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 396

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 15/73 (20%), Positives = 23/73 (31%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
           P  +      S  + + +     +            TT +P+P    +PT  S  T   T
Sbjct: 780 PTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTT 839

Query: 193 RQPATHVVGGALG 205
               T   GG  G
Sbjct: 840 SPSQTTTGGGICG 852

Length = 872

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA----PT 180
            A  +  AP  ++PA        +P    A  P   P  A + A+ P+PA        P 
Sbjct: 685 PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

Query: 181 PTPRSAPTPAPTRQPATHVVGGALGWTVPPNAS 213
           P     P  AP + P       A      P  S
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 19/78 (24%), Positives = 24/78 (30%)

Query: 138 PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 197
           PAP  +G    P PA +  P  A  PA   A     APA A      +  + AP    A 
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 198 HVVGGALGWTVPPNASVG 215
                        +    
Sbjct: 650 PEHHPKHVAVPDASDGGD 667

Length = 824

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 38.6 bits (89), Expect = 0.002
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 120 LAINVSARGSSPAPQPSS-PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           L I ++      A   ++ P P+   S  +  P PA  P  A + AP+PA  PT   A++
Sbjct: 8   LIITIACINLIIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPT--SAAS 65

Query: 179 PTPTPRSAPTPAPTRQP 195
             P    APTPA + + 
Sbjct: 66  RKPDLAQAPTPAASEKF 82

Length = 566

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 131 PAPQPSSPA----PQPSGSTPSPVPAPARTPTPAP-APAPEPATTPTPAPASAPTPTPRS 185
             PQP        P+  G+ P+ +P+PA  PTP    P    A  P    ASAP      
Sbjct: 398 DLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457

Query: 186 AP 187
            P
Sbjct: 458 KP 459

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 12/59 (20%), Positives = 16/59 (27%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
                P +P    +  T      P+  P  A  P P PA    P+P             
Sbjct: 381 PNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 125  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            SAR  +P          P+  +P P P       P P+P+P         P + P P  R
Sbjct: 2595 SARPRAPV-DDRGDPRGPAPPSPLP-PDTHAPDPPPPSPSPAANEPDPHPPPTVPPP-ER 2651

Query: 185  SAPTPAPTR 193
                PAP R
Sbjct: 2652 PRDDPAPGR 2660

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 116 GGQKLAINVSARGSSPAPQPSS-PAPQP-SGSTPSPVPAPARTPTPAPAPAPEPATTPTP 173
           G  +         S P P P+  PA  P   +TP P   P     PAP P  +P    T 
Sbjct: 401 GDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE 460

Query: 174 APASAPTPTPRSAPTPAPTRQP 195
                P    R A      R+P
Sbjct: 461 PAPDDPDDATRKALDALRERRP 482

Length = 3151

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 12/51 (23%), Positives = 16/51 (31%)

Query: 145 STPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP 195
           +       P+    PAP P  + A   T A A A        P     R+ 
Sbjct: 14  AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRE 64

Length = 475

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 134 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA--PASAPTPTPRSAPTPAP 191
           QP   AP P    P+  P  A+ P  A   A  PA  P  A  PA+AP      A  P  
Sbjct: 695 QPPPRAPTPM-RPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 753

Query: 192 TRQPATHVVGGALGWTVPPNASVG 215
            R PA      A G   PP A+ G
Sbjct: 754 ARPPA-----AAPGRARPPAAAPG 772

Length = 991

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 148 SPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP-ATHV 199
               APA    PA A     A    PAPA A    P +A   A      A H 
Sbjct: 194 VAAAAPAAAAAPAAAAPA-AAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHA 245

Length = 547

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 16/45 (35%), Positives = 18/45 (40%)

Query: 159 PAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGA 203
              A A   A  P  A A+AP P P +A  PA     A    G A
Sbjct: 198 APAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKA 242

Length = 547

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 20/74 (27%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 147 PSPVPAPARTPTPAPAPAPEPATTPTPAPASA--PTPTPRSAPTPAPTRQPATHVVGGAL 204
           PSP   P     P P P P P       PA       TP  +P   P    A     G  
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALP--AGPA 108

Query: 205 GWTVPPNASVGYQN 218
           G T+       Y  
Sbjct: 109 GPTIQTEPGQLYPV 122

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 17/65 (26%), Positives = 23/65 (35%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
           SS +    S         PSP  +P+ +  P PA    P   P P+ A +        PT
Sbjct: 327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPT 386

Query: 189 PAPTR 193
               R
Sbjct: 387 RRRAR 391

Length = 1352

>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 17/65 (26%), Positives = 23/65 (35%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
           P P  +  + +   + P P  +PA  P   P P   P T P P P     P         
Sbjct: 315 PRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQ 374

Query: 191 PTRQP 195
           P  +P
Sbjct: 375 PGTRP 379

This family consists of several Neisseria meningitidis TspB virulence factor proteins. Length = 502

>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 14/45 (31%), Positives = 17/45 (37%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPA 168
              R   P   P     + SGS P P    +     APAPA  P+
Sbjct: 111 SVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPS 155

Length = 417

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 152 APARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV-------GGAL 204
           A A       APAP   T    + +    P   +A    P   PAT          G A 
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Query: 205 GWTV 208
            W V
Sbjct: 326 LWFV 329

Length = 656

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           A   + PA      +       +++ T  PA A      P   PA+ P P  R
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPAR 318

Length = 656

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 118 QKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPA-TTPTPAPA 176
             LA  V A        P +   +P    P+  P P   P P   P   P   +    P 
Sbjct: 114 AALAEQVKA----LGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPP 169

Query: 177 SAPTPTPRSAPTPAPTRQP 195
           +A  P     P P  T Q 
Sbjct: 170 TAFYPGNGVTPPPQVTYQS 188

Length = 475

>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597)

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 144 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           G   +  PAPA  P  APA A   A   TP  A++
Sbjct: 11  GEAAAAAPAPAAAPATAPAAAAAAAPAATPPAAAS 45

This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two. Length = 124

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 160 APAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 192
           APA AP       PAPA+A    P +AP     
Sbjct: 284 APAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAE 316

Length = 633

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 14/35 (40%), Positives = 15/35 (42%)

Query: 152 APARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
           APA  P    A AP PA     APA+AP       
Sbjct: 284 APAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGK 318

Length = 633

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
            P  ++PA        +P  A +R   PA  PAP          A       R+A   AP
Sbjct: 53  PPAAAAPAAAQPPPAAAP-AAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 192 TRQPATHVVGGALGWTVPPNA 212
             Q        A         
Sbjct: 112 EAQAPAAPAERAAAENAARRL 132

Length = 484

>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 9/61 (14%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
             +  SP    S  T +  P+           +  P T+  P P +      + A TP  
Sbjct: 138 PAEYYSPKHSSSQGTSTTRPS---------DGSATPNTSAPPTPGNPAAQPEKPAETPKG 188

Query: 192 T 192
            
Sbjct: 189 N 189

This family of proteins is found in eukaryotes. Proteins in this family are typically between 263 and 318 amino acids in length. There is a conserved SFT sequence motif. MSA-2 is a plasma membrane glycoprotein which can be found in Babesia bovis species. Length = 201

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 20/58 (34%), Positives = 24/58 (41%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
           PQP  PAP      P P   P  +P  A      PA++P P PAS P      +  P 
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPP 199

Length = 274

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 134 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 193
           +  S +P P    P     P  TP  +P  +PE  T P+P    A  P  R+A   AP R
Sbjct: 3   RARSRSPSP----PRRPSPPRPTPPRSPDASPE-ETPPSPPGPGAEPPPGRAAGPAAPRR 57

Query: 194 QPATHVVGGALGWTVPPNASVGYQN 218
           +P     G     + PP   +G  +
Sbjct: 58  RPRGCPAGVTFSSSAPPRPPLGLDD 82

Length = 318

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 12/40 (30%), Positives = 13/40 (32%)

Query: 139 APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           A  P         A      PA A A   A    PA A+A
Sbjct: 36  AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAA 75

Length = 155

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 142 PSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP 195
             G  P  +        P PAP P   T   P+P   PTP P + P  A     
Sbjct: 345 SYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPV-RPTPAPSTRPKAAAAANI 397

Length = 585

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 145 STPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA---PTPAPTRQPAT 197
           S P         P   P  AP P  +P  +PAS  +  P SA    +P+     AT
Sbjct: 75  SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT 130

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 12/79 (15%)

Query: 128 GSSPAPQPSSPAPQPSGSTP----------SPVPAPARTPTPAPAPAPEPATTPTPAPAS 177
           G    P     A Q   + P              AP+  P     P       P PAP  
Sbjct: 48  GDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVE--PEPAPVE 105

Query: 178 APTPTPRSAPTPAPTRQPA 196
            P P P   P P P  Q  
Sbjct: 106 PPKPKPVEKPKPKPKPQQK 124

Length = 226

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 118 QKLAINVSARGSSPAPQPS-SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 176
            ++A   +    +PAP PS  PAP    +  +   A   +P PA A  P P       P+
Sbjct: 366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPS 425

Query: 177 SAPTPTPRSAPTP 189
             P     +AP  
Sbjct: 426 PTPPANAANAPPS 438

Length = 620

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 25/89 (28%), Positives = 31/89 (34%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            +  GS+ AP   +P        P      A TP   P      A +   APA+A  P P
Sbjct: 471 PADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP 530

Query: 184 RSAPTPAPTRQPATHVVGGALGWTVPPNA 212
            + P       PA    G A    V  NA
Sbjct: 531 EARPPTPAAAAPAARAGGAAAALDVLRNA 559

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 2/80 (2%)

Query: 116 GGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA--PAPAPEPATTPTP 173
           G      +      + A   +        + P      A  P     P  A EPA     
Sbjct: 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA 498

Query: 174 APASAPTPTPRSAPTPAPTR 193
             A+ P   P +    A +R
Sbjct: 499 PSAATPAAVPDARAPAAASR 518

Length = 830

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 178
           A    + A  P+ + P+   A A  P PA A AP  A     A    
Sbjct: 195 AAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGK 241

Length = 547

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 16/59 (27%), Positives = 20/59 (33%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
            A  +       + A   + S  +  P PA  P  A A AP P    T  PA      P
Sbjct: 191 VAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAP 249

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 17/58 (29%), Positives = 20/58 (34%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           AP      P+P     +  PAPA    P  +    P       PA A  P P   P P
Sbjct: 80  APLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQP 137

Length = 141

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 152 APARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATH 198
           A A     A A A   A  P  A A+A       A +PA  +  A +
Sbjct: 80  AAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAEN 126

Length = 407

>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 14/67 (20%), Positives = 21/67 (31%)

Query: 117 GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 176
             K  + V    +    + + P        P   P PA+  +    P P    +     A
Sbjct: 88  EDKTQVKVKVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKA 147

Query: 177 SAPTPTP 183
            AP  TP
Sbjct: 148 PAPALTP 154

Length = 417

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 133 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP-------EPATTPTPAPASAPT-PTPR 184
           P+ +      +  TP+  P  A     AP   P       EPA       A+A   P   
Sbjct: 249 PKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALE 308

Query: 185 SAPTPAPTRQPAT 197
             P P    +P  
Sbjct: 309 DKPRPLGIARPGG 321

Length = 400

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           A    A  +   P+  SPA  PS S P+ +   A   +        P   P  APA    
Sbjct: 314 AAEAVAGAAVLGPRAQSPA-TPSSSLPTDIGNKAVVSSAKKEAEEVP-PLPQAAPAVVK- 370

Query: 181 PTPRSAPTPAPTRQPATHVVGGALGWTVP 209
           P P   PTP P    A   +    G   P
Sbjct: 371 PGPMEIPTPVPPPGLAIPSLVAPPGLVAP 399

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 16/79 (20%), Positives = 21/79 (26%)

Query: 117 GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 176
           G+K     +   +   P       +           P         P PE      P P 
Sbjct: 44  GEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPE 103

Query: 177 SAPTPTPRSAPTPAPTRQP 195
             P P P   P P P  +P
Sbjct: 104 PEPEPEPEPEPEPEPEPEP 122

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 16/34 (47%), Positives = 17/34 (50%)

Query: 146 TPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           TP   P P  TP P P P P+P   P P PA  P
Sbjct: 919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
              +SPAP+PS  AP           AP   P P+PAP  +     +PAP S      R 
Sbjct: 91  ESSASPAPKPSEIAP----------TAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRI 140

Query: 186 APTPAPTR 193
             +P   +
Sbjct: 141 FASPLAKK 148

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 8/76 (10%)

Query: 140 PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP---APASAPTPTPRSAPTPAPTRQPA 196
             P     +   A A      P  AP PA T      A  S  TP P        TRQ  
Sbjct: 117 KPPGYELVTADQAKASQVFSVPGTAPRPAMTDPEKLLAEGSIITPLPVLPYQQQATRQAR 176

Query: 197 THVVGGALGWTVPPNA 212
              VGG     +PP  
Sbjct: 177 RLYVGG-----IPPEF 187

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 15/57 (26%), Positives = 21/57 (36%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           V+   +   P+P+   P        P P P         PAP+P   P     +APT
Sbjct: 90  VAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146

Length = 226

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 24/85 (28%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 132  APQPSSPAPQPSGSTPSPVPAPARTPTPAP-APAPEPATTPTPAPASAPTPTPRSAPTPA 190
                S   P P   TP P P    + TP P  PA     +P    A AP   P    TP 
Sbjct: 2693 GSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG 2752

Query: 191  PTRQPATHVVGGALGWTVPPNASVG 215
               +PA            PP A   
Sbjct: 2753 GPARPARPPTTAGPPAPAPPAAPAA 2777

Length = 3151

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 146 TPSPVPAPARTPTPA-PAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV 200
             +  PA A  P  A PA A   A  P PA A+AP     +A         A+  V
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAV 249

Length = 547

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 19/81 (23%), Positives = 30/81 (37%)

Query: 118 QKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPAS 177
           Q    N S   ++PA    S   +   +  +    P +  T  PA       T    PA+
Sbjct: 165 QNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPAT 224

Query: 178 APTPTPRSAPTPAPTRQPATH 198
           +  P   +A   A +  PA+H
Sbjct: 225 SGKPKSGAASARALSSAPASH 245

Length = 327

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 13/57 (22%), Positives = 18/57 (31%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           +     P   +   +G  P P PA A   +P P  AP          A A      +
Sbjct: 54  TVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVTVA 110

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 144 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
           G+ P+  PA      PAPA A   A    PA  +   
Sbjct: 282 GAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGK 318

Length = 633

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 15/92 (16%)

Query: 120 LAINVSARGSSPAPQPSSPAPQPSG-STPSPVPAPAR--------------TPTPAPAPA 164
           LA   +A  ++  P P++     S  + P+  PAP                    A   A
Sbjct: 51  LAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAA 110

Query: 165 PEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 196
           PE      PA  +A     R     A      
Sbjct: 111 PEAQAPAAPAERAAAENAARRLARAAAAAPRP 142

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 1/70 (1%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAP-APAPEPATTPTPAPASAPTPTPRSAPTP 189
           PAP     A + +      V   A    P   APA           A        +AP P
Sbjct: 83  PAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRP 142

Query: 190 APTRQPATHV 199
                 A  V
Sbjct: 143 RVPADAAAAV 152

Length = 484

>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 124 VSARGSSPAPQPSS----PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPAS 177
           V A     +P+ SS       +PS  + +P  +   TP    A   +PA TP    +S
Sbjct: 135 VKAPAEYYSPKHSSSQGTSTTRPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSS 192

This family of proteins is found in eukaryotes. Proteins in this family are typically between 263 and 318 amino acids in length. There is a conserved SFT sequence motif. MSA-2 is a plasma membrane glycoprotein which can be found in Babesia bovis species. Length = 201

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 36.3 bits (85), Expect = 0.004
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 152 APARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV 200
           A A    P    A        PA A+A    P +AP  A       HVV
Sbjct: 35  AAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAE-AEGHVV 82

Length = 155

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query: 155 RTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
           R+    P   P+P  TP P P   P PTP   PTPA
Sbjct: 914 RSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPA 949

Length = 1250

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 115 LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 174
           +G     I  +    +   +  +PAP  +GS P+P PA  R P  AP P          A
Sbjct: 193 VGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAA-RAPHAAPDPPAPAPAPAKTA 251

Query: 175 PASAPTPTPRSAPTPAPT 192
             +A  P       P  T
Sbjct: 252 APAAAAPVSSGDSGPYVT 269

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           + + + P+ +  +P  +P+ +TP        T   AP   P   T  +    +  +PT +
Sbjct: 40  APQSTPPSTKVEAPQSKPNATTPP------STKVEAPQQTPNATTPSSTKVETPQSPTTK 93

Query: 185 SAPT 188
             PT
Sbjct: 94  QVPT 97

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PLN03148	167	Blue copper-like protein; Provisional	100.0
PF02298	85	Cu_bind_like: Plastocyanin-like domain; InterPro:	99.96
PRK02710	119	plastocyanin; Provisional	98.9
COG3794	128	PetE Plastocyanin [Energy production and conversio	98.68
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	98.52
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	98.48
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	98.45
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	98.34
TIGR02657	83	amicyanin amicyanin. Members of this family are am	97.72
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	97.34
COG4454	158	Uncharacterized copper-binding protein [Inorganic	96.84
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	96.47
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	96.38
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	96.14
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.0
KOG3858	233	consensus Ephrin, ligand for Eph receptor tyrosine	95.76
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	94.08
PF00812	145	Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a	93.29
TIGR02695	125	azurin azurin. Azurin is a blue copper-binding pro	91.88
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	90.67
PRK10378	375	inactive ferrous ion transporter periplasmic prote	90.24
PLN02604	566	oxidoreductase	88.58
PLN02354	552	copper ion binding / oxidoreductase	88.06
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	87.98
PF07732	117	Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01	87.74
PRK02888	635	nitrous-oxide reductase; Validated	87.62
PLN02168	545	copper ion binding / pectinesterase	84.09
PF10731	65	Anophelin: Thrombin inhibitor from mosquito; Inter	84.07
PF00116	120	COX2: Cytochrome C oxidase subunit II, periplasmic	83.95
PLN02835	539	oxidoreductase	83.73
TIGR02866	201	CoxB cytochrome c oxidase, subunit II. Cytochrome	82.24
TIGR01480	587	copper_res_A copper-resistance protein, CopA famil	81.24
PRK09723	421	putative fimbrial-like adhesin protein; Provisiona	81.09
PF08139	25	LPAM_1: Prokaryotic membrane lipoprotein lipid att	81.09
TIGR03388	541	ascorbase L-ascorbate oxidase, plant type. Members	80.46

>PLN03148 Blue copper-like protein; Provisional

Probab=100.00  E-value=6.5e-39  Score=266.18  Aligned_cols=107  Identities=34%  Similarity=0.632  Sum_probs=98.3

Q ss_pred             HhhhcccceEEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCc
Q 026789           15 LVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPA   94 (233)
Q Consensus        15 l~~~~~a~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~   94 (233)
                      ++..++++++|+|||+.||+.    ..+|++|+++++|+|||+|+|+|+.+.|+|+||++++|++|+.++++..+++|++
T Consensus        13 ~~~~~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d   88 (167)
T PLN03148         13 FSASATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKD   88 (167)
T ss_pred             HhhhhccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCc
Confidence            333455677999999999985    4589999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeccCCCeeEecCCCCCCCCCCeeeEEecC
Q 026789           95 SVTLTASGPHYFICSFPGHCLGGQKLAINVSA  126 (233)
Q Consensus        95 ~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~  126 (233)
                      .|+|++.|.|||||+ .+||++||||.|+|..
T Consensus        89 ~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~  119 (167)
T PLN03148         89 FIPLNKAKRYYFICG-NGQCFNGMKVTILVHP  119 (167)
T ss_pred             EEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence            999999999999999 5899999999999953

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=99.96  E-value=3.2e-30  Score=193.05  Aligned_cols=85  Identities=48%  Similarity=1.096  Sum_probs=70.1

Q ss_pred             CccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCC
Q 026789           33 WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPG  112 (233)
Q Consensus        33 W~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~  112 (233)
                      |+++.+ ..+|++||++++|+|||+|+|+|..+.|+|+||++++|++|+.++++..+.+|++.|+|+++|.+||||++++
T Consensus         1 W~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~   79 (85)
T PF02298_consen    1 WTIPTN-ASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG   79 (85)
T ss_dssp             SSSSSS-TTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred             CccCCC-ccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence            777653 3799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 026789          113 HCLGGQ  118 (233)
Q Consensus       113 hC~~Gm  118 (233)
                      ||++||
T Consensus        80 HC~~Gq   85 (85)
T PF02298_consen   80 HCQKGQ   85 (85)
T ss_dssp             TTTTT-
T ss_pred             cccccC
Confidence            999998

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.

>PRK02710 plastocyanin; Provisional

Probab=98.90  E-value=2.3e-08  Score=79.02  Aligned_cols=72  Identities=18%  Similarity=0.195  Sum_probs=50.9

Q ss_pred             cCeeeeeCCEEEEEec-CCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFA-AGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~-~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +..++++||+|.|... ...|+++.-.   .+....+ .+....+....++++.+|.|.|+|.  .|=+.||+..|.|.
T Consensus        47 ~~i~v~~Gd~V~~~N~~~~~H~v~~~~---~~~~~~~-~~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~  119 (119)
T PRK02710         47 STLTIKAGDTVKWVNNKLAPHNAVFDG---AKELSHK-DLAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE  119 (119)
T ss_pred             CEEEEcCCCEEEEEECCCCCceEEecC---Ccccccc-ccccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence            6789999999999764 4569997521   1111111 1111223357899999999999999  89999999999983

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=98.68  E-value=2e-07  Score=74.90  Aligned_cols=73  Identities=26%  Similarity=0.286  Sum_probs=54.7

Q ss_pred             cCeeeeeCCEEEEEecCC-CceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +..++++||+|.|.+... .|||+-+...+.+.   ...+..-.+-.++++++++|.|.|+|.  -|-..|||..|.|.
T Consensus        54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g---~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~--PH~~~gM~G~IvV~  127 (128)
T COG3794          54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPEG---SGTLKAGINESFTHTFETPGEYTYYCT--PHPGMGMKGKIVVG  127 (128)
T ss_pred             cEEEECCCCEEEEEECCCCCceEEEeCCCCccc---ccccccCCCcceEEEecccceEEEEec--cCCCCCcEEEEEeC
Confidence            679999999999999876 89999874431111   111111112357899999999999999  78899999999985

>TIGR03102 halo_cynanin halocyanin domain

Probab=98.52  E-value=7.7e-07  Score=70.26  Aligned_cols=89  Identities=21%  Similarity=0.325  Sum_probs=62.3

Q ss_pred             cceEEEec--CCC-CCccCCCCCCCccccccCeeeeeCCEEEEEecC--CCceEEEEcCCCCCcCCCCCCCCcCCCCCce
Q 026789           21 AQTRHVVG--DAL-GWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA--GNHDVTRVTQSSFNACNTTSPLSRTTNSPAS   95 (233)
Q Consensus        21 a~~~~~VG--g~~-GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~--~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~   95 (233)
                      ...++.||  ++. +..+.|          +..++++||+|.|.++.  ..|+|+......|+.    ............
T Consensus        22 ~~~~v~~G~~~~~g~~~F~P----------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~~~~~G~t~s   87 (115)
T TIGR03102        22 DEVTVDVGAEANGGGFAFDP----------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SERVSEEGTTYE   87 (115)
T ss_pred             ceEEEEecccCCCCceeEeC----------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cccccCCCCEEE
Confidence            44567788  332 355543          56899999999999864  579998643334442    111112234689


Q ss_pred             EEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           96 VTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        96 v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ++|+++|.|-|+|.  -|=..|||..|.|.
T Consensus        88 ~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~  115 (115)
T TIGR03102        88 HTFEEPGIYLYVCV--PHEALGMKGAVVVE  115 (115)
T ss_pred             EEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence            99999999999999  67778999999983

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>TIGR02656 cyanin_plasto plastocyanin

Probab=98.48  E-value=9.5e-07  Score=67.43  Aligned_cols=75  Identities=24%  Similarity=0.302  Sum_probs=51.8

Q ss_pred             cCeeeeeCCEEEEEecC-CCceEEEEcCCCCC------cCCCC-CCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCe
Q 026789           48 ANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFN------ACNTT-SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQK  119 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~y~------~C~~~-~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk  119 (233)
                      +..++++||+|.|.... ..|+|+..+.. ..      ..... +.+.........++++.+|.|.|+|.  .||+.||+
T Consensus        17 ~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~   93 (99)
T TIGR02656        17 AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMV   93 (99)
T ss_pred             CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCE
Confidence            57899999999998653 56999874321 00      01110 01111123346889999999999999  99999999


Q ss_pred             eeEEec
Q 026789          120 LAINVS  125 (233)
Q Consensus       120 ~~I~V~  125 (233)
                      ..|.|.
T Consensus        94 G~I~V~   99 (99)
T TIGR02656        94 GKITVE   99 (99)
T ss_pred             EEEEEC
Confidence            999884

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=98.45  E-value=5.4e-07  Score=68.63  Aligned_cols=76  Identities=26%  Similarity=0.317  Sum_probs=54.4

Q ss_pred             cCeeeeeCCEEEEEe-cCCCceEEEEcCC--CCCcCCCCCCC---CcCCCC-CceEEeccCCCeeEecCCCCCCCCCCee
Q 026789           48 ANQTFTVGDTLVFNF-AAGNHDVTRVTQS--SFNACNTTSPL---SRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKL  120 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y-~~~~H~V~~V~~~--~y~~C~~~~~~---~~~~~G-~~~v~l~~~G~~yFic~~~~hC~~Gmk~  120 (233)
                      +.+++++||+|.|.+ ....|+|+.....  .-..+......   .....| ...++++++|.|.|+|. + |...||+.
T Consensus        17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G   94 (99)
T PF00127_consen   17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG   94 (99)
T ss_dssp             SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred             CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence            578999999999998 4668999998522  11112211111   112233 46888999999999999 7 99999999


Q ss_pred             eEEec
Q 026789          121 AINVS  125 (233)
Q Consensus       121 ~I~V~  125 (233)
                      .|.|.
T Consensus        95 ~i~V~   99 (99)
T PF00127_consen   95 TIIVE   99 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99884

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>TIGR02375 pseudoazurin pseudoazurin

Probab=98.34  E-value=3.2e-06  Score=66.84  Aligned_cols=75  Identities=23%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEecCC
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~~  127 (233)
                      +..++++||+|.|.+....|+|..+.....+.   .+....-.+....++++++|.|-|+|.  .|=..||+..|.|...
T Consensus        15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~   89 (116)
T TIGR02375        15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP   89 (116)
T ss_pred             CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence            67899999999999987789998753211111   111111123457899999999999999  8999999999999874

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>TIGR02657 amicyanin amicyanin

Probab=97.72  E-value=0.00018  Score=53.08  Aligned_cols=72  Identities=19%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             cCeeeeeCCEEEEEecCC-CceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +..++.+||+|.|..... .|+|...+....+ =+.... .........++++++|.|-|+|..+.    +||..|.|.
T Consensus        11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~-~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~   83 (83)
T TIGR02657        11 PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGP-MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE   83 (83)
T ss_pred             CEEEECCCCEEEEEECCCCCccEEecCCCCcc-cccccc-ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence            468899999999988754 6999875432111 001111 11123357899999999999999864    599999873

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

>TIGR03095 rusti_cyanin rusticyanin

Probab=97.34  E-value=0.00062  Score=55.93  Aligned_cols=73  Identities=18%  Similarity=0.397  Sum_probs=49.1

Q ss_pred             CeeeeeCCEEEEEecCC----CceEEEEcCC-CCC------------cCCCCCCCCcCCCC-----CceEEeccCCCeeE
Q 026789           49 NQTFTVGDTLVFNFAAG----NHDVTRVTQS-SFN------------ACNTTSPLSRTTNS-----PASVTLTASGPHYF  106 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~----~H~V~~V~~~-~y~------------~C~~~~~~~~~~~G-----~~~v~l~~~G~~yF  106 (233)
                      .++++.||.|.|.+.+.    .|........ .+.            .|....+   ..+|     ..+++++++|.|||
T Consensus        53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywy  129 (148)
T TIGR03095        53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWY  129 (148)
T ss_pred             EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEE
Confidence            45679999999988764    4766654321 111            1211110   1122     34677789999999


Q ss_pred             ecCCCCCCCCCCeeeEEe
Q 026789          107 ICSFPGHCLGGQKLAINV  124 (233)
Q Consensus       107 ic~~~~hC~~Gmk~~I~V  124 (233)
                      +|.+.+|-+.||...|.|
T Consensus       130 hC~~pgH~~~GM~G~iiV  147 (148)
T TIGR03095       130 LCTYPGHAENGMYGKIVV  147 (148)
T ss_pred             EcCChhHHHCCCEEEEEE
Confidence            999999999999998887

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]

Probab=96.84  E-value=0.013  Score=48.56  Aligned_cols=79  Identities=22%  Similarity=0.344  Sum_probs=50.2

Q ss_pred             ccCeeeeeCCEEEEEecCC---CceEEEE----cCCCCCcC--------CCCCCCCc--CCCCCceEEeccCCCeeEecC
Q 026789           47 AANQTFTVGDTLVFNFAAG---NHDVTRV----TQSSFNAC--------NTTSPLSR--TTNSPASVTLTASGPHYFICS  109 (233)
Q Consensus        47 a~~~~f~vGD~L~F~y~~~---~H~V~~V----~~~~y~~C--------~~~~~~~~--~~~G~~~v~l~~~G~~yFic~  109 (233)
                      .++..++.|.++.|.-.+.   .|..+.-    ....+..=        +..+.+..  -.++..++.++.+|.|=|+|.
T Consensus        62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~  141 (158)
T COG4454          62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN  141 (158)
T ss_pred             CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence            4667889999999965543   3665542    00011110        11111111  123345677788999999999


Q ss_pred             CCCCCCCCCeeeEEec
Q 026789          110 FPGHCLGGQKLAINVS  125 (233)
Q Consensus       110 ~~~hC~~Gmk~~I~V~  125 (233)
                      +++|-+.||...|+|+
T Consensus       142 iPGHy~AGM~g~itV~  157 (158)
T COG4454         142 IPGHYEAGMVGEITVS  157 (158)
T ss_pred             CCCcccCCcEEEEEeC
Confidence            9999999999999986

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=96.47  E-value=0.013  Score=50.31  Aligned_cols=78  Identities=18%  Similarity=0.284  Sum_probs=50.3

Q ss_pred             eeeCCEEEEEecCC---CceEEEE-cCCCCCcCCCC---CCCCc---C------C----CCC-ceEEe-c-cCCCeeEec
Q 026789           52 FTVGDTLVFNFAAG---NHDVTRV-TQSSFNACNTT---SPLSR---T------T----NSP-ASVTL-T-ASGPHYFIC  108 (233)
Q Consensus        52 f~vGD~L~F~y~~~---~H~V~~V-~~~~y~~C~~~---~~~~~---~------~----~G~-~~v~l-~-~~G~~yFic  108 (233)
                      +-.|-.|.|+|.+.   .|++..| +...+..|...   +.+..   .      .    .|. ....+ + .+|.||+.|
T Consensus        90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC  169 (196)
T PF06525_consen   90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC  169 (196)
T ss_pred             EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence            45788888888653   5999888 33333444221   11210   0      1    222 22222 2 689999999


Q ss_pred             CCCCCCCCCCeeeEEecCCCC
Q 026789          109 SFPGHCLGGQKLAINVSARGS  129 (233)
Q Consensus       109 ~~~~hC~~Gmk~~I~V~~~~a  129 (233)
                      ++.+|-+.||-..+.|++.-.
T Consensus       170 ~ipGHA~sGMw~~LiVs~~vt  190 (196)
T PF06525_consen  170 GIPGHAESGMWGVLIVSSNVT  190 (196)
T ss_pred             cCCChhhcCCEEEEEEecCcc
Confidence            999999999999999987654

The most closely related proteins characterised as functionally different are the rusticyanins.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=96.38  E-value=0.0019  Score=49.30  Aligned_cols=65  Identities=18%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             cCeeeeeCCEEEEEec---CCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEe--ccCCCeeEecCCCCCCCCCCeeeE
Q 026789           48 ANQTFTVGDTLVFNFA---AGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTL--TASGPHYFICSFPGHCLGGQKLAI  122 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~---~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l--~~~G~~yFic~~~~hC~~Gmk~~I  122 (233)
                      +..+++.|+.+.+.+.   ...|+++.-.   ++.   .  .....+...++++  +++|.|=|+|+++.+    ||..|
T Consensus        35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~---~~~---~--~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l  102 (104)
T PF13473_consen   35 STITVKAGQPVTLTFTNNDSRPHEFVIPD---LGI---S--KVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL  102 (104)
T ss_dssp             -EEEEETTCEEEEEEEE-SSS-EEEEEGG---GTE---E--EEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred             CEEEEcCCCeEEEEEEECCCCcEEEEECC---Cce---E--EEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence            5789999994444443   2347775421   000   0  0112233355666  899999999997652    77766


Q ss_pred             Ee
Q 026789          123 NV  124 (233)
Q Consensus       123 ~V  124 (233)
                      .|
T Consensus       103 iV  104 (104)
T PF13473_consen  103 IV  104 (104)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=96.14  E-value=0.015  Score=47.21  Aligned_cols=64  Identities=9%  Similarity=0.126  Sum_probs=39.5

Q ss_pred             CCccccccCeeeeeCCEEEEEecCC---CceEEEEcCCCCCcCCCCCCCCcCCCC-C--ceEEeccCCCeeEecCCCCCC
Q 026789           41 ATYSNWAANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNS-P--ASVTLTASGPHYFICSFPGHC  114 (233)
Q Consensus        41 ~~Y~~Wa~~~~f~vGD~L~F~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G-~--~~v~l~~~G~~yFic~~~~hC  114 (233)
                      .+|.-=.+.++++.||.|.+.+.+.   .|++..   .+|.   .+   .....| .  .+++.+++|.|.|+|+.  ||
T Consensus        54 ~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP  122 (135)
T TIGR03096        54 FNVLNEPEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HP  122 (135)
T ss_pred             eeeEEcCCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CC
Confidence            3455555778999999998877542   255544   2221   11   111223 2  35666899999999995  56


Q ss_pred             C
Q 026789          115 L  115 (233)
Q Consensus       115 ~  115 (233)
                      .
T Consensus       123 ~  123 (135)
T TIGR03096       123 K  123 (135)
T ss_pred             h
Confidence            4

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=96.00  E-value=0.019  Score=58.11  Aligned_cols=11  Identities=9%  Similarity=0.235  Sum_probs=5.7

Q ss_pred             eeeecC---CCCcc
Q 026789          197 THVVGG---ALGWT  207 (233)
Q Consensus       197 ~~~VG~---~~GW~  207 (233)
                      .|+|-.   ...|.
T Consensus       619 ~~k~e~~Mrr~nW~  632 (1102)
T KOG1924|consen  619 VYKPEVPMRRFNWS  632 (1102)
T ss_pred             cCCCCCccccCCcc
Confidence            466654   34464

>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]

Probab=95.76  E-value=0.035  Score=48.89  Aligned_cols=80  Identities=21%  Similarity=0.419  Sum_probs=48.6

Q ss_pred             eeeeeCCEEEE---EecCCC------ceEEEEcCCCCCcCCC-CCCCC------------------cCCCCCceEEeccC
Q 026789           50 QTFTVGDTLVF---NFAAGN------HDVTRVTQSSFNACNT-TSPLS------------------RTTNSPASVTLTAS  101 (233)
Q Consensus        50 ~~f~vGD~L~F---~y~~~~------H~V~~V~~~~y~~C~~-~~~~~------------------~~~~G~~~v~l~~~  101 (233)
                      +.+++||.|-+   +|+.+.      .=+++|++.+|+.|+. +.+..                  .++--...+++..-
T Consensus        45 I~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG  124 (233)
T KOG3858|consen   45 IYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPG  124 (233)
T ss_pred             EEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCC
Confidence            45678999988   565432      2356899999999996 33221                  11211223444433


Q ss_pred             CCeeEecCC-----------CCCCCC-CCeeeEEecCCCC
Q 026789          102 GPHYFICSF-----------PGHCLG-GQKLAINVSARGS  129 (233)
Q Consensus       102 G~~yFic~~-----------~~hC~~-Gmk~~I~V~~~~a  129 (233)
                      -+||||++-           ++-|.. .||+.+.|.....
T Consensus       125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~  164 (233)
T KOG3858|consen  125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR  164 (233)
T ss_pred             CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence            367777763           345654 5999999977544

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=94.08  E-value=0.045  Score=46.55  Aligned_cols=31  Identities=26%  Similarity=0.516  Sum_probs=27.3

Q ss_pred             ccCCCeeEecCCCCCCCCCCeeeEEecCCCC
Q 026789           99 TASGPHYFICSFPGHCLGGQKLAINVSARGS  129 (233)
Q Consensus        99 ~~~G~~yFic~~~~hC~~Gmk~~I~V~~~~a  129 (233)
                      ..+|.||+.|++.+|-+.||-..+.|++.-.
T Consensus       159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt  189 (195)
T TIGR03094       159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT  189 (195)
T ss_pred             CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence            3789999999999999999999999877543

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO)

Probab=93.29  E-value=0.032  Score=45.84  Aligned_cols=35  Identities=20%  Similarity=0.403  Sum_probs=25.1

Q ss_pred             CeeeeeCCEEEE---EecCC--------CceEEEEcCCCCCcCCCC
Q 026789           49 NQTFTVGDTLVF---NFAAG--------NHDVTRVTQSSFNACNTT   83 (233)
Q Consensus        49 ~~~f~vGD~L~F---~y~~~--------~H~V~~V~~~~y~~C~~~   83 (233)
                      ...+++||.|-|   +|...        ...+++|++.+|+.|+..
T Consensus        23 ~i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~   68 (145)
T PF00812_consen   23 VIEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLT   68 (145)
T ss_dssp             EEEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSS
T ss_pred             EEEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCC
Confidence            357789999998   55443        467889999999999953

These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....

>TIGR02695 azurin azurin

Probab=91.88  E-value=0.99  Score=36.20  Aligned_cols=30  Identities=37%  Similarity=0.659  Sum_probs=23.0

Q ss_pred             CceEEec----cCCC-eeEecCCCCCCCCCCeeeEE
Q 026789           93 PASVTLT----ASGP-HYFICSFPGHCLGGQKLAIN  123 (233)
Q Consensus        93 ~~~v~l~----~~G~-~yFic~~~~hC~~Gmk~~I~  123 (233)
                      .++|+++    ++|. |=|+|++++|=. .||..+.
T Consensus        90 s~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~  124 (125)
T TIGR02695        90 KTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK  124 (125)
T ss_pred             eEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence            3667775    3675 779999999986 6988765

Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=90.67  E-value=0.59  Score=42.74  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=48.2

Q ss_pred             CeeeeeCCEEEEEecCC-----CceEEEEcCCCCCcCCCCCCCCcCCCC-C--ceEEeccCCCeeEecCC----CCCCCC
Q 026789           49 NQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNS-P--ASVTLTASGPHYFICSF----PGHCLG  116 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G-~--~~v~l~~~G~~yFic~~----~~hC~~  116 (233)
                      ..+++.||.|++++.+.     .|++..=-....   +..........| .  ..|+++.+|+|||.|..    ..|-..
T Consensus        60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~  136 (311)
T TIGR02376        60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS  136 (311)
T ss_pred             eEEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence            57889999999888764     466543100000   000111112223 2  46777889999999995    347788


Q ss_pred             CCeeeEEecCC
Q 026789          117 GQKLAINVSAR  127 (233)
Q Consensus       117 Gmk~~I~V~~~  127 (233)
                      ||...+.|...
T Consensus       137 Gl~G~liV~~~  147 (311)
T TIGR02376       137 GMNGAIMVLPR  147 (311)
T ss_pred             CcceEEEeecc
Confidence            99999999754

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional

Probab=90.24  E-value=2.1  Score=40.34  Aligned_cols=30  Identities=17%  Similarity=0.235  Sum_probs=21.2

Q ss_pred             CceEEeccCCCeeEecCCCCCCCCCCeeeEEecCC
Q 026789           93 PASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (233)
Q Consensus        93 ~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~~  127 (233)
                      ...++| ++|.|-|+|+.  |  ..|+..|.|...
T Consensus        89 ~l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~  118 (375)
T PRK10378         89 KMTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE  118 (375)
T ss_pred             EEEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence            345556 69999999976  4  335777888654

>PLN02604 oxidoreductase

Probab=88.58  E-value=2.6  Score=41.70  Aligned_cols=81  Identities=11%  Similarity=0.096  Sum_probs=49.7

Q ss_pred             cccCeeeeeCCEEEEEecCCC----ceEE-----EEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCCCCC
Q 026789           46 WAANQTFTVGDTLVFNFAAGN----HDVT-----RVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGH  113 (233)
Q Consensus        46 Wa~~~~f~vGD~L~F~y~~~~----H~V~-----~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~~~h  113 (233)
                      ....++++.||.|++++.+..    |++.     +.....+|.= ..-.......|   ..+|+++..|++||-|-...|
T Consensus        53 pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~-~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q  131 (566)
T PLN02604         53 PGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGT-EGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQ  131 (566)
T ss_pred             CCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCC-CccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHH
Confidence            345688999999999887541    2222     1100001110 00000011223   246777899999999999999


Q ss_pred             CCCCCeeeEEecCC
Q 026789          114 CLGGQKLAINVSAR  127 (233)
Q Consensus       114 C~~Gmk~~I~V~~~  127 (233)
                      -..||...|.|...
T Consensus       132 ~~~Gl~G~liV~~~  145 (566)
T PLN02604        132 REAGLYGSIRVSLP  145 (566)
T ss_pred             HhCCCeEEEEEEec
Confidence            99999999998754

>PLN02354 copper ion binding / oxidoreductase

Probab=88.06  E-value=6.6  Score=38.86  Aligned_cols=76  Identities=20%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             CeeeeeCCEEEEEecCC--------CceEEEEcCCCCC-----cCCCCCCCCcCCCCCceEEe-ccCCCeeEecCCCCCC
Q 026789           49 NQTFTVGDTLVFNFAAG--------NHDVTRVTQSSFN-----ACNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHC  114 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~--------~H~V~~V~~~~y~-----~C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~hC  114 (233)
                      .++++.||+|+.+..+.        -|.+.|......|     .|    +|.-..+=..+|++ +..|++||-+-...|-
T Consensus        59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~  134 (552)
T PLN02354         59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHR  134 (552)
T ss_pred             cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCcccee
Confidence            46789999999987653        2555443111112     23    22221222356776 4789999999888888


Q ss_pred             CCCCeeeEEecCCC
Q 026789          115 LGGQKLAINVSARG  128 (233)
Q Consensus       115 ~~Gmk~~I~V~~~~  128 (233)
                      ..||...|.|....
T Consensus       135 ~~Gl~G~lII~~~~  148 (552)
T PLN02354        135 AAGGFGGLRVNSRL  148 (552)
T ss_pred             cCCccceEEEcCCc
Confidence            88999999887543

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=87.98  E-value=4.5  Score=36.61  Aligned_cols=14  Identities=21%  Similarity=0.667  Sum_probs=7.9

Q ss_pred             CCCccCCCCCCcch
Q 026789          203 ALGWTVPPNASVGY  216 (233)
Q Consensus       203 ~~GW~~~~~~~~~Y  216 (233)
                      -.||.....+.-.|
T Consensus       124 P~GW~~Sda~~L~y  137 (297)
T PF07174_consen  124 PAGWVESDASHLDY  137 (297)
T ss_pred             cCCccccccceeec
Confidence            67888664333334

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=87.74  E-value=0.18  Score=39.58  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             cCeeeeeCCEEEEEecCC---CceEEEE----cCC-CCCc--CCCCCCCCcCCCCCceEEecc-CCCeeEecCCCCCCCC
Q 026789           48 ANQTFTVGDTLVFNFAAG---NHDVTRV----TQS-SFNA--CNTTSPLSRTTNSPASVTLTA-SGPHYFICSFPGHCLG  116 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~---~H~V~~V----~~~-~y~~--C~~~~~~~~~~~G~~~v~l~~-~G~~yFic~~~~hC~~  116 (233)
                      ..+.++.||.|.+++.+.   .++|--=    ... ..|.  .....++.-..+-...|+++. +|.+||-|-...|=..
T Consensus        26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~  105 (117)
T PF07732_consen   26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVM  105 (117)
T ss_dssp             EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred             CEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcC
Confidence            457899999999988753   2444321    111 0111  001111111111235778887 9999999999886558


Q ss_pred             CCeeeEEecC
Q 026789          117 GQKLAINVSA  126 (233)
Q Consensus       117 Gmk~~I~V~~  126 (233)
                      ||-..|.|..
T Consensus       106 GL~G~~iV~~  115 (117)
T PF07732_consen  106 GLYGAIIVEP  115 (117)
T ss_dssp             TEEEEEEEE-
T ss_pred             cCEEEEEEcC
Confidence            9998888864

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=87.62  E-value=1.5  Score=44.01  Aligned_cols=67  Identities=13%  Similarity=0.301  Sum_probs=42.9

Q ss_pred             cCeeeeeCCEEEEEecCC------CceEEEEcCCCCCcCCCCCCCC-cCCCC---CceEEeccCCCeeEecCCCCCCCC-
Q 026789           48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLS-RTTNS---PASVTLTASGPHYFICSFPGHCLG-  116 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~------~H~V~~V~~~~y~~C~~~~~~~-~~~~G---~~~v~l~~~G~~yFic~~~~hC~~-  116 (233)
                      +..++++||.+.|...+-      .|....   ..|.       +. ....|   ...|+.+++|.|||+|+.  .|.. 
T Consensus       555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n-------I~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~  622 (635)
T PRK02888        555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG-------VNMEVAPQATASVTFTADKPGVYWYYCTW--FCHAL  622 (635)
T ss_pred             ceEEecCCCEEEEEEEeCCcccccccceee---cccC-------ccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccC
Confidence            457899999999999762      233332   1111       11 11222   245667899999999995  4654 


Q ss_pred             --CCeeeEEecC
Q 026789          117 --GQKLAINVSA  126 (233)
Q Consensus       117 --Gmk~~I~V~~  126 (233)
                        +|+..|.|..
T Consensus       623 H~~M~G~~iVep  634 (635)
T PRK02888        623 HMEMRGRMLVEP  634 (635)
T ss_pred             cccceEEEEEEe
Confidence              6888888753

>PLN02168 copper ion binding / pectinesterase

Probab=84.09  E-value=12  Score=37.13  Aligned_cols=80  Identities=16%  Similarity=0.093  Sum_probs=49.8

Q ss_pred             CeeeeeCCEEEEEecCCC--------ceEEEEcCCCCCc-CCCCCCCCcCCCCCceEEec-cCCCeeEecCCCCCCCCCC
Q 026789           49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTLT-ASGPHYFICSFPGHCLGGQ  118 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~~--------H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~l~-~~G~~yFic~~~~hC~~Gm  118 (233)
                      .++++.||.|+.+..+.-        |.+.+......|. ....-+|.-..+=..+|++. ..|++||-|-...|-..|+
T Consensus        58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL  137 (545)
T PLN02168         58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG  137 (545)
T ss_pred             cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence            578999999999887641        5544432211121 00111232222223578874 7999999988777777899


Q ss_pred             eeeEEecCCC
Q 026789          119 KLAINVSARG  128 (233)
Q Consensus       119 k~~I~V~~~~  128 (233)
                      ...|.|....
T Consensus       138 ~G~lII~~~~  147 (545)
T PLN02168        138 YGAIRIYNPE  147 (545)
T ss_pred             eeEEEEcCCc
Confidence            9999887644

>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen

Probab=84.07  E-value=0.76  Score=32.22  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=24.3

Q ss_pred             ChhHHHHHHHHHHHHhhhcccceEEEecCCC
Q 026789            1 MFNRFFLAAIAIAALVQSSTAQTRHVVGDAL   31 (233)
Q Consensus         1 m~~~~~~~~~~~~~l~~~~~a~~~~~VGg~~   31 (233)
                      |++|+++++|++++|+....++-+|.-|+.-
T Consensus         1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP   31 (65)
T PF10731_consen    1 MASKLIVIALLCVALVAIVQSAPQYAPGEEP   31 (65)
T ss_pred             CcchhhHHHHHHHHHHHHHhcCcccCCCCCC
Confidence            8999999888877777766666688778753

The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.

>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o

Probab=83.95  E-value=2.4  Score=33.39  Aligned_cols=66  Identities=15%  Similarity=0.235  Sum_probs=42.2

Q ss_pred             ccCeeeeeCCEEEEEecCC--CceEEEEcCCCCCcCCCCCCCCc-CCCCC---ceEEeccCCCeeEecCCCCCCCCC---
Q 026789           47 AANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSR-TTNSP---ASVTLTASGPHYFICSFPGHCLGG---  117 (233)
Q Consensus        47 a~~~~f~vGD~L~F~y~~~--~H~V~~V~~~~y~~C~~~~~~~~-~~~G~---~~v~l~~~G~~yFic~~~~hC~~G---  117 (233)
                      .+...+..|+.+.|+..+.  .|+...-   ++.       ++. ...|.   ..++.+++|.|++.|+  ..|..|   
T Consensus        45 ~~~l~lp~g~~v~~~ltS~DViHsf~ip---~~~-------~k~d~~PG~~~~~~~~~~~~G~y~~~C~--e~CG~gH~~  112 (120)
T PF00116_consen   45 DNELVLPAGQPVRFHLTSEDVIHSFWIP---ELG-------IKMDAIPGRTNSVTFTPDKPGTYYGQCA--EYCGAGHSF  112 (120)
T ss_dssp             SSEEEEETTSEEEEEEEESSS-EEEEET---TCT-------EEEEEBTTCEEEEEEEESSSEEEEEEE---SSSSTTGGG
T ss_pred             cceecccccceEeEEEEcCCcccccccc---ccC-------cccccccccceeeeeeeccCCcEEEcCc--cccCcCcCC
Confidence            3456778999999988753  3666541   111       111 12332   4677789999999999  689887   


Q ss_pred             CeeeEEe
Q 026789          118 QKLAINV  124 (233)
Q Consensus       118 mk~~I~V  124 (233)
                      |++.|.|
T Consensus       113 M~~~v~V  119 (120)
T PF00116_consen  113 MPGKVIV  119 (120)
T ss_dssp             -EEEEEE
T ss_pred             CeEEEEE
Confidence            8877776

; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....

>PLN02835 oxidoreductase

Probab=83.73  E-value=12  Score=36.99  Aligned_cols=79  Identities=19%  Similarity=0.186  Sum_probs=48.5

Q ss_pred             CeeeeeCCEEEEEecCC--------CceEEEEcCCCCCc-CCCCCCCCcCCCCCceEEe-ccCCCeeEecCCCCCCCCCC
Q 026789           49 NQTFTVGDTLVFNFAAG--------NHDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ  118 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~--------~H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~hC~~Gm  118 (233)
                      .++++.||+|+.+..+.        -|.+.+......|. ....-+|.-..+=..+|++ +..|+|||-|-...|-..|+
T Consensus        61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl  140 (539)
T PLN02835         61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG  140 (539)
T ss_pred             CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence            57899999999988654        24444432211221 0001122222222356666 57999999998888888899


Q ss_pred             eeeEEecCC
Q 026789          119 KLAINVSAR  127 (233)
Q Consensus       119 k~~I~V~~~  127 (233)
                      ...+.|...
T Consensus       141 ~G~lIV~~~  149 (539)
T PLN02835        141 FGAINVYER  149 (539)
T ss_pred             cceeEEeCC
Confidence            988888543

>TIGR02866 CoxB cytochrome c oxidase, subunit II

Probab=82.24  E-value=3.3  Score=35.34  Aligned_cols=85  Identities=13%  Similarity=0.112  Sum_probs=51.5

Q ss_pred             EEEecCCCCCccCCCCCCCcccc------ccCeeeeeCCEEEEEecCC--CceEEEEcCCCCCcCCCCCCCCcC-CCCC-
Q 026789           24 RHVVGDALGWIVPPNGPATYSNW------AANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRT-TNSP-   93 (233)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~Y~~W------a~~~~f~vGD~L~F~y~~~--~H~V~~V~~~~y~~C~~~~~~~~~-~~G~-   93 (233)
                      ..++|-.=.|.+      .|.+.      .+...+.+|+.+.|+..+.  .|+...          ..-.++.. -.|. 
T Consensus        93 i~v~~~qw~W~f------~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~DV~Hsf~i----------p~~~~k~da~PG~~  156 (201)
T TIGR02866        93 VKVEGHQWYWSF------DYPESRRGFTTVNELVVPAGTPVRLQVTSKDVIHSFWV----------PELGGKIDAIPGQY  156 (201)
T ss_pred             EEEEEEEeEEEE------EcCCcCCCccccCEEEEEcCCEEEEEEEeCchhhcccc----------cccCceEEecCCcE
Confidence            555666667876      34333      2345678999999987652  133322          11111111 1232 


Q ss_pred             --ceEEeccCCCeeEecCCCCCCCC---CCeeeEEecC
Q 026789           94 --ASVTLTASGPHYFICSFPGHCLG---GQKLAINVSA  126 (233)
Q Consensus        94 --~~v~l~~~G~~yFic~~~~hC~~---Gmk~~I~V~~  126 (233)
                        ..++.+++|.|++.|+.  .|..   .|++.|.|..
T Consensus       157 ~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~  192 (201)
T TIGR02866       157 NALWFNADEPGVYYGYCAE--LCGAGHSLMLFKVVVVE  192 (201)
T ss_pred             EEEEEEeCCCEEEEEEehh--hCCcCccCCeEEEEEEC
Confidence              35677899999999995  6655   4898888865

Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.

>TIGR01480 copper_res_A copper-resistance protein, CopA family

Probab=81.24  E-value=7.3  Score=38.89  Aligned_cols=79  Identities=9%  Similarity=0.060  Sum_probs=46.0

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEE-cC-----CCCCc-CCCC-CCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCe
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRV-TQ-----SSFNA-CNTT-SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQK  119 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V-~~-----~~y~~-C~~~-~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk  119 (233)
                      -.+.++.||.|+.++.+....-+.+ -.     ...|. ...+ .+|.-..+-.++|++...|+|||-|-...+=+.|+.
T Consensus        76 P~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~  155 (587)
T TIGR01480        76 PLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLY  155 (587)
T ss_pred             ceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccce
Confidence            3578899999999887642111111 00     00111 0000 011111111356778899999999988777778998


Q ss_pred             eeEEecC
Q 026789          120 LAINVSA  126 (233)
Q Consensus       120 ~~I~V~~  126 (233)
                      ..|.|..
T Consensus       156 G~lIV~~  162 (587)
T TIGR01480       156 GPLIIDP  162 (587)
T ss_pred             EEEEECC
Confidence            8888864

This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.

>PRK09723 putative fimbrial-like adhesin protein; Provisional

Probab=81.09  E-value=17  Score=34.92  Aligned_cols=11  Identities=27%  Similarity=0.546  Sum_probs=7.5

Q ss_pred             ceEEEecCCCC
Q 026789           22 QTRHVVGDALG   32 (233)
Q Consensus        22 ~~~~~VGg~~G   32 (233)
                      ...++||+..|
T Consensus        27 ~~~~~vg~~~~   37 (421)
T PRK09723         27 NVSYIVGNYYG   37 (421)
T ss_pred             ceEEEEccccc
Confidence            45788998543

>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II)

Probab=81.09  E-value=1.3  Score=25.68  Aligned_cols=18  Identities=17%  Similarity=0.403  Sum_probs=11.6

Q ss_pred             ChhHHHHHHHHHHHHhhh
Q 026789            1 MFNRFFLAAIAIAALVQS   18 (233)
Q Consensus         1 m~~~~~~~~~~~~~l~~~   18 (233)
                      |.||+++.++++.+|..+
T Consensus         6 mmKkil~~l~a~~~LagC   23 (25)
T PF08139_consen    6 MMKKILFPLLALFMLAGC   23 (25)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            578888776665555443

The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].

>TIGR03388 ascorbase L-ascorbate oxidase, plant type

Probab=80.46  E-value=3.3  Score=40.66  Aligned_cols=81  Identities=10%  Similarity=0.099  Sum_probs=49.8

Q ss_pred             cCeeeeeCCEEEEEecCCC----ceEEE----EcCCCC-Cc--CCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCC
Q 026789           48 ANQTFTVGDTLVFNFAAGN----HDVTR----VTQSSF-NA--CNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG  116 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~----H~V~~----V~~~~y-~~--C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~  116 (233)
                      ..++++.||.|++++.+..    +++.-    +....| |.  ....-++.-..+-..+|+++..|++||-|-...|-..
T Consensus        32 P~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~  111 (541)
T TIGR03388        32 PTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSA  111 (541)
T ss_pred             CeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhc
Confidence            4578999999999887642    22210    111111 11  0000111111111356778899999999999999999


Q ss_pred             CCeeeEEecCCC
Q 026789          117 GQKLAINVSARG  128 (233)
Q Consensus       117 Gmk~~I~V~~~~  128 (233)
                      ||...|.|....
T Consensus       112 Gl~G~liV~~~~  123 (541)
T TIGR03388       112 GLYGSLIVDVPD  123 (541)
T ss_pred             cceEEEEEecCC
Confidence            999999997653

Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
1x9r_A	116	Umecyanin From Horse Raddish- Crystal Structure Of		3e-21
1jer_A	138	Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138		2e-19
1ws7_A	109	Crystal Structure Of Mavicyanin From Cucurbita Pepo		1e-18
2cbp_A	96	Cucumber Basic Protein, A Blue Copper Protein Lengt		6e-12
1f56_A	91	Spinach Plantacyanin Length = 91		7e-12

>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 27  VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
           VG  + W  P + P  Y  WA  +TF VGD L F+FAAG HDV  VT+ +F+ C   +P+
Sbjct: 6   VGGDMEWKRPSD-PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 64
Query: 87  SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           S  T  P  + L  +GP Y+IC+   HC  GQKL+INV
Sbjct: 65  SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102

>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 66/106 (62%), Gaps = 7/106 (6%)
Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNAC- 80
           T H+VGD  GW VP + P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+AC 
Sbjct: 4   TVHIVGDNTGWSVP-SSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62
Query: 81  --NTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
             N+ + + RT  SP    L   G HYF+C+   HC  GQKL+INV
Sbjct: 63  FVNSDNDVERT--SPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106

>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
           T H VGD+ GW      P  Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN+
Sbjct: 3   TVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60
Query: 83  TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           +SP +  T+   S+ L   G  YF+C  PGHC  GQK+ I V
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102

>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 25  HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
           +VVG + GW           +W   + F  GD L+FN+    H+V  V Q  F+ CNT +
Sbjct: 3   YVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 85  PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123
                T+    + L   G  YFIC+FPGHC  G K+A+N
Sbjct: 57  GAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94

>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 45  NWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPH 104
           N A  ++F  GD LVF +  G H+V  V    + +C+        ++    + LT  G +
Sbjct: 12  NGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQN 70
Query: 105 YFICSFPGHCLGGQKLAIN 123
           YFICSFPGHC GG K+AIN
Sbjct: 71  YFICSFPGHCGGGMKIAIN 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	2e-40
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	1e-06
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	2e-40
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	1e-05
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	5e-39
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	2e-38
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	4e-07
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	5e-34
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	8e-04
1eys_C	382	Photosynthetic reaction center; membrane protein c	2e-06
1eys_C	382	Photosynthetic reaction center; membrane protein c	7e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	9e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	1e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	4e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	7e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	3e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	8e-04

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109

 Score =  133 bits (337), Expect = 2e-40
 Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 3/110 (2%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
           T H VGD+ GW         Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN+
Sbjct: 3   TVHKVGDSTGWTTLVP--YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 83  TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPA 132
           +SP +  T+   S+ L   G  YF+C  PGHC  GQK+ I V   GSS A
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDP-GSSSA 109

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILG 232
             H VG + GWT        Y  WA +N F VGD L 
Sbjct: 3   TVHKVGDSTGWTTLVPYD--YAKWASSNKFHVGDSLL 37

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116

 Score =  133 bits (336), Expect = 2e-40
 Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 2/114 (1%)

Query: 25  HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
           + VG  + W  P + P  Y  WA  +TF VGD L F+FAAG HDV  VT+ +F+ C   +
Sbjct: 4   YDVGGDMEWKRPSD-PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKEN 62

Query: 85  PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV-SARGSSPAPQPSS 137
           P+S  T  P  + L  +GP Y+IC+   HC  GQKL+INV  A G+     P +
Sbjct: 63  PISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGATPGA 116

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 198 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
           + VGG + W  P +    Y  WA    F VGD L
Sbjct: 4   YDVGGDMEWKRPSDPKF-YITWATGKTFRVGDEL 36

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91

 Score =  129 bits (326), Expect = 5e-39
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 31  LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTT 90
           +GW       +   N A  ++F  GD LVF +  G H+V  V    + +C+        +
Sbjct: 5   IGW-------SFNVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57

Query: 91  NSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           +    + LT  G +YFICSFPGHC GG K+AIN 
Sbjct: 58  SGQDRIKLTR-GQNYFICSFPGHCGGGMKIAINA 90

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96

 Score =  128 bits (322), Expect = 2e-38
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 25  HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
           +VVG + GW           +W   + F  GD L+FN+    H+V  V Q  F+ CNT +
Sbjct: 3   YVVGGSGGWTFN------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56

Query: 85  PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
                T+    + L   G  YFIC+FPGHC  G K+A+N 
Sbjct: 57  GAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVNA 95

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
           A +VVGG+ GWT         ++W +   F  GDIL
Sbjct: 1   AVYVVGGSGGWTFN------TESWPKGKRFRAGDIL 30

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score =  118 bits (296), Expect = 5e-34
 Identities = 56/134 (41%), Positives = 77/134 (57%), Gaps = 3/134 (2%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACN 81
           T H+VGD  GW VP + P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+ACN
Sbjct: 4   TVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62

Query: 82  TTSPLSRTTNSPASV-TLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAP 140
             +  +    +   +  L   G HYF+C+   HC  GQKL+INV A  ++ +  P S +P
Sbjct: 63  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPPPSSSP 122

Query: 141 QPSGSTPSPVPAPA 154
             S   P  +P P+
Sbjct: 123 PSSVMPPPVMPPPS 136

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
             H+VG   GW+VP + +  Y  WA    F VGD L
Sbjct: 4   TVHIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSL 38

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 15/66 (22%), Positives = 18/66 (27%)

Query: 132 APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 191
               +  A   S       PA A    P       PA    PA A         +  PAP
Sbjct: 310 KTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAP 369

Query: 192 TRQPAT 197
             + A 
Sbjct: 370 VEEVAP 375

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 45.3 bits (106), Expect = 7e-06
 Identities = 14/74 (18%), Positives = 20/74 (27%)

Query: 121 AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 180
            +  +A      P  +  +     +     P       PA    P  A       A +  
Sbjct: 307 GLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVE 366

Query: 181 PTPRSAPTPAPTRQ 194
           P P     PAP  Q
Sbjct: 367 PAPVEEVAPAPAAQ 380

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 14/102 (13%), Positives = 22/102 (21%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
                       P P  S  SP   P      A   +         AP+   +       
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79

Query: 188 TPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGD 229
           + +   +  T          V   +    +  A      V D
Sbjct: 80  SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVID 121

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
            R   P P PS+ +P  +    +   A   +     A    P+   +       + +   
Sbjct: 27  QRPQPPPPPPSAASP-GATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAV 85

Query: 186 APTPAPTRQPATHVVGGALG 205
             T A      +  VGG  G
Sbjct: 86  KQTTAAAAATFSEQVGGGSG 105

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 3/80 (3%)

Query: 128 GSSPA--PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 185
           GSS       S   P+ S     P  +     +   A    P T P PAP   P P   +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVI-PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 186 APTPAPTRQPATHVVGGALG 205
            P           ++ G  G
Sbjct: 61  PPDTVTGDSVLQRILRGPTG 80

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 136 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP 195
           SS       S   P  +    P+ +   A          P + P P P   P PA    P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN-P 61

Query: 196 ATHVVGGALGWTVPP 210
              V G ++   +  
Sbjct: 62  PDTVTGDSVLQRILR 76

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 15/71 (21%), Positives = 22/71 (30%)

Query: 127 RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 186
             + P P P  P    +G+ P  V   +        P     T+  PA      P P + 
Sbjct: 42  PVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAP 101

Query: 187 PTPAPTRQPAT 197
            +  P    A 
Sbjct: 102 ASAPPAAGRAV 112

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 6e-05
 Identities = 12/71 (16%), Positives = 15/71 (21%), Gaps = 1/71 (1%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
           S+           P        PS     A +   A    P     P P P  AP     
Sbjct: 3   SSHHHHHHSSGLVP-RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 185 SAPTPAPTRQP 195
                  +   
Sbjct: 62  PDTVTGDSVLQ 72

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 6e-05
 Identities = 17/81 (20%), Positives = 23/81 (28%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           S +   ++     +   P  VP PA  P PAPA    P T    +        P    T 
Sbjct: 25  SASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTT 84

Query: 190 APTRQPATHVVGGALGWTVPP 210
           +           G       P
Sbjct: 85  SLAPAVRYGRQPGPEAPASAP 105

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.1 bits (98), Expect = 7e-05
 Identities = 15/73 (20%), Positives = 19/73 (26%), Gaps = 3/73 (4%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA--PASAPTPT 182
           S+           P+     S  S   A    P   P PAP P   P     P +    +
Sbjct: 11  SSGLVPRGSHMVIPSASV-TSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDS 69

Query: 183 PRSAPTPAPTRQP 195
                   PT   
Sbjct: 70  VLQRILRGPTGPG 82

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 1/70 (1%)

Query: 144 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGA 203
           GS+       +            P+ + T A +            P P   P      G 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVI-PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 204 LGWTVPPNAS 213
              TV  ++ 
Sbjct: 61  PPDTVTGDSV 70

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 16/95 (16%), Positives = 21/95 (22%), Gaps = 1/95 (1%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAP-APEPATTPTPAPASAPTPTPRSA 186
              P      PAP P  +  +  P    T           P    T + A A     +  
Sbjct: 38  ALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPG 97

Query: 187 PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWAR 221
           P    +  PA       L     P           
Sbjct: 98  PEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVS 132

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 9/90 (10%)

Query: 126 ARGSSPAPQPSSPAPQPSGSTPSPV--PAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
           A    PAP   +P    +G +        P    T + APA      P P   ++  P  
Sbjct: 49  APPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAA 108

Query: 184 RSA-------PTPAPTRQPATHVVGGALGW 206
             A       P P P       V      W
Sbjct: 109 GRAVPGLYHHPVPEPDPVRVEEVSRRIKRW 138

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 17/81 (20%), Positives = 22/81 (27%)

Query: 139 APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATH 198
           AP   G+        A    PA    P     PT  P       P++   P P    AT 
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63

Query: 199 VVGGALGWTVPPNASVGYQNW 219
             G A       +      + 
Sbjct: 64  AAGHATLREHLRDIKAENTDA 84

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 135 PSSPA-PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 193
           P+SP  P  + +T +    PA    PA   AP     P           PR A   A   
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64

Query: 194 QPATHV 199
                +
Sbjct: 65  AGHATL 70

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 10/71 (14%), Positives = 18/71 (25%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
            +P    ++ A     +TP+P    A           +    PTP   +    T  +   
Sbjct: 9   GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHA 68

Query: 189 PAPTRQPATHV 199
                      
Sbjct: 69  TLREHLRDIKA 79

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 14/81 (17%), Positives = 20/81 (24%)

Query: 131 PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
            +P     A     +   P          AP   P+P     P   + P P   +A   A
Sbjct: 6   TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65

Query: 191 PTRQPATHVVGGALGWTVPPN 211
                  H+       T    
Sbjct: 66  GHATLREHLRDIKAENTDANF 86

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 123 NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA-PAPAPEPATTPTPAPASAPTP 181
            V+A   +    P++PAP   G+ P+  P P +   P  P P        T A   A   
Sbjct: 12  GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLR 71

Query: 182 TPRSAPTPAPTRQP 195
                     T   
Sbjct: 72  EHLRDIKAENTDAN 85

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 13/78 (16%), Positives = 20/78 (25%)

Query: 153 PARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNA 212
           PA   +P               PA+   P   +APT  P  +                NA
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 213 SVGYQNWARNNNFSVGDI 230
           +V   +     +      
Sbjct: 62  TVAAGHATLREHLRDIKA 79

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 11/88 (12%), Positives = 16/88 (18%)

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
               Q    A           P        +      P     P+       TP      
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 190 APTRQPATHVVGGALGWTVPPNASVGYQ 217
               Q  T +    L      + +   Q
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQ 98

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 11/90 (12%), Positives = 21/90 (23%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
            ++P  QP+   P    +           P     P+       TPA         ++  
Sbjct: 19  NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78

Query: 188 TPAPTRQPATHVVGGALGWTVPPNASVGYQ 217
           +          +V             +G  
Sbjct: 79  SMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 1/94 (1%)

Query: 124 VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 183
           V  +      Q ++P  QP+   P   PA A          P     P+       TP  
Sbjct: 8   VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPP-QGAVPSMGQQQFLTPAQ 66

Query: 184 RSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQ 217
                       + + +       V PNA +  Q
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 12/102 (11%), Positives = 17/102 (16%)

Query: 128 GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 187
                 Q     P           A            P         P            
Sbjct: 52  AVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQ 111

Query: 188 TPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGD 229
              P   PA      A+G  + P   +   +        + D
Sbjct: 112 QQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITD 153

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 10/127 (7%)

Query: 70  TRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGS 129
           T+V  S  +     S  + + +      + + G  +   S     + G            
Sbjct: 18  TQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING----------MG 67

Query: 130 SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
            P    SSP    S S P+       T +P  +    P ++                P  
Sbjct: 68  PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127

Query: 190 APTRQPA 196
                 +
Sbjct: 128 PSGNMAS 134

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 18/50 (36%)

Query: 140 PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 189
           P PS       PA    P P PA +        PAP +A  P   +A   
Sbjct: 92  PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 16/63 (25%), Positives = 20/63 (31%)

Query: 138 PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 197
           P P    +   P    A  PTPA +     A  P P  A+AP                  
Sbjct: 92  PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLLL 151

Query: 198 HVV 200
           HV+
Sbjct: 152 HVL 154

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 179
           S  A +      +    TP+          PAP  A  PA       A  P
Sbjct: 95  SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPA-AAAAEIADEP 144

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 92   SPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVP 151
            SP S + + + P Y   S             + S   +SP+  P+SP+  P+  + SP  
Sbjct: 1557 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1616

Query: 152  A------PARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
                   P+ +PT        P+ +PT  P+ +PT    S  +PA
Sbjct: 1617 PSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPA 1660

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 17/115 (14%)

Query: 84   SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPS 143
            SP S  + SP S + + + P Y   S               S   +SP+  P+SP+  P+
Sbjct: 1599 SPTS-PSYSPTSPSYSPTSPSYSPTS--------------PSYSPTSPSYSPTSPSYSPT 1643

Query: 144  GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATH 198
              + SP  +P+ +PT        P+ +PT +P+ +PT    S  +P+ +     +
Sbjct: 1644 SPSYSPT-SPSYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPNY 1696

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 83   TSPLSRTTN---SPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPA 139
            TSP    T+   SP S + + + P Y   S             + S   +SP+  P+SP+
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681

Query: 140  PQPSGSTPSPVPAPARTPT-PAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 193
              P+  + SP  +P  +PT P+ +P   P  +P  +PA +P    +       +R
Sbjct: 1682 YSPTSPSYSP-TSPNYSPTSPSYSPTS-PGYSPG-SPAYSPKQDEQKHNENENSR 1733

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 6/75 (8%), Positives = 12/75 (16%)

Query: 129 SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 188
            S        +      +  P       P        +        PA            
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 189 PAPTRQPATHVVGGA 203
            +        +  G+
Sbjct: 62  GSAGTSVTLQLDDGS 76

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 29/118 (24%)

Query: 81   NTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAP 140
            + TSP    + SP S + + + P Y                       +SP+  P+SP+ 
Sbjct: 1649 SPTSP----SYSPTSPSYSPTSPSY---------------------SPTSPSYSPTSPSY 1683

Query: 141  QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATH 198
             P+  + SP        +P+ +P   P+ +PT +P+ +PT +P  +PT +P+  P + 
Sbjct: 1684 SPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPT-SPSYSPT-SPSYSPT-SPSYSPTSP 1737

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 83   TSPLSRTT---NSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPA 139
            TSP    T    SP S + + + P Y   S P +       +       +SP+  P+SP+
Sbjct: 1602 TSPSYSATSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSP------TSPSYSPTSPS 1654

Query: 140  PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 190
              P+  + SP  +P+ +PT        P+ +PT +P+ +PT    S  +P+
Sbjct: 1655 YSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPS 1703

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 13/73 (17%), Positives = 22/73 (30%)

Query: 125 SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 184
            A  ++     S      S  T +   +    P  AP      + T +  P S P     
Sbjct: 245 RAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEY 304

Query: 185 SAPTPAPTRQPAT 197
            A   +  + P +
Sbjct: 305 HAGMKSLNKAPYS 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	100.0
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	100.0
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	100.0
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	100.0
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	99.97
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	99.2
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	99.14
2cal_A	154	Rusticyanin; iron respiratory electron transport c	99.01
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	99.0
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	98.98
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	98.93
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	98.92
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	98.91
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	98.91
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	98.9
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	98.89
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	98.87
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	98.85
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	98.85
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	98.8
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	98.77
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	98.71
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	98.69
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	98.66
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	98.33
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	98.26
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	98.26
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	98.25
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	98.24
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	98.18
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	98.05
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	98.04
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	98.01
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	98.01
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	97.97
1iko_P	178	Ephrin-B2; greek KEY, glycosylation, signaling pro	97.48
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	96.81
2x11_B	177	Ephrin-A5; receptor-signaling protein complex, dev	96.73
3fsa_A	125	Azurin; copper, cupredoxin fold, metal-binding, pr	96.59
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	96.57
3czu_B	182	Ephrin-A1; ATP-binding, kinase, nucleotide-binding	96.37
1shx_A	138	Ephrin-A5; ephrin signaling, hormone-growth factor	95.65
3d12_B	141	Ephrin-B3; beta propeller, protein-receptor comple	95.56
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	94.93
3s8f_B	168	Cytochrome C oxidase subunit 2; complex IV, respir	94.9
2vsm_B	140	Ephrin-B2; developmental protein, henipavirus, neu	94.88
2wo3_B	157	Ephrin-A2; transferase-signaling protein complex,	93.76
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.84
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	92.62
3hei_B	132	Ephrin-A1; EPH receptor tyrosine kinase, cell memb	89.46
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	85.97
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	85.78
1kbv_A	327	ANIA, major outer membrane protein PAN 1; ANIA[NO2	81.51
3ghp_A	227	Cellulosomal scaffoldin adaptor protein B; linker	80.4

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=1.4e-40  Score=268.45  Aligned_cols=112  Identities=43%  Similarity=0.790  Sum_probs=100.4

Q ss_pred             cceEEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEE-cCCCCCcCCCCCCCCcCCCCCceEEe-
Q 026789           21 AQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACNTTSPLSRTTNSPASVTL-   98 (233)
Q Consensus        21 a~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~l-   98 (233)
                      ++++|+|||+.||++.++ ..+|++||++++|+|||+|+|+|..++|+|+|| ++++|+.|+.++++..+++|+++|+| 
T Consensus         2 ~a~~~~VGg~~GW~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~   80 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL   80 (138)
T ss_dssp             CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred             CceEEEECCcCcCcCCCC-ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEec
Confidence            356899999999999643 478999999999999999999999999999999 99999999999999999999999999 


Q ss_pred             ccCCCeeEecCCCCCCCCCCeeeEEecCCCCCCCC
Q 026789           99 TASGPHYFICSFPGHCLGGQKLAINVSARGSSPAP  133 (233)
Q Consensus        99 ~~~G~~yFic~~~~hC~~Gmk~~I~V~~~~a~P~P  133 (233)
                      ++.|.+||||++++||++||||+|+|....+.+++
T Consensus        81 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~  115 (138)
T 1jer_A           81 DELGMHYFVCTVGTHCSNGQKLSINVVAANATVSM  115 (138)
T ss_dssp             CSSEEEEEECCSTTTGGGTCEEEEEEECCC-----
T ss_pred             cCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCC
Confidence            99999999999999999999999999876554333

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A

Probab=100.00  E-value=9.1e-38  Score=245.33  Aligned_cols=105  Identities=44%  Similarity=0.858  Sum_probs=96.7

Q ss_pred             eEEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCC
Q 026789           23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASG  102 (233)
Q Consensus        23 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G  102 (233)
                      ++|+|||+.||+++. ...+|+.||++++|+|||+|+|+|.+++|+|+||++++|+.|+.++++..+++|++.|+|+++|
T Consensus         2 ~~~~VG~~~GW~~~~-~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G   80 (116)
T 1x9u_A            2 EDYDVGGDMEWKRPS-DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTG   80 (116)
T ss_dssp             CEEETTGGGCSSCCS-STTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCE
T ss_pred             eEEEECCcCcCcCCC-CCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCC
Confidence            468999999999863 3578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEecCCCCCCCCCCeeeE-EecCCC
Q 026789          103 PHYFICSFPGHCLGGQKLAI-NVSARG  128 (233)
Q Consensus       103 ~~yFic~~~~hC~~Gmk~~I-~V~~~~  128 (233)
                      .+||||++++||++||||+| +|..+.
T Consensus        81 ~~yFic~~~~HC~~Gmkl~In~V~~~~  107 (116)
T 1x9u_A           81 PQYYICTVGDHCRVGQKLSINVVGAGG  107 (116)
T ss_dssp             EEEEECCSTTTTTTTCEEEEEEECC--
T ss_pred             CEEEECCCCCccccCCEEEEEEECCCC
Confidence            99999999999999999999 776543

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A

Probab=100.00  E-value=1.2e-37  Score=242.09  Aligned_cols=105  Identities=41%  Similarity=0.829  Sum_probs=97.4

Q ss_pred             ceEEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccC
Q 026789           22 QTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTAS  101 (233)
Q Consensus        22 ~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~  101 (233)
                      +++|+|||+.||++++  ..+|++||++++|+|||+|+|+|.++.|+|+||++++|+.|+.++++..+++|+++|+|+++
T Consensus         2 a~~~~VG~~~GW~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~   79 (109)
T 1ws8_A            2 ATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP   79 (109)
T ss_dssp             CCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred             CcEEEeCCCCCccCCC--CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCC
Confidence            4579999999999853  46899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEecCCCCCCCCCCeeeEEecCCC
Q 026789          102 GPHYFICSFPGHCLGGQKLAINVSARG  128 (233)
Q Consensus       102 G~~yFic~~~~hC~~Gmk~~I~V~~~~  128 (233)
                      |.+||||++++||++||||+|+|....
T Consensus        80 G~~yFic~~~gHC~~GmKl~I~V~~~~  106 (109)
T 1ws8_A           80 GTFYFLCGIPGHCQLGQKVEIKVDPGS  106 (109)
T ss_dssp             EEEEEECCSTTTTTTTCEEEEEECC--
T ss_pred             cCEEEECCCCCcccCCCEEEEEEcCCC
Confidence            999999999999999999999997654

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=7.4e-36  Score=227.20  Aligned_cols=95  Identities=38%  Similarity=0.777  Sum_probs=91.1

Q ss_pred             EEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCC
Q 026789           24 RHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGP  103 (233)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~  103 (233)
                      +|+|||+.||++      +|++||++++|+|||+|+|+|.+++|+|+||++++|+.|+.++++..+++|++.|+| ++|+
T Consensus         2 ~~~VG~~~GW~~------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~   74 (96)
T 2cbp_A            2 VYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQ   74 (96)
T ss_dssp             EEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSEE
T ss_pred             EEEECCcCCCcc------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCCC
Confidence            689999999997      599999999999999999999999999999999999999999999889999999999 8999


Q ss_pred             eeEecCCCCCCCCCCeeeEEec
Q 026789          104 HYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus       104 ~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +||||++++||++||||+|+|.
T Consensus        75 ~yFic~~~~HC~~Gmkl~I~Vl   96 (96)
T 2cbp_A           75 SYFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEEECCSTTTGGGTCEEEEEEC
T ss_pred             EEEEcCCCCccccCCEEEEEEC
Confidence            9999999999999999999984

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1

Probab=99.97  E-value=7.8e-32  Score=203.13  Aligned_cols=90  Identities=38%  Similarity=0.762  Sum_probs=84.7

Q ss_pred             EEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCC
Q 026789           24 RHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGP  103 (233)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~  103 (233)
                      +|+|    ||+++       ++||++++|+|||+|+|+|.+++|+|+||++++|+.|+.++++..+++|++.|+|+ +|+
T Consensus         2 ~y~V----gW~~~-------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~   69 (91)
T 1f56_A            2 VYNI----GWSFN-------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQ   69 (91)
T ss_dssp             EEEE----ECSSS-------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEE
T ss_pred             EEEE----eCCCC-------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCC
Confidence            5778    89972       89999999999999999999999999999999999999999999899999999996 899


Q ss_pred             eeEecCCCCCCCCCCeeeEEec
Q 026789          104 HYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus       104 ~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +||||++++||++||||+|+|.
T Consensus        70 ~yFic~~~~HC~~Gmkl~I~v~   91 (91)
T 1f56_A           70 NYFICSFPGHCGGGMKIAINAK   91 (91)
T ss_dssp             EEEECCSTTTTTTTCEEEEEEC
T ss_pred             eEEEcCCCCccccCCEEEEEEC
Confidence            9999999999999999999984

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=99.20  E-value=3.6e-11  Score=95.42  Aligned_cols=94  Identities=21%  Similarity=0.355  Sum_probs=63.6

Q ss_pred             ceEEEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecC-----CCceEEEEcCC-CCCcC--------------
Q 026789           22 QTRHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-----GNHDVTRVTQS-SFNAC--------------   80 (233)
Q Consensus        22 ~~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~-----~~H~V~~V~~~-~y~~C--------------   80 (233)
                      ..++.|+-. ++|.+.+          +.++++.||+|.|.|.+     ..|+++..... ++..+              
T Consensus        16 ~~~v~V~~~~~~~~F~P----------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (140)
T 1qhq_A           16 AQTVEVRAAPDALAFAQ----------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFV   85 (140)
T ss_dssp             SEEEEEEBCSSSSSBSC----------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTC
T ss_pred             CEEEEEEEeCCCceEeC----------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhccccccc
Confidence            345667654 3577743          57899999999998876     46999887422 11110              


Q ss_pred             ---CCCC------CCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           81 ---NTTS------PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        81 ---~~~~------~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                         +..+      .+....++...|+++++|.|||+|++.+||+.|||+.|.|.
T Consensus        86 ~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~  139 (140)
T 1qhq_A           86 PPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT  139 (140)
T ss_dssp             CCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             CccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence               0000      01111223356777899999999999999999999999985

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=99.14  E-value=5.2e-11  Score=86.96  Aligned_cols=86  Identities=19%  Similarity=0.211  Sum_probs=60.9

Q ss_pred             EEEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecC-CCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccC
Q 026789           24 RHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTAS  101 (233)
Q Consensus        24 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~  101 (233)
                      ++.+|++ .+|.+.+          +.+++++||+|.|.+.. ..|+|+......+. .   ............++++++
T Consensus         4 ~v~~~~~~~~~~f~P----------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-~---~~~~~~~g~~~~~~f~~~   69 (91)
T 1bxv_A            4 AIKMGADNGMLAFEP----------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-H---KDLAFSPGETFEATFSEP   69 (91)
T ss_dssp             EEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-E---EEEECSTTCEEEEECCSC
T ss_pred             EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-c---ccceeCCCCEEEEEeCCC
Confidence            4556754 4566643          46899999999999874 57999975432221 0   001112233578899999


Q ss_pred             CCeeEecCCCCCCCCCCeeeEEec
Q 026789          102 GPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus       102 G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      |.|+|+|.  .||..||+..|.|.
T Consensus        70 G~y~~~C~--~H~~~gM~g~i~V~   91 (91)
T 1bxv_A           70 GTYTYYCE--PHRGAGMVGKIVVQ   91 (91)
T ss_dssp             EEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEEEEEeC--CCccCCCEEEEEEC
Confidence            99999999  89999999999883

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=99.01  E-value=2.8e-10  Score=92.50  Aligned_cols=77  Identities=17%  Similarity=0.320  Sum_probs=58.1

Q ss_pred             cCeeeeeCCEEEEEecCC----CceEEEEc-CCCCCcCCCCCCCC-------cCCCC---Cc--eEEeccCCCeeEecCC
Q 026789           48 ANQTFTVGDTLVFNFAAG----NHDVTRVT-QSSFNACNTTSPLS-------RTTNS---PA--SVTLTASGPHYFICSF  110 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~----~H~V~~V~-~~~y~~C~~~~~~~-------~~~~G---~~--~v~l~~~G~~yFic~~  110 (233)
                      ..+++++||+|+|++.+.    .|+++.++ ...|+.|.....+.       ....|   ..  +|++ ++|.|||+|++
T Consensus        61 p~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~  139 (154)
T 2cal_A           61 PTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQI  139 (154)
T ss_dssp             CEEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCS
T ss_pred             CEEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCC
Confidence            357899999999999763    59999984 44777786543321       11222   33  4567 99999999999


Q ss_pred             CCCCCCCCeeeEEec
Q 026789          111 PGHCLGGQKLAINVS  125 (233)
Q Consensus       111 ~~hC~~Gmk~~I~V~  125 (233)
                      .+||+.||+..|.|.
T Consensus       140 ~gH~~~GM~G~IiV~  154 (154)
T 2cal_A          140 PGMAATGMFGKIVVK  154 (154)
T ss_dssp             TTTGGGTCEEEEEEC
T ss_pred             CCHHHCCCEEEEEEC
Confidence            999999999999883

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=99.00  E-value=8.2e-10  Score=86.65  Aligned_cols=73  Identities=21%  Similarity=0.299  Sum_probs=54.8

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCC--CCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +.+++++||+|.|.+....|+|+...     .|...+.  ..........++++++|.|+|+|+  .||..||+..|.|.
T Consensus        21 ~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~   93 (123)
T 1pmy_A           21 ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVG   93 (123)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEc
Confidence            56899999999999987789998752     2222111  111122346899999999999999  59999999999997


Q ss_pred             CC
Q 026789          126 AR  127 (233)
Q Consensus       126 ~~  127 (233)
                      ..
T Consensus        94 ~~   95 (123)
T 1pmy_A           94 DK   95 (123)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=98.98  E-value=9.7e-10  Score=86.24  Aligned_cols=72  Identities=22%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCC--CCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS--PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~--~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +.+++++||+|.|.+....|+|+...     .|...+  ...........++++++|.|+|+|+  .||..||+..|.|.
T Consensus        21 ~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~   93 (123)
T 1paz_A           21 AYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT--PHYAMGMIALIAVG   93 (123)
T ss_dssp             SEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEEeC--CcccCCCEEEEEEc
Confidence            57899999999999987789998741     222111  1111122246889999999999998  69999999999997


Q ss_pred             C
Q 026789          126 A  126 (233)
Q Consensus       126 ~  126 (233)
                      .
T Consensus        94 ~   94 (123)
T 1paz_A           94 D   94 (123)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=98.93  E-value=3e-09  Score=79.10  Aligned_cols=89  Identities=22%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             EEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecCC-CceEEEEcCC---CCCcCCC---CCCCCcCCCCCceE
Q 026789           25 HVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQS---SFNACNT---TSPLSRTTNSPASV   96 (233)
Q Consensus        25 ~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~-~H~V~~V~~~---~y~~C~~---~~~~~~~~~G~~~v   96 (233)
                      +.+|++ .++.+.+          +.+++++||+|.|.+... .|+|+..+..   +.+.+..   ...+.........+
T Consensus         3 v~m~~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~   72 (99)
T 1plc_A            3 VLLGADDGSLAFVP----------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEV   72 (99)
T ss_dssp             EEESCTTCCSCEES----------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEE
T ss_pred             EEEecCCCcceEeC----------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEEE
Confidence            456654 3455533          568999999999988764 7999876431   1222211   11111222335688


Q ss_pred             EeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           97 TLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        97 ~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +++++|.|+|+|.  .||+.||+..|.|.
T Consensus        73 tf~~~G~y~~~C~--~H~~~gM~G~i~V~   99 (99)
T 1plc_A           73 ALSNKGEYSFYCS--PHQGAGMVGKVTVN   99 (99)
T ss_dssp             ECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             EECCCceEEEEcC--CCcccCCEEEEEEC
Confidence            9999999999999  89999999999883

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=98.92  E-value=4.1e-09  Score=83.02  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=56.2

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCC--CCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +.+++++||+|.|.+....|+|+..+.     +...+.  .....+....++++++|.|.|+|.  .||..||+..|.|.
T Consensus        22 ~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~--~H~~~GM~G~I~V~   94 (124)
T 3ef4_A           22 GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA--PHYGMGMVVLVQVG   94 (124)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC--CCCcCCCEEEEEEC
Confidence            578999999999999888899998522     222211  111223357899999999999998  89999999999997


Q ss_pred             CC
Q 026789          126 AR  127 (233)
Q Consensus       126 ~~  127 (233)
                      .+
T Consensus        95 ~p   96 (124)
T 3ef4_A           95 KP   96 (124)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=98.91  E-value=2e-09  Score=84.61  Aligned_cols=72  Identities=19%  Similarity=0.193  Sum_probs=55.6

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCC--CCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +.+++++||+|.|.+....|+|+..+.     |...+.  ..........++++++|.|+|+|.  .||..||+..|.|.
T Consensus        21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~   93 (123)
T 3erx_A           21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVG   93 (123)
T ss_dssp             SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence            578999999999999887899987422     222111  111123457899999999999999  89999999999998


Q ss_pred             C
Q 026789          126 A  126 (233)
Q Consensus       126 ~  126 (233)
                      .
T Consensus        94 ~   94 (123)
T 3erx_A           94 D   94 (123)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=98.91  E-value=5.2e-09  Score=78.52  Aligned_cols=91  Identities=23%  Similarity=0.208  Sum_probs=61.2

Q ss_pred             eEEEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecC-CCceEEEEcCCCCC-----cCCC-CCCCCcCCCCCc
Q 026789           23 TRHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFN-----ACNT-TSPLSRTTNSPA   94 (233)
Q Consensus        23 ~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~y~-----~C~~-~~~~~~~~~G~~   94 (233)
                      .++.||.+ .++.+.+          +.+++++||+|.|.+.. ..|+|+..+....+     .+.. .+..........
T Consensus         4 ~~V~~~~~~~~~~F~P----------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~   73 (106)
T 2gim_A            4 YTVKLGSDKGLLVFEP----------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQST   73 (106)
T ss_dssp             EEEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEE
T ss_pred             EEEEEEecCCcceEcC----------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEE
Confidence            35667653 4576643          56899999999998765 46999864321110     0000 011122223357


Q ss_pred             eEEe---ccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           95 SVTL---TASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        95 ~v~l---~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      .+++   +++|.|+|+|.  .||+.||+..|.|.
T Consensus        74 ~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  105 (106)
T 2gim_A           74 STTFPADAPAGEYTFYCE--PHRGAGMVGKITVA  105 (106)
T ss_dssp             EEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence            8888   89999999999  89999999999985

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=98.90  E-value=9.6e-09  Score=81.25  Aligned_cols=93  Identities=18%  Similarity=0.330  Sum_probs=62.7

Q ss_pred             ceEEEecC-CCCCccCCCCCCCccccccCeeeeeCCEEEEEecCC----CceEEEEcCC------------------CCC
Q 026789           22 QTRHVVGD-ALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG----NHDVTRVTQS------------------SFN   78 (233)
Q Consensus        22 ~~~~~VGg-~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~----~H~V~~V~~~------------------~y~   78 (233)
                      ..++.||. ..++.+.+          +.++++.||+|.|.|.+.    .|+++.....                  +|.
T Consensus        18 ~~~V~v~~~~~~~~F~p----------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~   87 (139)
T 2aan_A           18 PVTIEIGSKGEELAFDK----------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYL   87 (139)
T ss_dssp             CEEEEEEBCTTSSSBSC----------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTC
T ss_pred             CEEEEEEecCCccEEcC----------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccccc
Confidence            34566742 23566533          568899999999988653    6999887532                  455


Q ss_pred             cCCCCCCC---CcCCCC-CceEEe--ccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           79 ACNTTSPL---SRTTNS-PASVTL--TASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        79 ~C~~~~~~---~~~~~G-~~~v~l--~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      .|...+.+   .....| ...|++  +++|.|+|+|.+.+||+ ||+..|.|.
T Consensus        88 p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~  139 (139)
T 2aan_A           88 PADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN  139 (139)
T ss_dssp             CSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred             CcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence            55422211   112333 345555  48999999999999999 999999883

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=98.89  E-value=4.7e-09  Score=82.88  Aligned_cols=74  Identities=23%  Similarity=0.228  Sum_probs=56.3

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCC--CCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +..++++||+|.|.+....|+|+..+.     +.....  ..........++++++|.|+|+|.  .||..||+..|.|.
T Consensus        23 ~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~   95 (127)
T 3tu6_A           23 AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVVG   95 (127)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence            578999999999999877899987532     111111  111123357899999999999999  79999999999998


Q ss_pred             CCC
Q 026789          126 ARG  128 (233)
Q Consensus       126 ~~~  128 (233)
                      .+.
T Consensus        96 ~~~   98 (127)
T 3tu6_A           96 EPA   98 (127)
T ss_dssp             SCT
T ss_pred             cCC
Confidence            643

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=98.87  E-value=2.5e-09  Score=79.69  Aligned_cols=90  Identities=17%  Similarity=0.180  Sum_probs=60.4

Q ss_pred             EEEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecC-CCceEEEEcCC---CCCcCCCCCCCCcCCCC-CceEE
Q 026789           24 RHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQS---SFNACNTTSPLSRTTNS-PASVT   97 (233)
Q Consensus        24 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~-~~H~V~~V~~~---~y~~C~~~~~~~~~~~G-~~~v~   97 (233)
                      ++.+|++ .++.+.+          +.+++++||+|.|.+.. ..|+|+..+..   .++.+..+........| ...++
T Consensus         3 ~V~m~~~~~~~~F~P----------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~t   72 (98)
T 1iuz_A            3 IVKLGGDDGSLAFVP----------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRK   72 (98)
T ss_dssp             EEEESCTTSCCSEES----------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEE
T ss_pred             EEEEecCCCCcEEeC----------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEE
Confidence            3455543 4566644          57899999999998875 37999875321   22322111100112333 46889


Q ss_pred             eccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           98 LTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        98 l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ++++|.|+|+|..  ||+.||+..|.|.
T Consensus        73 f~~~G~y~y~C~~--H~~~gM~G~I~V~   98 (98)
T 1iuz_A           73 LSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             CCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             cCCCEEEEEEchh--hccCCCEEEEEEC
Confidence            9999999999995  9999999999883

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=98.85  E-value=9.5e-09  Score=75.96  Aligned_cols=89  Identities=26%  Similarity=0.309  Sum_probs=60.9

Q ss_pred             EEEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecC-CCceEEEEcCCC---CCcCCCCCCCCcCCCCCceEEe
Q 026789           24 RHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSS---FNACNTTSPLSRTTNSPASVTL   98 (233)
Q Consensus        24 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~---y~~C~~~~~~~~~~~G~~~v~l   98 (233)
                      ++.+|++ .++.+.+          +.+++++||+|.|.+.. ..|+|+..+...   .+.+.. +...........+++
T Consensus         4 ~V~~~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~tf   72 (97)
T 1b3i_A            4 QIKMGTDKYAPLYEP----------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSN-TKLAIAPGSFYSVTL   72 (97)
T ss_dssp             EEEEEETTTEEEEES----------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCB-CCCCCSCSCCEEEEC
T ss_pred             EEEEeccCCccEEeC----------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccc-cceecCCCCEEEEEe
Confidence            4556653 4455533          56899999999998765 369998764321   001111 112222334578899


Q ss_pred             ccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           99 TASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        99 ~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +++|.|+|+|.  .||+.||+..|.|.
T Consensus        73 ~~~G~y~y~C~--~H~~~gM~G~i~V~   97 (97)
T 1b3i_A           73 GTPGTYSFYCT--PHRGAGMVGTITVE   97 (97)
T ss_dssp             CSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred             CCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence            99999999999  99999999999883

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A

Probab=98.85  E-value=5.3e-10  Score=86.27  Aligned_cols=36  Identities=42%  Similarity=0.771  Sum_probs=32.5

Q ss_pred             CceeeecCCCCccCCCCCCcchhccccCCcccCCceec
Q 026789          195 PATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILG  232 (233)
Q Consensus       195 ~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~L~  232 (233)
                      +++|+|||+.||+++.  ..+|++||++|+|+|||+|+
T Consensus         2 a~~~~VG~~~GW~~~~--~~~Y~~Wa~~~~F~vGD~Lv   37 (109)
T 1ws8_A            2 ATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLL   37 (109)
T ss_dssp             CCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEE
T ss_pred             CcEEEeCCCCCccCCC--CcChhHhhcCCcCcCCCEEE
Confidence            6789999999999974  35799999999999999996

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=98.80  E-value=1.2e-08  Score=75.65  Aligned_cols=89  Identities=22%  Similarity=0.343  Sum_probs=60.0

Q ss_pred             EEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecCC-CceEEEEcCC---CCCcCCC---CCCCCcCCCCCceE
Q 026789           25 HVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQS---SFNACNT---TSPLSRTTNSPASV   96 (233)
Q Consensus        25 ~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~-~H~V~~V~~~---~y~~C~~---~~~~~~~~~G~~~v   96 (233)
                      +.||++ .++.+.+          +.+++++||+|.|.+... .|+|+..+..   .++.+..   .+.+.........+
T Consensus         3 V~~~~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~   72 (99)
T 1byp_A            3 VLLGSSDGGLAFVP----------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSV   72 (99)
T ss_dssp             EEESCTTSCCSEES----------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEE
T ss_pred             EEEecCCCcceEeC----------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEE
Confidence            456643 4455533          468899999999987754 6999875321   1222211   01111222335688


Q ss_pred             EeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           97 TLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        97 ~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +++++|.|.|+|.  .||+.||+..|.|.
T Consensus        73 ~f~~~G~y~~~C~--~H~~~gM~G~i~V~   99 (99)
T 1byp_A           73 TLTEKGTYKFYCA--PHAGAGMVGKVTVN   99 (99)
T ss_dssp             EECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             EeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence            9999999999999  89999999999883

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=98.77  E-value=1.1e-08  Score=76.33  Aligned_cols=89  Identities=17%  Similarity=0.252  Sum_probs=60.1

Q ss_pred             EEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecC-CCceEEEEcCCCCC----cCCCC-----CCCCcCCCCC
Q 026789           25 HVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFN----ACNTT-----SPLSRTTNSP   93 (233)
Q Consensus        25 ~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~y~----~C~~~-----~~~~~~~~G~   93 (233)
                      +.||.+ .++.+.+          +.+++++||+|.|.+.. ..|+|+..+...++    .|...     +.........
T Consensus         3 V~~g~~~~~~~F~P----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~   72 (102)
T 1kdj_A            3 VEVGDEVGNFKFYP----------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPS   72 (102)
T ss_dssp             EEESCTTCCCCEES----------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCE
T ss_pred             EEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCE
Confidence            557764 3455533          56899999999998765 46999875333321    11110     1111222235


Q ss_pred             ceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           94 ASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        94 ~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ..++++++|.|+|+|.  .||+.||+..|.|.
T Consensus        73 ~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~  102 (102)
T 1kdj_A           73 FKAKVSTPGTYTFYCT--PHKSANMKGTLTVK  102 (102)
T ss_dssp             EEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred             EEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence            6788899999999999  99999999999883

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=98.71  E-value=2.3e-08  Score=73.86  Aligned_cols=90  Identities=24%  Similarity=0.224  Sum_probs=60.0

Q ss_pred             EEEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecCC-CceEEEEcCC---CCCcCCCCCCCCcCC-CCCceEE
Q 026789           24 RHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQS---SFNACNTTSPLSRTT-NSPASVT   97 (233)
Q Consensus        24 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~-~H~V~~V~~~---~y~~C~~~~~~~~~~-~G~~~v~   97 (233)
                      ++.+|++ .++.+.+          +..++++||+|.|.+... .|+|+..+..   +++.+.......... .....++
T Consensus         3 ~V~m~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~t   72 (98)
T 2plt_A            3 TVKLGADSGALEFVP----------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVK   72 (98)
T ss_dssp             EEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEE
T ss_pred             EEEEecCCCCceEeC----------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEE
Confidence            4556643 3466533          468899999999988754 6999875321   222211100001122 3346789


Q ss_pred             eccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           98 LTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        98 l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ++++|.|+|+|.  .||+.||+..|.|.
T Consensus        73 f~~~G~y~y~C~--~H~~~gM~G~i~V~   98 (98)
T 2plt_A           73 LTAAGEYGYYCE--PHQGAGMVGKIIVQ   98 (98)
T ss_dssp             CCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred             eCCCeEEEEEcC--CccccCCeEEEEEC
Confidence            999999999999  89999999999883

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=98.69  E-value=3.9e-08  Score=72.74  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             EEEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecC-CCceEEEEcCCC--CCcCCCC-CCCCcCCCCCceEEe
Q 026789           24 RHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSS--FNACNTT-SPLSRTTNSPASVTL   98 (233)
Q Consensus        24 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~--y~~C~~~-~~~~~~~~G~~~v~l   98 (233)
                      ++.+|.+ .++.+.+          +.+++++||+|.|.+.. ..|+|+..+...  .+..... +...........+++
T Consensus         4 ~V~~~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf   73 (98)
T 1pcs_A            4 TVKMGSDSGALVFEP----------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTF   73 (98)
T ss_dssp             EEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEEC
T ss_pred             EEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEc
Confidence            4566654 4565533          46899999999998765 469998743210  0000000 001112233467889


Q ss_pred             ccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           99 TASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        99 ~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +++|.|+|+|.  .||..||+..|.|.
T Consensus        74 ~~~G~y~~~C~--~H~~~gM~G~i~V~   98 (98)
T 1pcs_A           74 TEPGTYTYYCE--PHRGAGMVGKVVVE   98 (98)
T ss_dssp             CSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             CCCeEEEEEcC--CccccCCeEEEEEC
Confidence            99999999999  89999999999883

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1

Probab=98.66  E-value=5.9e-09  Score=78.58  Aligned_cols=31  Identities=45%  Similarity=0.866  Sum_probs=28.5

Q ss_pred             ceeeecCCCCccCCCCCCcchhccccCCcccCCceec
Q 026789          196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILG  232 (233)
Q Consensus       196 ~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~L~  232 (233)
                      ++|+|||+.||+++      |++|+++++|+|||+|+
T Consensus         1 ~~~~VG~~~GW~~~------y~~Wa~~~~f~vGD~L~   31 (96)
T 2cbp_A            1 AVYVVGGSGGWTFN------TESWPKGKRFRAGDILL   31 (96)
T ss_dssp             CEEETTGGGCSCSS------CTTTTTTCCBCTTCEEE
T ss_pred             CEEEECCcCCCccC------hhhhccCceEcCCCEEE
Confidence            46999999999984      99999999999999996

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.33  E-value=8.9e-07  Score=69.78  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             cCeeeeeCCEEEEEecCC-CceEEEEcCCC----CCcCCCCCCCCcCCCC-CceEEeccCCCeeEecCCCCCCCCCCeee
Q 026789           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSS----FNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLA  121 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-~H~V~~V~~~~----y~~C~~~~~~~~~~~G-~~~v~l~~~G~~yFic~~~~hC~~Gmk~~  121 (233)
                      +..++++||+|.|..... .|+|+..+...    |+.       .....| ...++++++|.|.|+|+.  |.  ||+..
T Consensus        60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~s-------~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~  128 (132)
T 3c75_A           60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  128 (132)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCceEEEEeCCCCCcccccc-------cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEE
Confidence            568999999999986654 69998753221    111       112223 467889999999999996  65  99999


Q ss_pred             EEec
Q 026789          122 INVS  125 (233)
Q Consensus       122 I~V~  125 (233)
                      |.|.
T Consensus       129 I~V~  132 (132)
T 3c75_A          129 VIVE  132 (132)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=98.26  E-value=1.1e-06  Score=68.44  Aligned_cols=71  Identities=23%  Similarity=0.250  Sum_probs=51.6

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCC--CCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~--~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +.+++++||+|.|.+....|+|+..+.     |.....  ..........++++++|.|+|+|..  |+.  |+..|.|.
T Consensus        21 ~~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~   91 (122)
T 2ux6_A           21 ASLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVG   91 (122)
T ss_dssp             SEEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEe
Confidence            568999999999998776899987531     111111  1111223578899999999999996  777  99999997


Q ss_pred             CC
Q 026789          126 AR  127 (233)
Q Consensus       126 ~~  127 (233)
                      ..
T Consensus        92 ~~   93 (122)
T 2ux6_A           92 DA   93 (122)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=98.26  E-value=4.7e-06  Score=65.67  Aligned_cols=91  Identities=14%  Similarity=0.247  Sum_probs=58.3

Q ss_pred             EEEecCCCCCccCCCCCCCccccccCeeeeeC-CEEEEEecC-C-------CceEEEEcCCC----------------CC
Q 026789           24 RHVVGDALGWIVPPNGPATYSNWAANQTFTVG-DTLVFNFAA-G-------NHDVTRVTQSS----------------FN   78 (233)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vG-D~L~F~y~~-~-------~H~V~~V~~~~----------------y~   78 (233)
                      ++.|+..+...+.+          +..+++.| |.+.|.+.+ +       .|+++..+..+                |.
T Consensus         4 ~v~i~~~d~m~F~p----------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v   73 (129)
T 1cuo_A            4 ETTVTSGDTMTYST----------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFV   73 (129)
T ss_dssp             EEEEEECSSSCCSC----------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTS
T ss_pred             EEEEEeCCCceEcc----------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccc
Confidence            45566555666643          56899999 977777754 2       39998775432                21


Q ss_pred             cCCCCCCC---CcCCCC-CceEEec-----cCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           79 ACNTTSPL---SRTTNS-PASVTLT-----ASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        79 ~C~~~~~~---~~~~~G-~~~v~l~-----~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      .=+..+-+   .....| ...++++     ++|.|+|+|++++|=+ ||+..|.|.
T Consensus        74 ~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~  128 (129)
T 1cuo_A           74 TPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE  128 (129)
T ss_dssp             CTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred             ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence            10001111   112233 3556664     7899999999999999 899999985

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=98.25  E-value=2.4e-06  Score=63.47  Aligned_cols=88  Identities=20%  Similarity=0.217  Sum_probs=57.8

Q ss_pred             EEEecCC-CCCccCCCCCCCccccccCeeeeeCCEEEEEecC-CCceEEEEcCCCCCcCCC--------CCCCCcCCCCC
Q 026789           24 RHVVGDA-LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFNACNT--------TSPLSRTTNSP   93 (233)
Q Consensus        24 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~y~~C~~--------~~~~~~~~~G~   93 (233)
                      ++.||.+ .+..+.+          ...+++.||+|.|.... ..|+|..-... + .+..        .+...+.....
T Consensus         4 ~V~~~~~~~~~~f~p----------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~~~i~pG~~   71 (105)
T 3cvb_A            4 TVKMGADSGLFQFEP----------ANVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQLMFSPGES   71 (105)
T ss_dssp             EEEESCTTCCSCEES----------SEEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEEEECSTTCE
T ss_pred             EEEEeecCCccEEeC----------CEEEEcCCCEEEEEECCCCCCeEEEeCCC-C-CcccccccccccccccccCCCCe
Confidence            4567653 4566543          46889999999998664 46998874211 1 1100        00011122334


Q ss_pred             ceEEe---ccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           94 ASVTL---TASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        94 ~~v~l---~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ..+++   +++|.|+|+|.  .||..||+..|.|.
T Consensus        72 ~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  104 (105)
T 3cvb_A           72 YEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE  104 (105)
T ss_dssp             EEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence            67778   78999999999  89999999999985

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=98.24  E-value=2.6e-06  Score=70.18  Aligned_cols=91  Identities=14%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             EEEecCCCCCccCCCCCCCccccccCeee-eeCCEEEEEecC--C------CceEEEEcCCCCC---------------c
Q 026789           24 RHVVGDALGWIVPPNGPATYSNWAANQTF-TVGDTLVFNFAA--G------NHDVTRVTQSSFN---------------A   79 (233)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~L~F~y~~--~------~H~V~~V~~~~y~---------------~   79 (233)
                      ++.|+.++++.|.+          +.+++ +.||.|.|.|.+  .      .|+++..+..+++               .
T Consensus        44 ~V~I~~~d~m~F~P----------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~  113 (167)
T 3ay2_A           44 AATVESNDNMQFNT----------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVK  113 (167)
T ss_dssp             EEEEEECTTSCBSC----------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSC
T ss_pred             EEEEEeCCCceEec----------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccccc
Confidence            56677666776643          56788 889987766643  2      2999876543221               0


Q ss_pred             CCCCCCC---CcCCCC-CceEEec----cCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           80 CNTTSPL---SRTTNS-PASVTLT----ASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        80 C~~~~~~---~~~~~G-~~~v~l~----~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      =+..+.+   .....| ...|+++    ++|.|+|+|++.+|-+ ||+..|.|.
T Consensus       114 ~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~  166 (167)
T 3ay2_A          114 PDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV  166 (167)
T ss_dssp             TTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred             ccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence            0000000   112333 4567775    7899999999999998 999999985

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=98.18  E-value=5.8e-07  Score=67.01  Aligned_cols=67  Identities=16%  Similarity=0.211  Sum_probs=46.5

Q ss_pred             cCeeeeeCCEEEEEecCC---CceEEEEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCCCCCCCCCCeee
Q 026789           48 ANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGHCLGGQKLA  121 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~~~hC~~Gmk~~  121 (233)
                      +.+++++||+|.|.+.+.   .|++..-.. ..+        .....|   ...++.+++|.|.|+|.  .||..||+..
T Consensus        28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~~~~-~~~--------~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~   96 (100)
T 4hci_A           28 NVITIPINESTTLLLKNKGKSEHTFTIKKL-GID--------VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGK   96 (100)
T ss_dssp             SEEEECTTSCEEEEEEECSSSCEEEEEGGG-TEE--------EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEE
T ss_pred             CEEEECCCCEEEEEEEcCCCceEEEEEecC-Ccc--------eeecCCcceeEEEecccCceEEEECc--cccCCCCEEE
Confidence            578999999999987542   377765211 111        111222   23456679999999997  7999999999


Q ss_pred             EEec
Q 026789          122 INVS  125 (233)
Q Consensus       122 I~V~  125 (233)
                      |.|.
T Consensus        97 i~Ve  100 (100)
T 4hci_A           97 VIVK  100 (100)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9884

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=98.05  E-value=6.6e-06  Score=61.83  Aligned_cols=67  Identities=21%  Similarity=0.227  Sum_probs=47.8

Q ss_pred             cCeeeeeCCEEEEEecCC-CceEEEEcCCC----CCcCCCCCCCCcCCCC-CceEEeccCCCeeEecCCCCCCCCCCeee
Q 026789           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSS----FNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLA  121 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-~H~V~~V~~~~----y~~C~~~~~~~~~~~G-~~~v~l~~~G~~yFic~~~~hC~~Gmk~~  121 (233)
                      ..+++++||+|.|..... .|+|...+..+    |+.+       ....| ...++++++|.|+|+|..  |.  ||+..
T Consensus        33 ~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~tf~~~G~y~y~C~~--H~--gM~G~  101 (105)
T 2ov0_A           33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLTFTEAGTYDYHCTP--HP--FMRGK  101 (105)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            568999999999987654 69998643211    2211       12223 467888999999999997  44  99999


Q ss_pred             EEec
Q 026789          122 INVS  125 (233)
Q Consensus       122 I~V~  125 (233)
                      |.|.
T Consensus       102 i~V~  105 (105)
T 2ov0_A          102 VVVE  105 (105)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9873

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=98.04  E-value=1.6e-05  Score=62.55  Aligned_cols=91  Identities=18%  Similarity=0.257  Sum_probs=57.4

Q ss_pred             EEEecCCCCCccCCCCCCCccccccCeee-eeCCEEEEEecCC--------CceEEEEcCCCCC----------------
Q 026789           24 RHVVGDALGWIVPPNGPATYSNWAANQTF-TVGDTLVFNFAAG--------NHDVTRVTQSSFN----------------   78 (233)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~L~F~y~~~--------~H~V~~V~~~~y~----------------   78 (233)
                      ++.|+.++++.+.+          +.+++ +.||+|.|.+.+.        .|+++..+.++.+                
T Consensus         4 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~   73 (128)
T 1nwp_A            4 KVTVDSTDQMSFNT----------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYL   73 (128)
T ss_dssp             EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTS
T ss_pred             EEEEEeCCCccEec----------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccc
Confidence            45566666677744          46788 8899877777542        2999876433211                


Q ss_pred             cCCCCCCC---CcCCCC-CceEEec----cCCC-eeEecCCCCCCCCCCeeeEEec
Q 026789           79 ACNTTSPL---SRTTNS-PASVTLT----ASGP-HYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        79 ~C~~~~~~---~~~~~G-~~~v~l~----~~G~-~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      .=+..+-+   .....| ...++++    ++|. |.|+|++++|=+ ||+..|.|.
T Consensus        74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  128 (128)
T 1nwp_A           74 KDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK  128 (128)
T ss_dssp             CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred             ccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence            00000000   112333 4567765    4676 999999999999 999999873

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=98.01  E-value=2.2e-05  Score=61.78  Aligned_cols=91  Identities=16%  Similarity=0.245  Sum_probs=55.9

Q ss_pred             EEEecCCCCCccCCCCCCCccccccCeee-eeCCEEEEEecCC--------CceEEEEcCCC----------------CC
Q 026789           24 RHVVGDALGWIVPPNGPATYSNWAANQTF-TVGDTLVFNFAAG--------NHDVTRVTQSS----------------FN   78 (233)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~L~F~y~~~--------~H~V~~V~~~~----------------y~   78 (233)
                      ++.|+.+++..+.+          +..++ +.||.|.|.+.+.        .|+++..+.++                |.
T Consensus         4 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~   73 (129)
T 2ccw_A            4 EATVESNDAMQYNV----------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYV   73 (129)
T ss_dssp             EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTS
T ss_pred             EEEEEeCCCccEec----------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccc
Confidence            45566565666633          45666 7799777776542        39998765432                21


Q ss_pred             cCCCCCCC---CcCCCC-CceEEec----cCCC-eeEecCCCCCCCCCCeeeEEec
Q 026789           79 ACNTTSPL---SRTTNS-PASVTLT----ASGP-HYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        79 ~C~~~~~~---~~~~~G-~~~v~l~----~~G~-~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      .=+..+-+   .....| ...|+++    ++|. |+|+|++++|=+ ||+..|.|.
T Consensus        74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~  128 (129)
T 2ccw_A           74 KAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG  128 (129)
T ss_dssp             CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred             ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence            10001101   112333 4567665    4665 999999999998 999999985

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=98.01  E-value=2.9e-05  Score=61.07  Aligned_cols=90  Identities=20%  Similarity=0.263  Sum_probs=56.3

Q ss_pred             EEecCCCCCccCCCCCCCccccccCeee-eeCCEEEEEecCC--------CceEEEEcCCC----------------CCc
Q 026789           25 HVVGDALGWIVPPNGPATYSNWAANQTF-TVGDTLVFNFAAG--------NHDVTRVTQSS----------------FNA   79 (233)
Q Consensus        25 ~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~L~F~y~~~--------~H~V~~V~~~~----------------y~~   79 (233)
                      +.|+..+++.+.+          +.+++ +.||+|.|.|.+.        .|+++..+.++                |..
T Consensus         4 v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~   73 (128)
T 2iaa_C            4 VSIEGNDSMQFNT----------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVK   73 (128)
T ss_dssp             EEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSC
T ss_pred             EEEEeCCCceEec----------CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccc
Confidence            4565556677643          45677 7799777777543        39998764332                211


Q ss_pred             CCCCCCC---CcCCCC-CceEEec----cCCC-eeEecCCCCCCCCCCeeeEEec
Q 026789           80 CNTTSPL---SRTTNS-PASVTLT----ASGP-HYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        80 C~~~~~~---~~~~~G-~~~v~l~----~~G~-~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      =+..+-+   .....| ...++++    ++|. |.|+|++++|=+ ||+..|.|.
T Consensus        74 ~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  127 (128)
T 2iaa_C           74 AGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG  127 (128)
T ss_dssp             TTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred             cccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence            0000101   112333 4567775    5785 999999999999 999999985

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=97.97  E-value=1e-05  Score=61.06  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             cCeeeeeCCEEEEEecCC-CceEEEEcCCC----CCcCCCCCCCCcCCCC-CceEEeccCCCeeEecCCCCCCCCCCeee
Q 026789           48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSS----FNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLA  121 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-~H~V~~V~~~~----y~~C~~~~~~~~~~~G-~~~v~l~~~G~~yFic~~~~hC~~Gmk~~  121 (233)
                      +..++++||+|.|..... .|+|+..+...    |+.       .....| ...++++++|.|.|+|..  |+  ||+..
T Consensus        34 ~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~  102 (106)
T 1id2_A           34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  102 (106)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            568999999999986644 69998643220    111       112223 467889999999999997  76  99999


Q ss_pred             EEec
Q 026789          122 INVS  125 (233)
Q Consensus       122 I~V~  125 (233)
                      |.|.
T Consensus       103 I~V~  106 (106)
T 1id2_A          103 VIVE  106 (106)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5

Probab=97.48  E-value=3.4e-05  Score=64.05  Aligned_cols=81  Identities=19%  Similarity=0.263  Sum_probs=52.9

Q ss_pred             eeeeeCCEEEE---EecC------CCceEEEEcCCCCCcCCCCC-CCCcC--C--CCCceEEec-------------cCC
Q 026789           50 QTFTVGDTLVF---NFAA------GNHDVTRVTQSSFNACNTTS-PLSRT--T--NSPASVTLT-------------ASG  102 (233)
Q Consensus        50 ~~f~vGD~L~F---~y~~------~~H~V~~V~~~~y~~C~~~~-~~~~~--~--~G~~~v~l~-------------~~G  102 (233)
                      ..+++||.|-|   +|..      ..+.|++|++.+|+.|+... .....  +  .+...|++.             +.|
T Consensus        24 v~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg  103 (178)
T 1iko_P           24 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKN  103 (178)
T ss_dssp             ECCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTT
T ss_pred             EEecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCC
Confidence            34567999988   5543      24889999999999998763 22111  1  222233331             245


Q ss_pred             -CeeEecCCC-----------CCCCC-CCeeeEEecCCCCC
Q 026789          103 -PHYFICSFP-----------GHCLG-GQKLAINVSARGSS  130 (233)
Q Consensus       103 -~~yFic~~~-----------~hC~~-Gmk~~I~V~~~~a~  130 (233)
                       .|||||+-.           ++|.. +|||.|.|......
T Consensus       104 ~~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~  144 (178)
T 1iko_P          104 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS  144 (178)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred             CceEEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence             789999864           78976 89999999766544

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=96.81  E-value=0.0015  Score=48.92  Aligned_cols=67  Identities=10%  Similarity=0.139  Sum_probs=44.5

Q ss_pred             cCeeeeeCCEEEEEecCC---CceEEEEcCCCCCcCCCCCCCCcCCCC-CceEEe--ccCCCeeEecCCCCCCCC-CCee
Q 026789           48 ANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTL--TASGPHYFICSFPGHCLG-GQKL  120 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~l--~~~G~~yFic~~~~hC~~-Gmk~  120 (233)
                      +..+++.||.|.|.+.+.   .|++..-+.   ..      ......| ...+++  +++|.|+|.|..  ||.. +|+.
T Consensus        38 ~~i~v~~G~~V~~~~~n~d~~~H~~~i~~~---~~------~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g  106 (112)
T 1iby_A           38 ETLVVKKGDAVKVVVENKSPISEGFSIDAF---GV------QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG  106 (112)
T ss_dssp             CEEEEETTCEEEEEEEECSSSCEEEEEGGG---TE------EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred             CEEEEeCCCEEEEEEEECCCCeEEEEEcCC---Cc------eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEE
Confidence            467899999999977542   588764221   10      1112223 345555  899999999995  7754 3999


Q ss_pred             eEEec
Q 026789          121 AINVS  125 (233)
Q Consensus       121 ~I~V~  125 (233)
                      .|.|.
T Consensus       107 ~i~V~  111 (112)
T 1iby_A          107 TLNVV  111 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99885

>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}

Probab=96.73  E-value=0.0011  Score=54.90  Aligned_cols=78  Identities=23%  Similarity=0.306  Sum_probs=49.1

Q ss_pred             CeeeeeCCEEEE---EecC-------CCceEEEEcCCCCCcCCCCCCCC-cC-------CCCCceEEe------------
Q 026789           49 NQTFTVGDTLVF---NFAA-------GNHDVTRVTQSSFNACNTTSPLS-RT-------TNSPASVTL------------   98 (233)
Q Consensus        49 ~~~f~vGD~L~F---~y~~-------~~H~V~~V~~~~y~~C~~~~~~~-~~-------~~G~~~v~l------------   98 (233)
                      .+.+++||.|-+   +|..       ....+++|++++|++|+...... ..       ..+..+|++            
T Consensus        51 ~i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~  130 (177)
T 2x11_B           51 HIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF  130 (177)
T ss_dssp             EEEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCC
T ss_pred             eEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCc
Confidence            367899999977   5652       35677899999999998754321 11       112323322            


Q ss_pred             -ccCC-CeeEecCCC-----CCCCCCCeeeEEecCCCC
Q 026789           99 -TASG-PHYFICSFP-----GHCLGGQKLAINVSARGS  129 (233)
Q Consensus        99 -~~~G-~~yFic~~~-----~hC~~Gmk~~I~V~~~~a  129 (233)
                       =++| .||||++-.     +-|   |||.|.|.....
T Consensus       131 EF~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~  165 (177)
T 2x11_B          131 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS  165 (177)
T ss_dssp             CCCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred             cccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence             0345 578887632     345   999999976543

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...

Probab=96.59  E-value=0.021  Score=44.63  Aligned_cols=87  Identities=13%  Similarity=0.144  Sum_probs=51.6

Q ss_pred             EEecCCCCCccCCCCCCCccccccCeeeee-CCEEEEEecCC--------CceEEEEcCC----------------CCCc
Q 026789           25 HVVGDALGWIVPPNGPATYSNWAANQTFTV-GDTLVFNFAAG--------NHDVTRVTQS----------------SFNA   79 (233)
Q Consensus        25 ~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~v-GD~L~F~y~~~--------~H~V~~V~~~----------------~y~~   79 (233)
                      +.|-.++...+.+          +.+++.. |++|.|.+.+.        .|+++....+                +|-.
T Consensus         5 v~i~~~d~M~F~p----------~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~   74 (125)
T 3fsa_A            5 VDIQGNDQMQFNT----------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLK   74 (125)
T ss_dssp             EEEEBCTTSCBSC----------SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSC
T ss_pred             EEEEccCCcEEec----------CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCC
Confidence            4455555566633          4566754 99998888653        3999986322                1211


Q ss_pred             CCCCCCC---CcCCCC-CceEEec-----cCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           80 CNTTSPL---SRTTNS-PASVTLT-----ASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        80 C~~~~~~---~~~~~G-~~~v~l~-----~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      =+..+-+   .....| .+.++++     +.|.|-|+|+  +|=  ||+..|.|.
T Consensus        75 ~~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~  125 (125)
T 3fsa_A           75 PDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK  125 (125)
T ss_dssp             TTCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred             CCCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence            0001111   112333 3567776     4599999999  887  999999873

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=96.57  E-value=0.0049  Score=48.54  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             cCeeeeeCCEEEEEecCC--CceEEEEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCCCCCCC---CCCe
Q 026789           48 ANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGHCL---GGQK  119 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~--~H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~~~hC~---~Gmk  119 (233)
                      +..++.+||.|.|...+.  .|++..-+   +..      ......|   ...++++++|.|+|+|+.  +|.   .+|+
T Consensus        60 ~~l~Vp~G~~V~~~vts~DV~Hsf~ip~---~~~------k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~  128 (135)
T 2cua_A           60 NPIEVPQGAEIVFKITSPDVIHGFHVEG---TNI------NVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF  128 (135)
T ss_dssp             SSEEEETTSEEEEEEEBSSSCEEEEETT---SSC------EEEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCE
T ss_pred             CEEEEcCCCEEEEEEEeCCccceEEecC---CCc------eeEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCE
Confidence            468999999999998653  47766411   110      0011223   356888999999999985  454   6899


Q ss_pred             eeEEec
Q 026789          120 LAINVS  125 (233)
Q Consensus       120 ~~I~V~  125 (233)
                      +.|.|.
T Consensus       129 g~v~V~  134 (135)
T 2cua_A          129 GTIVVK  134 (135)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999885

>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*

Probab=96.37  E-value=0.0037  Score=51.92  Aligned_cols=76  Identities=16%  Similarity=0.319  Sum_probs=47.4

Q ss_pred             CeeeeeCCEEEE---EecC--------CCceEEEEcCCCCCcCCCCC-CCCcC------C-CCCce--------------
Q 026789           49 NQTFTVGDTLVF---NFAA--------GNHDVTRVTQSSFNACNTTS-PLSRT------T-NSPAS--------------   95 (233)
Q Consensus        49 ~~~f~vGD~L~F---~y~~--------~~H~V~~V~~~~y~~C~~~~-~~~~~------~-~G~~~--------------   95 (233)
                      .+.+++||.|-+   +|..        ....+++|++.+|++|+... ....+      . .|..+              
T Consensus        49 ~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~G  128 (182)
T 3czu_B           49 TIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG  128 (182)
T ss_dssp             EEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTS
T ss_pred             eEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCC
Confidence            467899999977   5543        23678899999999998653 11111      1 12222              


Q ss_pred             EEeccCCCeeEecCC----CCCCCCCCeeeEEecCC
Q 026789           96 VTLTASGPHYFICSF----PGHCLGGQKLAINVSAR  127 (233)
Q Consensus        96 v~l~~~G~~yFic~~----~~hC~~Gmk~~I~V~~~  127 (233)
                      +++..--.||||++-    ++.|   ||+.|.|...
T Consensus       129 lEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k  161 (182)
T 3czu_B          129 KEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGK  161 (182)
T ss_dssp             CCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC-
T ss_pred             eeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecC
Confidence            233322357888863    4555   8999999744

>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*

Probab=95.65  E-value=0.0088  Score=47.58  Aligned_cols=76  Identities=22%  Similarity=0.320  Sum_probs=48.0

Q ss_pred             CeeeeeCCEEEE---EecC-------CCceEEEEcCCCCCcCCCCCCCC-cC-------CCCCceEEec-----------
Q 026789           49 NQTFTVGDTLVF---NFAA-------GNHDVTRVTQSSFNACNTTSPLS-RT-------TNSPASVTLT-----------   99 (233)
Q Consensus        49 ~~~f~vGD~L~F---~y~~-------~~H~V~~V~~~~y~~C~~~~~~~-~~-------~~G~~~v~l~-----------   99 (233)
                      .+.+++||.|-+   +|..       ....+++|++.+|++|+...... ..       ..+..+|++.           
T Consensus        22 ~i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~  101 (138)
T 1shx_A           22 HIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF  101 (138)
T ss_dssp             EEEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCC
T ss_pred             eEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCce
Confidence            467889999977   5542       25677899999999998654221 11       0133233220           


Q ss_pred             --cCC-CeeEecCC-----CCCCCCCCeeeEEecCC
Q 026789          100 --ASG-PHYFICSF-----PGHCLGGQKLAINVSAR  127 (233)
Q Consensus       100 --~~G-~~yFic~~-----~~hC~~Gmk~~I~V~~~  127 (233)
                        ++| .||||++-     ++.|   |||.|.|...
T Consensus       102 EF~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~  134 (138)
T 1shx_A          102 EFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPT  134 (138)
T ss_dssp             CCCTTEEEEEEEEESSCCSCSCC---CEEEEEECCT
T ss_pred             eecCCCeEEEEEcCCCCCCCCce---eEEEEEEEcc
Confidence              245 57888753     2346   9999999754

>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}

Probab=95.56  E-value=0.0073  Score=48.21  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             eeeeeCCEEEE---EecC---------CCceEEEEcCCCCCcCCCCC-CCCcC----CCCC--------------ceEEe
Q 026789           50 QTFTVGDTLVF---NFAA---------GNHDVTRVTQSSFNACNTTS-PLSRT----TNSP--------------ASVTL   98 (233)
Q Consensus        50 ~~f~vGD~L~F---~y~~---------~~H~V~~V~~~~y~~C~~~~-~~~~~----~~G~--------------~~v~l   98 (233)
                      ..+++||.|-+   +|..         ....++.|++.+|++|+... .....    ..+.              ..+.+
T Consensus        22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF  101 (141)
T 3d12_B           22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF  101 (141)
T ss_dssp             ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence            56789999977   4543         34678899999999998752 21111    1122              22334


Q ss_pred             ccCCCeeEecCC-----------CCCCCC-CCeeeEEec
Q 026789           99 TASGPHYFICSF-----------PGHCLG-GQKLAINVS  125 (233)
Q Consensus        99 ~~~G~~yFic~~-----------~~hC~~-Gmk~~I~V~  125 (233)
                      ..--.||||++-           +|-|.. .|||.|.|.
T Consensus       102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~  140 (141)
T 3d12_B          102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG  140 (141)
T ss_dssp             CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred             eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence            333468888874           356865 899999985

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=94.93  E-value=0.015  Score=53.45  Aligned_cols=75  Identities=23%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             ccCeeeeeCCEEEEEecCC---CceEEEEcCCCCCcCCCCCCCCcCCCC-C--ceEEeccCCCeeEecCCCCCCCCCCee
Q 026789           47 AANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNS-P--ASVTLTASGPHYFICSFPGHCLGGQKL  120 (233)
Q Consensus        47 a~~~~f~vGD~L~F~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G-~--~~v~l~~~G~~yFic~~~~hC~~Gmk~  120 (233)
                      ...++++.||+|+|++.+.   .|++..-.......|.       ...| .  ..|+++++|++||.|.+.+|-..||+.
T Consensus        54 ~p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~-------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G  126 (447)
T 2dv6_A           54 NPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV-------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEG  126 (447)
T ss_dssp             SCCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB-------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEE
T ss_pred             CCeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee-------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEE
Confidence            3578999999999988653   3776541111112232       1222 2  345567899999999998898889999


Q ss_pred             eEEecCCC
Q 026789          121 AINVSARG  128 (233)
Q Consensus       121 ~I~V~~~~  128 (233)
                      .|.|....
T Consensus       127 ~i~V~~~~  134 (447)
T 2dv6_A          127 NIQVLPGN  134 (447)
T ss_dssp             EEEEESSC
T ss_pred             EEEEeCCc
Confidence            99997643

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...

Probab=94.90  E-value=0.06  Score=43.99  Aligned_cols=66  Identities=17%  Similarity=0.161  Sum_probs=43.6

Q ss_pred             cCeeeeeCCEEEEEecCC--CceEEEEcCCCCCcCCCCCCCCc-CCCC---CceEEeccCCCeeEecCCCCCCCC---CC
Q 026789           48 ANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSR-TTNS---PASVTLTASGPHYFICSFPGHCLG---GQ  118 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~--~H~V~~V~~~~y~~C~~~~~~~~-~~~G---~~~v~l~~~G~~yFic~~~~hC~~---Gm  118 (233)
                      +...+.+|+.+.|...+.  .|+...-   ++       .++. ...|   ...++.+++|.|||+|+.  .|..   +|
T Consensus        93 n~l~VP~G~~Vr~~vTS~DViHsf~IP---~l-------gik~da~PG~~n~~~~~~~kpG~y~g~Cse--~CG~~Hs~M  160 (168)
T 3s8f_B           93 NPIEVPQGAEIVFKITSPDVIHGFHVE---GT-------NINVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNM  160 (168)
T ss_dssp             SSEEEETTSEEEEEEECSSSCEEEEET---TS-------SCEEEECTTBCEEEEEECCSCEEEEEECCS--CCSTTGGGC
T ss_pred             CEEEEeCCCeEEEEEecCCceEEEEEC---CC-------CeEEEecCCceeEEEEEeCCCEEEEEECCc--CCCCCcCCC
Confidence            457788899999987653  3665541   11       1111 1123   246778999999999994  5654   59


Q ss_pred             eeeEEec
Q 026789          119 KLAINVS  125 (233)
Q Consensus       119 k~~I~V~  125 (233)
                      ++.|.|.
T Consensus       161 ~g~V~V~  167 (168)
T 3s8f_B          161 FGTIVVK  167 (168)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999885

>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E

Probab=94.88  E-value=0.0061  Score=48.62  Aligned_cols=77  Identities=16%  Similarity=0.235  Sum_probs=48.6

Q ss_pred             eeeeeCCEEEE---EecCC------CceEEEEcCCCCCcCCCCC-CCCcC----CCCCce--------------EEeccC
Q 026789           50 QTFTVGDTLVF---NFAAG------NHDVTRVTQSSFNACNTTS-PLSRT----TNSPAS--------------VTLTAS  101 (233)
Q Consensus        50 ~~f~vGD~L~F---~y~~~------~H~V~~V~~~~y~~C~~~~-~~~~~----~~G~~~--------------v~l~~~  101 (233)
                      ..+++||.|-|   +|..+      ...++.|++.+|+.|+... .....    ..+...              +++..-
T Consensus        23 v~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g  102 (140)
T 2vsm_B           23 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKN  102 (140)
T ss_dssp             ECCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTT
T ss_pred             EEecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCC
Confidence            44578999988   45432      5778899999999998763 22111    122222              233322


Q ss_pred             CCeeEecCCC-----------CCCCC-CCeeeEEecC
Q 026789          102 GPHYFICSFP-----------GHCLG-GQKLAINVSA  126 (233)
Q Consensus       102 G~~yFic~~~-----------~hC~~-Gmk~~I~V~~  126 (233)
                      -.||||++-.           |-|.. .|||.|.|..
T Consensus       103 ~~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~  139 (140)
T 2vsm_B          103 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH  139 (140)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             CceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence            3578888743           47865 7999999863

>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}

Probab=93.76  E-value=0.06  Score=43.64  Aligned_cols=36  Identities=14%  Similarity=0.272  Sum_probs=27.3

Q ss_pred             CeeeeeCCEEEE---EecC--------CCceEEEEcCCCCCcCCCCC
Q 026789           49 NQTFTVGDTLVF---NFAA--------GNHDVTRVTQSSFNACNTTS   84 (233)
Q Consensus        49 ~~~f~vGD~L~F---~y~~--------~~H~V~~V~~~~y~~C~~~~   84 (233)
                      .+.+++||.|-+   +|..        ....+++|++.+|++|+...
T Consensus        31 ~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   77 (157)
T 2wo3_B           31 TVEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQ   77 (157)
T ss_dssp             EEEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTT
T ss_pred             EEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCC
Confidence            467889999977   5542        23457899999999998754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.84  E-value=0.098  Score=50.71  Aligned_cols=67  Identities=18%  Similarity=0.309  Sum_probs=46.5

Q ss_pred             cCeeeeeCCEEEEEecCC------CceEEEEcCCCCCcCCCCCCCC-cCCCC---CceEEeccCCCeeEecCCCCCCCCC
Q 026789           48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLS-RTTNS---PASVTLTASGPHYFICSFPGHCLGG  117 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~------~H~V~~V~~~~y~~C~~~~~~~-~~~~G---~~~v~l~~~G~~yFic~~~~hC~~G  117 (233)
                      +..++.+||.|.|...+.      .|++..-+   +.       +. ....|   ...|+.+++|.|||+|+.  .|..+
T Consensus       558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG-------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~  625 (638)
T 3sbq_A          558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG-------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHAL  625 (638)
T ss_dssp             CEEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT-------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTT
T ss_pred             CEEEEecCceeEEEEecCCcCCCceeeeEecC---CC-------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCC
Confidence            568899999999987762      58776521   11       11 11223   246777999999999995  67654


Q ss_pred             ---CeeeEEecC
Q 026789          118 ---QKLAINVSA  126 (233)
Q Consensus       118 ---mk~~I~V~~  126 (233)
                         |+..|.|..
T Consensus       626 Hs~M~G~ViVEP  637 (638)
T 3sbq_A          626 HMEMVGRMMVEP  637 (638)
T ss_dssp             CTTCEEEEEEEC
T ss_pred             cccceEEEEEec
Confidence               999998863

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=92.62  E-value=0.1  Score=50.46  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=46.4

Q ss_pred             cCeeeeeCCEEEEEecCC------CceEEEEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCC---CCCCC
Q 026789           48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSF---PGHCL  115 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~------~H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~---~~hC~  115 (233)
                      ...++++||.|.|.+.+.      .|++..-+. .. .+       ....|   ...|+++++|.|||+|..   ..|  
T Consensus       513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~-gv-~~-------~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--  581 (595)
T 1fwx_A          513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNY-GV-AM-------EIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--  581 (595)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEETTT-TE-EE-------EECTTCEEEEEEECCSCEEEEEECCSCCSTTC--
T ss_pred             CEEEEECCCEEEEEEEeCCCCCCceeeEEecCC-Cc-ce-------eeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--
Confidence            467899999999987652      477765211 10 01       11223   246778899999999993   244  


Q ss_pred             CCCeeeEEecCC
Q 026789          116 GGQKLAINVSAR  127 (233)
Q Consensus       116 ~Gmk~~I~V~~~  127 (233)
                      .||+..|.|...
T Consensus       582 ~gM~G~IiV~p~  593 (595)
T 1fwx_A          582 MEMRGRMLVEPK  593 (595)
T ss_dssp             TTCEEEEEEECC
T ss_pred             cCCEEEEEEEcC
Confidence            499999998753

>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0

Probab=89.46  E-value=0.25  Score=38.85  Aligned_cols=36  Identities=11%  Similarity=0.232  Sum_probs=27.6

Q ss_pred             CeeeeeCCEEEE---EecC--------CCceEEEEcCCCCCcCCCCC
Q 026789           49 NQTFTVGDTLVF---NFAA--------GNHDVTRVTQSSFNACNTTS   84 (233)
Q Consensus        49 ~~~f~vGD~L~F---~y~~--------~~H~V~~V~~~~y~~C~~~~   84 (233)
                      .+.+++||.|-+   +|..        ....++.|++++|++|+...
T Consensus        21 ~v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   67 (132)
T 3hei_B           21 TIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS   67 (132)
T ss_dssp             EEEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred             eEEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence            457789999977   5643        23667899999999998654

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...

Probab=85.97  E-value=0.52  Score=41.51  Aligned_cols=77  Identities=17%  Similarity=0.219  Sum_probs=47.8

Q ss_pred             cCeeeeeCCEEEEEecCC-----CceEEEEcCCCCCcCCCCCCCCcCCCC-C--ceEEeccCCCeeEecCCCC----CCC
Q 026789           48 ANQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNS-P--ASVTLTASGPHYFICSFPG----HCL  115 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G-~--~~v~l~~~G~~yFic~~~~----hC~  115 (233)
                      ..++++.||.|++++.+.     .|++..-.. .+.  +....+.....| .  ..|+++..|++||.|...+    |-.
T Consensus        65 P~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~-~~~--~~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~  141 (336)
T 1oe1_A           65 PTLVVHEGDYVQLTLVNPATNAMPHNVDFHGA-TGA--LGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVV  141 (336)
T ss_dssp             CCEEEETTCEEEEEEEECTTCCSCBCCEETTS-CSG--GGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHH
T ss_pred             CeEEEcCCCEEEEEEEcCCCCCccccceECCC-CCC--CCCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHh
Confidence            357889999999888763     466654211 110  000111112233 2  4566688999999999754    556


Q ss_pred             CCCeeeEEecCC
Q 026789          116 GGQKLAINVSAR  127 (233)
Q Consensus       116 ~Gmk~~I~V~~~  127 (233)
                      .||...+.|...
T Consensus       142 ~Gl~G~liV~~~  153 (336)
T 1oe1_A          142 SGMSGTLMVLPR  153 (336)
T ss_dssp             TTCEEEEEEECT
T ss_pred             CCCeEEEEEecC
Confidence            899999888643

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=85.78  E-value=0.53  Score=41.44  Aligned_cols=76  Identities=16%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             cCeeeeeCCEEEEEecCC-----CceEEEEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCCCC-----CC
Q 026789           48 ANQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPG-----HC  114 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~~~-----hC  114 (233)
                      ..++++.||.|++++.+.     -|.+..-.....+.-   ..+.....|   ...|+++.+|++||.|-..+     |-
T Consensus        64 P~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~  140 (333)
T 1mzy_A           64 PLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHV  140 (333)
T ss_dssp             CEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHH
T ss_pred             CcEEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhh
Confidence            457889999999988764     366654211111100   011112223   24566688999999999864     77


Q ss_pred             CCCCeeeEEecC
Q 026789          115 LGGQKLAINVSA  126 (233)
Q Consensus       115 ~~Gmk~~I~V~~  126 (233)
                      ..||...+.|..
T Consensus       141 ~~Gl~G~~iV~~  152 (333)
T 1mzy_A          141 VSGMAGCIMVLP  152 (333)
T ss_dssp             HTTCEEEEEEEC
T ss_pred             hCCCEEEEEEcc
Confidence            789999888864

>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A

Probab=81.51  E-value=1  Score=39.67  Aligned_cols=78  Identities=17%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             cCeeeeeCCEEEEEecCC-----CceEEEEcCCCCCcCCCCCCCCcCCCCC--ceEEeccCCCeeEecCCC---CCCCCC
Q 026789           48 ANQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNSP--ASVTLTASGPHYFICSFP---GHCLGG  117 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~--~~v~l~~~G~~yFic~~~---~hC~~G  117 (233)
                      ..++++.||+|++++.+.     .|++.-=-....+.  ......+...+.  ..|+++.+|++||-|...   .|-..|
T Consensus        70 P~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG--~~~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G  147 (327)
T 1kbv_A           70 RMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG--GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG  147 (327)
T ss_dssp             CBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred             CeEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC--CCcceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence            468899999999987654     35553200000110  000011222222  356668899999999863   455679


Q ss_pred             CeeeEEecCC
Q 026789          118 QKLAINVSAR  127 (233)
Q Consensus       118 mk~~I~V~~~  127 (233)
                      |...|.|...
T Consensus       148 l~G~~iV~~~  157 (327)
T 1kbv_A          148 MYGLILVEPK  157 (327)
T ss_dssp             CEEEEEEECT
T ss_pred             eEEEEEEecC
Confidence            9999988753

>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}

Probab=80.40  E-value=0.94  Score=38.19  Aligned_cols=11  Identities=18%  Similarity=0.392  Sum_probs=6.7

Q ss_pred             CeeeeeCCEEE
Q 026789           49 NQTFTVGDTLV   59 (233)
Q Consensus        49 ~~~f~vGD~L~   59 (233)
                      +..++|||+|.
T Consensus        18 Kt~a~vGDIIt   28 (227)
T 3ghp_A           18 KNAAEVGEIIK   28 (227)
T ss_dssp             CSCCCTTCEEE
T ss_pred             cceeecCcEEE
Confidence            34567777763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d2cbpa_	96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	9e-40
d2cbpa_	96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	3e-07
d1ws8a_	104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	3e-39
d1ws8a_	104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	4e-08
d1jera_	110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	2e-37
d1jera_	110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	1e-08
d1f56a_	91	b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera	1e-36
d1paza_	120	b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, s	0.001

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  130 bits (328), Expect = 9e-40
 Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 25  HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
           +VVG + GW           +W   + F  GD L+FN+    H+V  V Q  F+ CNT +
Sbjct: 3   YVVGGSGGWTFN------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56

Query: 85  PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
                T+    + L   G  YFIC+FPGHC  G K+A+N 
Sbjct: 57  GAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVNA 95

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
           A +VVGG+ GWT         ++W +   F  GDIL
Sbjct: 1   AVYVVGGSGGWTFN------TESWPKGKRFRAGDIL 30

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score =  129 bits (325), Expect = 3e-39
 Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
           T H VGD+ GW         Y+ WA++  F VGD+L+FN+    H+V +V Q  F +CN+
Sbjct: 3   TVHKVGDSTGWTTLVP--YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 83  TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           +SP +  T+   S+ L   G  YF+C  PGHC  GQK+ I V
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score = 47.7 bits (113), Expect = 4e-08
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
             H VG + GWT        Y  WA +N F VGD L
Sbjct: 3   TVHKVGDSTGWTTLVPYD--YAKWASSNKFHVGDSL 36

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  124 bits (313), Expect = 2e-37
 Identities = 50/106 (47%), Positives = 64/106 (60%), Gaps = 3/106 (2%)

Query: 23  TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACN 81
           T H+VGD  GW VP + P  YS WAA +TF VGD+L FNF A  H+V  + T+ SF+ACN
Sbjct: 4   TVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62

Query: 82  TTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126
             +  +    + P    L   G HYF+C+   HC  GQKL+INV A
Sbjct: 63  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVA 108

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
             H+VG   GW+VP + +  Y  WA    F VGD L
Sbjct: 4   TVHIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSL 38

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  122 bits (307), Expect = 1e-36
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 31  LGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTT 90
           +GW       +   N A  ++F  GD LVF +  G H+V  V    + +C+        +
Sbjct: 5   IGW-------SFNVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57

Query: 91  NSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
           +    + LT  G +YFICSFPGHC GG K+AIN 
Sbjct: 58  SGQDRIKLTR-GQNYFICSFPGHCGGGMKIAINA 90

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Length = 120

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 51  TFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSF 110
               GDT+ F      H+V  +                  N    +T+T  G +   C+ 
Sbjct: 24  KANPGDTVTFIPVDKGHNVESIKDMIPEG---AEKFKSKINENYVLTVTQPGAYLVKCTP 80

Query: 111 PGHCLGGQKLAINV 124
             H   G    I V
Sbjct: 81  --HYAMGMIALIAV 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1ws8a_	104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	100.0
d2cbpa_	96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1jera_	110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1f56a_	91	Plantacyanin {Spinach (Spinacia oleracea) [TaxId:	99.96
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	99.11
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	99.0
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	98.99
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	98.94
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	98.93
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	98.92
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	98.89
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	98.89
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	98.87
d1ws8a_	104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	98.79
d1jera_	110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	98.78
d2cbpa_	96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	98.78
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	98.78
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.75
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	98.73
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.73
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.51
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	98.5
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	98.31
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	98.02
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	97.76
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	97.68
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	97.34
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	97.27
d1nwpa_	128	Azurin {Pseudomonas putida [TaxId: 303]}	97.04
d1jzga_	128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	96.89
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	96.39
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	96.12
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	95.78
d1ikop_	141	Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId:	95.69
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	95.66
d1shxa1	138	Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	95.48
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	95.24
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	94.56
d2q9oa1	162	Laccase {Melanocarpus albomyces [TaxId: 204285]}	91.9
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	91.64
d2bw4a1	157	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	91.33
d1gyca1	130	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	91.15
d1hfua1	131	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	90.32
d1v10a1	136	Laccase {Rigidoporus lignosus [TaxId: 219653]}	83.29

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=1.4e-36  Score=232.39  Aligned_cols=102  Identities=42%  Similarity=0.854  Sum_probs=96.7

Q ss_pred             ceEEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccC
Q 026789           22 QTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTAS  101 (233)
Q Consensus        22 ~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~  101 (233)
                      +++|+|||++||++++  ..+|++|+++++|+|||+|+|+|..+.|+|+||++++|+.|+..+++..+++|.+.|+|+++
T Consensus         2 at~~~VGg~~gW~~~~--~~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~   79 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP   79 (104)
T ss_dssp             CCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred             CcEEEeCCcCccCcCC--CcCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEecC
Confidence            4689999999999865  45799999999999999999999999999999999999999999999989999999999999


Q ss_pred             CCeeEecCCCCCCCCCCeeeEEec
Q 026789          102 GPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus       102 G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      |.+||||++++||++||||.|+|.
T Consensus        80 g~~yF~C~~~~HC~~Gmkl~I~V~  103 (104)
T d1ws8a_          80 GTFYFLCGIPGHCQLGQKVEIKVD  103 (104)
T ss_dssp             EEEEEECCSTTTTTTTCEEEEEEC
T ss_pred             ccEEEECCCcchhhCCCEEEEEEC
Confidence            999999999999999999999995

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=2.9e-36  Score=227.45  Aligned_cols=95  Identities=38%  Similarity=0.774  Sum_probs=90.9

Q ss_pred             EEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCC
Q 026789           24 RHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGP  103 (233)
Q Consensus        24 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~  103 (233)
                      .|+|||+.||++      +|++||++++|++||+|+|+|.++.|+|+||++++|++|+.++++..+++|++.|+|++ |.
T Consensus         2 ~y~VGg~~GW~~------~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~-G~   74 (96)
T d2cbpa_           2 VYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQ   74 (96)
T ss_dssp             EEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCS-EE
T ss_pred             EEEcCCCCCCCc------CHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCcccccCCCeEEEeCC-CC
Confidence            589999999986      69999999999999999999999999999999999999999999999999999999986 99


Q ss_pred             eeEecCCCCCCCCCCeeeEEec
Q 026789          104 HYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus       104 ~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +||||++++||+.||||+|+|.
T Consensus        75 ~YFic~~~~hC~~G~Kl~V~Vl   96 (96)
T d2cbpa_          75 SYFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEEECCSTTTGGGTCEEEEEEC
T ss_pred             CEEEeCCCCcCcCCCEEEEEEC
Confidence            9999999999999999999984

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=1.4e-34  Score=223.00  Aligned_cols=106  Identities=47%  Similarity=0.858  Sum_probs=95.2

Q ss_pred             cceEEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEE-cCCCCCcCCCCCCCCcCCCC-CceEEe
Q 026789           21 AQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNACNTTSPLSRTTNS-PASVTL   98 (233)
Q Consensus        21 a~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V-~~~~y~~C~~~~~~~~~~~G-~~~v~l   98 (233)
                      .+++|+|||+.||+++.+ ..+|++|+++++|+|||+|+|+|..++|+|+|| ++++|+.|+..+++....++ ...++|
T Consensus         2 ~at~~~VGg~~gW~~~~~-~~~Y~~Wa~~~~f~vGD~l~F~~~~~~H~V~~v~~~~~y~~c~~~~~~~~~~~~~~~~~~l   80 (110)
T d1jera_           2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL   80 (110)
T ss_dssp             CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred             cceEEEeCCCCCcccCCC-cchhhhhhcCCcEeCCCEEEEEeCCCCceEEEECCcccccccccCCccccccCCCcEEEEe
Confidence            357899999999999763 456999999999999999999999999999999 68999999999988765544 577899


Q ss_pred             ccCCCeeEecCCCCCCCCCCeeeEEecCC
Q 026789           99 TASGPHYFICSFPGHCLGGQKLAINVSAR  127 (233)
Q Consensus        99 ~~~G~~yFic~~~~hC~~Gmk~~I~V~~~  127 (233)
                      +++|++||||++++||++||||+|+|..+
T Consensus        81 ~~~G~~yF~C~~~~HC~~Gmk~~I~V~~a  109 (110)
T d1jera_          81 DELGMHYFVCTVGTHCSNGQKLSINVVAA  109 (110)
T ss_dssp             CSSEEEEEECCSTTTGGGTCEEEEEEECC
T ss_pred             cCCccEEEECCCcChhhcCCEEEEEEecC
Confidence            99999999999999999999999999864

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.96  E-value=1.1e-30  Score=194.94  Aligned_cols=86  Identities=40%  Similarity=0.807  Sum_probs=81.3

Q ss_pred             CCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCC
Q 026789           32 GWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFP  111 (233)
Q Consensus        32 GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~  111 (233)
                      ||++       |.+||++++|+|||+|+|+|.++.|+|+||++++|+.|+..+++..+++|++.|+|++ |.+||||+++
T Consensus         6 GW~~-------~~~Wa~~~~F~vGD~LvF~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~-g~~yfic~~~   77 (91)
T d1f56a_           6 GWSF-------NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYFICSFP   77 (91)
T ss_dssp             ECSS-------SCBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECCS-EEEEEECCST
T ss_pred             CCcc-------ccccccCCCCcCCCEEEEEEcCCCCEEEEECHHHhCcCCCCCCcccccCCCeEEEeCC-CCeEEEeCCC
Confidence            5985       5679999999999999999999999999999999999999999999999999999974 9999999999


Q ss_pred             CCCCCCCeeeEEec
Q 026789          112 GHCLGGQKLAINVS  125 (233)
Q Consensus       112 ~hC~~Gmk~~I~V~  125 (233)
                      +||++||||.|+|.
T Consensus        78 ~HC~~Gmkl~I~V~   91 (91)
T d1f56a_          78 GHCGGGMKIAINAK   91 (91)
T ss_dssp             TTTTTTCEEEEEEC
T ss_pred             CcCccCCEEEEEEC
Confidence            99999999999984

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=99.11  E-value=8.4e-11  Score=86.25  Aligned_cols=87  Identities=23%  Similarity=0.315  Sum_probs=58.3

Q ss_pred             EEEecCCCC-CccCCCCCCCccccccCeeeeeCCEEEEEecCCC-ceEEEEcCCCCCcCCCCC---------CCCcCCCC
Q 026789           24 RHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNACNTTS---------PLSRTTNS   92 (233)
Q Consensus        24 ~~~VGg~~G-W~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~-H~V~~V~~~~y~~C~~~~---------~~~~~~~G   92 (233)
                      +++||.++| ..+.+          +.+++++||+|.|.+..+. |++.....   +.+....         ........
T Consensus         2 eV~vg~~~g~~~F~P----------~~i~v~~GdtV~f~n~~~~~h~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   68 (99)
T d1bypa_           2 EVLLGSSDGGLAFVP----------SDLSIASGEKITFKNNAGFPHNDLFDKK---EVPAGVDVTKISMPEEDLLNAPGE   68 (99)
T ss_dssp             EEEESCTTSCCSEES----------SEEEECTTEEEEEEECSSCCBCCEECTT---SSCTTCCHHHHSCCTTCCBCSTTC
T ss_pred             EEEEEecCCceEEcC----------CEEEECCCCEEEEEECCCCceeEEEecC---CCCCccccccCcccccccccCCCc
Confidence            567887643 55433          5789999999999987654 66665321   1111111         00011122


Q ss_pred             CceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           93 PASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        93 ~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ...++++++|.|||+|..  ||+.||+..|.|+
T Consensus        69 ~~~~tf~~~G~y~y~C~~--H~~~GM~G~I~V~   99 (99)
T d1bypa_          69 EYSVTLTEKGTYKFYCAP--HAGAGMVGKVTVN   99 (99)
T ss_dssp             EEEEEECSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             eEEEEecCCceEEEEECc--CCCCCCEEEEEEC
Confidence            367889999999999985  9999999999985

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=99.00  E-value=3.7e-10  Score=82.63  Aligned_cols=88  Identities=18%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             EEEecCCCC-CccCCCCCCCccccccCeeeeeCCEEEEEecCCC-ceEEEEcCCCCCcCCCCCCC------CcCCCCCce
Q 026789           24 RHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNACNTTSPL------SRTTNSPAS   95 (233)
Q Consensus        24 ~~~VGg~~G-W~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~-H~V~~V~~~~y~~C~~~~~~------~~~~~G~~~   95 (233)
                      .+.||.++| ..+.|          +.+++++||+|.|.+..+. |+++.....  ..+......      .........
T Consensus         3 ~V~vg~~~g~~~F~P----------~~i~i~~GdtV~f~n~~~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   70 (98)
T d1iuza_           3 IVKLGGDDGSLAFVP----------SKISVAAGEAIEFVNNAGFPHNIVFDEDA--VPAGVDADAISYDDYLNSKGETVV   70 (98)
T ss_dssp             EEEESCTTSCCSEES----------SEEEECTTCEEEEEECSSCCEEEEECTTS--SCTTCCHHHHCEEEEECSTTCEEE
T ss_pred             EEEEecCCCcEEEeC----------CEEEECCCCEEEEEECCCCcccEEEeCCC--cccccccccccccCcccCCCcEEE
Confidence            566887654 44433          5789999999999887554 777663221  111111100      011122357


Q ss_pred             EEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           96 VTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        96 v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ++++++|.|||+|..  ||..||+..|.|.
T Consensus        71 ~~f~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d1iuza_          71 RKLSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             EECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EecCCCceEEEEeCC--CccCCCeEEEEEC
Confidence            889999999999984  9999999999984

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=98.99  E-value=2.2e-10  Score=84.22  Aligned_cols=90  Identities=18%  Similarity=0.307  Sum_probs=58.5

Q ss_pred             EEEecCCCC-CccCCCCCCCccccccCeeeeeCCEEEEEecCCC-ceEEEEcCCCCCcCCC---------CCCCCcCCCC
Q 026789           24 RHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNACNT---------TSPLSRTTNS   92 (233)
Q Consensus        24 ~~~VGg~~G-W~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~-H~V~~V~~~~y~~C~~---------~~~~~~~~~G   92 (233)
                      ++.||.+.| ..+.+          +..++++||+|.|.+..+. |+++.......+....         .+........
T Consensus         2 ~V~vg~~~g~~~F~P----------~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (102)
T d1kdja_           2 KVEVGDEVGNFKFYP----------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP   71 (102)
T ss_dssp             EEEESCTTCCCCEES----------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC
T ss_pred             EEEEeecCCceEEeC----------CEEEECCCCEEEEEECCCCceeEEEecCCCCCcccccccccCcccccccccCCcc
Confidence            456776543 44432          5789999999999987654 7777643222111110         0001111122


Q ss_pred             CceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           93 PASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        93 ~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ...++++++|.|+|+|..  ||+.||+..|.|.
T Consensus        72 ~~~~~f~~~G~y~Y~C~~--H~~~GM~G~I~Ve  102 (102)
T d1kdja_          72 SFKAKVSTPGTYTFYCTP--HKSANMKGTLTVK  102 (102)
T ss_dssp             EEEECCCSCEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEEEeeCCCceEEEEecC--CcccCCeEEEEEC
Confidence            357888999999999985  9999999999984

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=98.94  E-value=6e-10  Score=85.42  Aligned_cols=74  Identities=22%  Similarity=0.192  Sum_probs=56.4

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCc--CCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSR--TTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~--~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +..++++||+|.|.+..+.|+|..+.....+.     ....  .......++++.+|.|+|+|+.  ||..||+..|.|.
T Consensus        21 ~~itI~~GDTV~f~n~~~~Hnv~~~~~~~~~~-----~~~~~~~~~~~~s~tF~~~G~y~Y~Ctp--H~~~GM~G~I~Vg   93 (120)
T d1paza_          21 AYIKANPGDTVTFIPVDKGHNVESIKDMIPEG-----AEKFKSKINENYVLTVTQPGAYLVKCTP--HYAMGMIALIAVG   93 (120)
T ss_dssp             SEEEECTTCEEEEEESSSSCCCEECTTCSCTT-----CCCCBCCTTCCEEEECCSCEEEEEECTT--TGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEeeCCCcceEeeccccCccc-----ccccccccCceEEEEecCCCeEEEEEee--CCCCCCEEEEEEC
Confidence            57899999999999998889998764332221     1111  1123478999999999999985  9999999999998


Q ss_pred             CCC
Q 026789          126 ARG  128 (233)
Q Consensus       126 ~~~  128 (233)
                      ...
T Consensus        94 ~~~   96 (120)
T d1paza_          94 DSP   96 (120)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            753

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=98.93  E-value=8.3e-10  Score=81.39  Aligned_cols=90  Identities=20%  Similarity=0.247  Sum_probs=59.7

Q ss_pred             EEEecCCC-CCccCCCCCCCccccccCeeeeeCCEEEEEecCCC-ceEEEEcCCCCCc-C----CCCCCCCcCCCC-Cce
Q 026789           24 RHVVGDAL-GWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNA-C----NTTSPLSRTTNS-PAS   95 (233)
Q Consensus        24 ~~~VGg~~-GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~-H~V~~V~~~~y~~-C----~~~~~~~~~~~G-~~~   95 (233)
                      +++||.++ +..+.|          +.+++++||+|+|.+..+. |+|+......... .    ...........| ...
T Consensus         2 ~V~~g~d~g~~~F~P----------~~iti~~GdtV~f~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~   71 (99)
T d1plca_           2 DVLLGADDGSLAFVP----------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE   71 (99)
T ss_dssp             EEEESCTTCCSCEES----------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEE
T ss_pred             EEEEEeCCCceEEeC----------CEEEECCCCEEEEEECCCCCccEEEccCcCCCccccccCcccccccccCCCceEE
Confidence            46777553 455533          5789999999999887654 9998652221110 0    001111111223 367


Q ss_pred             EEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           96 VTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        96 v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ++++++|.|+|+|.  .|+..||+..|.|+
T Consensus        72 ~tF~~~G~y~Y~C~--pH~~~GM~G~I~V~   99 (99)
T d1plca_          72 VALSNKGEYSFYCS--PHQGAGMVGKVTVN   99 (99)
T ss_dssp             EECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             EecCCCceEEEEeC--CCcCCCcEEEEEEC
Confidence            88999999999997  59999999999984

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.92  E-value=6.1e-10  Score=81.26  Aligned_cols=87  Identities=23%  Similarity=0.223  Sum_probs=56.9

Q ss_pred             EEEecCCC-CCccCCCCCCCccccccCeeeeeCCEEEEEecCCC-ceEEEEcCCCCCcCCCCCC-------CCcCCCCCc
Q 026789           24 RHVVGDAL-GWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNACNTTSP-------LSRTTNSPA   94 (233)
Q Consensus        24 ~~~VGg~~-GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~-H~V~~V~~~~y~~C~~~~~-------~~~~~~G~~   94 (233)
                      ++.||.+. +..+.+          +.+++++||+|.|.+.... |+++.....   .|.....       .........
T Consensus         3 TV~vg~~~g~~~F~P----------~~i~v~~GdtV~f~n~~~~~h~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~t~   69 (98)
T d2plta_           3 TVKLGADSGALEFVP----------KTLTIKSGETVNFVNNAGFPHNIVFDEDA---IPSGVNADAISRDDYLNAPGETY   69 (98)
T ss_dssp             EEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECGGG---SCTTCCHHHHCEEEEECSTTCEE
T ss_pred             EEEEeeCCCceEEeC----------CEEEECCCCEEEEEECCCCceeEEEecCC---ccccccCCcccccccccCCCceE
Confidence            45677553 344433          6799999999999887655 555543221   2221110       001112246


Q ss_pred             eEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           95 SVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        95 ~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      .++++++|.|||+|..  ||+.||+..|.|.
T Consensus        70 ~~tf~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d2plta_          70 SVKLTAAGEYGYYCEP--HQGAGMVGKIIVQ   98 (98)
T ss_dssp             EEECCSCEEEEEECGG--GGGGTCEEEEEEC
T ss_pred             EEEecCCceEEEEeCc--CCCCCCEEEEEEC
Confidence            7888999999999984  9999999999984

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=98.89  E-value=1.9e-09  Score=79.37  Aligned_cols=90  Identities=22%  Similarity=0.221  Sum_probs=55.0

Q ss_pred             EEEecCCCC-CccCCCCCCCccccccCeeeeeCCEEEEEecCCC-ceEEEEcCCCCCcCCCCCC-----CCcC-CCCCce
Q 026789           24 RHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNACNTTSP-----LSRT-TNSPAS   95 (233)
Q Consensus        24 ~~~VGg~~G-W~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~-H~V~~V~~~~y~~C~~~~~-----~~~~-~~G~~~   95 (233)
                      ++.||.++| ..+.+          +.+++++||+|.|.+..+. |+++..+............     .... ......
T Consensus         4 tV~v~~~~g~~~F~P----------~~i~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (105)
T d2cj3a1           4 TVKLGSDKGLLVFEP----------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTS   73 (105)
T ss_dssp             EEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECSSSSTTCCHHHHHHHCEEEEECSTTCEEE
T ss_pred             EEEEEeCCCceEEeC----------CEEEECCCCEEEEEECCCCceeeEeccCCCCccccccCCcccccccccCCCcceE
Confidence            445666543 55533          5789999999999887655 6655542221111100000     0011 112345


Q ss_pred             EEe---ccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           96 VTL---TASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        96 v~l---~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +++   +++|.|||+|..  ||+.||+..|.|.
T Consensus        74 ~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~V~  104 (105)
T d2cj3a1          74 TTFPADAPAGEYTFYCEP--HRGAGMVGKITVA  104 (105)
T ss_dssp             EECCTTCCSEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EEEEeccCCceEEEEeCC--CcCCCcEEEEEEe
Confidence            554   468999999985  9999999999985

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=98.89  E-value=1.5e-09  Score=83.01  Aligned_cols=76  Identities=18%  Similarity=0.163  Sum_probs=55.2

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEecCC
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~~  127 (233)
                      +.+++++||+|.|.+..+.|+++.+....  .... ..........+.++++++|.|+|+|..  ||..||+..|.|..+
T Consensus        21 ~~itI~~GdtV~f~n~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vg~~   95 (123)
T d1adwa_          21 AFVRAEPGDVINFVPTDKSHNVEAIKEIL--PEGV-ESFKSKINESYTLTVTEPGLYGVKCTP--HFGMGMVGLVQVGDA   95 (123)
T ss_dssp             SEEEECTTEEEEEEESSSSCCCEECTTSC--CTTC-CCCBCCTTCCEEEEECSCEEEEEECGG--GGGGTCEEEEEESSS
T ss_pred             CEEEECCCCEEEEEeCCCCcceecccCcc--cccc-ccccccCCcceEEeccCCCeEEEEEcc--CCCCCCEEEEEECCC
Confidence            57899999999999998888877642211  1110 111112233468999999999999995  999999999999765


Q ss_pred             C
Q 026789          128 G  128 (233)
Q Consensus       128 ~  128 (233)
                      .
T Consensus        96 ~   96 (123)
T d1adwa_          96 P   96 (123)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=98.87  E-value=4e-09  Score=76.81  Aligned_cols=90  Identities=27%  Similarity=0.249  Sum_probs=58.1

Q ss_pred             eEEEecCCCC-CccCCCCCCCccccccCeeeeeCCEEEEEecCC-CceEEEEcC-C--CCCcCCCCCCCCcCCCCCceEE
Q 026789           23 TRHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQ-S--SFNACNTTSPLSRTTNSPASVT   97 (233)
Q Consensus        23 ~~~~VGg~~G-W~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~-~H~V~~V~~-~--~y~~C~~~~~~~~~~~G~~~v~   97 (233)
                      .++.+|.+++ -.+.|          +.+++++||+|.|.+..+ .|+++.... .  +........ .....+....++
T Consensus         3 ~~v~~g~~~~~~~F~P----------~~i~V~~GdtV~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t   71 (97)
T d2jxma1           3 VQIKMGTDKYAPLYEP----------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK-LAIAPGSFYSVT   71 (97)
T ss_dssp             EEEEEEETTTEEEEES----------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC-CCCSCSCCEEEE
T ss_pred             EEEEEccCCCceEEcC----------CEEEECCCCEEEEEECCCcceeEEEecCCCccccccccccc-cccCcceEEEEe
Confidence            4566776543 33332          578999999999998764 455554322 1  111111111 111122346889


Q ss_pred             eccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           98 LTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        98 l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ++++|.|||+|+.  ||..||+..|.|.
T Consensus        72 f~~~G~y~Y~C~~--H~~~GM~G~I~Ve   97 (97)
T d2jxma1          72 LGTPGTYSFYCTP--HRGAGMVGTITVE   97 (97)
T ss_dssp             CCSCSEEEEECSS--TTTTTCEEEEEEC
T ss_pred             cCCCeEEEEEEcc--CCCCCCEEEEEEC
Confidence            9999999999984  9999999999984

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=98.79  E-value=5.2e-10  Score=83.73  Aligned_cols=36  Identities=42%  Similarity=0.759  Sum_probs=32.2

Q ss_pred             CceeeecCCCCccCCCCCCcchhccccCCcccCCceec
Q 026789          195 PATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILG  232 (233)
Q Consensus       195 ~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~L~  232 (233)
                      +++|+|||+.||+++.+  .+|.+|+++++|+|||+|+
T Consensus         2 at~~~VGg~~gW~~~~~--~~Y~~Wa~~~~f~vGD~l~   37 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLVP--YDYAKWASSNKFHVGDSLL   37 (104)
T ss_dssp             CCEEETTGGGCSCSSSC--CCHHHHHHTSCBCTTCEEE
T ss_pred             CcEEEeCCcCccCcCCC--cCHHHHhhCCcCCCCCEEE
Confidence            68899999999998643  4699999999999999996

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=98.78  E-value=5.6e-10  Score=84.13  Aligned_cols=38  Identities=42%  Similarity=0.859  Sum_probs=33.6

Q ss_pred             CCceeeecCCCCccCCCCCCcchhccccCCcccCCceec
Q 026789          194 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILG  232 (233)
Q Consensus       194 a~~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~L~  232 (233)
                      .++.|+|||+.||+++.+ ..+|.+|+++++|+|||+|+
T Consensus         2 ~at~~~VGg~~gW~~~~~-~~~Y~~Wa~~~~f~vGD~l~   39 (110)
T d1jera_           2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQ   39 (110)
T ss_dssp             CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEE
T ss_pred             cceEEEeCCCCCcccCCC-cchhhhhhcCCcEeCCCEEE
Confidence            478999999999999854 45799999999999999995

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=98.78  E-value=7e-10  Score=81.99  Aligned_cols=31  Identities=45%  Similarity=0.866  Sum_probs=28.6

Q ss_pred             ceeeecCCCCccCCCCCCcchhccccCCcccCCceec
Q 026789          196 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILG  232 (233)
Q Consensus       196 ~~~~VG~~~GW~~~~~~~~~Y~~Wa~~~~F~vGD~L~  232 (233)
                      +.|+|||+.||+++      |++||++++|+|||+|+
T Consensus         1 A~y~VGg~~GW~~~------y~~Wa~~~~F~vGD~Lv   31 (96)
T d2cbpa_           1 AVYVVGGSGGWTFN------TESWPKGKRFRAGDILL   31 (96)
T ss_dssp             CEEETTGGGCSCSS------CTTTTTTCCBCTTCEEE
T ss_pred             CEEEcCCCCCCCcC------HHHHhCCCcEecCCEEE
Confidence            47999999999875      99999999999999996

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=98.78  E-value=6.3e-09  Score=79.97  Aligned_cols=75  Identities=23%  Similarity=0.218  Sum_probs=55.1

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEecCC
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~~  127 (233)
                      +.+++++||+|.|.+....|++..+....-  +.. ............++++++|.|+|+|.  -||..||+..|.|...
T Consensus        21 ~~itI~~GdTV~w~n~~~~~~~~~~~~~~p--~~~-~~~~~~~~~~~s~Tf~~~G~Y~Y~C~--pH~~~GM~G~IvVgd~   95 (124)
T d1bqka_          21 ASLKVAPGDTVTFIPTDKGHNVETIKGMIP--DGA-EAFKSKINENYKVTFTAPGVYGVKCT--PHYGMGMVGVVQVGDA   95 (124)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTTCSC--TTC-CCCBCCTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEESSS
T ss_pred             CEEEECCCCeEEEEECCCCcccccccccCC--Ccc-ccccccCCccEEEecCCCceEEEEec--cCcCCCCEEEEEECCC
Confidence            578999999999999887888876532211  111 11111223457899999999999998  4999999999999764

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=98.75  E-value=4.6e-09  Score=77.25  Aligned_cols=90  Identities=20%  Similarity=0.184  Sum_probs=56.3

Q ss_pred             EEEecCCCC-CccCCCCCCCccccccCeeeeeCCEEEEEecCC-CceEEEEcCCCCCcCCCCCC-----CCcCCCC-Cce
Q 026789           24 RHVVGDALG-WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG-NHDVTRVTQSSFNACNTTSP-----LSRTTNS-PAS   95 (233)
Q Consensus        24 ~~~VGg~~G-W~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~-~H~V~~V~~~~y~~C~~~~~-----~~~~~~G-~~~   95 (233)
                      ++.||.+.| ..+.+          +..++++||+|.|.+..+ .|+++.........+...+.     ......| ...
T Consensus         4 tV~vg~~~g~~~F~P----------~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   73 (105)
T d2q5ba1           4 TVKMGADSGLLQFEP----------ANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYE   73 (105)
T ss_dssp             EEEESCTTSCSSEES----------SEEEECTTEEEEEEECSSCCEEEEECGGGSGGGCHHHHHHHCEEEEECSTTCEEE
T ss_pred             EEEEecCCCceEEeC----------CEEEECCCCEEEEEECCCCCceeEeecCcccccccccCCccccccccccCCceEE
Confidence            455776544 55433          578999999999987654 47877653322122211100     1112233 234


Q ss_pred             EEe---ccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           96 VTL---TASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        96 v~l---~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +++   +++|.|||+|..  ||+.||+..|.|.
T Consensus        74 ~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~Ve  104 (105)
T d2q5ba1          74 ITFSSDFPAGTYTYYCAP--HRGAGMVGKITVE  104 (105)
T ss_dssp             EEECTTSCSEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEEEeccCCceEEEEeCC--CCCCCCEEEEEEc
Confidence            444   357999999984  9999999999985

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=98.73  E-value=1.4e-08  Score=77.58  Aligned_cols=76  Identities=20%  Similarity=0.254  Sum_probs=54.4

Q ss_pred             cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEecCC
Q 026789           48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR  127 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~~  127 (233)
                      +.+++++||+|.|.+..+.|.++.+.....+.   .............++++.+|.|+|+|..  ||..||+..|.|..+
T Consensus        21 ~~ltV~~GDTV~f~n~d~~~h~~~~~~~~~~~---~~~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vgd~   95 (123)
T d1pmya_          21 ALVRLKPGDSIKFLPTDKGHNVETIKGMAPDG---ADYVKTTVGQEAVVKFDKEGVYGFKCAP--HYMMGMVALVVVGDK   95 (123)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTTSSCTT---CCCCBCCTTSCEEEECCSCEEEEEECST--TTTTTCEEEEEESSC
T ss_pred             CEEEECCCCEEEEeeCCCCcccccccccCccc---ccccccccccccccccCCCceEEEEecc--CCCCCCEEEEEECCC
Confidence            57899999999999987777776643221111   0111111233578999999999999985  999999999999765


Q ss_pred             C
Q 026789          128 G  128 (233)
Q Consensus       128 ~  128 (233)
                      .
T Consensus        96 ~   96 (123)
T d1pmya_          96 R   96 (123)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=98.73  E-value=2.7e-09  Score=78.29  Aligned_cols=74  Identities=15%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             cCeeeeeCCEEEEEecC-CCceEEEEcCCCCCcCCCCC----CCCcCCCC-CceEEeccCCCeeEecCCCCCCCCCCeee
Q 026789           48 ANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFNACNTTS----PLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLA  121 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~y~~C~~~~----~~~~~~~G-~~~v~l~~~G~~yFic~~~~hC~~Gmk~~  121 (233)
                      +.+++++||+|.|.+.. ..|+|+......  .++...    .......| ...++++++|.|+|+|..  |+..||+..
T Consensus        19 ~~i~v~~GdtV~~~n~~~~~H~~~~~~~~~--~~~~~~~~~~~~~~~~~g~t~~~tf~~~G~y~Y~C~~--H~~~gM~G~   94 (98)
T d1pcsa_          19 STVTIKAGEEVKWVNNKLSPHNIVFDADGV--PADTAAKLSHKGLLFAAGESFTSTFTEPGTYTYYCEP--HRGAGMVGK   94 (98)
T ss_dssp             SEEEECTTCEEEEEECSSCCEEEEECCSSS--CHHHHHHHCEEEEECSTTCEEEEECCSCEEEEEECGG--GTTTTCEEE
T ss_pred             CEEEECCCCEEEEeECCCCccceEEecccc--CCCccccccccccccCCCcEEEEeccCCceEEEEecc--CCCCCCEEE
Confidence            57899999999998764 459998742211  111100    00112333 468899999999999974  999999999


Q ss_pred             EEec
Q 026789          122 INVS  125 (233)
Q Consensus       122 I~V~  125 (233)
                      |.|.
T Consensus        95 I~Ve   98 (98)
T d1pcsa_          95 VVVE   98 (98)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=98.51  E-value=9.6e-08  Score=69.08  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=50.2

Q ss_pred             cCeeeeeCCEEEEEecCCC-ceEEEEcCCCCCcCCCCCCCCcCCCC-CceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAAGN-HDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~~-H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +.+++.+||+|.|.+..+. |+++.....+...   . . .....| ...++++++|.|+|+|..  |+..||+..|.|.
T Consensus        19 ~~i~I~~GdtV~f~n~d~~~h~~~~~~~~~~~~---~-~-~~~~~g~~~~~tF~~~G~y~Y~C~~--H~~~gM~G~I~Ve   91 (91)
T d1bxua_          19 STIEIQAGDTVQWVNNKLAPHNVVVEGQPELSH---K-D-LAFSPGETFEATFSEPGTYTYYCEP--HRGAGMVGKIVVQ   91 (91)
T ss_dssp             SEEEECTTCEEEEEECSSCCEEEEETTCGGGCE---E-E-EECSTTCEEEEECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             CEEEECCCCEEEEEECCcCCceEEecccccccc---c-c-cccCCCCCEEEEeccCceEEEEeCC--CCCCCCEEEEEEC
Confidence            6789999999999986544 6665432211110   0 0 112233 468899999999999985  9999999999984

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.50  E-value=1.4e-07  Score=72.73  Aligned_cols=76  Identities=22%  Similarity=0.468  Sum_probs=51.0

Q ss_pred             cCeeeeeCCEEEEEecCC-----CceEEEEcCCCCCcCC---------------CCCC-----C---CcCCCC---CceE
Q 026789           48 ANQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACN---------------TTSP-----L---SRTTNS---PASV   96 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-----~H~V~~V~~~~y~~C~---------------~~~~-----~---~~~~~G---~~~v   96 (233)
                      +..+++.||+|.|.|.+.     .|+++.+...+  .+.               ...+     +   .....|   ...|
T Consensus        32 ~~i~v~aG~~V~~~~~N~~~~~~~Hn~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~t~~~~pg~s~~i~f  109 (139)
T d1qhqa_          32 TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGD--DVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTF  109 (139)
T ss_dssp             SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSH--HHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEE
T ss_pred             CeEEECCCCEEEEEEeCCcccceeEEEeecccch--hhHHHHHHhhhccchhccccCCCcccccccccccCCcceEEEEE
Confidence            578999999999988653     39998863211  110               0000     0   001111   1245


Q ss_pred             EeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           97 TLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        97 ~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +..++|.|.|+|++.+||+.||+..|.|.
T Consensus       110 ~~~~~G~y~f~Ct~pgH~~~GM~G~i~V~  138 (139)
T d1qhqa_         110 RTPAPGTYLYICTFPGHYLAGMKGTLTVT  138 (139)
T ss_dssp             ECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             ecCCCeEEEEEcCCcCcccccCeEEEEEc
Confidence            56789999999999999999999999985

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=4.4e-07  Score=66.96  Aligned_cols=70  Identities=21%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             cCeeeeeCCEEEEEecC-CCceEEEEcCCCCC-cCCCCCCCCcCCC-CCceEEeccCCCeeEecCCCCCCCCCCeeeEEe
Q 026789           48 ANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFN-ACNTTSPLSRTTN-SPASVTLTASGPHYFICSFPGHCLGGQKLAINV  124 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~y~-~C~~~~~~~~~~~-G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V  124 (233)
                      +.+++++||+|.|.+.. ..|+|.......-+ ..+.    ..... +...++++++|.|+|+|+.  |  .||+..|.|
T Consensus        33 ~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~~~~----~~~~~g~~~~~tf~~pG~y~y~C~~--H--~~M~G~I~V  104 (105)
T d2ov0a1          33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKG----PMMKKEQAYSLTFTEAGTYDYHCTP--H--PFMRGKVVV  104 (105)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC----CCBCTTEEEEEEECSCEEEEEECSS--C--TTCEEEEEE
T ss_pred             CEEEECCCCEEEEEECCCCceeEEEecccCCcccccc----cccCCCceEEEEecCCeEEEEEecC--C--CCCEEEEEE
Confidence            56899999999998764 45999876322111 1111    11222 3468899999999999997  5  699999988


Q ss_pred             c
Q 026789          125 S  125 (233)
Q Consensus       125 ~  125 (233)
                      .
T Consensus       105 e  105 (105)
T d2ov0a1         105 E  105 (105)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=98.02  E-value=4.8e-06  Score=61.17  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=47.8

Q ss_pred             cCeeeeeCCEEEEEecC-CCceEEEEcCC-CCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           48 ANQTFTVGDTLVFNFAA-GNHDVTRVTQS-SFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~-~~H~V~~V~~~-~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      +.+++++||+|.|.+.. ..|+|...... ..+.-+  .. .........++++++|.|+|+|+.  |  .||+..|.|.
T Consensus        34 ~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~f~--s~-~~~~~~~~~~tf~~~G~y~y~C~~--H--~~M~G~I~Ve  106 (106)
T d1id2a_          34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFR--GE-MMTKDQAYAITFNEAGSYDYFCTP--H--PFMRGKVIVE  106 (106)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEE--CC-CBCTTEEEEEEECSCEEEEEECSS--C--TTCEEEEEEC
T ss_pred             CEEEECCCCEEEEEECCCCceeEEeccccCCccccc--cc-ccCCCceEEEecCCCeEEEEEccC--C--CCCEEEEEEC
Confidence            56899999999998754 46998764211 111100  00 111122468899999999999997  5  5999999884

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=97.76  E-value=2.9e-05  Score=59.14  Aligned_cols=78  Identities=17%  Similarity=0.280  Sum_probs=49.2

Q ss_pred             cCeee-eeCCEEEEEecCC--------CceEEEEcCCCCCc--------------CCCCCC-C----CcCCCC-CceEEe
Q 026789           48 ANQTF-TVGDTLVFNFAAG--------NHDVTRVTQSSFNA--------------CNTTSP-L----SRTTNS-PASVTL   98 (233)
Q Consensus        48 ~~~~f-~vGD~L~F~y~~~--------~H~V~~V~~~~y~~--------------C~~~~~-~----~~~~~G-~~~v~l   98 (233)
                      +.+++ +.|..|.|.|.+.        .||++.++..+.+.              =..... +    .....| ...|++
T Consensus        18 ~~i~V~k~G~~V~l~~~N~g~l~h~~m~hn~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~via~t~~l~pget~~i~f   97 (129)
T d2ccwa1          18 KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTF   97 (129)
T ss_dssp             SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEE
T ss_pred             ceEEEecCCCEEEEEEEcCCcCchheeeccccccCcccHHHHHHHHHHhhhccccCCCccccccccccccCCCceEEEEE
Confidence            45666 5799999988753        29988874432211              000111 0    111222 345555


Q ss_pred             -----ccCCCeeEecCCCCCCCCCCeeeEEecC
Q 026789           99 -----TASGPHYFICSFPGHCLGGQKLAINVSA  126 (233)
Q Consensus        99 -----~~~G~~yFic~~~~hC~~Gmk~~I~V~~  126 (233)
                           +++|.|.|+|++++| ..||+..|.|.+
T Consensus        98 ~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~~  129 (129)
T d2ccwa1          98 DVSKIAAGENYAYFCSFPGH-WAMMKGTLKLGS  129 (129)
T ss_dssp             EGGGSCTTCCEEEECCSTTG-GGTSEEEEEECC
T ss_pred             EecccCCCccEEEEeCCCCh-hhCcEEEEEEcC
Confidence                 457999999999999 589999999863

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=97.68  E-value=2.8e-05  Score=59.32  Aligned_cols=31  Identities=23%  Similarity=0.553  Sum_probs=25.8

Q ss_pred             ceEEec-----cCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           94 ASVTLT-----ASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        94 ~~v~l~-----~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ..|+++     ++|.|.|+|++++| ..||+..|.|.
T Consensus        93 ~~i~f~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~  128 (129)
T d1cuoa_          93 TSVKFKVSALSKDEAYTYFCSYPGH-FSMMRGTLKLE  128 (129)
T ss_dssp             EEEEEEGGGCCTTSCEEEECCSTTC-TTTSEEEEEEE
T ss_pred             ceEEEEccccCCCceEEEEeCCCCc-ccCcEEEEEEe
Confidence            456553     58999999999999 58999999885

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.34  E-value=7.8e-05  Score=55.07  Aligned_cols=69  Identities=14%  Similarity=0.145  Sum_probs=46.1

Q ss_pred             cCeeeeeCCEEEEEecC---CCceEEEEcCCCCCc-CCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCC-CCeeeE
Q 026789           48 ANQTFTVGDTLVFNFAA---GNHDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG-GQKLAI  122 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~---~~H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~-Gmk~~I  122 (233)
                      +.++++.||.|.|.+.+   -.|++..-   ++.. .+    +....+....++++++|.|+|+|..  ||.. ||+..|
T Consensus        38 ~~i~v~~Gd~V~~~~~n~d~~~H~~~i~---~~~~~~~----~~pG~t~~~~f~~~~~G~y~y~C~~--~~~~~~M~G~i  108 (112)
T d1ibya_          38 ETLVVKKGDAVKVVVENKSPISEGFSID---AFGVQEV----IKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGTL  108 (112)
T ss_dssp             CEEEEETTCEEEEEEEECSSSCEEEEEG---GGTEEEE----ECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEEE
T ss_pred             CEEEEeCCCEEEEEEEeCCCCceeeeec---ccccccc----cCCcceEEEEEEeccceEEEEECcc--cChhhcCeEEE
Confidence            46899999999988753   24887752   2211 11    0001112356777899999999996  8875 599999


Q ss_pred             Eec
Q 026789          123 NVS  125 (233)
Q Consensus       123 ~V~  125 (233)
                      .|.
T Consensus       109 ~V~  111 (112)
T d1ibya_         109 NVV  111 (112)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=97.27  E-value=0.00016  Score=55.58  Aligned_cols=77  Identities=21%  Similarity=0.387  Sum_probs=48.0

Q ss_pred             CeeeeeCCEEEEEecCC----CceEEEEcCC-CCCcCCCCCC-------CCcCCCC-Cc--eEEe-ccCCCeeEecCCCC
Q 026789           49 NQTFTVGDTLVFNFAAG----NHDVTRVTQS-SFNACNTTSP-------LSRTTNS-PA--SVTL-TASGPHYFICSFPG  112 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~----~H~V~~V~~~-~y~~C~~~~~-------~~~~~~G-~~--~v~l-~~~G~~yFic~~~~  112 (233)
                      .++++.||+|.|++.+.    .|+....... .+..=+....       ......| ..  .+++ +.+|.|||.|.+.+
T Consensus        61 ti~v~~Gd~V~i~v~N~~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~~~  140 (153)
T d1e30a_          61 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPG  140 (153)
T ss_dssp             EEEECTTCEEEEEEEECCTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEECCCSEEEEEECCSTT
T ss_pred             eEEEeCCCEEEEEEEeCCCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEeCCCCeEEEEeCCchh
Confidence            36789999999998542    3777665221 2211110000       0011122 23  3443 56899999999999


Q ss_pred             CCCCCCeeeEEec
Q 026789          113 HCLGGQKLAINVS  125 (233)
Q Consensus       113 hC~~Gmk~~I~V~  125 (233)
                      |=+.||...|.|.
T Consensus       141 H~~~GM~G~iiVe  153 (153)
T d1e30a_         141 HAATGQFGKIVVK  153 (153)
T ss_dssp             TTTTTCEEEEEEC
T ss_pred             HHHCCCEEEEEEC
Confidence            9999999999873

>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas putida [TaxId: 303]

Probab=97.04  E-value=0.0008  Score=50.86  Aligned_cols=31  Identities=39%  Similarity=0.583  Sum_probs=25.6

Q ss_pred             ceEEe-----ccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           94 ASVTL-----TASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        94 ~~v~l-----~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ..+++     +++|.|-|+|++++|= +||+..+.|.
T Consensus        93 ~~i~f~~p~~~~~G~Y~f~Ct~PGH~-~~M~G~l~V~  128 (128)
T d1nwpa_          93 DSVTFDVSKLAAGEKYGFFCSFPGHI-SMMKGTVTLK  128 (128)
T ss_dssp             EEEEEEGGGSCTTSCEEEECCSTTCG-GGSEEEEEEC
T ss_pred             eEEEEEecccCCCceEEEEECCCCcc-cCceEEEEEC
Confidence            45555     3569999999999997 8999999873

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.89  E-value=0.00066  Score=51.34  Aligned_cols=31  Identities=32%  Similarity=0.591  Sum_probs=26.1

Q ss_pred             ceEEe-----ccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789           94 ASVTL-----TASGPHYFICSFPGHCLGGQKLAINVS  125 (233)
Q Consensus        94 ~~v~l-----~~~G~~yFic~~~~hC~~Gmk~~I~V~  125 (233)
                      ..|++     +++|.|-|+|++++|= .||+..|.|.
T Consensus        93 ~~i~f~~p~~~~~G~Y~f~Ct~PGH~-~gM~G~l~Ve  128 (128)
T d1jzga_          93 DSVTFDVSKLKEGEQYMFFCTFPGHS-ALMKGTLTLK  128 (128)
T ss_dssp             EEEEEEGGGCCTTCCEEEECCSTTGG-GTSEEEEEEC
T ss_pred             EEEEEEeeccCCCceEEEEECCCCcc-cccEEEEEEC
Confidence            45655     4679999999999998 8999999883

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.39  E-value=0.0018  Score=48.99  Aligned_cols=69  Identities=14%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             cCeeeeeCCEEEEEecCC------CceEEEEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCCCCCCC-CC
Q 026789           48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGHCL-GG  117 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~------~H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~~~hC~-~G  117 (233)
                      ..++++.||.|.|++.+.      .|....   ..+..      ......|   ...|+.+++|.|+|+|+...|=. .|
T Consensus        52 ~~i~V~~Gd~V~~~ltN~d~~~~v~H~~~i---~~~~~------~~~~~PG~~~~~~F~a~~~G~y~~~C~~~cg~~H~~  122 (132)
T d1fwxa1          52 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTM---GNYGV------AMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHME  122 (132)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEE---TTTTE------EEEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTT
T ss_pred             CEEEEcCCCEEEEEEEcCCCCccceEeech---hhhcc------ccccCCCEEEEEEEeCCCCeEEEEECccccCcchhc
Confidence            457888999999998652      255443   12211      0011123   24677789999999999643332 58


Q ss_pred             CeeeEEec
Q 026789          118 QKLAINVS  125 (233)
Q Consensus       118 mk~~I~V~  125 (233)
                      |+..|.|.
T Consensus       123 M~G~iiVe  130 (132)
T d1fwxa1         123 MRGRMLVE  130 (132)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEE
Confidence            99999885

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=96.12  E-value=0.006  Score=45.43  Aligned_cols=67  Identities=19%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             cCeeeeeCCEEEEEecCC--CceEEEEcCCCCCcCCCCCCCCcCCCCC---ceEEeccCCCeeEecCC---CCCCCCCCe
Q 026789           48 ANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSF---PGHCLGGQK  119 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~--~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~l~~~G~~yFic~~---~~hC~~Gmk  119 (233)
                      +..++..||.|.|+..+.  .|+....   +|..-      .....|.   ..++.+++|.|+|+|+.   .+|  .+|+
T Consensus        47 ~~l~vp~G~~V~~~lts~DV~H~f~ip---~~~v~------~d~~PG~~~~~~~~~~~~G~y~~~C~~~CG~~H--~~M~  115 (122)
T d2cuaa_          47 NPIEVPQGAEIVFKITSPDVIHGFHVE---GTNIN------VEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMF  115 (122)
T ss_dssp             SSEEEETTSEEEEEEEBSSSCEEEEET---TSSCE------EEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCE
T ss_pred             CEEEEeCCCEEEEEEEcCCccceeEec---CCCee------EEEecCceEEEEEEeccceeEEEEehhccCCCc--ccCe
Confidence            568999999999998753  4777541   22110      0011222   45677899999999996   355  4799


Q ss_pred             eeEEec
Q 026789          120 LAINVS  125 (233)
Q Consensus       120 ~~I~V~  125 (233)
                      ..|.|.
T Consensus       116 g~i~V~  121 (122)
T d2cuaa_         116 GTIVVK  121 (122)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888875

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.78  E-value=0.0049  Score=46.46  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=44.5

Q ss_pred             cCeeeeeCCEEEEEecCC------CceEEEEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCCCCCCC-CC
Q 026789           48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGHCL-GG  117 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~------~H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~~~hC~-~G  117 (233)
                      ..++++.||.|.|+..+.      .|+....   ++..      .....-|   ...++.+++|.|+|+|+..-|=. .+
T Consensus        51 ~~i~V~~Gd~V~~~vtn~~~s~Dv~H~f~ip---~~~v------~~~~~PG~t~~~~f~~~~~G~y~~~C~~~cg~~H~~  121 (131)
T d1qnia1          51 TDFKVKEGDEVTVYITNLDMVEDVTHGFCMV---NHGV------SMEISPQQTASVTFTAGKPGVYWYYCNWFCHALHME  121 (131)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEET---TTTE------EEEECTTCEEEEEEECCSSEEEEEECCSCCSTTGGG
T ss_pred             ceEEecCCCEEEEEEEccCCCCcceEEEEEe---ccCc------ccccCCCceEEEEEEcCCCEEEEEECccccCcchhc
Confidence            467899999999987631      2555541   2211      0011223   35678899999999999632211 47


Q ss_pred             CeeeEEecC
Q 026789          118 QKLAINVSA  126 (233)
Q Consensus       118 mk~~I~V~~  126 (233)
                      |+..|.|..
T Consensus       122 M~g~i~Vep  130 (131)
T d1qnia1         122 MVGRMLVEA  130 (131)
T ss_dssp             CEEEEEEEC
T ss_pred             CeeEEEEEe
Confidence            999998864

>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-b2 ectodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.0019  Score=49.67  Aligned_cols=77  Identities=16%  Similarity=0.230  Sum_probs=49.2

Q ss_pred             eeeeeCCEEEE---EecCC------CceEEEEcCCCCCcCCCCCC-CCcCC----CCC--------------ceEEeccC
Q 026789           50 QTFTVGDTLVF---NFAAG------NHDVTRVTQSSFNACNTTSP-LSRTT----NSP--------------ASVTLTAS  101 (233)
Q Consensus        50 ~~f~vGD~L~F---~y~~~------~H~V~~V~~~~y~~C~~~~~-~~~~~----~G~--------------~~v~l~~~  101 (233)
                      +.+++||.|-+   +|..+      ...+++|++++|+.|+.... ...+.    .+.              ..+++..-
T Consensus        24 i~V~i~D~ldIiCP~y~~~~~~~~E~~~lY~V~~e~y~~C~~~~~~~~~~~C~~P~~~~kft~kFQ~fsP~~lG~EF~pG  103 (141)
T d1ikop_          24 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKN  103 (141)
T ss_dssp             ECCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTT
T ss_pred             EEeccCCEEEEECCCCCCCCCCcceEEEEEEECHHHhCcccCCCCCcEEEEeCCCCCCeEEEEEEeecCCCCCCeeecCC
Confidence            56688999988   55432      47788999999999997542 22111    111              22333322


Q ss_pred             CCeeEecCCCC-----------CCCC-CCeeeEEecC
Q 026789          102 GPHYFICSFPG-----------HCLG-GQKLAINVSA  126 (233)
Q Consensus       102 G~~yFic~~~~-----------hC~~-Gmk~~I~V~~  126 (233)
                      -.||||++-.+           -|.. .|||.|.|..
T Consensus       104 ~~YY~IstS~g~~~gl~~~~gg~C~t~~MKl~i~V~~  140 (141)
T d1ikop_         104 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQ  140 (141)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             CeEEEEEcCCCCCCccccccCCccCCCccEEEEEeCC
Confidence            35778887533           3864 8999999864

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=95.66  E-value=0.0055  Score=46.97  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=47.6

Q ss_pred             cCeeeeeCCEEEEEecCC-----CceEEEEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCCCC---CCCC
Q 026789           48 ANQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPG---HCLG  116 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~~~---hC~~  116 (233)
                      -.++++.||+|++++.+.     -|.+-.-...  +.-.. .......-|   ..+++.+++|.+||.|....   |=..
T Consensus        58 P~i~v~~Gd~v~v~~~N~~~~~~~H~~~~h~~~--~~~~~-~~~~~i~PG~t~~y~f~a~~~Gt~~YH~H~~~~~~h~~~  134 (151)
T d1kbva1          58 RMIRVREGDTVEVEFSNNPSSTVPHNVDFHAAT--GQGGG-AAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIAN  134 (151)
T ss_dssp             CBEEEETTCEEEEEEEECTTCSSCBCCEETTCC--SGGGG-TTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred             CeEEEECCCEEEEEEEcCCCCceeeeccccccc--cCCCC-cceeeeCCCCEEEEEEeCCCCeEEEEECCCCChHHHHhC
Confidence            457899999999998652     2454431000  00000 000011223   35677789999999999654   6678


Q ss_pred             CCeeeEEecCCC
Q 026789          117 GQKLAINVSARG  128 (233)
Q Consensus       117 Gmk~~I~V~~~~  128 (233)
                      ||...|.|....
T Consensus       135 Gm~G~liV~p~~  146 (151)
T d1kbva1         135 GMYGLILVEPKE  146 (151)
T ss_dssp             TCEEEEEEECTT
T ss_pred             CCEEEEEEECCC
Confidence            998888886543

>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-a5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0063  Score=46.51  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             CeeeeeCCEEEE---EecC-------CCceEEEEcCCCCCcCCCCCCC-CcC-------CCCCce--------------E
Q 026789           49 NQTFTVGDTLVF---NFAA-------GNHDVTRVTQSSFNACNTTSPL-SRT-------TNSPAS--------------V   96 (233)
Q Consensus        49 ~~~f~vGD~L~F---~y~~-------~~H~V~~V~~~~y~~C~~~~~~-~~~-------~~G~~~--------------v   96 (233)
                      .+.+++||.|-+   +|..       ....+++|++++|+.|+..+.. ..+       ..+...              +
T Consensus        22 ~i~V~i~D~ldIiCP~y~~~~~~~~~E~y~lY~Vs~e~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~fsP~~~G~  101 (138)
T d1shxa1          22 HIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGF  101 (138)
T ss_dssp             EEEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCC
T ss_pred             EEEeccCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEcCCCCCCCCCceEEEEEEEcCCCCCCe
Confidence            357889999988   5542       2477889999999999876432 111       122222              2


Q ss_pred             EeccCCCeeEecCC---CCCCCCCCeeeEEec
Q 026789           97 TLTASGPHYFICSF---PGHCLGGQKLAINVS  125 (233)
Q Consensus        97 ~l~~~G~~yFic~~---~~hC~~Gmk~~I~V~  125 (233)
                      ++..--.||||++-   +++|+ .|||.|.|-
T Consensus       102 EF~pG~~YY~ISTs~g~~~~~~-~mrLkv~V~  132 (138)
T d1shxa1         102 EFRPGREYFYISSAIPDNGRRS-CLKLKVFVR  132 (138)
T ss_dssp             CCCTTEEEEEEEEESSCCSCSC-CCEEEEEEC
T ss_pred             eecCCCEEEEEEeeCCCCCCcc-ceEeEEEEe
Confidence            33322357788763   34443 499999985

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=95.24  E-value=0.0069  Score=45.16  Aligned_cols=80  Identities=9%  Similarity=0.030  Sum_probs=48.6

Q ss_pred             cCeeeeeCCEEEEEecCC--C--ceEEEEcCCCCCcCCCCCCCC-----cCCCC---CceEEeccCCCeeEecCCCCCCC
Q 026789           48 ANQTFTVGDTLVFNFAAG--N--HDVTRVTQSSFNACNTTSPLS-----RTTNS---PASVTLTASGPHYFICSFPGHCL  115 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~--~--H~V~~V~~~~y~~C~~~~~~~-----~~~~G---~~~v~l~~~G~~yFic~~~~hC~  115 (233)
                      -.+.++.||+|++++.+.  .  +++.-- .-.+......+...     ....|   ...+.++.+|++||.|-+..|=.
T Consensus        34 P~i~v~~GD~v~i~l~N~l~~~~~~iH~H-g~~~~~~~~~~~~~~~~~~~I~PG~s~~y~f~a~~~Gt~~YH~H~~~h~~  112 (129)
T d1aoza1          34 PTIRANAGDSVVVELTNKLHTEGVVIHWH-GILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRS  112 (129)
T ss_dssp             CCEEEETTCEEEEEEEECCSSCCBCEEEE-TCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred             CeEEEECCcEEEEEEEeCCCCCCeeeeec-cceeeccCccccccccccceECCCCEEEEEEECCCCCceEEecCCHHHHh
Confidence            457899999999988753  1  222111 00011111111100     01223   24677789999999999999999


Q ss_pred             CCCeeeEEecCCC
Q 026789          116 GGQKLAINVSARG  128 (233)
Q Consensus       116 ~Gmk~~I~V~~~~  128 (233)
                      .||-..|.|....
T Consensus       113 ~Gm~G~~iV~~~~  125 (129)
T d1aoza1         113 AGLYGSLIVDPPQ  125 (129)
T ss_dssp             GTCEEEEEEECCT
T ss_pred             CCCEEEEEEcCCC
Confidence            9999888886543

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=94.56  E-value=0.016  Score=44.81  Aligned_cols=76  Identities=16%  Similarity=0.200  Sum_probs=45.5

Q ss_pred             CeeeeeCCEEEEEecCCC-----ceEEEEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCCC----CCCCC
Q 026789           49 NQTFTVGDTLVFNFAAGN-----HDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFP----GHCLG  116 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~~-----H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~~----~hC~~  116 (233)
                      .++++.||+|++++.+..     |++..=.......   .........|   ...++++++|.+||.|...    .|-..
T Consensus        66 tI~v~~Gd~v~v~~~N~~~~~h~h~ih~hg~~~~~~---g~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~~~~~~~q~~~  142 (159)
T d1oe2a1          66 TLVVHEGDYVQLTLVNPATNAMPHNVEFHGATGALG---GAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS  142 (159)
T ss_dssp             CEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG---GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred             eEEEECCcEEEEEEECCCccccccceeeccccCCCC---CcccccCCCCCeEEEEEEcCCCceEEEEeCCCCCchhHHhC
Confidence            478999999999997631     4553310000000   0000111223   3567788999999999743    35568


Q ss_pred             CCeeeEEecCC
Q 026789          117 GQKLAINVSAR  127 (233)
Q Consensus       117 Gmk~~I~V~~~  127 (233)
                      ||-..|.|...
T Consensus       143 Gl~G~liV~p~  153 (159)
T d1oe2a1         143 GMSGTLMVLPR  153 (159)
T ss_dssp             TCEEEEEEECT
T ss_pred             CCEEEEEEECC
Confidence            99888888543

>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=91.90  E-value=0.063  Score=41.27  Aligned_cols=35  Identities=11%  Similarity=0.171  Sum_probs=30.2

Q ss_pred             ceEEeccCCCeeEecCCCCCCCCCCeeeEEecCCC
Q 026789           94 ASVTLTASGPHYFICSFPGHCLGGQKLAINVSARG  128 (233)
Q Consensus        94 ~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~~~  128 (233)
                      ..+..+.+|++||-|-...|=..||-..|.|....
T Consensus       125 y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~~iV~~p~  159 (162)
T d2q9oa1         125 YRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPA  159 (162)
T ss_dssp             EEEECCSCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred             eeecCCCCEEEEeecCCHHHHhCCCEEEEEECCCC
Confidence            35677899999999999999999999999997654

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.64  E-value=0.067  Score=40.73  Aligned_cols=76  Identities=16%  Similarity=0.174  Sum_probs=45.0

Q ss_pred             CeeeeeCCEEEEEecCC-----CceEEE-E-cCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCC-----CCCC
Q 026789           49 NQTFTVGDTLVFNFAAG-----NHDVTR-V-TQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPG-----HCLG  116 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~-----~H~V~~-V-~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~-----hC~~  116 (233)
                      .++++.||.|++++.+.     .|+.-. . ...+....  ...+.-..+-...+.++.+|.+||.|.+..     |=..
T Consensus        63 ti~v~~Gd~v~i~~~N~~~~~~~H~~~~h~~~~~~~~~~--~~~i~PG~t~ty~f~a~~~Gt~~YH~H~~~~~~~~h~~~  140 (153)
T d1mzya1          63 LMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGG--LTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS  140 (153)
T ss_dssp             EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGG--GCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred             cEEEeCCCEEEEEEEcCCCCceEccCccccCCcCCCCCc--cccccCCCEEEEEEEcCCCceEEEEeCCcccccHhHHhC
Confidence            46899999999998752     244433 1 11110000  001111111135677889999999998643     5578


Q ss_pred             CCeeeEEecC
Q 026789          117 GQKLAINVSA  126 (233)
Q Consensus       117 Gmk~~I~V~~  126 (233)
                      ||-..|.|..
T Consensus       141 Gm~G~~iV~P  150 (153)
T d1mzya1         141 GMAGCIMVLP  150 (153)
T ss_dssp             TCEEEEEEEC
T ss_pred             CCEEEEEEec
Confidence            9988888753

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=91.33  E-value=0.037  Score=42.51  Aligned_cols=77  Identities=13%  Similarity=0.118  Sum_probs=45.0

Q ss_pred             CeeeeeCCEEEEEecCCC-----ceEEEEcCCCCCcCCC-CCCCCcCCCCCceEEeccCCCeeEecCCC----CCCCCCC
Q 026789           49 NQTFTVGDTLVFNFAAGN-----HDVTRVTQSSFNACNT-TSPLSRTTNSPASVTLTASGPHYFICSFP----GHCLGGQ  118 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~~-----H~V~~V~~~~y~~C~~-~~~~~~~~~G~~~v~l~~~G~~yFic~~~----~hC~~Gm  118 (233)
                      .++++.||+|++++.+..     |.+..- ......... ...+.-..+-...++.+++|.+||.|-..    .|=..||
T Consensus        65 ~I~v~~GD~V~i~l~N~~~~~~~Hg~~~h-~~~~~~~~~~~~~i~PGet~ty~f~a~~pGt~~YH~H~~~~~~~h~~~Gl  143 (157)
T d2bw4a1          65 LMVVHENDYVELRLINPDTNTLLHNIDFH-AATGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM  143 (157)
T ss_dssp             EEEEETTCEEEEEEEECTTCCSCBCCEET-TSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTC
T ss_pred             eEEEECCcEEEEEEEeCCCCcceEeeeec-ccCCCcCCcceeeECcCCEEeEEEECCCCccceEEECCCCchHHHHhCCC
Confidence            478999999999987521     444331 010000000 00111111113567788999999999843    3557899


Q ss_pred             eeeEEecC
Q 026789          119 KLAINVSA  126 (233)
Q Consensus       119 k~~I~V~~  126 (233)
                      ...+.|..
T Consensus       144 ~G~~iV~p  151 (157)
T d2bw4a1         144 NGAIMVLP  151 (157)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            88888853

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=91.15  E-value=0.086  Score=39.10  Aligned_cols=78  Identities=9%  Similarity=0.101  Sum_probs=46.7

Q ss_pred             cCeeeeeCCEEEEEecCC--------CceEEEE----cCCC-CCcCCCCCCCCcCCCC-C--ceEEec-cCCCeeEecCC
Q 026789           48 ANQTFTVGDTLVFNFAAG--------NHDVTRV----TQSS-FNACNTTSPLSRTTNS-P--ASVTLT-ASGPHYFICSF  110 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~--------~H~V~~V----~~~~-y~~C~~~~~~~~~~~G-~--~~v~l~-~~G~~yFic~~  110 (233)
                      -.+.++.||+|++++.+.        .|++---    .... .+...... ......| .  ..+.+. .+|.+||.|-.
T Consensus        34 PtI~~~~GD~v~v~~~N~~~~~~~~~~~~iH~HG~~~~~~~~~d~~~~~s-~~~i~PG~s~~Y~~~~~~~~Gt~wYH~H~  112 (130)
T d1gyca1          34 PLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVN-QCPIASGHSFLYDFHVPDQAGTFWYHSHL  112 (130)
T ss_dssp             CCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTT-BCCBCTTEEEEEEEECSSCCEEEEEEECS
T ss_pred             CeEEEECCeEEEEEEEecCCCcccCCceeEEeccccccccCCCCCccccc-cCCCCCCCeEEEEEECCCCCceeEEecCC
Confidence            357899999999998653        1333211    1111 11110000 0001222 2  345553 69999999999


Q ss_pred             CCCCCCCCeeeEEecC
Q 026789          111 PGHCLGGQKLAINVSA  126 (233)
Q Consensus       111 ~~hC~~Gmk~~I~V~~  126 (233)
                      ..|-..||...|.|..
T Consensus       113 ~~~~~~Gl~G~liV~~  128 (130)
T d1gyca1         113 STQYCDGLRGPFVVYD  128 (130)
T ss_dssp             TTGGGGTCEEEEEEEC
T ss_pred             HHHHhCCCEEEEEEeC
Confidence            9999999999988864

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=90.32  E-value=0.12  Score=38.44  Aligned_cols=77  Identities=9%  Similarity=0.012  Sum_probs=45.3

Q ss_pred             CeeeeeCCEEEEEecCCC--------ceEEEEcCCCCCcCCCCCCC-----CcCCCC-Cce--EEe-ccCCCeeEecCCC
Q 026789           49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNACNTTSPL-----SRTTNS-PAS--VTL-TASGPHYFICSFP  111 (233)
Q Consensus        49 ~~~f~vGD~L~F~y~~~~--------H~V~~V~~~~y~~C~~~~~~-----~~~~~G-~~~--v~l-~~~G~~yFic~~~  111 (233)
                      .+.++.||+|++++.+..        |++--= .-.+..+...+..     .....| .+.  +.+ +..|.+||-|-..
T Consensus        35 ~I~v~~GD~v~v~l~N~l~~~~~~~~tsiH~H-Gl~~~~~~~~dgv~g~~~~~I~PG~~~~y~~~~~~~~Gt~wYH~H~~  113 (131)
T d1hfua1          35 LIRGGKNDNFELNVVNDLDNPTMLRPTSIHWH-GLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFG  113 (131)
T ss_dssp             EEEEETTCCEEEEEEECCCCTTSCCSBCEEEE-TCCCTTCGGGSCCBTTTBCCBCTTCEEEEEECCTTCCEEEEEEECST
T ss_pred             eEEEECCCEEEEEEEECCCCccccccceEEeC-CcccCCCCCCCCCcccccceECCCCeEEEEEeCCCCcceEEEecCCH
Confidence            478999999999886531        233110 0001111111111     011233 233  443 4689999999999


Q ss_pred             CCCCCCCeeeEEecC
Q 026789          112 GHCLGGQKLAINVSA  126 (233)
Q Consensus       112 ~hC~~Gmk~~I~V~~  126 (233)
                      .|-..||...|.|..
T Consensus       114 ~q~~~Gl~G~liV~~  128 (131)
T d1hfua1         114 TQYCDGLRGPMVIYD  128 (131)
T ss_dssp             TGGGGTCEEEEEEEC
T ss_pred             HHHhCCCEEEEEEcC
Confidence            999999999998865

>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]

Probab=83.29  E-value=0.61  Score=34.55  Aligned_cols=78  Identities=9%  Similarity=0.070  Sum_probs=46.4

Q ss_pred             cCeeeeeCCEEEEEecCC--------CceEEE----EcC-CCCCcCCCCCCCC-cCCCC-C--ceEEec-cCCCeeEecC
Q 026789           48 ANQTFTVGDTLVFNFAAG--------NHDVTR----VTQ-SSFNACNTTSPLS-RTTNS-P--ASVTLT-ASGPHYFICS  109 (233)
Q Consensus        48 ~~~~f~vGD~L~F~y~~~--------~H~V~~----V~~-~~y~~C~~~~~~~-~~~~G-~--~~v~l~-~~G~~yFic~  109 (233)
                      -.+.++.||.|+.++.+.        .++|--    +.. ...+.=  ....+ ....| .  ..+++. ..|++||-|-
T Consensus        34 P~i~~~~GD~v~v~~~N~l~~~~~~~~tsiH~HGl~~~~~~~~dgv--~~~t~~~I~PG~~~~Y~~~~~~~~Gt~wYH~H  111 (136)
T d1v10a1          34 PLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGP--AFVNQCPIIPNESFVYDFVVPGQAGTYWYHSH  111 (136)
T ss_dssp             CCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGGGSCC--BTTTBCCBCTTEEEEEEEECTTCCEEEEEEEC
T ss_pred             CeEEEECCcEEEEEEEeCCCCcccCcceeEEecccccccccccCCC--CccccceECCCCeEEEEEECCCCccceEEecC
Confidence            468899999999998763        122221    111 111110  00000 01223 2  355554 5899999999


Q ss_pred             CCCCCCCCCeeeEEecCC
Q 026789          110 FPGHCLGGQKLAINVSAR  127 (233)
Q Consensus       110 ~~~hC~~Gmk~~I~V~~~  127 (233)
                      ...|-..||...+.|...
T Consensus       112 ~~~q~~~GL~G~liV~~~  129 (136)
T d1v10a1         112 LSTQYCDGLRGAFVVYDP  129 (136)
T ss_dssp             STTGGGGTCEEEEEEECT
T ss_pred             chhHHhCCCEEEEEECCC
Confidence            998888999999988653