Citrus Sinensis ID: 026795


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MLCRMVTVPRKKKTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRSDDRVTEGEKKKLRSHSSRYSSSSDSVPRPQLSSCPTASAMRSSSRQRRCIPTSSTLVHSSSTSSLSLKL
ccccccccccccccccccEEEEEEEcccccHHHHHHcccccEEEEEEccEEEEEcccccccccEEEEcccccccccEEEEEEcccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccEEEEEEEEccHHHHHHHHHccEEEEccEEEEcEEEEEccccccccEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccEEEEEc
mlcrmvtvprkkktgsvpvylnvydltpmngYAYWLGLGIYhsgvqvhgveygfgahdhsttgifevepkqcpgftfrksiligrtdlgPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVclkltrkpiprWVNRLARLGFLCncvlpaglnetkvrqvrsddrvtegeKKKLRshssryssssdsvprpqlsscptasamrsssrqrrciptsstlvhssstsslslkl
mlcrmvtvprkkktgsvpvyLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKsiligrtdlgPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVlpaglnetkvrqvrsddrvtegekkklrshssryssssdsvprpqlsscptasamrsssrqrrciptsstlvhssstsslslkl
MLCRMVTVPRKKKTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRSDDRVTEGEKKKLrshssryssssdsvprpqlssCPTasamrsssrqrrCIPtsstlvhssstsslslKL
*************TGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNE*****************************************************************************
******************VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGL******************************************************************************L
MLCRMVTVPRKKKTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVR*************************************************************************
**************GSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVR*******************************************************************S*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLCRMVTVPRKKKTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRSDDRVTEGEKKKLRSHSSRYSSSSDSVPRPQLSSCPTASAMRSSSRQRRCIPTSSTLVHSSSTSSLSLKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q93VG8224 DeSI-like protein At4g174 no no 0.763 0.794 0.497 3e-53
Q5PQ09192 Desumoylating isopeptidas N/A no 0.635 0.770 0.385 2e-29
Q9D291194 Desumoylating isopeptidas yes no 0.630 0.757 0.375 2e-28
Q5ZIV7193 Desumoylating isopeptidas no no 0.622 0.751 0.386 2e-28
Q6DC39196 Desumoylating isopeptidas no no 0.626 0.744 0.377 4e-28
A3QRX8194 Desumoylating isopeptidas yes no 0.622 0.747 0.379 4e-28
Q5R456194 Desumoylating isopeptidas yes no 0.626 0.752 0.377 4e-28
Q9BSY9194 Desumoylating isopeptidas yes no 0.626 0.752 0.377 4e-28
Q5XIT6194 Desumoylating isopeptidas yes no 0.622 0.747 0.379 4e-28
Q8X1T0201 DeSI-like protein hag1 OS yes no 0.703 0.815 0.369 1e-23
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1 Back     alignment and function desciption
 Score =  208 bits (529), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 129/183 (70%), Gaps = 5/183 (2%)

Query: 10  RKKKTGSV---PVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFE 66
           R + +G     PVYLNVYDLTP+N Y YW G+GI+HSG++ H +EY +GAH++ T+G++E
Sbjct: 16  RDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYE 75

Query: 67  VEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLK 126
           VEP+ CPGF FR+S+L+G T +   + R++MEKL+ +Y G+TYHLI KNCNHF  +VCL+
Sbjct: 76  VEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQ 135

Query: 127 LTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRSDDRVTEGEKKKLRSHSSRYSSS 186
           LT KPIP W+NRLAR+G  CNC+LP  +  T V  +   +R+   ++ +  S +S  S  
Sbjct: 136 LTGKPIPGWINRLARVGSFCNCLLPESIQLTAVSAL--PERLEFSDEDESNSEASSVSDE 193

Query: 187 SDS 189
             S
Sbjct: 194 EGS 196





Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1 Back     alignment and function description
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1 Back     alignment and function description
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hag1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
255548792230 conserved hypothetical protein [Ricinus 0.987 1.0 0.785 2e-96
388519681226 unknown [Lotus japonicus] 0.969 1.0 0.741 2e-96
449455543234 PREDICTED: deSI-like protein At4g17486-l 1.0 0.995 0.717 6e-96
224143271232 predicted protein [Populus trichocarpa] 0.969 0.974 0.758 4e-94
224092562231 predicted protein [Populus trichocarpa] 0.978 0.987 0.739 4e-93
356515068224 PREDICTED: UPF0326 protein At4g17486 [Gl 0.961 1.0 0.706 4e-91
449441874234 PREDICTED: deSI-like protein At4g17486-l 0.987 0.982 0.708 6e-91
297808519218 hypothetical protein ARALYDRAFT_910561 [ 0.918 0.981 0.752 4e-90
356563918216 PREDICTED: UPF0326 protein At4g17486-lik 0.922 0.995 0.712 9e-90
217074716217 unknown [Medicago truncatula] gi|3884988 0.931 1.0 0.681 1e-88
>gi|255548792|ref|XP_002515452.1| conserved hypothetical protein [Ricinus communis] gi|223545396|gb|EEF46901.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 183/233 (78%), Positives = 202/233 (86%), Gaps = 3/233 (1%)

Query: 1   MLCRMVTVPRKKKTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHS 60
           MLCRMV + RKKKTG+VPVYLNVYDLTP+NGYAYWLGLGIYHSGVQVHGVEYGFGAHDHS
Sbjct: 1   MLCRMVLLQRKKKTGTVPVYLNVYDLTPINGYAYWLGLGIYHSGVQVHGVEYGFGAHDHS 60

Query: 61  TTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFC 120
           +TGIFEVEPKQCPGFTFRKSILIGRTDLGP+EVRAFMEKLA EYSGN+YHLITKNCNHFC
Sbjct: 61  STGIFEVEPKQCPGFTFRKSILIGRTDLGPKEVRAFMEKLAHEYSGNSYHLITKNCNHFC 120

Query: 121 NDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRSDDRVTEGEKKKLRSHS 180
           NDVC+KLT K IPRWVNRLARLGFLCNCVLPA LN+ KVRQVRS++    GEKKKLRS S
Sbjct: 121 NDVCIKLTGKTIPRWVNRLARLGFLCNCVLPAELNQAKVRQVRSENSRQLGEKKKLRSRS 180

Query: 181 SRYSSSSDSVPRPQLSSCPTASAMRSSSRQRRCIPTSSTLVHSSSTSSLSLKL 233
           SR  SSS +V  P L+SC + S  R S  ++RC P   ++V  SSTS+LSL+L
Sbjct: 181 SRLISSSTAVESPSLASCTSDSGSRIS--RQRC-PLPPSIVLDSSTSTLSLRL 230




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519681|gb|AFK47902.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449455543|ref|XP_004145512.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] gi|449521297|ref|XP_004167666.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224143271|ref|XP_002324900.1| predicted protein [Populus trichocarpa] gi|222866334|gb|EEF03465.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224092562|ref|XP_002309663.1| predicted protein [Populus trichocarpa] gi|222855639|gb|EEE93186.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515068|ref|XP_003526223.1| PREDICTED: UPF0326 protein At4g17486 [Glycine max] gi|255629247|gb|ACU14968.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449441874|ref|XP_004138707.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] gi|449499262|ref|XP_004160769.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297808519|ref|XP_002872143.1| hypothetical protein ARALYDRAFT_910561 [Arabidopsis lyrata subsp. lyrata] gi|297317980|gb|EFH48402.1| hypothetical protein ARALYDRAFT_910561 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356563918|ref|XP_003550204.1| PREDICTED: UPF0326 protein At4g17486-like [Glycine max] Back     alignment and taxonomy information
>gi|217074716|gb|ACJ85718.1| unknown [Medicago truncatula] gi|388498892|gb|AFK37512.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
TAIR|locus:2146970218 AT5G25170 "AT5G25170" [Arabido 0.755 0.807 0.848 2e-81
TAIR|locus:2040204240 AT2G25190 "AT2G25190" [Arabido 0.751 0.729 0.755 1.6e-72
TAIR|locus:2116667 680 AT4G31980 "AT4G31980" [Arabido 0.751 0.257 0.732 6.1e-71
TAIR|locus:2025752227 AT1G80690 "AT1G80690" [Arabido 0.746 0.766 0.670 2.9e-64
TAIR|locus:2202452279 AT1G47740 "AT1G47740" [Arabido 0.686 0.573 0.645 2.2e-57
TAIR|locus:2171524245 AT5G47310 "AT5G47310" [Arabido 0.622 0.591 0.602 2.1e-52
TAIR|locus:2129096224 AT4G17486 "AT4G17486" [Arabido 0.609 0.633 0.591 1.7e-50
UNIPROTKB|Q5ZIV7193 DESI2 "Desumoylating isopeptid 0.652 0.787 0.389 2.8e-27
UNIPROTKB|Q9BSY9194 DESI2 "Desumoylating isopeptid 0.652 0.783 0.383 2.8e-27
UNIPROTKB|A3QRX8194 DESI2 "Desumoylating isopeptid 0.652 0.783 0.383 2.8e-27
TAIR|locus:2146970 AT5G25170 "AT5G25170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 151/178 (84%), Positives = 161/178 (90%)

Query:     1 MLCRMVTVP-RKKKTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDH 59
             MLCRMV V  RKKK GSVPVYLNVYDLTP+NGYAYWLGLGIYHSGV+VHGVEYGFGAHDH
Sbjct:     1 MLCRMVVVTGRKKKPGSVPVYLNVYDLTPINGYAYWLGLGIYHSGVEVHGVEYGFGAHDH 60

Query:    60 STTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHF 119
             STTGIFEVEPKQCPGFTFRKSILIGRTDL P  VR FMEKLAEEYSGN+YHLITKNCNHF
Sbjct:    61 STTGIFEVEPKQCPGFTFRKSILIGRTDLDPENVRVFMEKLAEEYSGNSYHLITKNCNHF 120

Query:   120 CNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRS-DDRVTEGEKKKL 176
             CNDVC++LTR+ IP WVNRLAR G  CNCVLPA LNETKVRQVRS ++++ E EKKKL
Sbjct:   121 CNDVCVQLTRRSIPSWVNRLARFGLFCNCVLPAELNETKVRQVRSKEEKIPEVEKKKL 178




GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2040204 AT2G25190 "AT2G25190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116667 AT4G31980 "AT4G31980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025752 AT1G80690 "AT1G80690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202452 AT1G47740 "AT1G47740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171524 AT5G47310 "AT5G47310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129096 AT4G17486 "AT4G17486" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIV7 DESI2 "Desumoylating isopeptidase 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSY9 DESI2 "Desumoylating isopeptidase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A3QRX8 DESI2 "Desumoylating isopeptidase 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
pfam05903151 pfam05903, DUF862, PPPDE putative peptidase domain 4e-64
>gnl|CDD|218802 pfam05903, DUF862, PPPDE putative peptidase domain Back     alignment and domain information
 Score =  196 bits (499), Expect = 4e-64
 Identities = 74/149 (49%), Positives = 97/149 (65%), Gaps = 13/149 (8%)

Query: 17  VPVYLNVYDLTPMNG------YAYWLGL---GIYHSGVQVHGVEYGFGAHDHSTTGIFEV 67
            PV LNVYDL+P+NG          LG    GI+H+GV+V+GVEY FGAH +  +GIFE 
Sbjct: 1   HPVKLNVYDLSPINGGLARRYSPLLLGKQIEGIFHTGVEVYGVEYFFGAHTYEGSGIFEC 60

Query: 68  EPKQ-CPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLK 126
            P + CPGFT R+SI +G T+L   E R  +  L+EEY+G+TY+LI+KNCNHF +++C  
Sbjct: 61  PPGRTCPGFTPRESIELGETELTEEEFREILNSLSEEYTGDTYNLISKNCNHFTDELCQF 120

Query: 127 LTRKPIPRWVNRLARLGF---LCNCVLPA 152
           LT K IP W+NRL R         C+LP 
Sbjct: 121 LTGKKIPSWINRLPREVLSTPFGQCLLPM 149


The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p). Length = 151

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
KOG0324214 consensus Uncharacterized conserved protein [Funct 100.0
PF05903151 Peptidase_C97: PPPDE putative peptidase domain; In 100.0
PF04970125 LRAT: Lecithin retinol acyltransferase; InterPro: 95.43
PF05608136 DUF778: Protein of unknown function (DUF778); Inte 95.12
>KOG0324 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=7e-62  Score=424.43  Aligned_cols=169  Identities=63%  Similarity=1.107  Sum_probs=158.3

Q ss_pred             CCCcccEEEEEEeCCCCcchhHhhccceeeeeEEEeCeeEEecccCCCCCCcEEeCCCCCCCCceEEEEEeccccCCHHH
Q 026795           13 KTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPRE   92 (233)
Q Consensus        13 ~~~~~~V~LnVYDLs~~Ng~a~~lGlGIyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~resI~LG~T~lt~~e   92 (233)
                      .++.++|+|||||++++|+|++|+|+|||||||||||+||+||+|+++.+|||+++|+++|+++||++|.||.|++++++
T Consensus        10 ~~~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~   89 (214)
T KOG0324|consen   10 TNGRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDD   89 (214)
T ss_pred             cccceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHH
Confidence            33889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccccccccchhHHHHHHHHccCCCCChhhhhhhhhc--cccccCCCCCccccccccccc-ccc--
Q 026795           93 VRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLG--FLCNCVLPAGLNETKVRQVRS-DDR--  167 (233)
Q Consensus        93 ~~~~l~~L~~~f~g~tY~LL~rNCNHFS~~lc~~L~Gk~IP~wInRlA~iG--~~~~CvlP~~l~~t~vg~~~~-~~~--  167 (233)
                      |++||++|+++|+|++||||.||||||||++|++|+||+||+||||||++|  ++|+|++|.....|++.+... .++  
T Consensus        90 v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~~~~~p~~~~~t~~~~~~~~~~~~~  169 (214)
T KOG0324|consen   90 VRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLCNCLLPMLQNLTPVVLASSVVERFD  169 (214)
T ss_pred             HHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHHhhcchhhhcCCccccccccccccC
Confidence            999999999999999999999999999999999999999999999999999  999999999999999886663 333  


Q ss_pred             cchhhhhccccccc
Q 026795          168 VTEGEKKKLRSHSS  181 (233)
Q Consensus       168 ~~~~~~~~~~s~~~  181 (233)
                      .++.++++++|..+
T Consensus       170 ~~~~~~~~~~s~~s  183 (214)
T KOG0324|consen  170 EEENSKKKLASSGS  183 (214)
T ss_pred             ccccccccccccCC
Confidence            34455888888877



>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences Back     alignment and domain information
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes Back     alignment and domain information
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
2wp7_A168 Crystal Structure Of Desumoylase(Duf862) Length = 1 3e-06
3ebq_A170 Crystal Structure Of Human Pppde1 Length = 170 6e-06
>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862) Length = 168 Back     alignment and structure

Iteration: 1

Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 24/135 (17%) Query: 18 PVYLNVYDLTPMNGYAYWLG--------LGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEP 69 PV L VYDL+ G A L GI+H+ + VH E+ FG+ S+ Sbjct: 8 PVKLYVYDLS--KGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSSGISSC------- 58 Query: 70 KQCPGFTF----RKSILIGRTDLGPREVRAFMEKLAEE-YSGNTYHLITKNCNHFCNDVC 124 PG T + +G T++ ++ L E + G Y+L NCN F N+V Sbjct: 59 --TPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 116 Query: 125 LKLTRKPIPRWVNRL 139 LT + IP ++ L Sbjct: 117 QFLTGRKIPSYITDL 131
>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1 Length = 170 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
2wp7_A168 PPPDE peptidase domain-containing protein 2; hydro 7e-49
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Length = 168 Back     alignment and structure
 Score =  157 bits (397), Expect = 7e-49
 Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 15  GSVPVYLNVYDLTPMNGYAYWLGL--------GIYHSGVQVHGVEYGFGAHDHSTTGIFE 66
              PV L VYDL+   G A  L          GI+H+ + VH  E+ FG+      GI  
Sbjct: 5   NLYPVKLYVYDLS--KGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSS-----GISS 57

Query: 67  VEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEE-YSGNTYHLITKNCNHFCNDVCL 125
             P           + +G T++       ++  L E  + G  Y+L   NCN F N+V  
Sbjct: 58  CTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQ 117

Query: 126 KLTRKPIPRWVNRLAR------LGFLCNCVLP 151
            LT + IP ++  L         G      L 
Sbjct: 118 FLTGRKIPSYITDLPSEVLSTPFGQALRPFLD 149


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
2wp7_A168 PPPDE peptidase domain-containing protein 2; hydro 100.0
2lkt_A125 Retinoic acid receptor responder protein 3; TIG3, 93.58
4dpz_X137 HRAS-like suppressor 2; alpha/beta fold, enzyme ph 93.17
4dot_A140 Group XVI phospholipase A2; alpha/beta fold, phosp 93.0
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Back     alignment and structure
Probab=100.00  E-value=1.2e-50  Score=342.82  Aligned_cols=133  Identities=30%  Similarity=0.480  Sum_probs=119.1

Q ss_pred             CcccEEEEEEeCCCC-cch--hHhhcc---ceeeeeEEEeCeeEEecccCCCCCCcEEeCCCCCCCCceEEEEEeccccC
Q 026795           15 GSVPVYLNVYDLTPM-NGY--AYWLGL---GIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDL   88 (233)
Q Consensus        15 ~~~~V~LnVYDLs~~-Ng~--a~~lGl---GIyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~resI~LG~T~l   88 (233)
                      ++.+|+||||||++. |..  ..|+|+   |||||||||||+||+||+     +||+++.|+.++.++||++|+||.|++
T Consensus         5 ~~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~   79 (168)
T 2wp7_A            5 NLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEV   79 (168)
T ss_dssp             CCEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECC
T ss_pred             CCcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccC
Confidence            348999999999983 222  247897   999999999999999996     599999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhc-CCCCccccccccchhHHHHHHHHccCCCCChhhhhhhhhccccccCCCCCcccccccccc
Q 026795           89 GPREVRAFMEKLAEE-YSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVR  163 (233)
Q Consensus        89 t~~e~~~~l~~L~~~-f~g~tY~LL~rNCNHFS~~lc~~L~Gk~IP~wInRlA~iG~~~~CvlP~~l~~t~vg~~~  163 (233)
                      ++++|+++|++|+++ |++++||||.|||||||||+|++|+||+||+||||||+           .+++||+||++
T Consensus        80 ~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~-----------~vl~tp~G~~l  144 (168)
T 2wp7_A           80 TEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPS-----------EVLSTPFGQAL  144 (168)
T ss_dssp             CHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHH-----------HHHTSHHHHHH
T ss_pred             CHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHH-----------HHhcCcHHHHH
Confidence            999999999999998 99999999999999999999999999999999999766           44555555555



>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A Back     alignment and structure
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00