Citrus Sinensis ID: 026802

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRLR
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHEHccHHHEEEEHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
mkevhllppslkdlqfSRFLKNGFWLLTRVIAVTICVTLAASRaatlgsipmAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLyfgsgifskdvnVIHLIHIgipfvaatqpinslafvfdgvnfgasDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRLR
Flexible Loop (DISEMBL)
mkevhllppslkdlqFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDkslkqwkfgrqrlr
Low Complexity Region (SEG)
MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMgfilglglalvvglglyfgSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRLR
Disordered region (IsUnstruct)
**********LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKF******
Disordered Region (DISOPRED)
******LPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRL*
Disordered Region (DISEMBL)
MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRLR
Disordered Region (DISPRO)
*KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQ*L*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q9SFB0	526	MATE efflux family protei	yes	no	0.969	0.429	0.686	3e-86
Q9SYD6	515	MATE efflux family protei	no	no	0.918	0.415	0.644	3e-73
Q9SVE7	560	MATE efflux family protei	no	no	0.914	0.380	0.441	4e-45
Q84K71	521	MATE efflux family protei	no	no	0.905	0.404	0.423	3e-37

>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1

 Score =  318 bits (814), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 183/230 (79%), Gaps = 4/230 (1%)

Query: 2   KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQV 61
           K+V+L+PP+  DLQF RFLKNG  LL R IAVT C TLAA+ AA LG+ PMAAFQICLQV
Sbjct: 295 KKVNLIPPNFGDLQFGRFLKNGLLLLARTIAVTFCQTLAAAMAARLGTTPMAAFQICLQV 354

Query: 62  WLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFG 121
           WLTSSLL DGLAVAGQAILA +FAEKDY K T  A+RVLQMGF+LGLGL++ VGLGLYFG
Sbjct: 355 WLTSSLLNDGLAVAGQAILACSFAEKDYNKVTAVASRVLQMGFVLGLGLSVFVGLGLYFG 414

Query: 122 SGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIA 181
           +G+FSKD  VIHL+ IGIPF+AATQPINSLAFV DGVNFGASDF Y+AYSMV VA  SIA
Sbjct: 415 AGVFSKDPAVIHLMAIGIPFIAATQPINSLAFVLDGVNFGASDFAYTAYSMVGVAAISIA 474

Query: 182 SIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQR 231
           ++  ++K +GF+GIW+ALTIYM LR   G+ RM          W+F R R
Sbjct: 475 AVIYMAKTNGFIGIWIALTIYMALRAITGIARMA----TGTGPWRFLRGR 520

Citrate transporter responsible for loading citrate into xylem tissues, which helps facilitate iron transport to shoots.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2

 Score =  274 bits (701), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/214 (64%), Positives = 166/214 (77%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           M +V +   S K LQF RF+KNGF LL RVIAVT CVTL+AS AA  GS  MAAFQ+CLQ
Sbjct: 290 MGQVDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQ 349

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VWL +SLLADG AVAGQAILA AFA+KDYK+A   A+RVLQ+G +LG  LA+++G GL+F
Sbjct: 350 VWLATSLLADGYAVAGQAILASAFAKKDYKRAAATASRVLQLGLVLGFVLAVILGAGLHF 409

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G+ +F+KD  V+HLI IG+PFVA TQPIN+LAFVFDGVNFGASDF Y+A S+V+VAI SI
Sbjct: 410 GARVFTKDDKVLHLISIGLPFVAGTQPINALAFVFDGVNFGASDFGYAAASLVMVAIVSI 469

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRM 214
             +  LS   GF+G+W  LTIYM LR   G WR+
Sbjct: 470 LCLLFLSSTHGFIGLWFGLTIYMSLRAAVGFWRI 503

Citrate transporter critical for aluminum tolerance. Responsible for citrate exudation into the rhizosphere to protect roots from aluminum toxicity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 142/213 (66%)

Query: 2   KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQV 61
           K V LLPP +  L+F  +LK+G ++L R ++V + +T+A S AA  G   MAA QIC+QV
Sbjct: 330 KRVILLPPKIGSLKFGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQV 389

Query: 62  WLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFG 121
           WL  SLL D LA +GQA++A + +++D++      T VL++G + G+ LA+V+G+     
Sbjct: 390 WLAVSLLTDALASSGQALIASSASKRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSI 449

Query: 122 SGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIA 181
           +G+FSKD  V+ ++  G+ FVAATQPI +LAF+FDG+++G SDF Y+A SM++V   S A
Sbjct: 450 AGLFSKDPEVLRIVRKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACSMMVVGGISSA 509

Query: 182 SIFVLSKASGFVGIWVALTIYMGLRTFAGVWRM 214
            +       G  G+WV L+++MGLR  AG  R+
Sbjct: 510 FMLYAPAGLGLSGVWVGLSMFMGLRMVAGFSRL 542

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/215 (42%), Positives = 133/215 (61%), Gaps = 4/215 (1%)

Query: 2   KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQV 61
           + V LL P +K  + +++LK+G  L+ R +A+ +  TLA S AA  G   MA  QI L++
Sbjct: 291 ENVVLLSPQIKVGRANQYLKSGGLLIGRTVALLVPFTLATSLAAQNGPTQMAGHQIVLEI 350

Query: 62  WLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFG 121
           WL  SLL D LA+A Q++LA  +++ +YK+A      VLQ+G   G GLA V+ +     
Sbjct: 351 WLAVSLLTDALAIAAQSLLATTYSQGEYKQAREVLFGVLQVGLATGTGLAAVLFITFEPF 410

Query: 122 SGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIA 181
           S +F+ D  V+ +   G  FVA +QP+N+LAFV DG+ +G SDF ++AYSMV+V    I+
Sbjct: 411 SSLFTTDSEVLKIALSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIVGF--IS 468

Query: 182 SIFVLSKAS--GFVGIWVALTIYMGLRTFAGVWRM 214
           S+F+L  A   G  GIW  L ++M LR  AG WR+
Sbjct: 469 SLFMLVAAPTFGLAGIWTGLFLFMALRLVAGAWRL 503

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
255582775	546	DNA-damage-inducible protein f, putative	0.978	0.417	0.797	1e-97
425875107	546	multi drugs and toxic compounds exclusio	0.974	0.415	0.784	5e-97
224104069	525	predicted protein [Populus trichocarpa]	0.978	0.434	0.788	6e-97
224059630	509	predicted protein [Populus trichocarpa]	0.978	0.447	0.788	4e-96
449532501	469	PREDICTED: LOW QUALITY PROTEIN: MATE eff	0.978	0.486	0.725	4e-92
449436675	532	PREDICTED: MATE efflux family protein FR	0.978	0.428	0.725	7e-92
425875105	582	multi drugs and toxic compounds exclusio	0.978	0.391	0.728	1e-90
255582777	518	DNA-damage-inducible protein f, putative	0.978	0.440	0.745	2e-90
359487370	547	PREDICTED: MATE efflux family protein FR	0.974	0.414	0.805	3e-90
357457739	540	Ferric reductase defective 3b [Medicago	0.965	0.416	0.729	3e-89

>gi|255582775|ref|XP_002532163.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223528150|gb|EEF30216.1| DNA-damage-inducible protein f, putative [Ricinus communis]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/232 (79%), Positives = 198/232 (85%), Gaps = 4/232 (1%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           MK V LLPPS KDLQF RFLKNGF LL RVIA TICVTLAASRAA LGS  MAAFQICLQ
Sbjct: 317 MKNVDLLPPSPKDLQFGRFLKNGFLLLARVIAATICVTLAASRAARLGSTRMAAFQICLQ 376

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VWLTSSLLADGLAVAGQAI+A AFAEKDY+KAT AATRVLQM F+LGLGLA VVG+GL+F
Sbjct: 377 VWLTSSLLADGLAVAGQAIIACAFAEKDYQKATTAATRVLQMSFVLGLGLAAVVGIGLHF 436

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G GIFSKD NV+ +I IGIPFVAATQPINS+AFVFDGVNFGASDF YSAYSMVLVA+ASI
Sbjct: 437 GDGIFSKDPNVLDIISIGIPFVAATQPINSIAFVFDGVNFGASDFAYSAYSMVLVAVASI 496

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRL 232
           A+IFVLSK  GFVGIW+ALTI+MGLRTFAGVWRM          W F R +L
Sbjct: 497 AAIFVLSKTGGFVGIWIALTIFMGLRTFAGVWRM----GTGTGPWNFLRGKL 544

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|425875107|dbj|BAM68466.1| multi drugs and toxic compounds exclusion protein [Eucalyptus camaldulensis]

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 182/232 (78%), Positives = 202/232 (87%), Gaps = 5/232 (2%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           MK+V LLPPS+K+LQF RFLKNG  LL RVIAVT CVTLAAS+AA LGS PMAAFQICLQ
Sbjct: 314 MKQVDLLPPSIKELQFHRFLKNGVLLLARVIAVTFCVTLAASKAARLGSTPMAAFQICLQ 373

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VW+TSSLLADGLAVAGQAILA AFAEKDY KAT AA+RVLQMGF+LGLGLA+VVG+GL F
Sbjct: 374 VWMTSSLLADGLAVAGQAILASAFAEKDYSKATAAASRVLQMGFVLGLGLAVVVGVGLRF 433

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G G+F+KDVNV  +I +G+PFVAATQPINSLAFVFDGVNFGASDF YSAYSMVLVAI SI
Sbjct: 434 GLGVFTKDVNVQQIIFVGLPFVAATQPINSLAFVFDGVNFGASDFAYSAYSMVLVAIVSI 493

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGR-QR 231
           AS+F+LS+++GFVGIWVALTIYMGLRTFAGVWRM          W+F R QR
Sbjct: 494 ASLFLLSRSNGFVGIWVALTIYMGLRTFAGVWRM----GTGTGPWRFLRGQR 541

Source: Eucalyptus camaldulensis

Species: Eucalyptus camaldulensis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104069|ref|XP_002313305.1| predicted protein [Populus trichocarpa] gi|222849713|gb|EEE87260.1| predicted protein [Populus trichocarpa]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 183/232 (78%), Positives = 201/232 (86%), Gaps = 4/232 (1%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           M++V+LLPPS+KDLQFSRFLKNGF LL RV+A TICVTLAASRA  LGS  MAAFQICLQ
Sbjct: 296 MRKVNLLPPSVKDLQFSRFLKNGFLLLARVVAATICVTLAASRATRLGSTTMAAFQICLQ 355

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VWLTSSLLADGLAVAGQAI+A AFAEK+Y+KAT AATRVLQM FILGLGLA+ VGLGL+F
Sbjct: 356 VWLTSSLLADGLAVAGQAIIACAFAEKNYQKATTAATRVLQMSFILGLGLAVFVGLGLHF 415

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G  IFSKD +V+H+I IGIPFVAATQPINS+AFVFDGVNFGASDF YS+YSMVLVAIASI
Sbjct: 416 GGVIFSKDPDVLHIIAIGIPFVAATQPINSIAFVFDGVNFGASDFAYSSYSMVLVAIASI 475

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRL 232
            +IFVLSK  GFVGIWVALTI+MGLRTFAGVWRM          W+F R RL
Sbjct: 476 PAIFVLSKTGGFVGIWVALTIFMGLRTFAGVWRM----GTGTGPWRFLRGRL 523

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059630|ref|XP_002299942.1| predicted protein [Populus trichocarpa] gi|222847200|gb|EEE84747.1| predicted protein [Populus trichocarpa]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 183/232 (78%), Positives = 197/232 (84%), Gaps = 4/232 (1%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           MK++ LLPP +KDLQFSRFLKNGF LL RVIA TICVTLAASRAA LGS  MAAFQICLQ
Sbjct: 280 MKKIDLLPPRVKDLQFSRFLKNGFLLLARVIAATICVTLAASRAARLGSTTMAAFQICLQ 339

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VWLTSSLLADG AVAGQAI+A AFAEKDY+KAT AATRVLQM FILG+GLA+VVGL L+F
Sbjct: 340 VWLTSSLLADGFAVAGQAIIACAFAEKDYQKATTAATRVLQMSFILGIGLAVVVGLALHF 399

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G  IFSKD NV+ +I IGIPFVA TQPIN+LAFVFDGVNFGASDF YS+YSMVLVA ASI
Sbjct: 400 GDIIFSKDPNVLRIIAIGIPFVAGTQPINALAFVFDGVNFGASDFAYSSYSMVLVATASI 459

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRL 232
           A+IFVLSK SGFVGIWVALTI+MGLRTFAGVWRM          W F R RL
Sbjct: 460 AAIFVLSKTSGFVGIWVALTIFMGLRTFAGVWRM----GTGTGPWHFLRGRL 507

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532501|ref|XP_004173219.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein FRD3-like, partial [Cucumis sativus]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 169/233 (72%), Positives = 199/233 (85%), Gaps = 5/233 (2%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           +++V+L+PPSLKDLQF RFLKNG  LL RV+AVT CVTLAAS AA LG  PMAAFQ CLQ
Sbjct: 240 VQKVNLMPPSLKDLQFGRFLKNGGLLLARVVAVTFCVTLAASLAARLGPTPMAAFQTCLQ 299

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VW+TSSLL+DGLAVAGQAILA AFAEKDY+K T  ATRVLQM FILG+GLA++VG+G++F
Sbjct: 300 VWMTSSLLSDGLAVAGQAILASAFAEKDYEKTTATATRVLQMSFILGVGLAIIVGIGMFF 359

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G+GIFS+D++V HLIH+ IPFVAATQPINSLAFVFDGVNFGASDF YSAYS+VLVAIAS+
Sbjct: 360 GAGIFSRDIHVQHLIHLAIPFVAATQPINSLAFVFDGVNFGASDFAYSAYSLVLVAIASV 419

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGR-QRL 232
            S+F+LSK++GF+GIW+ALTIYM LR F GVWRM          W++ R QRL
Sbjct: 420 VSLFLLSKSNGFIGIWIALTIYMLLRAFVGVWRM----STGTGPWRYLRTQRL 468

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436675|ref|XP_004136118.1| PREDICTED: MATE efflux family protein FRD3-like [Cucumis sativus]

 Score =  342 bits (877), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 169/233 (72%), Positives = 199/233 (85%), Gaps = 5/233 (2%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           +++V+L+PPSLKDLQF RFLKNG  LL RV+AVT CVTLAAS AA LG  PMAAFQ CLQ
Sbjct: 303 VQKVNLMPPSLKDLQFGRFLKNGGLLLARVVAVTFCVTLAASLAARLGPTPMAAFQTCLQ 362

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VW+TSSLL+DGLAVAGQAILA AFAEKDY+K T  ATRVLQM FILG+GLA++VG+G++F
Sbjct: 363 VWMTSSLLSDGLAVAGQAILASAFAEKDYEKTTATATRVLQMSFILGVGLAIIVGIGMFF 422

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G+GIFS+D++V HLIH+ IPFVAATQPINSLAFVFDGVNFGASDF YSAYS+VLVAIAS+
Sbjct: 423 GAGIFSRDIHVQHLIHLAIPFVAATQPINSLAFVFDGVNFGASDFAYSAYSLVLVAIASV 482

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGR-QRL 232
            S+F+LSK++GF+GIW+ALTIYM LR F GVWRM          W++ R QRL
Sbjct: 483 VSLFLLSKSNGFIGIWIALTIYMLLRAFVGVWRM----STGTGPWRYLRTQRL 531

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|425875105|dbj|BAM68465.1| multi drugs and toxic compounds exclusion protein [Eucalyptus camaldulensis]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 169/232 (72%), Positives = 193/232 (83%), Gaps = 4/232 (1%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           MK+V+LLPPS KDLQF RFLKNG  LL RVIA TICVTLAAS AA LGSIPMAAFQ+CLQ
Sbjct: 350 MKQVNLLPPSCKDLQFRRFLKNGILLLARVIAATICVTLAASTAARLGSIPMAAFQVCLQ 409

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VW+TSSLLADGLAVAGQAILA AFAEKDY +A  A  RVLQMGF+LG+GLA++VG+GL F
Sbjct: 410 VWMTSSLLADGLAVAGQAILASAFAEKDYDRAIAAGVRVLQMGFVLGMGLAVLVGVGLRF 469

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           GSG+FSKD+NV HLI +GIPF+AATQPIN LAFV DGVNFGASDF YSAYSMV V++ SI
Sbjct: 470 GSGVFSKDINVQHLIFVGIPFIAATQPINCLAFVLDGVNFGASDFAYSAYSMVTVSLISI 529

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRL 232
           AS+F+LSK++G+VGIWVALTIYM LR   G+ RM          W+F R+ L
Sbjct: 530 ASLFLLSKSTGYVGIWVALTIYMVLRALVGLGRM----GTGSGPWRFIREGL 577

Source: Eucalyptus camaldulensis

Species: Eucalyptus camaldulensis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582777|ref|XP_002532164.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223528151|gb|EEF30217.1| DNA-damage-inducible protein f, putative [Ricinus communis]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/232 (74%), Positives = 190/232 (81%), Gaps = 4/232 (1%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           MK V  LPPS KDLQF +FLKNGF LL R+IA TI   LAASR A LGS PMAAFQICLQ
Sbjct: 289 MKSVDFLPPSPKDLQFGKFLKNGFLLLARIIAATIFKVLAASRGARLGSTPMAAFQICLQ 348

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VWLTSSLLADGL VAGQAI+A AFAEKDY+KAT AATR+LQM F+LGLGLA VVG+GL+F
Sbjct: 349 VWLTSSLLADGLTVAGQAIIACAFAEKDYQKATAAATRILQMSFVLGLGLAAVVGVGLHF 408

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G GIFSKD NV+ +I IGIPFVAATQ INS+A VFDGVNFGASDF YSAYSMVLVAIASI
Sbjct: 409 GDGIFSKDPNVLDIISIGIPFVAATQHINSIALVFDGVNFGASDFAYSAYSMVLVAIASI 468

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQRL 232
            +IFVLSK +GFVGIW+A+TI+MGLRT AGVWRM          W F R +L
Sbjct: 469 VAIFVLSKTAGFVGIWIAITIFMGLRTLAGVWRM----GTGTGPWNFLRGKL 516

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487370|ref|XP_002275374.2| PREDICTED: MATE efflux family protein FRD3-like [Vitis vinifera]

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 186/231 (80%), Positives = 196/231 (84%), Gaps = 4/231 (1%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           MKEV LLPPSLKDLQF RFLKNG  LL RVIA T CVTLAAS AA LGS PMAAFQICLQ
Sbjct: 318 MKEVDLLPPSLKDLQFRRFLKNGVLLLGRVIAATFCVTLAASLAARLGSTPMAAFQICLQ 377

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VW+TSSLLADGLAVAGQAILA AFAE DY KAT AATRVLQMGFILGLGLAL+VGLGL F
Sbjct: 378 VWMTSSLLADGLAVAGQAILACAFAENDYAKATNAATRVLQMGFILGLGLALLVGLGLQF 437

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G+ +FSKDVNV+HLI IG+PFVAATQPINSLAFVFDGVNFGASDF YSAYSM+LVAI SI
Sbjct: 438 GAKVFSKDVNVLHLISIGVPFVAATQPINSLAFVFDGVNFGASDFAYSAYSMILVAIVSI 497

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQR 231
           AS+F LSK+ G+VGIWVALTIYMGLRTFAG WRM          W F R R
Sbjct: 498 ASLFCLSKSYGYVGIWVALTIYMGLRTFAGFWRM----GTGTGPWHFLRNR 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357457739|ref|XP_003599150.1| Ferric reductase defective 3b [Medicago truncatula] gi|355488198|gb|AES69401.1| Ferric reductase defective 3b [Medicago truncatula]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 167/229 (72%), Positives = 190/229 (82%), Gaps = 4/229 (1%)

Query: 1   MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
           MK+V LLPPS+KDLQ  RFLKNG  LL RVIAVT CVTL+AS AA LG IPMAAFQ CLQ
Sbjct: 311 MKKVDLLPPSMKDLQIFRFLKNGGLLLARVIAVTFCVTLSASLAARLGPIPMAAFQTCLQ 370

Query: 61  VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
           VW+TSSLLADGLAVA QAILA +FAEKDY K T AATR LQM F+LG+GL+LVVG GLYF
Sbjct: 371 VWMTSSLLADGLAVAIQAILACSFAEKDYNKVTTAATRTLQMSFVLGVGLSLVVGGGLYF 430

Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
           G+G+FSK+V VIHLI +G+PFVAATQPINSLAFVFDGVN+GASDF YSAYS+V+V+IAS+
Sbjct: 431 GAGVFSKNVAVIHLIRLGLPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLVMVSIASV 490

Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGR 229
            S+F L K+ GF+GIW+ALTIYM LR FAGVWRM          W+F R
Sbjct: 491 TSLFFLYKSKGFIGIWIALTIYMSLRMFAGVWRM----GTGTGPWRFLR 535

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2077477	526	FRD3 "FERRIC REDUCTASE DEFECTI	0.969	0.429	0.621	9.2e-68
TAIR|locus:2008236	515	AT1G51340 [Arabidopsis thalian	0.918	0.415	0.598	3.4e-61
TAIR|locus:2121783	560	AT4G38380 [Arabidopsis thalian	0.914	0.380	0.413	3.3e-40
TAIR|locus:2057135	521	AT2G38330 "AT2G38330" [Arabido	0.914	0.408	0.384	2.4e-35

TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 143/230 (62%), Positives = 165/230 (71%)

Query:     2 KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQV 61
             K+V+L+PP+  DLQF RFLKNG  LL R IAVT C TLAA+ AA LG+ PMAAFQICLQV
Sbjct:   295 KKVNLIPPNFGDLQFGRFLKNGLLLLARTIAVTFCQTLAAAMAARLGTTPMAAFQICLQV 354

Query:    62 WLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMXXXXXXXXXXXXXXXXXXX 121
             WLTSSLL DGLAVAGQAILA +FAEKDY K T  A+RVLQM                   
Sbjct:   355 WLTSSLLNDGLAVAGQAILACSFAEKDYNKVTAVASRVLQMGFVLGLGLSVFVGLGLYFG 414

Query:   122 SGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIA 181
             +G+FSKD  VIHL+ IGIPF+AATQPINSLAFV DGVNFGASDF Y+AYSMV VA  SIA
Sbjct:   415 AGVFSKDPAVIHLMAIGIPFIAATQPINSLAFVLDGVNFGASDFAYTAYSMVGVAAISIA 474

Query:   182 SIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQR 231
             ++  ++K +GF+GIW+ALTIYM LR   G+ RM          W+F R R
Sbjct:   475 AVIYMAKTNGFIGIWIALTIYMALRAITGIARMAT----GTGPWRFLRGR 520

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0015137 "citrate transmembrane transporter activity" evidence=IDA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 128/214 (59%), Positives = 151/214 (70%)

Query:     1 MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
             M +V +   S K LQF RF+KNGF LL RVIAVT CVTL+AS AA  GS  MAAFQ+CLQ
Sbjct:   290 MGQVDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQ 349

Query:    61 VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMXXXXXXXXXXXXXXXXXX 120
             VWL +SLLADG AVAGQAILA AFA+KDYK+A   A+RVLQ+                  
Sbjct:   350 VWLATSLLADGYAVAGQAILASAFAKKDYKRAAATASRVLQLGLVLGFVLAVILGAGLHF 409

Query:   121 XSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
              + +F+KD  V+HLI IG+PFVA TQPIN+LAFVFDGVNFGASDF Y+A S+V+VAI SI
Sbjct:   410 GARVFTKDDKVLHLISIGLPFVAGTQPINALAFVFDGVNFGASDFGYAAASLVMVAIVSI 469

Query:   181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRM 214
               +  LS   GF+G+W  LTIYM LR   G WR+
Sbjct:   470 LCLLFLSSTHGFIGLWFGLTIYMSLRAAVGFWRI 503

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 88/213 (41%), Positives = 131/213 (61%)

Query:     2 KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQV 61
             K V LLPP +  L+F  +LK+G ++L R ++V + +T+A S AA  G   MAA QIC+QV
Sbjct:   330 KRVILLPPKIGSLKFGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQV 389

Query:    62 WLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMXXXXXXXXXXXXXXXXXXX 121
             WL  SLL D LA +GQA++A + +++D++      T VL++                   
Sbjct:   390 WLAVSLLTDALASSGQALIASSASKRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSI 449

Query:   122 SGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIA 181
             +G+FSKD  V+ ++  G+ FVAATQPI +LAF+FDG+++G SDF Y+A SM++V   S A
Sbjct:   450 AGLFSKDPEVLRIVRKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACSMMVVGGISSA 509

Query:   182 SIFVLSKASGFVGIWVALTIYMGLRTFAGVWRM 214
              +       G  G+WV L+++MGLR  AG  R+
Sbjct:   510 FMLYAPAGLGLSGVWVGLSMFMGLRMVAGFSRL 542

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 82/213 (38%), Positives = 121/213 (56%)

Query:     2 KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQV 61
             + V LL P +K  + +++LK+G  L+ R +A+ +  TLA S AA  G   MA  QI L++
Sbjct:   291 ENVVLLSPQIKVGRANQYLKSGGLLIGRTVALLVPFTLATSLAAQNGPTQMAGHQIVLEI 350

Query:    62 WLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMXXXXXXXXXXXXXXXXXXX 121
             WL  SLL D LA+A Q++LA  +++ +YK+A      VLQ+                   
Sbjct:   351 WLAVSLLTDALAIAAQSLLATTYSQGEYKQAREVLFGVLQVGLATGTGLAAVLFITFEPF 410

Query:   122 SGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIA 181
             S +F+ D  V+ +   G  FVA +QP+N+LAFV DG+ +G SDF ++AYSMV+V   S  
Sbjct:   411 SSLFTTDSEVLKIALSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIVGFISSL 470

Query:   182 SIFVLSKASGFVGIWVALTIYMGLRTFAGVWRM 214
              + V +   G  GIW  L ++M LR  AG WR+
Sbjct:   471 FMLVAAPTFGLAGIWTGLFLFMALRLVAGAWRL 503


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.138   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       214   0.00085  112 3  11 22  0.39    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  157 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.68u 0.12s 14.80t   Elapsed:  00:00:00
  Total cpu time:  14.68u 0.12s 14.80t   Elapsed:  00:00:00
  Start:  Sat May 11 06:22:50 2013   End:  Sat May 11 06:22:50 2013

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	2e-52
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	4e-21
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	3e-16
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	1e-11
pfam01554	161	pfam01554, MatE, MatE	4e-09
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	4e-07
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	2e-06
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	4e-06
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	5e-05
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	1e-04
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	0.001
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	0.002

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score =  174 bits (443), Expect = 2e-52
 Identities = 71/211 (33%), Positives = 102/211 (48%)

Query: 5   HLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLT 64
            L           R  K    +  R +A+        + AA LG + +AA QI LQ WL 
Sbjct: 213 SLSRRLPSKAALKRLFKLNRDIFIRTLALLAAFLFFTALAARLGDVILAANQILLQFWLL 272

Query: 65  SSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGI 124
           SS   DG A A +A++  A    D K A   A R+LQ G  LG+ LAL+  LG      +
Sbjct: 273 SSYFLDGFAYAAEALVGRALGAGDRKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRL 332

Query: 125 FSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIF 184
           F+ D  V+ L    +P++A   PI +LAFV DG+  GA+D  Y   SM++     +  +F
Sbjct: 333 FTDDPAVLALAATYLPWLALLPPIGALAFVLDGIFIGATDTRYLRNSMLVSLAVFLPLLF 392

Query: 185 VLSKASGFVGIWVALTIYMGLRTFAGVWRMR 215
           +L    G  G+W+AL ++M LR      R+ 
Sbjct: 393 LLVPLWGNHGLWLALILFMLLRGLTLALRLP 423

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 89.6 bits (223), Expect = 4e-21
 Identities = 44/129 (34%), Positives = 64/129 (49%)

Query: 15  QFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAV 74
              R LK G  +  RVI  ++   L A   A LGSI +AA QI L V     + A G  +
Sbjct: 214 VLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGI 273

Query: 75  AGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHL 134
           A   ++  A    D K+A   A   L++  +LGL LA+++ L   F + +F+ D  V+ L
Sbjct: 274 AVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLEL 333

Query: 135 IHIGIPFVA 143
             I + FVA
Sbjct: 334 AAIYLIFVA 342

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 2/202 (0%)

Query: 16  FSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVA 75
               L+ G  +    ++ ++   L     A LG++ +AA+ I L++     +   G+A A
Sbjct: 240 LKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQA 299

Query: 76  GQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLI 135
              ++       +YK+A  AA   L++  ++ L +AL++ L       +F+ D  VI L 
Sbjct: 300 VTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALA 359

Query: 136 HIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVL--VAIASIASIFVLSKASGFV 193
            I +   A  QP + + FV  GV  GA D        +L         +  +     G  
Sbjct: 360 VILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLA 419

Query: 194 GIWVALTIYMGLRTFAGVWRMR 215
           G+W+   + + LR    + R+R
Sbjct: 420 GVWIGFPLSLILRAILLLLRLR 441

Length = 455

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 5/175 (2%)

Query: 45  ATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGF 104
           A+ G+  +AA+QI L++   + +   G ++A   ++       D  +A     R L++G 
Sbjct: 254 ASYGTAALAAYQIGLRIESLAFMPGFGFSMAASTLVGQNLGAGDPDEARRYGKRALRLGV 313

Query: 105 ILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASD 164
           +    L L++ +     + +F+ D  VI L  + +  VA +QP  +++FV  G   GA D
Sbjct: 314 LFMGLLGLLLFIFAPPLASLFTPDPEVIELGVLYLRIVALSQPFLAISFVLSGALRGAGD 373

Query: 165 ----FVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMR 215
                + +  SM LV +  +A +       G  GIW+A+ +   +R    ++R R
Sbjct: 374 TRPPLIINLISMWLVRLP-LAYLLGFVLGLGLTGIWLAMFVDTIVRAILLLYRFR 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 33/137 (24%), Positives = 62/137 (45%)

Query: 44  AATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMG 103
              LG++ +AA  I   +     +   GL+ A   ++  A    ++K+A +A  + L + 
Sbjct: 20  VGHLGAVALAAVSIANSIASLIFMFLLGLSTALTTLVGQALGAGNFKRAGVALRQGLILS 79

Query: 104 FILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGAS 163
            ++ L +AL++ L       +F++D  V+ L    +  +A   P  SL FV  G   GA 
Sbjct: 80  LLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILALGIPFLSLQFVLSGFLRGAG 139

Query: 164 DFVYSAYSMVLVAIASI 180
           D     Y  ++  + +I
Sbjct: 140 DTKPPLYINLISLLLNI 156

The MatE domain. Length = 161

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 5/175 (2%)

Query: 45  ATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGF 104
           A LG+  +AA      + +   L +  +  A Q I+       D+ +A     + L++G 
Sbjct: 256 ARLGTAALAARTYASNISMFVFLFSLAIGQATQIIVGHLVGAGDFDEAYKRVLKSLKIGL 315

Query: 105 ILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASD 164
           ++ L +AL++ L      G+F+ D  +I L    +      +P  +   V  G    A D
Sbjct: 316 LVSLAVALLLALFREPILGLFTDDPEIIALGKTLLLISILLEPGRAFNIVLIGSLRAAGD 375

Query: 165 ----FVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMR 215
                +    SM  +++  +A +  +    G +G+W+A      +R    +WR R
Sbjct: 376 ARFPVLIGIISMWGISVP-LAYLLGIVLGLGLLGVWIAFAADEWVRGIIMLWRWR 429

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 3/198 (1%)

Query: 16  FSRFLKNGFWLLTRVIAVTIC-VTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAV 74
             R L+ G     +   +++  + + A  AA  G+  +AA+ +  ++   + + A GLA 
Sbjct: 218 LRRLLRIGLPSAIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRIASLAFMPALGLAQ 277

Query: 75  AGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHL 134
           A   ++       ++ +A       L +G ++G  L L++ L       +F+ D   + L
Sbjct: 278 AALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSLFTNDPEFLEL 337

Query: 135 IHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGF-- 192
               +  +A       + +V       A   + S    +L        +  +    G   
Sbjct: 338 AVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPLAYVLAYLGLGL 397

Query: 193 VGIWVALTIYMGLRTFAG 210
            GIW+AL I + L     
Sbjct: 398 YGIWLALVISLILAALVL 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 13/209 (6%)

Query: 16  FSRFLKNGFWL----LTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADG 71
             R L+ G          V A T+   L       LG+  +AA  I   +   + L   G
Sbjct: 230 LRRILRLGLPSGLQFFLDVGAFTVFFLLIGR----LGTTELAATNIVFSINSLAFLPMIG 285

Query: 72  LAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNV 131
           L +A  +++  A        A     R L++     L L ++  L       IF+   + 
Sbjct: 286 LGIAVSSLVGQALGAGRPDLAMRVTRRGLKLALAYMLLLGILFLLFPELLLSIFTPGADF 345

Query: 132 IHLIHIGIP---FVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSK 188
             +  + +P   FVAA    ++LA VF G   GA D  +   + ++VA   +     L  
Sbjct: 346 ALIAELAVPLLRFVAAYILFDALALVFAGALRGAGDTRFVMLAELIVAWLYLLPPAYLLV 405

Query: 189 ASGF--VGIWVALTIYMGLRTFAGVWRMR 215
             G    G W   T+Y+ +     + R R
Sbjct: 406 VLGAGLAGAWTVETVYVIVLALIFLLRFR 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 28/111 (25%), Positives = 55/111 (49%)

Query: 48  GSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILG 107
           G++ +AA  ICL       ++  G+++A    +       + K+A LAA   L +  ++G
Sbjct: 256 GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKRAKLAAIVALILSLVIG 315

Query: 108 LGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGV 158
           + +A+++ +     + +F+ D  VI L+   +P +A  Q  + L  V  GV
Sbjct: 316 VVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGLQAVLSGV 366

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 3/156 (1%)

Query: 46  TLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFI 105
           + G +  AA+ I  ++   + L    +  A    +A        ++A       + +  I
Sbjct: 254 SYGVVASAAYGIANKINSFAFLPPSAIGQAVSTFVAQNIGAGKIERAKKGLRTGIIISLI 313

Query: 106 LGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF 165
           +GL + L+V        G+F+ D  VI +    +   +    +  + FVF+G+  G    
Sbjct: 314 IGLIIILLVFFFAPQLLGLFTSDPEVIEIGAEYLRIYSIDYILFGILFVFNGLFRGLGKT 373

Query: 166 VYSAYSMVLVAIAS-IASIFVLSKAS--GFVGIWVA 198
            +     +L      I   ++LS+ +  G  GIW+A
Sbjct: 374 KFPMIISILRLWLVRIPLAYLLSRLTGLGLFGIWLA 409

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 21/211 (9%)

Query: 5   HLLPPSLKDLQFSR-----FLKNGFWLLTRVIAVTICVTL-AASRAATLGSIPMAAFQIC 58
            LL  SL   + S       L  GF      ++ ++   +   +     G I +AAF I 
Sbjct: 209 SLLKLSLLRFKLSLKIIKEILALGFPSFLMQLSSSVVTIVLNLTLLGYGGDIGVAAFGIV 268

Query: 59  LQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGL 118
            ++     L   GL+   Q I+   +   +Y +   A    L +  I GL L L++ L  
Sbjct: 269 TRILTFLFLPLIGLSQGLQPIIGYNYGAGNYDRVKQALKLALIVALIYGLVLFLILLLFP 328

Query: 119 YFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYS----AYSMVL 174
                +F+ D  +I    +    +     I  LAF   G+N   S +  +      + +L
Sbjct: 329 EQIVSLFTDDPELIA---LAARIL----RIFLLAFPLAGINIVLSGYFQAIGKAKRAALL 381

Query: 175 VA----IASIASIFVLSKASGFVGIWVALTI 201
                 +  I  + +L +  G  GIW+A  +
Sbjct: 382 SLLRQGLFLIPLLLILPRLFGLDGIWLAFPL 412

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 4/173 (2%)

Query: 47  LGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFIL 106
           LG+  +AA  +   ++     +  GL      ++A A    D KKA     + L +  +L
Sbjct: 47  LGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLL 106

Query: 107 GLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFV 166
           GL LA+++         +      V+ L    +  +    P   L+FV  G+  G  D  
Sbjct: 107 GLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTK 166

Query: 167 YSAYSMVLVAIASIA----SIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMR 215
              Y ++L  + +I      IF L    G  G  +A  I   +     +  + 
Sbjct: 167 TPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLL 219

Length = 455

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	100.0
PRK01766	456	multidrug efflux protein; Reviewed	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.97
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.97
PRK01766	456	multidrug efflux protein; Reviewed	99.96
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.92
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.91
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.91
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.86
PRK15099	416	O-antigen translocase; Provisional	99.82
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.78
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.75
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.73
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.73
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.71
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.69
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.63
PRK15099	416	O-antigen translocase; Provisional	99.63
PRK10459	492	colanic acid exporter; Provisional	99.61
COG2244	480	RfbX Membrane protein involved in the export of O-	99.57
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.29
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	98.73
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.69
PRK10459	492	colanic acid exporter; Provisional	98.65
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.56
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	98.5
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.18
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.14
COG2244	480	RfbX Membrane protein involved in the export of O-	98.1
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	97.47
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.35
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	95.97

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=1.2e-34  Score=257.01  Aligned_cols=216  Identities=22%  Similarity=0.298  Sum_probs=208.1

Q ss_pred             CCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCC
Q 026802            9 PSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKD   88 (233)
Q Consensus         9 ~~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~   88 (233)
                      +++|++.+|+++++|.|.+++++++..++.+.+.+++++|++++|||+++.++.++.+++..|+++|+++++||++||||
T Consensus       233 ~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~  312 (455)
T COG0534         233 LKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGN  312 (455)
T ss_pred             cCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHH
Q 026802           89 YKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYS  168 (233)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~  168 (233)
                      +|++|++.+.+..++..++++.+.+.+++++++.++|++|||+.+.+.+++++.+..+++++.+.+..|++||.||++.+
T Consensus       313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~  392 (455)
T COG0534         313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP  392 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhh
Q 026802          169 AYSM-VLVAIASIASIFVLSKA-SGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQ  230 (233)
Q Consensus       169 ~~~~-~~~~~~~i~l~~~~~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  230 (233)
                      +++. +..|.+++|+.+++... +|..|+|+++..++.++.+...+++++      .+|++.+.
T Consensus       393 ~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  450 (455)
T COG0534         393 FIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRR------GRWRRKAV  450 (455)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhhh
Confidence            9995 56889999999999776 999999999999999999999999999      88877644

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=8.9e-34  Score=253.09  Aligned_cols=212  Identities=17%  Similarity=0.192  Sum_probs=203.1

Q ss_pred             CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802           11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK   90 (233)
Q Consensus        11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~   90 (233)
                      .|++.+|+++++|+|.+++++....+..+.+.+++++|++++|||+++.+++++.+++..|+++|+++++||++|+||+|
T Consensus       253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~  332 (478)
T PRK10189        253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIA  332 (478)
T ss_pred             CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802           91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY  170 (233)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  170 (233)
                      ++|+..+.+..+++.++++++++.+++++++.++|++|+|+.+.+..++++.++.+++++.+++..+.+||.||++.+++
T Consensus       333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~  412 (478)
T PRK10189        333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW  412 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhh
Q 026802          171 SM-VLVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFG  228 (233)
Q Consensus       171 ~~-~~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  228 (233)
                      +. ...|++.+|+.|++.  .++|+.|+|++..+++.++.+..++|+++      ++|++.
T Consensus       413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~------~~W~~~  467 (478)
T PRK10189        413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVS------GRWLWK  467 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHc------CccccC
Confidence            94 678899999998873  57999999999999999999999999999      888773

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=3e-32  Score=242.62  Aligned_cols=207  Identities=18%  Similarity=0.121  Sum_probs=195.1

Q ss_pred             CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCH
Q 026802           10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDY   89 (233)
Q Consensus        10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~   89 (233)
                      +.+++.+|+++++|+|.+++++.+...+.+++.+++++|++++||++++.++..+.+.+..|+++|+++++||++|+||+
T Consensus       229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~  308 (464)
T PRK00187        229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRL  308 (464)
T ss_pred             CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC--CH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCc
Q 026802           90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSK--DV---NVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASD  164 (233)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~  164 (233)
                      |+++++.+.++.+++.++++++++.+++++++.++|++  ||   |+.+.+..|+++.+++.++.+++.+..+++||.||
T Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~  388 (464)
T PRK00187        309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD  388 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence            99999999999999999999999999999999999974  44   78999999999999999999999999999999999


Q ss_pred             hHHHHHHHH-HHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          165 FVYSAYSMV-LVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       165 ~~~~~~~~~-~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      ++.++++.+ ..|++++|+.|++.  +++|+.|+|+++.+++++..+..+.++++
T Consensus       389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~  443 (464)
T PRK00187        389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW  443 (464)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence            999999965 56799999999884  57999999999999999999888888766

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=5e-32  Score=240.24  Aligned_cols=212  Identities=19%  Similarity=0.179  Sum_probs=201.3

Q ss_pred             cCCCCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhh
Q 026802            6 LLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFA   85 (233)
Q Consensus         6 ~~~~~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~G   85 (233)
                      ..+.+ +++..|+++++++|++++++.+.+.+.+|+.++||+|++++||.+++.++..+.+.+..|++.|++++++|++|
T Consensus         7 ~~~~~-~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~G   85 (455)
T COG0534           7 LLEGP-FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIG   85 (455)
T ss_pred             hhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence            33344 56689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802           86 EKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF  165 (233)
Q Consensus        86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~  165 (233)
                      +||++++|+..++++.++..++++.+++.+.++++++.+++.++|+.+.+.+|+++..++.|+..+.++.++++|+.||+
T Consensus        86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~  165 (455)
T COG0534          86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDT  165 (455)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---c-CChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026802          166 VYSAYSMVLVAIASIASIFVLSK---A-SGFVGIWVALTIYMGLRTFAGVWRMRDVY  218 (233)
Q Consensus       166 ~~~~~~~~~~~~~~i~l~~~~~~---~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~  218 (233)
                      +.++++++.+.++|+.+++++.+   + +|+.|+++|+.+++.+..+....++++++
T Consensus       166 ~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~  222 (455)
T COG0534         166 KTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK  222 (455)
T ss_pred             chhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999998843   4 99999999999999999998888887744

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=100.00  E-value=6e-31  Score=233.70  Aligned_cols=207  Identities=14%  Similarity=0.155  Sum_probs=195.8

Q ss_pred             CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCC
Q 026802           10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGS-IPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKD   88 (233)
Q Consensus        10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~-~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~   88 (233)
                      ++|++.+|+++++|.|..+++..+.....+.+.+++++|+ +++|+++++.++.++++.+..|+++|+++++||++|+||
T Consensus       227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~  306 (453)
T PRK09575        227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQ  306 (453)
T ss_pred             CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCC
Confidence            4678889999999999999999999999999999999996 689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHH
Q 026802           89 YKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSK-DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVY  167 (233)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~  167 (233)
                      +||+|+..+.++.+++..+++.+++++.+++++..+|++ |||+.+.+.+|+++.++++++++++.+..+++||.||++.
T Consensus       307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~  386 (453)
T PRK09575        307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGK  386 (453)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence            999999999999999999999999999999999999995 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          168 SAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       168 ~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      ++..++..+++++|+.+++...+|+.|+|+++.+++.+..+...+++++
T Consensus       387 ~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~  435 (453)
T PRK09575        387 ALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWR  435 (453)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999878888899999988766899999999999999998877776665

>PRK01766 multidrug efflux protein; Reviewed

Probab=100.00  E-value=7e-31  Score=233.36  Aligned_cols=207  Identities=19%  Similarity=0.151  Sum_probs=197.7

Q ss_pred             CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCH
Q 026802           10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDY   89 (233)
Q Consensus        10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~   89 (233)
                      +.+++.+|+++++++|.+++++.+...+.+++.+++++|++++||++++.++.++.+.+..|++.|.++++||++|+||+
T Consensus       232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~  311 (456)
T PRK01766        232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRT  311 (456)
T ss_pred             CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHH
Q 026802           90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSA  169 (233)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  169 (233)
                      +++|+..+.++.+++.++++++.+.+.+++++.++|++|||+.+.+..|+++.+++.++.+++.+..+++||.||++.++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  391 (456)
T PRK01766        312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF  391 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHH--hccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          170 YSMVL-VAIASIASIFVL--SKASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       170 ~~~~~-~~~~~i~l~~~~--~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      .+.+. .|++++|+.+++  .+++|+.|+|+++.+++.++.+..++++++
T Consensus       392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~  441 (456)
T PRK01766        392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK  441 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            99654 668999998887  357999999999999999999999999888

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=1.9e-30  Score=229.67  Aligned_cols=205  Identities=14%  Similarity=0.050  Sum_probs=193.0

Q ss_pred             CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802           12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK   90 (233)
Q Consensus        12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~   90 (233)
                      -.++.|++++++.|.+++++.+.....+|+.+++++ |++++||++++.++.++.+.+..|++.++++++||++|+||+|
T Consensus         4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            356799999999999999999999999999999999 6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802           91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY  170 (233)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  170 (233)
                      +++++.++++.++..+++++..+...+.+++..+++.|||+.+.+.+|+++.+++.|+..+..+.++++||.||++.+++
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            99999999999999999998888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          171 SMVLVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       171 ~~~~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      ..+.+.++|+++++++.  +++|+.|+|+++.+++.+..+...+++++
T Consensus       164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~  211 (441)
T PRK10367        164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK  211 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988999999999874  47999999999999999998877666654

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=1.6e-30  Score=231.55  Aligned_cols=205  Identities=16%  Similarity=0.081  Sum_probs=191.1

Q ss_pred             CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802           11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK   90 (233)
Q Consensus        11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~   90 (233)
                      +|++++|+++++++|.+++++++.+...+|+.+++++|++++||++++.++.+++..+..|++.|+++++||++|+||+|
T Consensus         4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~   83 (464)
T PRK00187          4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE   83 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802           91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY  170 (233)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  170 (233)
                      +++++.+.++.++.+++++..++.+ +.++++.+|+.|||+.+.+.+|+++.+++.|+..+.+..++++||.||++.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  162 (464)
T PRK00187         84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV  162 (464)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            9999999999999999998777766 678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc------cCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          171 SMVLVAIASIASIFVLSK------ASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       171 ~~~~~~~~~i~l~~~~~~------~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      .++...++|++++|++.+      ++|+.|+|+++.+++....+...+++++
T Consensus       163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~  214 (464)
T PRK00187        163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR  214 (464)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988743      4899999999999888777666555543

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=2e-30  Score=231.61  Aligned_cols=202  Identities=16%  Similarity=0.147  Sum_probs=190.8

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHH
Q 026802           14 LQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKAT   93 (233)
Q Consensus        14 ~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~   93 (233)
                      +.+|+++++++|.+++++++.....+|+.+++++|++++||++++.++.++.+.+..|+++|+++++||++|+||+|+++
T Consensus        26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~  105 (478)
T PRK10189         26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRAR  105 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--CCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802           94 LAATRVLQMGFILGLGLALVVGLGLYFGSGIFS--KDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS  171 (233)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~  171 (233)
                      ++.+.++.+++.++++.+++.+++++++..+|+  .|||+.+.+.+|+++..++.|+..+..+.++++||.||++.++.+
T Consensus       106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i  185 (478)
T PRK10189        106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI  185 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence            999999999999999999999999999999995  799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh------ccCChHHHHHHHHHHHHHHHHHHHHHHh
Q 026802          172 MVLVAIASIASIFVLS------KASGFVGIWVALTIYMGLRTFAGVWRMR  215 (233)
Q Consensus       172 ~~~~~~~~i~l~~~~~------~~~g~~G~~~a~~~~~~~~~~~~~~~~~  215 (233)
                      .+..+.+|+++++.+.      +++|+.|+|+++.+++.+..+...+++.
T Consensus       186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~  235 (478)
T PRK10189        186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM  235 (478)
T ss_pred             HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999988773      3789999999999999999877665554

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.97  E-value=8.1e-29  Score=219.23  Aligned_cols=197  Identities=19%  Similarity=0.197  Sum_probs=175.1

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHH
Q 026802           14 LQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKAT   93 (233)
Q Consensus        14 ~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~   93 (233)
                      +.+|+++++|.|.++++..+..++.+.+.+++++|++++|||+++.+++++.+++..|+++|+++++||++|+||+|++|
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~  308 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLL  308 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHhhcCchHHHH
Q 026802           94 LAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAF----VFDGVNFGASDFVYSA  169 (233)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~----~~~~~l~g~g~~~~~~  169 (233)
                      +..+.+..++.+++.+++++++.+++++.++|++|||+.+.+.+++++.+...+......    +..|.+||. ||+.++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~~  387 (441)
T PRK10367        309 DVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNSM  387 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHHH
Confidence            999999999999999999999999999999999999999999999999987644332333    455666665 799999


Q ss_pred             HHHHH-HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          170 YSMVL-VAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       170 ~~~~~-~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      .+... .|++.+     ..+.+|+.|+|++..+++.++.+...+++++
T Consensus       388 ~~~~~~~~~~~~-----~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~  430 (441)
T PRK10367        388 AVAAAGFALTLL-----TLPWLGNHGLWLALTVFLALRGLSLAAIWRR  430 (441)
T ss_pred             HHHHHHHHHHHH-----HHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98654 443222     2346799999999999999999999999888

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.97  E-value=9.2e-29  Score=219.71  Aligned_cols=205  Identities=13%  Similarity=0.011  Sum_probs=194.4

Q ss_pred             CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802           12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK   90 (233)
Q Consensus        12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~   90 (233)
                      +++..|+++++++|.+++++.+.+...+|+.+++++ |++++||++++.++.++...+..+++.|+++++||++|+||+|
T Consensus         7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~   86 (453)
T PRK09575          7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE   86 (453)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence            456789999999999999999999999999999996 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802           91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY  170 (233)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  170 (233)
                      ++++..+.++.++..++++.+++.+.+++++..+|+.|+|+.+.+.+|+++..++.|+..+.+...+++|+.||++.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  166 (453)
T PRK09575         87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG  166 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          171 SMVLVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       171 ~~~~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      .++.+.++|+++++++.  +++|+.|+|+++.+++.+..+...+++++
T Consensus       167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~  214 (453)
T PRK09575        167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS  214 (453)
T ss_pred             HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            98888899999998884  47999999999999999998887776654

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.96  E-value=2.7e-27  Score=210.39  Aligned_cols=205  Identities=17%  Similarity=0.093  Sum_probs=193.8

Q ss_pred             CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHH
Q 026802           12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKK   91 (233)
Q Consensus        12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~   91 (233)
                      .++.+|++++++.|.++++++..+...+|+.+++++|++++||++++.++..+...+..|++.+.++++||++|+||+|+
T Consensus         7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~   86 (456)
T PRK01766          7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRER   86 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            46679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802           92 ATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS  171 (233)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~  171 (233)
                      +++..+.++.++..+++++.++.+.+++++..+|+.|||+.+.+.+|+++.+++.|+..+..+.++++||.||++.+++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  166 (456)
T PRK01766         87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI  166 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh------ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          172 MVLVAIASIASIFVLS------KASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       172 ~~~~~~~~i~l~~~~~------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      .+...++|+++++++.      +.+|+.|+|+++.+++.+..+...++.++
T Consensus       167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~  217 (456)
T PRK01766        167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR  217 (456)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888899999988874      46899999999999999998887777665

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.92  E-value=7.2e-26  Score=173.80  Aligned_cols=161  Identities=24%  Similarity=0.313  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHH
Q 026802           25 WLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGF  104 (233)
Q Consensus        25 P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~  104 (233)
                      |.+++++.+...+.+++.+++++|++++|+++++.++.++...+..|+++|.++++||++|+||+||++++.+.++.++.
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~   80 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL   80 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHH-HHHHHHHHH
Q 026802          105 ILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVL-VAIASIASI  183 (233)
Q Consensus       105 ~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~-~~~~~i~l~  183 (233)
                      .++++++++..++++++..+|++|+|+.+.+.+|+++..+..|+..+.+..++++||.||++.+++..+. .|++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~  160 (162)
T PF01554_consen   81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA  160 (162)
T ss_dssp             HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999665 559999998


Q ss_pred             HH
Q 026802          184 FV  185 (233)
Q Consensus       184 ~~  185 (233)
                      |+
T Consensus       161 yl  162 (162)
T PF01554_consen  161 YL  162 (162)
T ss_dssp             HH
T ss_pred             hC
Confidence            75

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.91  E-value=2.4e-22  Score=171.85  Aligned_cols=192  Identities=20%  Similarity=0.212  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHH
Q 026802           25 WLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGF  104 (233)
Q Consensus        25 P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~  104 (233)
                      |.++++.+..+...+++.+++++|++++++++++.++.++...+..|++++..+.++|++|++|+|++++..+.+..+..
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL   80 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH
Q 026802          105 ILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIF  184 (233)
Q Consensus       105 ~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~i~l~~  184 (233)
                      .++++.+++.+++++++..+|+.|+|..+.+.+++++.+++.++..++....+++|+.||++.++...+...+++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~  160 (342)
T TIGR00797        81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY  160 (342)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999998899999999999999999999999999999999999999999998888888888877


Q ss_pred             HHhc---c-CChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          185 VLSK---A-SGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       185 ~~~~---~-~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      .+..   + +|+.|+++++.+++.+..+...+++++
T Consensus       161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~  196 (342)
T TIGR00797       161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK  196 (342)
T ss_pred             HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6643   4 679999999999999998887777665

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.91  E-value=5.3e-22  Score=178.14  Aligned_cols=207  Identities=12%  Similarity=0.028  Sum_probs=192.7

Q ss_pred             CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHhhcCCH
Q 026802           11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSL-LADGLAVAGQAILAGAFAEKDY   89 (233)
Q Consensus        11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~-~~~g~~~a~~~~i~~~~Ga~~~   89 (233)
                      .+++..|++++.+.|..+++........+|+.+.+.+|++++++++.+.++.++... +..+++.+..|.++|++|+||+
T Consensus       217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~  296 (502)
T TIGR01695       217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW  296 (502)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            467889999999999999999999999999998888899999999999999988765 6789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC----CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802           90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSK----DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF  165 (233)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~  165 (233)
                      +++|+..+++......++++.+..+..+++++..+|..    |+|..+.+..++.+.+++.++..++....+.+++.||+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~  376 (502)
T TIGR01695       297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT  376 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence            99999999999999999999999999999999998865    67888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802          166 VYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDV  217 (233)
Q Consensus       166 ~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~  217 (233)
                      +.++.......++++++++++.+.+|..|+|+++.+++.+..+...++++|+
T Consensus       377 ~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~  428 (502)
T TIGR01695       377 RTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRR  428 (502)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998888889999999998889999999999999999999888888774

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.86  E-value=3.9e-19  Score=158.98  Aligned_cols=203  Identities=13%  Similarity=0.126  Sum_probs=178.0

Q ss_pred             CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc----Cc---hHHHHH----HHHHHHHHHHHHhHHHHHHHHHHH
Q 026802           11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL----GS---IPMAAF----QICLQVWLTSSLLADGLAVAGQAI   79 (233)
Q Consensus        11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l----g~---~~lAa~----~i~~~~~~~~~~~~~g~~~a~~~~   79 (233)
                      .|++.+|++++.+.|..++++.......+|+.++++.    |.   ++.+.+    +++.++.++...+..+++.+..|.
T Consensus       219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~  298 (488)
T TIGR02900       219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPD  298 (488)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999998764    32   222333    344566677777889999999999


Q ss_pred             HhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 026802           80 LAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVN  159 (233)
Q Consensus        80 i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l  159 (233)
                      ++|+.|+||+|+.++..++...++..++++.++.+..+++++..+|.++++    +..++.+.++..++..++...++++
T Consensus       299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l  374 (488)
T TIGR02900       299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSIL  374 (488)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998876554    5678999999999999999999999


Q ss_pred             hhcCchHHHHHHHHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802          160 FGASDFVYSAYSMVLVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRDV  217 (233)
Q Consensus       160 ~g~g~~~~~~~~~~~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~  217 (233)
                      ++.||++.+++..+...++++++++++.  +.+|..|+|+++.+++.+..+...++.+|.
T Consensus       375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~  434 (488)
T TIGR02900       375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN  434 (488)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888899999998876  889999999999999999999988888774

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.82  E-value=1.2e-17  Score=146.86  Aligned_cols=204  Identities=10%  Similarity=-0.011  Sum_probs=175.0

Q ss_pred             CCCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHhHHhh
Q 026802            8 PPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAA-TLGSIPMAAFQICLQVWLT-SSLLADGLAVAGQAILAGAFA   85 (233)
Q Consensus         8 ~~~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~-~lg~~~lAa~~i~~~~~~~-~~~~~~g~~~a~~~~i~~~~G   85 (233)
                      +.+.|++.+|++++.|.|..+++....+....++.+++ ++|++++++|+++.++.+. ...+..+++++..|.++|+  
T Consensus       206 ~~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~--  283 (416)
T PRK15099        206 KPSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL--  283 (416)
T ss_pred             hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            34578888999999999999999999999999999996 8899999999999999774 5789999999999999995  


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802           86 EKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF  165 (233)
Q Consensus        86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~  165 (233)
                       +|+||.++..++.......++++.+...+++++++..+|..|+  .+.+.+++++.+++.++...+......+-..+++
T Consensus       284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~  360 (416)
T PRK15099        284 -TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASL  360 (416)
T ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             7889999999999999999999999888899999999998765  2225667788777777776666666656666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          166 VYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       166 ~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      +......+....+++|+++++.+.+|..|++++..+++.+.++.......+
T Consensus       361 ~~~~~~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~~  411 (416)
T PRK15099        361 RFYILAEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFLL  411 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777778888999999999999999999999999999998877665554

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.78  E-value=2.6e-19  Score=158.83  Aligned_cols=211  Identities=17%  Similarity=0.192  Sum_probs=196.7

Q ss_pred             cHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802           13 DLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGS--IPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK   90 (233)
Q Consensus        13 ~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~--~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~   90 (233)
                      .+.++++++.++|.+++...+...+.+.....|.+++  .++++.+++.++....++...|++.|+++++++.+|+||++
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~  322 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK  322 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence            6779999999999999999999999999999999985  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802           91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY  170 (233)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  170 (233)
                      ++|..+..+...++..++..+..++..++.+..+|++|+|+.+...+..++.+...+.+..+.+.+|+.||.|..+...+
T Consensus       323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~  402 (473)
T KOG1347|consen  323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV  402 (473)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHH-HHHHHHHHHHHHH--hccCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhh
Q 026802          171 SMV-LVAIASIASIFVL--SKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGR  229 (233)
Q Consensus       171 ~~~-~~~~~~i~l~~~~--~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  229 (233)
                      +.+ ...++.+|...++  ..++|+.|+|.++..+..+..........+      .+|++.-
T Consensus       403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~------tdW~~~~  458 (473)
T KOG1347|consen  403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTAR------TDWKNQA  458 (473)
T ss_pred             EeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheee------ccHHHHH
Confidence            865 4567888887776  468999999999999977788888888787      8888763

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.75  E-value=1.8e-15  Score=134.55  Aligned_cols=208  Identities=15%  Similarity=0.126  Sum_probs=193.1

Q ss_pred             CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhHHhhcCCH
Q 026802           11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSS-LLADGLAVAGQAILAGAFAEKDY   89 (233)
Q Consensus        11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~-~~~~g~~~a~~~~i~~~~Ga~~~   89 (233)
                      .+.++.|++++...|..+.....+....++..+.+.+++-++++.+-+.++.++-. .+..++++..-|..++..-+||.
T Consensus       192 ~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~  271 (451)
T PF03023_consen  192 WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW  271 (451)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            44567999999999999999999999999999999999999999999999999866 57789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc---C-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802           90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFS---K-DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF  165 (233)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~---~-~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~  165 (233)
                      ++.++..++++.....+.++..+.+..++++++.+.-   + |+|-.+...+.+.+.+++.|+.+++.++...+-+.+|+
T Consensus       272 ~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~  351 (451)
T PF03023_consen  272 EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDT  351 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCc
Confidence            9999999999999999999999999999999888773   1 66667888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026802          166 VYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVY  218 (233)
Q Consensus       166 ~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~  218 (233)
                      +.++...+.+.++++.+++++.+.+|..|+.+++.++..+..+..+++++|+.
T Consensus       352 ~~~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~  404 (451)
T PF03023_consen  352 KTPVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRL  404 (451)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999998888743

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR01695 mviN integral membrane protein MviN

Probab=99.73  E-value=2.8e-15  Score=134.63  Aligned_cols=195  Identities=17%  Similarity=0.090  Sum_probs=157.5

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHh-cCchHH-HHHHHHHHHHHHHHHhHH--HHHHHHHHHHhHHhhcCCH-HHHH
Q 026802           19 FLKNGFWLLTRVIAVTICVTLAASRAAT-LGSIPM-AAFQICLQVWLTSSLLAD--GLAVAGQAILAGAFAEKDY-KKAT   93 (233)
Q Consensus        19 ~l~~g~P~~~~~~~~~~~~~~~~~~~~~-lg~~~l-Aa~~i~~~~~~~~~~~~~--g~~~a~~~~i~~~~Ga~~~-~~~~   93 (233)
                      ++|-..=.++.++......+++..++++ +|++++ ++++++.++.+.+..+..  |++++   .+++..|+++. |+++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a---~i~~~~~~~~~~~~~~   78 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSA---FVPVFTKAKKKEKEAR   78 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhhhhHHH
Confidence            4566667788899999999999999998 799999 799999999888766544  45555   55555555554 5888


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccc--cCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802           94 LAATRVLQMGFIL-GLGLALVVGLGLYFGSGIF--SKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY  170 (233)
Q Consensus        94 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~lf--~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  170 (233)
                      +....+....... ++++..+.+++++++..++  +.|+|..+.+.+|+++.+++.|+..+..+.++++|+.||.+.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  158 (502)
T TIGR01695        79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF  158 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence            7777766655544 4455677788899999988  457888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCChHHHH--HHHHHHHHHHHHHHHHHHhh
Q 026802          171 SMVLVAIASIASIFVLSKASGFVGIW--VALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       171 ~~~~~~~~~i~l~~~~~~~~g~~G~~--~a~~~~~~~~~~~~~~~~~~  216 (233)
                      ..+...++++...+++.+++|..|+.  +++.+++.+..+..++++++
T Consensus       159 ~~i~~~i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  206 (502)
T TIGR01695       159 SPILFNIGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK  206 (502)
T ss_pred             HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            97777677776666667889999988  99999999888877776655

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.73  E-value=3.8e-16  Score=138.74  Aligned_cols=203  Identities=12%  Similarity=0.037  Sum_probs=190.1

Q ss_pred             cHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHhHHhhcCCHHH
Q 026802           13 DLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTS-SLLADGLAVAGQAILAGAFAEKDYKK   91 (233)
Q Consensus        13 ~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~-~~~~~g~~~a~~~~i~~~~Ga~~~~~   91 (233)
                      .++.|++.+++.|..+..+.+.....+.+.++||+|+.++|+.+++.++.+.+ +.+..|+..+..|+.+|++|+++++.
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~  103 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA  103 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence            47789999999999999999999999999999999999999999999999985 66999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802           92 ATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS  171 (233)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~  171 (233)
                      ...+..++..+-...++.+..+.. +.+++...+++||++...+..|.++..+..+.......+.-.+|+++++....++
T Consensus       104 lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~  182 (473)
T KOG1347|consen  104 LGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI  182 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence            999999999999999999888777 5699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH--hccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          172 MVLVAIASIASIFVL--SKASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       172 ~~~~~~~~i~l~~~~--~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      .....++++++.|++  .+++|..|+..+..+++........+|...
T Consensus       183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~  229 (473)
T KOG1347|consen  183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL  229 (473)
T ss_pred             HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence            999999999999988  568999999999999999888877777654

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.71  E-value=7e-16  Score=131.86  Aligned_cols=134  Identities=32%  Similarity=0.345  Sum_probs=128.0

Q ss_pred             CCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCC
Q 026802            9 PSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKD   88 (233)
Q Consensus         9 ~~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~   88 (233)
                      .+.+++..|++++.|.|..++++.......+++.+++++|++++++++++.++.++...+..+++++..+.++|++|+||
T Consensus       208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  287 (342)
T TIGR00797       208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGD  287 (342)
T ss_pred             cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHH
Q 026802           89 YKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFV  142 (233)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~  142 (233)
                      .|+.++..+++....+.++++.....+.+++++.++|++|||+.+.+..++++.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       288 PKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.69  E-value=7.4e-15  Score=131.40  Aligned_cols=193  Identities=20%  Similarity=0.213  Sum_probs=163.5

Q ss_pred             HhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhHHhhcCCHHHHHHHHH
Q 026802           20 LKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLA-DGLAVAGQAILAGAFAEKDYKKATLAAT   97 (233)
Q Consensus        20 l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~-~g~~~a~~~~i~~~~Ga~~~~~~~~~~~   97 (233)
                      .+.+.|.++.+........+++.+++|+ |+++.++++.+.++.+++..+. .|++.+....++|+.|++|++++++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            4678999999999999999999999985 9999999999999998887765 5999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 026802           98 RVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAI  177 (233)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~  177 (233)
                      .+..+....+++++++.+.+.+.+...+.+|++..    .++++.++..++..+..+.++++||.+|.+..+...+...+
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i  157 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI  157 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence            99999999999999999889999988777776543    46778888999999999999999999999999988777666


Q ss_pred             HHHHHHHHH-------hccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          178 ASIASIFVL-------SKASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       178 ~~i~l~~~~-------~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      +++.+...+       ..+.++.|..++..+++.+..+..++++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~  203 (488)
T TIGR02900       158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKR  203 (488)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665443222       224567788888888888888877666554

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.63  E-value=5.3e-13  Score=118.79  Aligned_cols=207  Identities=14%  Similarity=0.073  Sum_probs=190.7

Q ss_pred             CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhHHhhcCCH
Q 026802           11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSS-LLADGLAVAGQAILAGAFAEKDY   89 (233)
Q Consensus        11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~-~~~~g~~~a~~~~i~~~~Ga~~~   89 (233)
                      +|.+..|++++...|..+.....++...+++.+.+.+.+-+++...-+.++.++=. .+..++++..-+..+++..++|.
T Consensus       226 ~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~  305 (518)
T COG0728         226 FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW  305 (518)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence            55578999999999999999999999999999999999999999999999999954 79999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC----CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802           90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSK----DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF  165 (233)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~  165 (233)
                      ++.++..+.++.++..+.++.+..++.+++++..+.-.    +++-.....+.+..++.+.++..+.-++.-.+-+.+|+
T Consensus       306 ~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~  385 (518)
T COG0728         306 PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDT  385 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence            99999999999999999999999999999999987622    45556778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802          166 VYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDV  217 (233)
Q Consensus       166 ~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~  217 (233)
                      |.|+.+.+.+.++|+.++..+.+.+|..|++.+..++..+.....++.++|+
T Consensus       386 ktP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~  437 (518)
T COG0728         386 KTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKR  437 (518)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998888899999999999988888887777777764

>PRK15099 O-antigen translocase; Provisional

Probab=99.63  E-value=4.7e-14  Score=124.15  Aligned_cols=191  Identities=16%  Similarity=0.080  Sum_probs=155.8

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHHhhcCCHHHHHHHH
Q 026802           19 FLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLL-ADGLAVAGQAILAGAFAEKDYKKATLAA   96 (233)
Q Consensus        19 ~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~-~~g~~~a~~~~i~~~~Ga~~~~~~~~~~   96 (233)
                      +.|........+........+.....+|+ |+++.+..+...++..++..+ ..|++++.+..++|+  ++|+|+++++.
T Consensus         3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~   80 (416)
T PRK15099          3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV   80 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence            45666677777888887777777666655 999999999999988877665 888889989999998  78999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHH
Q 026802           97 TRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVA  176 (233)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~  176 (233)
                      +.++.+....+++++++.+++.+++...+.+|||.    ..++.+..+..+...+.+...+++||.||++.++...+.+.
T Consensus        81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~  156 (416)
T PRK15099         81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS  156 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998878777753    24555556666667888899999999999999998888888


Q ss_pred             HHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          177 IASIASIFVLS-KASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       177 ~~~i~l~~~~~-~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      ++++.+ +++. ...|+.|+.+++.+++.+..+...+++++
T Consensus       157 ~~~i~l-~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~~  196 (416)
T PRK15099        157 LIGVAA-YYLCYRLGGYEGALLGLALVPALVVLPAGIMLIR  196 (416)
T ss_pred             HHHHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888776 3333 23499999999999999987766655544

>PRK10459 colanic acid exporter; Provisional

Probab=99.61  E-value=6.4e-13  Score=119.28  Aligned_cols=202  Identities=11%  Similarity=0.089  Sum_probs=171.6

Q ss_pred             CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHhhcCC
Q 026802           11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSL-LADGLAVAGQAILAGAFAEKD   88 (233)
Q Consensus        11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~-~~~g~~~a~~~~i~~~~Ga~~   88 (233)
                      .|++..|++++.+.|...++........+|..+++++ |+++++.|+.+.++.+.... +...++...-|..++.  ++|
T Consensus       201 ~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~  278 (492)
T PRK10459        201 FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD  278 (492)
T ss_pred             ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC
Confidence            5677899999999999999999999999999998876 89999999999998876443 4444666677778775  678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHH
Q 026802           89 YKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYS  168 (233)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~  168 (233)
                      .++.++..++.......+++++.+.+.+..+++..++-.|+  .+.+...+.+.++...+..+......++++.||++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~  356 (492)
T PRK10459        279 TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS  356 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence            89999999999999999999888888888888776654433  3557788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          169 AYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       169 ~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      +...+....+.+|..+.+...+|..|+.+++.+++.+......++.++
T Consensus       357 ~~~~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~  404 (492)
T PRK10459        357 FKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLMIK  404 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888899988888888899999999999999888888877744

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.57  E-value=1.1e-12  Score=117.24  Aligned_cols=185  Identities=13%  Similarity=0.061  Sum_probs=170.9

Q ss_pred             cHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHH
Q 026802           13 DLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKK   91 (233)
Q Consensus        13 ~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~   91 (233)
                      ++..+++++.+.|..+.+........+|+.+++++ |+++++-|+.+.++......+...++...-|.+++...+||.++
T Consensus       209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~  288 (480)
T COG2244         209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKA  288 (480)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            68899999999999999999999999999998877 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802           92 ATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS  171 (233)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~  171 (233)
                      .++..+++......++++..+....+.+++..++..++...  +...+.+.++..++..+.......+++.|+++..+..
T Consensus       289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  366 (480)
T COG2244         289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLI  366 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence            99999999999999999999999999988888775544322  7778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCChHHHHHHH
Q 026802          172 MVLVAIASIASIFVLSKASGFVGIWVAL  199 (233)
Q Consensus       172 ~~~~~~~~i~l~~~~~~~~g~~G~~~a~  199 (233)
                      ......+++.+++.+.+..|..|...+.
T Consensus       367 ~~~~~i~~~~l~~~li~~~g~~g~~~a~  394 (480)
T COG2244         367 SLISALLNLILNLLLIPRFGLIGAAIAT  394 (480)
T ss_pred             HHHHHHHHHHHHhHHHHhhhhhhHHHHH
Confidence            9888899999999999999999998888

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.29  E-value=1.1e-09  Score=97.50  Aligned_cols=172  Identities=19%  Similarity=0.143  Sum_probs=149.1

Q ss_pred             HhcCc-hHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026802           45 ATLGS-IPMAAFQICLQVWLTSSLLA--DGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFG  121 (233)
Q Consensus        45 ~~lg~-~~lAa~~i~~~~~~~~~~~~--~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  121 (233)
                      ..+|+ .+..|+.++.++-++.....  .+++++.-|...+.. ++++|++++..+..........++++++..++++++
T Consensus         3 ~~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~i   81 (451)
T PF03023_consen    3 YFFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPI   81 (451)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45675 55669999999999998644  358899999999999 999999999999999999999999999999999999


Q ss_pred             hccccC--CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCC---hHHHH
Q 026802          122 SGIFSK--DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASG---FVGIW  196 (233)
Q Consensus       122 ~~lf~~--~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~i~l~~~~~~~~g---~~G~~  196 (233)
                      ..++..  |+|..+.+.+++++..+..++.++..+..+++++.+|-..+....+...+..+...+++....|   +.++.
T Consensus        82 v~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~~~~~i~~la  161 (451)
T PF03023_consen   82 VRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNSWGQENIYALA  161 (451)
T ss_pred             HHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence            999854  7899999999999999999999999999999999999999988877666666665556666677   88899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 026802          197 VALTIYMGLRTFAGVWRMRDV  217 (233)
Q Consensus       197 ~a~~~~~~~~~~~~~~~~~~~  217 (233)
                      ++..++...+.+......++.
T Consensus       162 ~g~~~g~~~~~l~~l~~~~~~  182 (451)
T PF03023_consen  162 WGVLIGAIIQFLIQLPYLRRF  182 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            999999999998888887773

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=98.73  E-value=1.7e-05  Score=65.03  Aligned_cols=188  Identities=21%  Similarity=0.256  Sum_probs=121.7

Q ss_pred             HhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHHhhcCCHHHHHHHHH
Q 026802           20 LKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLL-ADGLAVAGQAILAGAFAEKDYKKATLAAT   97 (233)
Q Consensus        20 l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~-~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~   97 (233)
                      +|...-....+.......++...++.|. |+++..-++...++.+++..+ -.|+.++..-.++++..+  .++.+.+..
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~   79 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence            3455566677777777777777776655 999999999999999887764 788888877777766555  344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 026802           98 RVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAI  177 (233)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~  177 (233)
                      .........++++........     .+.+ ++....   +........+.........+++++.++.+......+...+
T Consensus        80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (273)
T PF01943_consen   80 SVLFLLLIFSLIFLLILLIAS-----FFGN-PSLSLI---LIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL  150 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HcCC-chHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444443333333222     3333 332221   1222222226778888899999999999988777776666


Q ss_pred             HHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026802          178 ASIASIFVL-SKASGFVGIWVALTIYMGLRTFAGVWRMRDVY  218 (233)
Q Consensus       178 ~~i~l~~~~-~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~  218 (233)
                      ..+.....+ ..+.+..+...+..++..+..+...++.+++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (273)
T PF01943_consen  151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKL  192 (273)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665544444 33444888888888888888888887777643

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.69  E-value=2.4e-05  Score=70.30  Aligned_cols=208  Identities=15%  Similarity=0.068  Sum_probs=155.1

Q ss_pred             HHHhhcHHHHHHHH-HHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHhHHhhcCCHHHHH
Q 026802           18 RFLKNGFWLLTRVI-AVTICVTLAASRAATLGS-IPMAAFQICLQVWLTSSLLA--DGLAVAGQAILAGAFAEKDYKKAT   93 (233)
Q Consensus        18 ~~l~~g~P~~~~~~-~~~~~~~~~~~~~~~lg~-~~lAa~~i~~~~~~~~~~~~--~g~~~a~~~~i~~~~Ga~~~~~~~   93 (233)
                      +++|-+.-.+...+ +...+..=++.+...+|+ ....|+.++.++=|++--..  ..++++--|.-.++..++..|+++
T Consensus         8 sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~   87 (518)
T COG0728           8 SLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAAR   87 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHH
Confidence            33333333333333 445566666777778897 77789999999999986644  345799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccccC--CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802           94 LAATRVLQMGFILGLGLALVVGLGLYFGS-GIFSK--DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY  170 (233)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~--~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  170 (233)
                      +..+...-....+.++..++..++.+.+. .+++.  |++....+....++..+..++.++.....++++..++-..+.+
T Consensus        88 ~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~  167 (518)
T COG0728          88 FFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAF  167 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhh
Confidence            99988887777777888888888899998 55554  3555557889999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHhc-cCC-hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 026802          171 SMVLVAIASIASIFVLSK-ASG-FVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQW  225 (233)
Q Consensus       171 ~~~~~~~~~i~l~~~~~~-~~g-~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~w  225 (233)
                      .-+...+..|....++.+ ..+ ..+..+++.++-+++.++.+..++|.......+|
T Consensus       168 aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~  224 (518)
T COG0728         168 APVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRF  224 (518)
T ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCC
Confidence            865555555533333322 233 5566778889999999999998888543333444

>PRK10459 colanic acid exporter; Provisional

Probab=98.65  E-value=7.9e-06  Score=73.50  Aligned_cols=184  Identities=10%  Similarity=0.038  Sum_probs=128.0

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHhhcCCHHHHHH
Q 026802           17 SRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSL-LADGLAVAGQAILAGAFAEKDYKKATL   94 (233)
Q Consensus        17 ~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~-~~~g~~~a~~~~i~~~~Ga~~~~~~~~   94 (233)
                      ++..+-+....+.+.......++....++|+ |+++...++....+..++.. .-.|++++.    .|. .+.+.    +
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~-~~~~~----~   75 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR-QDISH----L   75 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc-ccCCH----H
Confidence            5677778888888888888888887777766 99999999999998888765 445776654    221 11122    2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHH
Q 026802           95 AATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVL  174 (233)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~  174 (233)
                      .......+....++++.++.+++.+++...|. +|+.    ...+.+.++..++..+.....+.+++..+.+........
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~  150 (492)
T PRK10459         76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS  150 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence            33445556666677777777777888877664 4443    345677777777788888899999999999877766555


Q ss_pred             HHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHH
Q 026802          175 VAIASIASIFVL-SKASGFVGIWVALTIYMGLRTFAGVWRM  214 (233)
Q Consensus       175 ~~~~~i~l~~~~-~~~~g~~G~~~a~~~~~~~~~~~~~~~~  214 (233)
                      ..+........+ ..+.|..+..++..+++.+..+......
T Consensus       151 ~~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~  191 (492)
T PRK10459        151 AVVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLLFGYFG  191 (492)
T ss_pred             HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            544444443333 4578888888888888877766554433

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.56  E-value=7.8e-07  Score=66.72  Aligned_cols=83  Identities=14%  Similarity=0.152  Sum_probs=76.8

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026802          139 IPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVY  218 (233)
Q Consensus       139 l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~  218 (233)
                      +.+.+++.++..+....+.++++.||++..+...+....+++++++.+.+.+|..|+.+++.+++........++.+|+.
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~   81 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKKI   81 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999888865


Q ss_pred             ccc
Q 026802          219 DKS  221 (233)
Q Consensus       219 ~~~  221 (233)
                      +.+
T Consensus        82 ~~~   84 (146)
T PF14667_consen   82 GIK   84 (146)
T ss_pred             CCC
Confidence            444

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=98.50  E-value=0.0001  Score=59.85  Aligned_cols=167  Identities=17%  Similarity=0.158  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026802           36 CVTLAASRAAT-LGSIPMAAFQICLQVWLTSSLL-ADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALV  113 (233)
Q Consensus        36 ~~~~~~~~~~~-lg~~~lAa~~i~~~~~~~~~~~-~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (233)
                      .+++....++| +|+++.+.++....+..+...+ ..|+......     ..++|+++.++..+.........++++.++
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL   77 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555 4999999999999999988775 4555444333     344677777777777776655555554444


Q ss_pred             HHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHH-HHHhccCCh
Q 026802          114 VGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASI-FVLSKASGF  192 (233)
Q Consensus       114 ~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~i~l~-~~~~~~~g~  192 (233)
                      ......    .+ ++++.    ..++...+...+...+.....+.+++.+|.+................. .....+.+.
T Consensus        78 ~~~~~~----~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (251)
T PF13440_consen   78 AILIAY----FF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNL  148 (251)
T ss_pred             HHHHHH----Hh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            332222    33 34433    234556667778889999999999999999998777665555443322 222334488


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 026802          193 VGIWVALTIYMGLRTFAGVWRMRD  216 (233)
Q Consensus       193 ~G~~~a~~~~~~~~~~~~~~~~~~  216 (233)
                      .+..++..++..+..+..+...++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~  172 (251)
T PF13440_consen  149 WSILLAFIISALLALLISFYLLRR  172 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888888888888777666654443

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.18  E-value=0.00013  Score=66.49  Aligned_cols=205  Identities=13%  Similarity=0.071  Sum_probs=156.5

Q ss_pred             HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHh--c-CchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHhHHhhcCCH--
Q 026802           16 FSRFLKNGFWLLTRVIAVTICVTLAASRAAT--L-GSIPMAAFQICLQVWLTS-SLLADGLAVAGQAILAGAFAEKDY--   89 (233)
Q Consensus        16 ~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~--l-g~~~lAa~~i~~~~~~~~-~~~~~g~~~a~~~~i~~~~Ga~~~--   89 (233)
                      -++.+++......|.....+...-+-.++..  + ..++.+.|+++.+.-++. -.++..+-.+.-..-++....++.  
T Consensus       252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~  331 (549)
T PF04506_consen  252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK  331 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence            5888999999999999999988888877777  4 569999999999998886 446667888888888888765433  


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 026802           90 -------KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGA  162 (233)
Q Consensus        90 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~  162 (233)
                             +++.+.....+++...++++...+.....+.++.++..+.=....+.+.++..|...|+.+++.+.+++.++.
T Consensus       332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~  411 (549)
T PF04506_consen  332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV  411 (549)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence                   3456666667777777776666666666677777764322122224677899999999999999999999999


Q ss_pred             CchHHHHHH---HHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 026802          163 SDFVYSAYS---MVLVAIASIASIFVLSK-ASGFVGIWVALTIYMGLRTFAGVWRMRDVYDK  220 (233)
Q Consensus       163 g~~~~~~~~---~~~~~~~~i~l~~~~~~-~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (233)
                      .+++....-   +....++.+...+++.. ++|..|.-+|..+...+|.+..+.++++..++
T Consensus       412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~  473 (549)
T PF04506_consen  412 ASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRRYFRN  473 (549)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998876433   34445666667777755 79999999999999999999998888774443

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.14  E-value=0.0018  Score=54.38  Aligned_cols=157  Identities=10%  Similarity=0.091  Sum_probs=111.3

Q ss_pred             CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCC
Q 026802           12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGS---IPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKD   88 (233)
Q Consensus        12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~---~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~   88 (233)
                      ....++++.+.-+|.+++.....++--+.+..+++-.+   +.+|+++++.++.-++-.+...+-+.+..++.+.     
T Consensus         6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~-----   80 (345)
T PF07260_consen    6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK-----   80 (345)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch-----
Confidence            34568999999999999999999999999999988543   4499999999999999999999988877776552     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchH
Q 026802           89 YKKATLAATRVLQMGFILGLGLALVV--GLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFV  166 (233)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~  166 (233)
                      .+|-|.+... ...+.+..++...+.  -+..--+-.++..||++.+.++..+.++....+++++.....|++-=..++.
T Consensus        81 rsrr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~  159 (345)
T PF07260_consen   81 RSRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW  159 (345)
T ss_pred             hhhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence            3332222222 222222211111111  1122234456788999999999999999999999999999999998555544


Q ss_pred             HHHHHHHH
Q 026802          167 YSAYSMVL  174 (233)
Q Consensus       167 ~~~~~~~~  174 (233)
                      .....++.
T Consensus       160 iV~~aSI~  167 (345)
T PF07260_consen  160 IVGSASIA  167 (345)
T ss_pred             EeehHHHH
Confidence            44333443

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.10  E-value=0.00064  Score=60.90  Aligned_cols=151  Identities=22%  Similarity=0.206  Sum_probs=114.8

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhHHhhcCCHHH
Q 026802           14 LQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLA-DGLAVAGQAILAGAFAEKDYKK   91 (233)
Q Consensus        14 ~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~-~g~~~a~~~~i~~~~Ga~~~~~   91 (233)
                      ...++..|...-....+........+.....+|. |+++...++.+.++..++..+. .|+..+..-.++++...++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~   82 (480)
T COG2244           3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL   82 (480)
T ss_pred             hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence            3467788888888888888888888877665554 9999999999999999988866 8999999888999988888888


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802           92 ATLA-ATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY  170 (233)
Q Consensus        92 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  170 (233)
                      .+.. ...........+.+.........+.       +++    ....+.+.....+.........+.+|+.++.+....
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (480)
T COG2244          83 LILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLAL  151 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence            7777 6666555555555544444433222       232    344567788888999999999999999999998877


Q ss_pred             HHHHH
Q 026802          171 SMVLV  175 (233)
Q Consensus       171 ~~~~~  175 (233)
                      ..+..
T Consensus       152 ~~~~~  156 (480)
T COG2244         152 SIVSS  156 (480)
T ss_pred             HHHHH
Confidence            74433

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.47  E-value=0.014  Score=51.42  Aligned_cols=173  Identities=12%  Similarity=0.102  Sum_probs=125.4

Q ss_pred             CchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHhHHhhcCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 026802           48 GSIPMAAFQICLQVWLTS-SLLADGLAVAGQAILAGAFAEKDYKKATLAA---TRVLQMGFILGLGLALVVGLGLYFGSG  123 (233)
Q Consensus        48 g~~~lAa~~i~~~~~~~~-~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~  123 (233)
                      +-.+.+.|.+..+.-++. -.++..+--..-..-+|..-.++.|+.|+..   ...+++...++++........++.++.
T Consensus       273 s~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~  352 (530)
T KOG2864|consen  273 SFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLL  352 (530)
T ss_pred             CcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHH
Confidence            334566777776666554 4466677777788888888776666666544   455555555665555555556667777


Q ss_pred             cccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHH---HHHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q 026802          124 IFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSA---YSMVLVAIASIASIFVLSKASGFVGIWVALT  200 (233)
Q Consensus       124 lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~---~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~  200 (233)
                      +++.+.=....+...+++.|...|+.+++.+.+++..+.++.+..-   ..+....++.+.++|++...+|..|.-.|..
T Consensus       353 lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANi  432 (530)
T KOG2864|consen  353 LYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANI  432 (530)
T ss_pred             HHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            7754332233345789999999999999999999999999888664   3345556777788898877788899999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcc
Q 026802          201 IYMGLRTFAGVWRMRDVYDK  220 (233)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~  220 (233)
                      +.+.+|.+..+.++++.+++
T Consensus       433 iNm~lRIlys~~fI~~~yr~  452 (530)
T KOG2864|consen  433 INMSLRILYSLRFIRHYYRD  452 (530)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            99999999888777765444

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.35  E-value=0.002  Score=52.60  Aligned_cols=74  Identities=11%  Similarity=0.123  Sum_probs=69.2

Q ss_pred             CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 026802           10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGA   83 (233)
Q Consensus        10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~   83 (233)
                      ..+++..|++++.+.|..+.++...+....|..+++++ |+++++-|+++.++......+...+.+...|..++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l  272 (273)
T PF01943_consen  198 FFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL  272 (273)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34578899999999999999999999999999999987 899999999999999999999999999999998875

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=95.97  E-value=0.095  Score=42.20  Aligned_cols=67  Identities=15%  Similarity=0.169  Sum_probs=61.4

Q ss_pred             HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhH
Q 026802           16 FSRFLKNGFWLLTRVIAVTICVTLAASRAAT-LGSIPMAAFQICLQVWLTSS-LLADGLAVAGQAILAG   82 (233)
Q Consensus        16 ~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~-lg~~~lAa~~i~~~~~~~~~-~~~~g~~~a~~~~i~~   82 (233)
                      .++.++.+.|....++......-.+..+++. +|+++++.++++.++..... .+..++++...|.++|
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar  250 (251)
T PF13440_consen  182 WRRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR  250 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3348999999999999999999999999998 89999999999999999887 8999999998888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	1e-07

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 15  QFSRFLKNGFWLLTRV---IAVTICV-----TLAASRAATLGSIPMAAFQICLQVWLTSS 66
            F +        L R+   +A  +        + A   A LGS  +AA Q+ L       
Sbjct: 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF 287

Query: 67  LLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFS 126
           +    +  A    +     E+D K A +AA   L  G       AL+  L     + +++
Sbjct: 288 MFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYT 347

Query: 127 KDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASD----FVYSAYSMVLVAI--ASI 180
           ++  V+ L    + F A  Q ++++  V  G   G  D    F  +  S  ++ +    I
Sbjct: 348 ENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYI 407

Query: 181 ASIFVLSKASGF--VGIWVALTIYMGLRTFAGVWRMR 215
             +            G W+   I +         R+ 
Sbjct: 408 LGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY 444

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.96
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.92

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.96  E-value=1e-27  Score=210.63  Aligned_cols=208  Identities=19%  Similarity=0.169  Sum_probs=197.7

Q ss_pred             CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCH
Q 026802           10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDY   89 (233)
Q Consensus        10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~   89 (233)
                      +.|++.+|++++.|.|..++++.+.....+++.+++++|++++|+|+++.++.++...+..+++++..+.++|++|+||+
T Consensus       231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~  310 (460)
T 3mkt_A          231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDT  310 (460)
T ss_dssp             SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHH
Q 026802           90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSA  169 (233)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  169 (233)
                      |++++..+++...+..+++++++.+.++++++..+|++|+|+.+.+..++++.+++.++.+++.+..++++|.||++.++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  390 (460)
T 3mkt_A          311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF  390 (460)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802          170 YSMVL-VAIASIASIFVLSKA-------SGFVGIWVALTIYMGLRTFAGVWRMRDV  217 (233)
Q Consensus       170 ~~~~~-~~~~~i~l~~~~~~~-------~g~~G~~~a~~~~~~~~~~~~~~~~~~~  217 (233)
                      ...+. .+++++|+++++.+.       +|..|+|+++.+++.+..+...+++++.
T Consensus       391 ~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99765 559999999998655       9999999999999999998888877763

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.92  E-value=9.3e-24  Score=185.38  Aligned_cols=205  Identities=17%  Similarity=0.090  Sum_probs=191.8

Q ss_pred             CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHH
Q 026802           12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKK   91 (233)
Q Consensus        12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~   91 (233)
                      .++..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+...+..|++.+..+.++|++|++|+++
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~   86 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHK   86 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence            35679999999999999999999999999999999999999999999999999899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802           92 ATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS  171 (233)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~  171 (233)
                      +++..+.++.+....++++.++ +.+.+++..+++.|+|+.+.+..|+++.+++.++..+....++++||.||++.++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (460)
T 3mkt_A           87 IPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI  165 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            9999999999999999987766 668899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc------cCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802          172 MVLVAIASIASIFVLSK------ASGFVGIWVALTIYMGLRTFAGVWRMRDV  217 (233)
Q Consensus       172 ~~~~~~~~i~l~~~~~~------~~g~~G~~~a~~~~~~~~~~~~~~~~~~~  217 (233)
                      .+...++++++++++..      ++|+.|+++++.+++.+..+...++++++
T Consensus       166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~  217 (460)
T 3mkt_A          166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS  217 (460)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999988853      69999999999999999998888777664

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00