Citrus Sinensis ID: 026816

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHccccHHHHHHHEEEEcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHccccccccccccccccHHHHHHHccccccccccccccccccEEEHHHHHcccccEEEEccccccEEEEEcHHHHHHHHccEEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEccccHccccHHHHHHHHccccHHHHccEEEEEccccccccccccccccccEEEEEEEEEcHccHHHHHHHHHHccccccccccEEEEEccHHHHHHHccccccccccccccccccEEEcHHHHHccccEEEEccccEEEEEEEcHHHHHHHcccEEEEcc
Coil and Loop (DISEMBL)
MEAALAELERVQTEILPRISKLEQTIlsvddddvsssaavpastphttirdtEARLSNILrsngvndfqfkkvpsdyydwplesRRDVLAAACIHHLCKSIVLVNtqaqssvvdcsdrnnskYYVVVVQYTARFNAEAVKNFLYTlnngkipkkkfnlrlapeetsmnltgyehnavtcigmktdipVILDEAITklspdffwlgggetdlkwgiktSEFIKFVKPFIVGCS
Flexible Loop (DISEMBL)
MEAALAELERVQTEILPRISKLEQTILSvddddvsssaavpastphttirdteARLSNILrsngvndfqfkkVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSsvvdcsdrnnsKYYVVVVQYTARFNAEAVKNFLytlnngkipkkKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS
Low Complexity Region (SEG)
MEAALAELERVQTEILPRISKLEQTILsvddddvsssaavpasTPHTTIRDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS
Disordered region (IsUnstruct)
********************************************************SNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGC*
Disordered Region (DISOPRED)
*****AELERVQTEILPRI********************************TEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYT*N*******KFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGC*
Disordered Region (DISEMBL)
MEAALAELERVQTEILPRISKLEQTILSVD****************TTIRDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS
Disordered Region (DISPRO)
*EAALAELERVQTEILPRISKLEQTILSVDD***************TTIRDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
356514256	228	PREDICTED: uncharacterized protein LOC10	0.965	0.982	0.758	2e-97
255569883	233	conserved hypothetical protein [Ricinus	0.995	0.991	0.732	8e-95
224074677	227	predicted protein [Populus trichocarpa]	0.969	0.991	0.741	7e-93
225427015	231	PREDICTED: uncharacterized protein LOC10	0.965	0.969	0.728	1e-92
357476887	234	hypothetical protein MTR_4g101100 [Medic	1.0	0.991	0.728	1e-91
18414678	232	YbaK/aminoacyl-tRNA synthetase-associate	0.974	0.974	0.711	2e-91
297804540	226	hypothetical protein ARALYDRAFT_915095 [	0.974	1.0	0.732	5e-91
449458934	224	PREDICTED: uncharacterized protein LOC10	0.827	0.857	0.768	3e-84
125540579	230	hypothetical protein OsI_08368 [Oryza sa	0.991	1.0	0.612	4e-77
115447745	230	Os02g0662200 [Oryza sativa Japonica Grou	0.991	1.0	0.607	1e-76

>gi|356514256|ref|XP_003525822.1| PREDICTED: uncharacterized protein LOC100815424 [Glycine max]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 176/232 (75%), Positives = 193/232 (83%), Gaps = 8/232 (3%)

Query: 1   MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNIL 60
           ME ALAELERVQT++L RISKLE++ L         S +    T   T  DT ARLS+IL
Sbjct: 3   MEEALAELERVQTQLLQRISKLERSHLP--------SPSSQNDTVEDTATDTVARLSSIL 54

Query: 61  RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
           RSNGV DF FK+VPSDYYDWPLE+RRD L+AA IHHLCKSIVLVNTQA ++VVDCSDR N
Sbjct: 55  RSNGVPDFSFKRVPSDYYDWPLEARRDALSAASIHHLCKSIVLVNTQAPANVVDCSDRKN 114

Query: 121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
           SKYYVVVVQYTARFNAEAVKNFLY+LNNG I KKKFN+RLAPEETSM LTGY HNAVTCI
Sbjct: 115 SKYYVVVVQYTARFNAEAVKNFLYSLNNGSIAKKKFNMRLAPEETSMELTGYGHNAVTCI 174

Query: 181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
           GMKTDIPVILDEAI KL+PDFFWLGGGE DLK GI+TS+ IKF+ PFIV CS
Sbjct: 175 GMKTDIPVILDEAIVKLTPDFFWLGGGEVDLKLGIRTSQLIKFINPFIVNCS 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569883|ref|XP_002525905.1| conserved hypothetical protein [Ricinus communis] gi|223534819|gb|EEF36509.1| conserved hypothetical protein [Ricinus communis]

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 170/232 (73%), Positives = 194/232 (83%), Gaps = 1/232 (0%)

Query: 1   MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNIL 60
           MEA +AELERVQT IL RIS LE+++L   +D V +S    +   +    DTEARLS IL
Sbjct: 1   MEAEVAELERVQTSILHRISMLERSLLH-KNDSVFTSLTPSSRNVNCGGNDTEARLSAIL 59

Query: 61  RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
           +SNGVNDF FK+VPS+YYDW L++RRDVL AA + HLCKSIVLVNTQA S+V+DCS+RNN
Sbjct: 60  KSNGVNDFVFKRVPSNYYDWSLDARRDVLCAASVDHLCKSIVLVNTQAPSNVIDCSNRNN 119

Query: 121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
           SKYYVVVVQY ARFNAE VKN+LY LN+GKI KKKFN+RLAPEETS+ LTGYEHNAVTCI
Sbjct: 120 SKYYVVVVQYNARFNAETVKNYLYALNDGKIAKKKFNMRLAPEETSVQLTGYEHNAVTCI 179

Query: 181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
           GMKTDIPVILDEAI +LSPDFFWLGGGE DLK GI+TSEFI FV+PFI  CS
Sbjct: 180 GMKTDIPVILDEAIARLSPDFFWLGGGEVDLKLGIRTSEFINFVRPFIFSCS 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074677|ref|XP_002304420.1| predicted protein [Populus trichocarpa] gi|222841852|gb|EEE79399.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (886), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 172/232 (74%), Positives = 191/232 (82%), Gaps = 7/232 (3%)

Query: 1   MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNIL 60
           ME  LAELER+QT IL RISKLE ++ + ++++ + SA     T       TEARLS IL
Sbjct: 1   MEPQLAELERLQTRILNRISKLELSLSTQNNNNNNLSACDGGDT-------TEARLSTIL 53

Query: 61  RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
           RSNGVNDF FKKV SDYYDWPLESRRDVL AA I HLCKSIVLVNTQA S++ DCSD NN
Sbjct: 54  RSNGVNDFAFKKVSSDYYDWPLESRRDVLGAASIDHLCKSIVLVNTQAPSNITDCSDCNN 113

Query: 121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
           SKYY+VVVQYTARFNAE VKN+LY LN+GKI KK+FNLRLAPEETSM LTGY HNAVTCI
Sbjct: 114 SKYYIVVVQYTARFNAETVKNYLYALNDGKIAKKRFNLRLAPEETSMKLTGYGHNAVTCI 173

Query: 181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
           GMKT+IPVILDEAI +L+PDFFWLGGGE DLK GI+TSEFI F KPFIV CS
Sbjct: 174 GMKTNIPVILDEAILRLNPDFFWLGGGEIDLKLGIRTSEFIDFAKPFIVSCS 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427015|ref|XP_002271142.1| PREDICTED: uncharacterized protein LOC100255799 [Vitis vinifera] gi|297741180|emb|CBI31911.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/232 (72%), Positives = 186/232 (80%), Gaps = 8/232 (3%)

Query: 4   ALAELERVQTEILPRISKLEQTILS---VDDDDVSSSAAVPASTPHTTIRDTEARLSNIL 60
           AL ELERVQ  +L RI+ LE ++L     D   VSS A +  +       DTEARLS IL
Sbjct: 3   ALEELERVQNRVLQRIASLELSLLPQRFADTLSVSSPAQISDANG-----DTEARLSAIL 57

Query: 61  RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
           R+N V DF FK+VP DYYDWP+E+RRD+L A  +HHLCKSIVLVNTQA S+V DCSDRNN
Sbjct: 58  RANNVRDFAFKRVPFDYYDWPIEARRDILGAPSVHHLCKSIVLVNTQAPSNVTDCSDRNN 117

Query: 121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
           SKYY+VVVQYTARFNAE VKNFLY+LNNGKIPKKKFNLRLAPEE+S  LTGYEHN VTCI
Sbjct: 118 SKYYIVVVQYTARFNAETVKNFLYSLNNGKIPKKKFNLRLAPEESSQKLTGYEHNGVTCI 177

Query: 181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
           GMKTDIPVILDEAI KL  +FFWLGGGE DLK GIKTSEFI FVKPFIV CS
Sbjct: 178 GMKTDIPVILDEAIVKLDSNFFWLGGGEIDLKLGIKTSEFINFVKPFIVSCS 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476887|ref|XP_003608729.1| hypothetical protein MTR_4g101100 [Medicago truncatula] gi|355509784|gb|AES90926.1| hypothetical protein MTR_4g101100 [Medicago truncatula]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/232 (72%), Positives = 188/232 (81%)

Query: 1   MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNIL 60
           ME AL ELERVQT++L RISKLEQ      +  + +       T   T  +T +RLS+IL
Sbjct: 1   MEEALGELERVQTQLLQRISKLEQDSHFPPNPPLINDPHTDTDTETETETETVSRLSSIL 60

Query: 61  RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
            +N VNDF FK+V SDYYDWPLESRRD L AA IHHLCKSIVLVNTQA ++VVDCSDRNN
Sbjct: 61  HTNNVNDFSFKRVASDYYDWPLESRRDALNAASIHHLCKSIVLVNTQAPANVVDCSDRNN 120

Query: 121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
           SKYYVVVVQYTARFNAEAV+NFLY+LNNG I KKKFNLRLAPEE SM LTGY HNAVTCI
Sbjct: 121 SKYYVVVVQYTARFNAEAVRNFLYSLNNGTIAKKKFNLRLAPEEISMELTGYGHNAVTCI 180

Query: 181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
           GMKTDIPVILDEAI KL+PDFFWLGGGE DLK GI+TSE ++F+ PFIV CS
Sbjct: 181 GMKTDIPVILDEAIVKLTPDFFWLGGGEVDLKLGIRTSELLRFINPFIVSCS 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414678|ref|NP_567502.1| YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana] gi|15451034|gb|AAK96788.1| Unknown protein [Arabidopsis thaliana] gi|18377536|gb|AAL66934.1| unknown protein [Arabidopsis thaliana] gi|332658362|gb|AEE83762.1| YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/232 (71%), Positives = 190/232 (81%), Gaps = 6/232 (2%)

Query: 1   MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNIL 60
           ME A AELER+Q EIL +IS LE + L        +S+A P+ +      +T  RLS IL
Sbjct: 7   METAAAELERLQIEILHKISILESSFLP------QNSSAAPSPSLPVDENETVTRLSTIL 60

Query: 61  RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
           +S GVNDF FK+V +DYYDWPLESRRDVL A+ + HLCKSIVLVNTQA S+++DCSD NN
Sbjct: 61  QSGGVNDFCFKRVATDYYDWPLESRRDVLGASSVDHLCKSIVLVNTQAASNILDCSDPNN 120

Query: 121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
           SKYYVVVVQYTARFNAEAVK FLY+LN GKIPKK+FNLRLAPEETS+ LTG+EHN VTCI
Sbjct: 121 SKYYVVVVQYTARFNAEAVKQFLYSLNEGKIPKKRFNLRLAPEETSIKLTGFEHNGVTCI 180

Query: 181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
           GMKT+IPVILDEAITKL PDFFWLGGGE DLK G++TSEF++FVKPFIV CS
Sbjct: 181 GMKTNIPVILDEAITKLKPDFFWLGGGEIDLKLGVRTSEFLEFVKPFIVPCS 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804540|ref|XP_002870154.1| hypothetical protein ARALYDRAFT_915095 [Arabidopsis lyrata subsp. lyrata] gi|297315990|gb|EFH46413.1| hypothetical protein ARALYDRAFT_915095 [Arabidopsis lyrata subsp. lyrata]

 Score =  339 bits (869), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 170/232 (73%), Positives = 192/232 (82%), Gaps = 6/232 (2%)

Query: 1   MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNIL 60
           MEAA AELER+Q EIL RIS LE + L        +S+A P+S+      +T  RLS IL
Sbjct: 1   MEAAAAELERLQIEILHRISVLESSFLP------QNSSAPPSSSLPVDENETVTRLSTIL 54

Query: 61  RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
           RS GVNDF FK+V  DYYDWPLESRR+VL A+ + HLCKSIVLVNTQA S+++DCSDRNN
Sbjct: 55  RSGGVNDFCFKRVAPDYYDWPLESRRNVLGASSVDHLCKSIVLVNTQASSNILDCSDRNN 114

Query: 121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
           SKYYVVVVQYTARFNAEAVK FLY+LN GKIPKK+FNLRLAPEETS+ LTG+EHNAVTCI
Sbjct: 115 SKYYVVVVQYTARFNAEAVKQFLYSLNEGKIPKKRFNLRLAPEETSIKLTGFEHNAVTCI 174

Query: 181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
           GMKT+IPVILDEAITKL PDFFWLGGGE DLK G++TSEF+ FVKPFIV CS
Sbjct: 175 GMKTNIPVILDEAITKLKPDFFWLGGGEIDLKLGVRTSEFLAFVKPFIVPCS 226

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458934|ref|XP_004147201.1| PREDICTED: uncharacterized protein LOC101218396 [Cucumis sativus]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 149/194 (76%), Positives = 166/194 (85%), Gaps = 2/194 (1%)

Query: 41  PASTPHTTIRD--TEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLC 98
           P+S P     D  T ARLS IL +N VNDF FK+VPSDYYDWPLE+RRDVL AA I HLC
Sbjct: 31  PSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLC 90

Query: 99  KSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNL 158
           KSIVLVNTQA S +VDCSDRNNSKYY+VVVQYTA+FNAE +++FLY+LN+GKI KKKFNL
Sbjct: 91  KSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNL 150

Query: 159 RLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTS 218
           RLAPEE S  LTGYEHN VTCIGMKTDIPVILDEAI KL+PD+FWLGGGETDLK GI+TS
Sbjct: 151 RLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTS 210

Query: 219 EFIKFVKPFIVGCS 232
           EFI +VKPFI+ CS
Sbjct: 211 EFINYVKPFIIKCS 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125540579|gb|EAY86974.1| hypothetical protein OsI_08368 [Oryza sativa Indica Group]

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 142/232 (61%), Positives = 174/232 (75%), Gaps = 2/232 (0%)

Query: 1   MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNIL 60
           MEAA A+LE  Q  IL R++ LE          +S SAA       T    TEARLS+IL
Sbjct: 1   MEAAAADLEARQLRILRRVADLELAAQQHRLGALSISAAPSGGEAETGA--TEARLSSIL 58

Query: 61  RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
            + GV DF F++VP+DYYD PLE RRD+L A  ++ LCKSIV+VNTQA + VVDCS+  N
Sbjct: 59  TARGVLDFTFRRVPADYYDRPLEERRDLLRADSVNQLCKSIVMVNTQAAADVVDCSNPKN 118

Query: 121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
           SKYYVVVVQY AR NA+++KNF+Y+LN  +IPKK+FN+RLAPEE S+ LTG+ HNAVTCI
Sbjct: 119 SKYYVVVVQYMARLNADSIKNFIYSLNEKQIPKKRFNMRLAPEEESLKLTGFVHNAVTCI 178

Query: 181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
           GM+TDIPVI+DEAITKL  DFFWLGGGE DLK G++TS+F+   KPF+V CS
Sbjct: 179 GMETDIPVIIDEAITKLDKDFFWLGGGEVDLKLGVRTSQFLNAFKPFVVKCS 230

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115447745|ref|NP_001047652.1| Os02g0662200 [Oryza sativa Japonica Group] gi|49388508|dbj|BAD25632.1| YbaK/prolyl-tRNA synthetase-like [Oryza sativa Japonica Group] gi|50251742|dbj|BAD27675.1| YbaK/prolyl-tRNA synthetase-like [Oryza sativa Japonica Group] gi|113537183|dbj|BAF09566.1| Os02g0662200 [Oryza sativa Japonica Group] gi|125583160|gb|EAZ24091.1| hypothetical protein OsJ_07829 [Oryza sativa Japonica Group] gi|215693223|dbj|BAG88605.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 141/232 (60%), Positives = 174/232 (75%), Gaps = 2/232 (0%)

Query: 1   MEAALAELERVQTEILPRISKLEQTILSVDDDDVSSSAAVPASTPHTTIRDTEARLSNIL 60
           M+AA A+LE  Q  IL R++ LE          +S SAA       T    TEARLS+IL
Sbjct: 1   MDAAAADLEARQLRILRRVADLELAAQQHRLGALSISAAPSGGEAETGA--TEARLSSIL 58

Query: 61  RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
            + GV DF F++VP+DYYD PLE RRD+L A  ++ LCKSIV+VNTQA + VVDCS+  N
Sbjct: 59  TARGVLDFTFRRVPADYYDRPLEERRDLLRADSVNQLCKSIVMVNTQAAADVVDCSNPKN 118

Query: 121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
           SKYYVVVVQY AR NA+++KNF+Y+LN  +IPKK+FN+RLAPEE S+ LTG+ HNAVTCI
Sbjct: 119 SKYYVVVVQYMARLNADSIKNFIYSLNEKQIPKKRFNMRLAPEEESLKLTGFVHNAVTCI 178

Query: 181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
           GM+TDIPVI+DEAITKL  DFFWLGGGE DLK G++TS+F+   KPF+V CS
Sbjct: 179 GMETDIPVIIDEAITKLDKDFFWLGGGEVDLKLGVRTSQFLNAFKPFVVKCS 230

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2130749	232	AT4G16510 "AT4G16510" [Arabido	0.974	0.974	0.702	9.4e-82
DICTYBASE|DDB_G0268796	230	DDB_G0268796 [Dictyostelium di	0.737	0.743	0.353	6.8e-24

TAIR|locus:2130749 AT4G16510 "AT4G16510" [Arabidopsis thaliana (taxid:3702)]

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 163/232 (70%), Positives = 184/232 (79%)

Query:     1 MEAALAELERVQTEILPRISKLEQTILXXXXXXXXXXXXXXXXTPHTTIRDTEARLSNIL 60
             ME A AELER+Q EIL +IS LE + L                 P     +T  RLS IL
Sbjct:     7 METAAAELERLQIEILHKISILESSFLPQNSSAAPSPSL-----P-VDENETVTRLSTIL 60

Query:    61 RSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNN 120
             +S GVNDF FK+V +DYYDWPLESRRDVL A+ + HLCKSIVLVNTQA S+++DCSD NN
Sbjct:    61 QSGGVNDFCFKRVATDYYDWPLESRRDVLGASSVDHLCKSIVLVNTQAASNILDCSDPNN 120

Query:   121 SKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCI 180
             SKYYVVVVQYTARFNAEAVK FLY+LN GKIPKK+FNLRLAPEETS+ LTG+EHN VTCI
Sbjct:   121 SKYYVVVVQYTARFNAEAVKQFLYSLNEGKIPKKRFNLRLAPEETSIKLTGFEHNGVTCI 180

Query:   181 GMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIVGCS 232
             GMKT+IPVILDEAITKL PDFFWLGGGE DLK G++TSEF++FVKPFIV CS
Sbjct:   181 GMKTNIPVILDEAITKLKPDFFWLGGGEIDLKLGVRTSEFLEFVKPFIVPCS 232

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0268796 DDB_G0268796 [Dictyostelium discoideum (taxid:44689)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 63/178 (35%), Positives = 99/178 (55%)

Query:    44 TPHTTIRDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVL 103
             TP + I D + R+  +    G+ + +  +VPS YY W L+ R   L A    +L KSI+L
Sbjct:    28 TPPSIITDNQKRIGKVCEEIGL-EHELVRVPSPYYTWTLDQRASYLDAFSPEYLLKSIIL 86

Query:   104 VNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPE 163
              NT+  ++  D S   NS+YY V++QYT +  +  +  F+  +N+ +   KKF+  LA  
Sbjct:    87 ENTECTNT--DTSIPTNSRYYCVIIQYTTKIQSHKIFKFIKNMNSNE-SAKKFHFTLA-- 141

Query:   164 ETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDF-FWLGGGETDLKWGIKTSEF 220
             +++ +LTG+E+NAV  IG    IP+I+ + I  L      +LGGGE DLK  +    F
Sbjct:   142 QSAESLTGFEYNAVCPIGTTVKIPIIISKHIMDLPRGVPVFLGGGEVDLKLVVDIHSF 199


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       216   0.00088  112 3  11 22  0.37    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  175 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.77u 0.16s 16.93t   Elapsed:  00:00:01
  Total cpu time:  16.77u 0.16s 16.93t   Elapsed:  00:00:01
  Start:  Sat May 11 06:39:19 2013   End:  Sat May 11 06:39:20 2013

GO:0006450 "regulation of translational fidelity" evidence=IEA

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
cd04332	136	cd04332, YbaK_like, YbaK-like	4e-20
pfam04073	122	pfam04073, YbaK, YbaK / prolyl-tRNA synthetases as	5e-11
COG2606	155	COG2606, EbsC, Uncharacterized conserved protein [	2e-05
cd00002	152	cd00002, YbaK_deacylase, This CD includes cysteiny	0.004
TIGR00011	152	TIGR00011, YbaK_EbsC, Cys-tRNA(Pro) deacylase	0.004

>gnl|CDD|239824 cd04332, YbaK_like, YbaK-like

 Score = 82.6 bits (205), Expect = 4e-20
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 25/136 (18%)

Query: 95  HHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKK 154
             + K++VL +             +     +VVV      + + +   L           
Sbjct: 26  GQIAKTLVLKD-------------DKGGLVLVVVPGDHELDLKKLAKAL----------G 62

Query: 155 KFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWG 214
              LRLA EE    LTG E   V   G+K  +PV++DE++ +L  +  ++G GE      
Sbjct: 63  AKKLRLASEEELEELTGCEPGGVGPFGLKKGVPVVVDESLLEL--EDVYVGAGERGADLH 120

Query: 215 IKTSEFIKFVKPFIVG 230
           +  ++ ++ +    V 
Sbjct: 121 LSPADLLRLLGEAEVA 136

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX). Length = 136

>gnl|CDD|217873 pfam04073, YbaK, YbaK / prolyl-tRNA synthetases associated domain

 Score = 58.0 bits (141), Expect = 5e-11
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 25/127 (19%)

Query: 97  LCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKF 156
           + K++VL +                +Y +VV+      + + +   L      K      
Sbjct: 21  IAKTLVLKD-------------KKGRYVLVVLPGDRELDLKKLAKAL----GAK------ 57

Query: 157 NLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIK 216
            LRLA EE    LTG E  AV+  G+   +PV++DE++         +G GE      + 
Sbjct: 58  RLRLASEEELAELTGVEPGAVSPFGLANGVPVLIDESLLDY--PDVVVGAGENGATLELS 115

Query: 217 TSEFIKF 223
            ++  K 
Sbjct: 116 NADLRKL 122

This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligo-nucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA. Length = 122

>gnl|CDD|225326 COG2606, EbsC, Uncharacterized conserved protein [Function unknown]

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 29/155 (18%)

Query: 76  DYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFN 135
             Y+    S      AA    +  + V     A++ V+     +     + VV    R  
Sbjct: 18  HVYELD-PSALTGAEAAEALGVDPAQV-----AKTLVLAV---DKGGPALAVVPGDQR-- 66

Query: 136 AEAVKNFLYTLNNGKIPK----KKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILD 191
                     L+  K+ K    KK    +A  E    LTGY    V+  G K  +P  +D
Sbjct: 67  ----------LDLKKLAKALGAKK--AEMADPEEVQRLTGYVVGGVSPFGQKKRLPTYID 114

Query: 192 EAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKP 226
           E+   L  D  ++  G+  L   +   +  + +  
Sbjct: 115 ESA--LRFDTIYVSAGKRGLLVELAPQDLAELLGA 147

Length = 155

>gnl|CDD|237976 cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins

 Score = 36.3 bits (85), Expect = 0.004
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 20/112 (17%)

Query: 119 NNSKYYVVVVQYTARFN----AEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEH 174
           +     V VV      +    A+A+              KK  + +AP + +  LTGY  
Sbjct: 52  DKKGLVVAVVPVDEELDLKKLAKALGA------------KK--VEMAPPKDAERLTGYIR 97

Query: 175 NAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKP 226
             ++ +G K  +P ++DE+   L  D  ++  G+  L+  +   +  K    
Sbjct: 98  GGISPLGQKKRLPTVIDESA--LDLDTIYVSAGKRGLQIELAPQDLAKLTGA 147

These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's. Length = 152

>gnl|CDD|232781 TIGR00011, YbaK_EbsC, Cys-tRNA(Pro) deacylase

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 33/137 (24%)

Query: 94  IHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFN----AEAVKNFLYTLNNG 149
            H + K++V                +     V V+      +    A+A           
Sbjct: 39  PHRVFKTLVAEG-------------DKKGPVVAVIPGDEELDLKKLAKASGG-------- 77

Query: 150 KIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGET 209
               KK    +A  + +  +TGY    ++ IG K   P  +DE+  +L  +  ++ GG+ 
Sbjct: 78  ----KK--AEMADPKDAEKVTGYIRGGISPIGQKKKFPTYIDESAKQL--ETIYVSGGKR 129

Query: 210 DLKWGIKTSEFIKFVKP 226
            L+  +   + I+ +  
Sbjct: 130 GLQIELAPDDLIRLLDG 146

This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434) likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism [Protein synthesis, tRNA aminoacylation]. Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PRK10670	159	hypothetical protein; Provisional	100.0
COG2606	155	EbsC Uncharacterized conserved protein [Function u	99.97
TIGR00011	152	YbaK_EbsC ybaK/ebsC protein. This model represents	99.97
cd04336	153	YeaK YeaK is an uncharacterized Echerichia coli pr	99.97
cd04939	139	PA2301 PA2301 is an uncharacterized Pseudomonas ae	99.97
cd04333	148	ProX_deacylase This CD, composed mainly of bacteri	99.97
cd04335	156	PrdX_deacylase This CD includes bacterial (Agrobac	99.96
cd00002	152	YbaK_deacylase This CD includes cysteinyl-tRNA(Pro	99.96
PF04073	123	tRNA_edit: Aminoacyl-tRNA editing domain; InterPro	99.94
cd04332	136	YbaK_like YbaK-like. The YbaK family of deacylase	99.91
cd04334	160	ProRS-INS INS is an amino acid-editing domain inse	99.86
COG3760	164	Uncharacterized conserved protein [Function unknow	99.75
PRK09194	565	prolyl-tRNA synthetase; Provisional	99.58
TIGR00409	568	proS_fam_II prolyl-tRNA synthetase, family II. Pro	98.53

>PRK10670 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=223.40  Aligned_cols=152  Identities=14%  Similarity=0.255  Sum_probs=133.9

Q ss_pred             HHHHHHHHCCCCceeE--EEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCC
Q 026816           55 RLSNILRSNGVNDFQF--KKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTA  132 (232)
Q Consensus        55 rv~~~L~~~gi~~~~~--~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~  132 (232)
                      ...++|++++| +|++  ..|+... +.+.+++|+.+|++ +++++|||+++.+.           ...+|+++|+++++
T Consensus         3 ~~~~~L~~~~i-~y~~~~~~h~~~~-~~~~~~~a~~lgv~-~~~i~Ktlv~~~~~-----------~~~~~vl~v~~gd~   68 (159)
T PRK10670          3 PAVKLLEKNKI-SFTLHTYEHDPAE-TNFGDEVVRKLGLN-ADQVYKTLLVAVNG-----------DMKHLAVAVTPVAG   68 (159)
T ss_pred             HHHHHHHHCCC-CeEEEeeccCCcc-cchHHHHHHHhCCC-HHHeEEEEEEEecC-----------CCceEEEEEEECCc
Confidence            46789999999 9998  5566554 34578889999998 99999999998532           11249999999999


Q ss_pred             ccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCce
Q 026816          133 RFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLK  212 (232)
Q Consensus       133 rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~  212 (232)
                      ++|++|+++.++.        +  +++||++|++.++|||++|+|||||++.++|+|+|+++.++  +.+|++||.++..
T Consensus        69 ~ld~~kl~~~lg~--------~--~~~~a~~eev~~~tG~~~G~v~P~Gl~~~v~v~vD~~l~~~--~~i~~~aG~~~~~  136 (159)
T PRK10670         69 QLDLKKVAKALGA--------K--KVEMADPMVAQRSTGYLVGGISPLGQKKRLPTVIDAPAQEF--ATIYVSGGKRGLD  136 (159)
T ss_pred             eeCHHHHHHHhCC--------C--CcccCCHHHHHHhhCCccceECccCCCCCCeEEEehHHhcC--CEEEEcCCCCCcE
Confidence            9999999998743        3  38999999999999999999999999999999999999976  8999999999999


Q ss_pred             EeeCHHHHHhhhCCeEeecC
Q 026816          213 WGIKTSEFIKFVKPFIVGCS  232 (232)
Q Consensus       213 l~is~~dl~~l~~~~v~di~  232 (232)
                      +.|+++||.++++|.++||+
T Consensus       137 ~~i~~~dl~~l~~~~~~di~  156 (159)
T PRK10670        137 IELAAGDLAKLLDAKFADIA  156 (159)
T ss_pred             EEECHHHHHHHhCCEEEEEE
Confidence            99999999999999999985

>COG2606 EbsC Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=2.6e-31  Score=220.76  Aligned_cols=148  Identities=19%  Similarity=0.278  Sum_probs=128.1

Q ss_pred             HHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCH
Q 026816           57 SNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNA  136 (232)
Q Consensus        57 ~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~  136 (232)
                      .+.|+.+++ .|++.....+-...+.+++|+.+|++ +++++|||++++++             .+++++|+|+++++|+
T Consensus         5 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~aae~~g~~-~~~i~KTLvl~~~~-------------~~~~~~V~p~~~~Ldl   69 (155)
T COG2606           5 VRLLDKAKI-AFEVHVYELDPSALTGAEAAEALGVD-PAQVAKTLVLAVDK-------------GGPALAVVPGDQRLDL   69 (155)
T ss_pred             HHHHHHhcC-CCceeEEEecCCcccHHHHHHHhCCC-HHHeeEEEEEEcCC-------------CCEEEEEEeCcCccCH
Confidence            345666776 55554444444456688999999997 99999999999752             5899999999999999


Q ss_pred             HHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEeeC
Q 026816          137 EAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIK  216 (232)
Q Consensus       137 kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is  216 (232)
                      ||+++.+|        .|+  ..|+++++++++|||++|||||||+++++|+|+|++++++  +.||++||.++.+|+|+
T Consensus        70 kkla~~~G--------~kk--~~ma~~~~v~~~TGy~vGGv~P~G~~~~~p~~iD~s~~~~--~~I~~~aG~rg~~v~la  137 (155)
T COG2606          70 KKLAKALG--------AKK--AEMADPEEVQRLTGYVVGGVSPFGQKKRLPTYIDESALRF--DTIYVSAGKRGLLVELA  137 (155)
T ss_pred             HHHHHHhC--------Ccc--cccCCHHHHHHHhCCcccCcCCCCcCCCCCEEEehhhhcC--CeEEecCCCcCceEEEC
Confidence            99999864        454  7899999999999999999999999999999999999987  99999999999999999


Q ss_pred             HHHHHhhhCCeEeec
Q 026816          217 TSEFIKFVKPFIVGC  231 (232)
Q Consensus       217 ~~dl~~l~~~~v~di  231 (232)
                      ++||.+++++.++++
T Consensus       138 p~dl~~l~~~~~a~~  152 (155)
T COG2606         138 PQDLAELLGAAFADI  152 (155)
T ss_pred             HHHHHHhhcchhhhh
Confidence            999999999877665

>TIGR00011 YbaK_EbsC ybaK/ebsC protein

Probab=99.97  E-value=9.8e-31  Score=214.56  Aligned_cols=151  Identities=17%  Similarity=0.304  Sum_probs=137.2

Q ss_pred             HHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCcc
Q 026816           55 RLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARF  134 (232)
Q Consensus        55 rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rl  134 (232)
                      .+.++|+++|| +|++.+|++.-...|.++.|+.+|++ +++++|||++++++             ++|+++++|+++++
T Consensus         2 ~~~~~L~~~~i-~~~~~~~~~~~~~~t~~e~a~~~g~~-~~~~~Ktlv~~~~~-------------~~~~lv~~~gd~~l   66 (152)
T TIGR00011         2 NAIRLLDKAKI-EYEVHEYEVDPDHLDGESAAEKLGVD-PHRVFKTLVAEGDK-------------KGPVVAVIPGDEEL   66 (152)
T ss_pred             HHHHHHHHcCC-CcEEEEecCCCCcccHHHHHHHhCCC-HHHeEEEEEEEcCC-------------CcEEEEEEECCcee
Confidence            47899999999 99999999764335888999999997 99999999999642             36999999999999


Q ss_pred             CHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEe
Q 026816          135 NAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWG  214 (232)
Q Consensus       135 d~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~  214 (232)
                      |++|++++++.        +  +++||+++++.+++||.+|+|+|||+..++|+|+|+++.+.  +.+|+++|+.+..+.
T Consensus        67 d~~kl~~~lg~--------~--~~~~a~~ee~~~~~g~~~G~v~P~g~~~~~~vivD~~l~~~--~~~~~~~g~~~~~~~  134 (152)
T TIGR00011        67 DLKKLAKASGG--------K--KAEMADPKDAEKVTGYIRGGISPIGQKKKFPTYIDESAKQL--ETIYVSGGKRGLQIE  134 (152)
T ss_pred             CHHHHHHHhCC--------C--CcccCCHHHHHHhcCCcccccCCCCcCCCccEEEehHHhcC--CEEEEecCCCCcEEE
Confidence            99999998642        3  38999999999999999999999999999999999999986  789999999999999


Q ss_pred             eCHHHHHhhhCCeEeecC
Q 026816          215 IKTSEFIKFVKPFIVGCS  232 (232)
Q Consensus       215 is~~dl~~l~~~~v~di~  232 (232)
                      |+++||.++++|.|+|||
T Consensus       135 i~~~dl~~~~~~~~~~i~  152 (152)
T TIGR00011       135 LAPDDLIRLLDGTFADIA  152 (152)
T ss_pred             ECHHHHHHHhCCEEEecC
Confidence            999999999999999986

This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.

>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function

Probab=99.97  E-value=1.5e-30  Score=213.04  Aligned_cols=152  Identities=19%  Similarity=0.323  Sum_probs=137.5

Q ss_pred             HHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCc
Q 026816           54 ARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTAR  133 (232)
Q Consensus        54 ~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~r  133 (232)
                      ++|.++|+++|| +|+...||+.   .|.+++++.+|++ +++++||+++++++.           .++||++++|++++
T Consensus         2 ~~v~~~L~~~~i-~y~~~~~~~~---~t~~~~a~~~~~~-~~~~~Ktll~~~~~~-----------~~~~vlvv~~~~~~   65 (153)
T cd04336           2 ERLQELLNTNGA-RFRVLDHPPE---GTSEEVAAIRGTE-LGQGAKALLCKVKDG-----------SRRFVLAVLPADKK   65 (153)
T ss_pred             HHHHHHHHHCCC-CEEEEecCCC---CCHHHHHHHhCCC-cccceEEEEEEecCC-----------CceEEEEEEeCccc
Confidence            689999999999 9999999874   5888999999997 999999999997420           02699999999999


Q ss_pred             cCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceE
Q 026816          134 FNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKW  213 (232)
Q Consensus       134 ld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l  213 (232)
                      +|++|+++.++        .++  +++|+++++.++|||++|+|+|||+..++|+|+|+++.+. .+.||+++|+.+.++
T Consensus        66 v~~~kl~~~~g--------~~~--l~~a~~~~l~~~~g~~~G~v~P~gl~~~v~~~iD~~l~~~-~~~v~~~~G~~~~~l  134 (153)
T cd04336          66 LDLKAVAAAVG--------GKK--ADLASPEEAEELTGCVIGAVPPFSFDPKLKLIADPSLLDR-GDEIAFNAGRLDASV  134 (153)
T ss_pred             cCHHHHHHHhC--------CCc--cccCCHHHHHHHhCCccccCCCCCCCCCceEEEChHHhcc-CCEEEEcCCCCCcEE
Confidence            99999999864        333  8999999999999999999999999999999999999982 389999999999999


Q ss_pred             eeCHHHHHhhhCCeEeecC
Q 026816          214 GIKTSEFIKFVKPFIVGCS  232 (232)
Q Consensus       214 ~is~~dl~~l~~~~v~di~  232 (232)
                      .|+++||.++++|++++||
T Consensus       135 ~i~~~dl~~~~~~~~~~~~  153 (153)
T cd04336         135 VLDTADYLRIARPLVLQFT  153 (153)
T ss_pred             EECHHHHHHHhCCEEeccC
Confidence            9999999999999999997

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function

Probab=99.97  E-value=6.6e-30  Score=208.93  Aligned_cols=126  Identities=21%  Similarity=0.317  Sum_probs=110.2

Q ss_pred             cHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHH-HHHHhhhccCCCCCCcccccc
Q 026816           81 PLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEA-VKNFLYTLNNGKIPKKKFNLR  159 (232)
Q Consensus        81 tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kk-l~~~l~~l~~~~lg~k~~~lr  159 (232)
                      .-.++|+.+|++ ++|++|||+++.++.          ...+|+++|+|+++|+|++| +++.+        |.|+  ++
T Consensus        13 ~~~~~A~~lG~~-~~~i~KTLv~~~~~~----------~~~~~~v~vv~gd~~ldlkk~~~~~~--------g~kk--~~   71 (139)
T cd04939          13 DTAAFCARYGFG-LEDSANCVVVAGKRG----------GEERYAACVVLATTRADVNGVVKRRL--------GARK--AS   71 (139)
T ss_pred             cHHHHHHHhCCC-HHHeEEEEEEEeecC----------CCccEEEEEEECccccCHHHHHHHHh--------CCCC--cc
Confidence            345567799998 999999999986421          11369999999999999875 66775        4343  89


Q ss_pred             cCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEeeCHHHHHhhhCCeEe
Q 026816          160 LAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIV  229 (232)
Q Consensus       160 lA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is~~dl~~l~~~~v~  229 (232)
                      |+++++++++|||.+|||||||+++++|+|+|++++++  +.||++||+++..++|+++||++++++.|+
T Consensus        72 ma~~~ev~~~TGy~~GGvsP~G~~~~~pv~iD~sl~~~--~~v~~saG~~~~~~~l~p~~L~~~~~a~v~  139 (139)
T cd04939          72 FAPMETAVELTGMEYGGITPVGLPAGWPILVDSAVAER--PAVVIGSGVRRSKLLLPGAALAELPGAEVL  139 (139)
T ss_pred             cCCHHHHHHhhCCCCccCCcCCcCCCCCEEEehHHhcC--CEEEECCCCCCcEEEECHHHHHHHhCCEEC
Confidence            99999999999999999999999999999999999987  999999999999999999999999999874

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)

Probab=99.97  E-value=1.6e-29  Score=206.54  Aligned_cols=147  Identities=22%  Similarity=0.383  Sum_probs=135.9

Q ss_pred             HHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCc
Q 026816           54 ARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTAR  133 (232)
Q Consensus        54 ~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~r  133 (232)
                      +++.++|+++++ .|++.+||..  ..|.+++++.+|.+ .++++||++++++              ++++++++|++++
T Consensus         2 ~~~~~~L~~~~i-~~~~~~~~~~--~~t~~e~a~~~~~~-~~~~~K~l~~~~~--------------~~~~~v~~~~~~~   63 (148)
T cd04333           2 ERVRAFLAARGL-DLEVIELPES--TRTAALAAEALGCE-PGQIAKSLVFRVD--------------DEPVLVVTSGDAR   63 (148)
T ss_pred             HHHHHHHHHCCC-CCeEEECCCC--cchHHHHHHHcCCC-hhHEEEEEEEEEC--------------CcEEEEEEeCCcc
Confidence            689999999999 8999999964  45889999999997 8999999999863              3689999999999


Q ss_pred             cCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceE
Q 026816          134 FNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKW  213 (232)
Q Consensus       134 ld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l  213 (232)
                      +|++|+++.++        .   +++||+++++.++|||++|+|+|||+..++|+|+|+++.+.  +.+|++||+.+..+
T Consensus        64 ld~~kl~~~lg--------~---~l~~a~~~~~~~~~g~~~G~v~P~gl~~~v~v~vD~~l~~~--~~i~~~~g~~~~~~  130 (148)
T cd04333          64 VDNKKFKALFG--------E---KLKMADAEEVRELTGFAIGGVCPFGHPEPLPVYLDESLKRF--DEVWAAAGTPNAAF  130 (148)
T ss_pred             cCHHHHHHHhC--------C---CceeCCHHHHHHHHCCCCCcCCCCCCCCCCeEEEehhHhhC--CeEEEcCCCCCcEE
Confidence            99999999863        3   38999999999999999999999999989999999999986  89999999999999


Q ss_pred             eeCHHHHHhhhCCeEeec
Q 026816          214 GIKTSEFIKFVKPFIVGC  231 (232)
Q Consensus       214 ~is~~dl~~l~~~~v~di  231 (232)
                      .|+++||.++++|.++||
T Consensus       131 ~i~~~dl~~~~~~~~~~i  148 (148)
T cd04333         131 RLTPDELERLTGAEWVDV  148 (148)
T ss_pred             EECHHHHHHHhCCeEecC
Confidence            999999999999999986

While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.

>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences

Probab=99.96  E-value=6.4e-29  Score=204.60  Aligned_cols=143  Identities=20%  Similarity=0.308  Sum_probs=130.3

Q ss_pred             HHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCc
Q 026816           54 ARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTAR  133 (232)
Q Consensus        54 ~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~r  133 (232)
                      +++.++|+++|+ .|+...||+   ..|++++|+.+|++ +++++|||++++++             ++++++++|++++
T Consensus         2 ~~~~~~L~~~~i-~~~~~~~~~---~~t~e~~a~~~~~~-~~~~~Ktlv~~~~~-------------~~~vlv~~~gd~~   63 (156)
T cd04335           2 DELLALLDELGI-AYETVEHPP---VFTVEEADEVLGEL-PGAHTKNLFLKDKK-------------GRLYLVTALHDKK   63 (156)
T ss_pred             hHHHHHHHHCCC-ceEEEecCC---cCCHHHHHHhhccC-CCceEEEEEEEcCC-------------CCEEEEEEcCCcc
Confidence            689999999999 999999986   46889999999997 99999999998632             3699999999999


Q ss_pred             cCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCccc----CccEEEchhhhccCCCeEEEccCCC
Q 026816          134 FNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKT----DIPVILDEAITKLSPDFFWLGGGET  209 (232)
Q Consensus       134 ld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~----~ipviiD~~l~~l~~~~v~~ggG~~  209 (232)
                      +|++++++.++.        +  +++||++|++.++|||++|+|+|||+..    ++|+|+|+++...  +.+|++||++
T Consensus        64 vn~~kl~~~lg~--------~--~l~~a~~ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~--~~v~~~~G~~  131 (156)
T cd04335          64 VDLKALSKQLGA--------S--RLSFASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEE--ERVGFHPLTN  131 (156)
T ss_pred             cCHHHHHHHhCC--------C--CcccCCHHHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcC--CeEEEeCCCC
Confidence            999999998743        3  3999999999999999999999999964    7999999999986  8999999999


Q ss_pred             CceEeeCHHHHHhhhCC
Q 026816          210 DLKWGIKTSEFIKFVKP  226 (232)
Q Consensus       210 ~~~l~is~~dl~~l~~~  226 (232)
                      +..+.|+++||.+++++
T Consensus       132 ~~~~~i~~~dl~~~~~~  148 (156)
T cd04335         132 TATVGISTEDLLKFLEA  148 (156)
T ss_pred             ceEEEEcHHHHHHHHHH
Confidence            99999999999999875

The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.

>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins

Probab=99.96  E-value=2.6e-28  Score=200.42  Aligned_cols=150  Identities=17%  Similarity=0.304  Sum_probs=135.9

Q ss_pred             HHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCcc
Q 026816           55 RLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARF  134 (232)
Q Consensus        55 rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rl  134 (232)
                      .+.++|+++|| .|++.+|++.-...+.++.++.+|++ +.+++|+|++++++             ++++++++|+++++
T Consensus         3 ~~~~~L~~~~i-~~~~~~h~~~~~~~t~~e~~~~~~~~-~~~~~K~li~~~d~-------------~~~vlv~~~gd~~l   67 (152)
T cd00002           3 PAIRLLDKAKI-PYELHEYEHDEDASDGLEAAEKLGLD-PEQVFKTLVVEGDK-------------KGLVVAVVPVDEEL   67 (152)
T ss_pred             HHHHHHHHcCC-CeEEEeecCCCCcCCHHHHHHHhCCC-HHHeEEEEEEEcCC-------------CcEEEEEEECCcee
Confidence            47889999999 99999998764445888889999997 89999999999742             46999999999999


Q ss_pred             CHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEe
Q 026816          135 NAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWG  214 (232)
Q Consensus       135 d~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~  214 (232)
                      |+++++++++.        +  ++++|+++++.+++|+++|+|+|||+..++|+++|.++.+.  +.+|+++|+.+..+.
T Consensus        68 d~~kl~~~lg~--------~--~l~~a~~ee~~~~~g~~~G~v~P~~l~~~v~~liD~~l~~~--~~~~~~ag~~~~~l~  135 (152)
T cd00002          68 DLKKLAKALGA--------K--KVEMAPPKDAERLTGYIRGGISPLGQKKRLPTVIDESALDL--DTIYVSAGKRGLQIE  135 (152)
T ss_pred             CHHHHHHHhCC--------C--CcccCCHHHHHHhcCCcccccCccCcCCCccEEEehHHhcC--CEEEEeCCCCCcEEE
Confidence            99999998743        3  38999999999999999999999999888999999999985  799999999999999


Q ss_pred             eCHHHHHhhhCCeEeec
Q 026816          215 IKTSEFIKFVKPFIVGC  231 (232)
Q Consensus       215 is~~dl~~l~~~~v~di  231 (232)
                      |+++||.++++|+|+||
T Consensus       136 i~~~~l~~~~~~~~~~~  152 (152)
T cd00002         136 LAPQDLAKLTGAKFADI  152 (152)
T ss_pred             ECHHHHHHHhCCEEecC
Confidence            99999999999999986

These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.

>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms

Probab=99.94  E-value=1.1e-26  Score=183.86  Aligned_cols=119  Identities=27%  Similarity=0.466  Sum_probs=106.2

Q ss_pred             CccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhccCCCCCCccccc
Q 026816           79 DWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNL  158 (232)
Q Consensus        79 ~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l~~~~lg~k~~~l  158 (232)
                      ..|++++|+.+|++ +++++|||++++.+             ++|+++++++++++|++|+++.++.        +  ++
T Consensus         4 ~~t~~~~a~~~~~~-~~~~~Ktlv~~~~~-------------~~~~lv~~~~d~~ld~~kl~~~~g~--------~--~l   59 (123)
T PF04073_consen    4 TRTIEDAAKALGVP-PEQIVKTLVLKDKK-------------GRPVLVVLPGDHRLDLKKLAKALGA--------R--RL   59 (123)
T ss_dssp             TSSHHHHHHHHTCS-GGGEEEEEEEEETT-------------TEEEEEEEETTSEB-HHHHHHHHT---------S--SE
T ss_pred             CCcHHHHHHHcCCC-HHHEEEEEEEEECC-------------CCEEEEEECCCCEecHHHHhccccc--------c--ch
Confidence            46899999999998 99999999999743             5799999999999999999999853        3  49


Q ss_pred             ccCCHhhHhhhhCCCCCcccCCCc-ccCccEEEchhhhccCCCeEEEccCCCCceEeeCHHHHHhh
Q 026816          159 RLAPEETSMNLTGYEHNAVTCIGM-KTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKF  223 (232)
Q Consensus       159 rlA~~ee~~~lTGy~~GgVsPfG~-~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is~~dl~~l  223 (232)
                      +||++|++.++|||.+|+|||||+ ..++|+|+|+++++.  +.+|+++|+.+..+.++++||.++
T Consensus        60 ~~a~~e~~~~~~g~~~G~v~P~g~~~~~~~vvvD~~l~~~--~~v~~~~g~~~~~l~~~~~dl~~l  123 (123)
T PF04073_consen   60 RLASPEELEELTGYEPGGVSPFGLPPKGVPVVVDESLLEL--DNVYFGAGEPGSHLEISNEDLRKL  123 (123)
T ss_dssp             EE-HHHHHHHHHSSTTTS--SSGGGSTTEEEEEEGGGGGS--SEEEEECSSTTEEEEEEHHHHHHH
T ss_pred             hhccHHHhhhccCCCcceecccccccCccEEEEEHHHcCC--CcEEEeCCCCCeEEEEChHHhccC
Confidence            999999999999999999999999 899999999999997  799999999999999999999875

The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....

>cd04332 YbaK_like YbaK-like

Probab=99.91  E-value=9.5e-24  Score=167.89  Aligned_cols=133  Identities=23%  Similarity=0.391  Sum_probs=117.7

Q ss_pred             eeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhcc
Q 026816           68 FQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLN  147 (232)
Q Consensus        68 ~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l~  147 (232)
                      |....|++.  ..|.++++..+|.+ .++++|++++++++             ++++++++|+++++|++++++.++   
T Consensus         2 ~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~K~l~l~~~~-------------~~~v~v~~~~d~~~d~~~l~~~~g---   62 (136)
T cd04332           2 YLEYEHTPG--AKTIEEAAEALGVP-PGQIAKTLVLKDDK-------------GGLVLVVVPGDHELDLKKLAKALG---   62 (136)
T ss_pred             cEEEecCCC--CCCHHHHHHHcCCC-HHHeEEEEEEEcCC-------------CcEEEEEEecccccCHHHHHHHhC---
Confidence            445555554  26889999999997 89999999999752             379999999999999999999864   


Q ss_pred             CCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEeeCHHHHHhhhC-C
Q 026816          148 NGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVK-P  226 (232)
Q Consensus       148 ~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is~~dl~~l~~-~  226 (232)
                           .+  +++||+++++.+++||.+|+|+|||+..++|+|+|+++.+.  +.+|+++|+.+..+.|+.+||.+.++ |
T Consensus        63 -----~~--~l~~a~~~~~~~~~g~~~G~v~P~~~~~~v~~~iD~~l~~~--~~~~~~~g~~~~~~~i~~~~l~~~~~~~  133 (136)
T cd04332          63 -----AK--KLRLASEEELEELTGCEPGGVGPFGLKKGVPVVVDESLLEL--EDVYVGAGERGADLHLSPADLLRLLGEA  133 (136)
T ss_pred             -----CC--CeeeCCHHHHHHHhCCCcCccCccccCCCCcEEEehHHhhC--CeEEEcCCCcCcEEEECHHHHHHHhccc
Confidence                 34  39999999999999999999999999999999999999986  89999999999999999999999998 6


Q ss_pred             eE
Q 026816          227 FI  228 (232)
Q Consensus       227 ~v  228 (232)
                      .+
T Consensus       134 ~~  135 (136)
T cd04332         134 EV  135 (136)
T ss_pred             cc
Confidence            54

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).

>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial

Probab=99.86  E-value=2.2e-21  Score=160.48  Aligned_cols=133  Identities=20%  Similarity=0.335  Sum_probs=110.4

Q ss_pred             ceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhc
Q 026816           67 DFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTL  146 (232)
Q Consensus        67 ~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l  146 (232)
                      .|+.+.||..   .|.+++|..+|++ .++++|||+++.++            +++|+|+++|+++++|++++++.++. 
T Consensus        26 ~~~~v~hp~~---~t~~~~a~~~~~~-~~~~~K~l~~~~~~------------~~~~~l~~~~~d~~vd~~kl~~~~g~-   88 (160)
T cd04334          26 ELEKVATPGQ---KTIEELAEFLGVP-PSQTVKTLLVKADG------------EEELVAVLLRGDHELNEVKLENLLGA-   88 (160)
T ss_pred             CCeEEcCcCC---CCHHHHHHHhCcC-HHHeEEEEEEEECC------------CCCEEEEEecCCchhCHHHHHHhcCC-
Confidence            7888999885   5888999999997 99999999998642            13699999999999999999998643 


Q ss_pred             cCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEeeCHHHHHhhhC-
Q 026816          147 NNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVK-  225 (232)
Q Consensus       147 ~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~is~~dl~~l~~-  225 (232)
                             +  +++||+++++.++|||++|+|+|||+. ++|+|+|+++.+.  +.+++|+|..+.-+ +... +-+.+. 
T Consensus        89 -------~--~l~~a~~eel~~~~g~~~G~v~P~gl~-~v~~~iD~~l~~~--~~~~~ga~~~~~~~-~~~~-~~~d~~~  154 (160)
T cd04334          89 -------A--PLELASEEEIEAATGAPPGFIGPVGLK-KIPIIADRSVADL--KNFVCGANEDDYHY-VNVN-WGRDFPL  154 (160)
T ss_pred             -------C--cceeCCHHHHHHhhCCCCCEECCcCCC-CCeEEEehHHhcC--CCEEEcCCCCCcEE-ECCc-cCccCCC
Confidence                   3  399999999999999999999999998 9999999999986  67889999988655 4443 554443 


Q ss_pred             CeEee
Q 026816          226 PFIVG  230 (232)
Q Consensus       226 ~~v~d  230 (232)
                      +.+.|
T Consensus       155 ~~~~d  159 (160)
T cd04334         155 PEVAD  159 (160)
T ss_pred             Cceee
Confidence            33444

It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.

>COG3760 Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=7.7e-18  Score=137.98  Aligned_cols=153  Identities=21%  Similarity=0.344  Sum_probs=125.5

Q ss_pred             ChHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEe
Q 026816           50 RDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQ  129 (232)
Q Consensus        50 ~~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~  129 (232)
                      ..+.+.+.++|+++|| ++..++||+.|   |+++. .+++..-++.-.|+|+++|+|             ++|||+.+-
T Consensus         2 ~kt~~el~~lL~eLgI-~~~tveHppv~---tveEs-~~~~~eipgghtKnLfLkdkK-------------~q~~lv~~~   63 (164)
T COG3760           2 MKTEAELFALLDELGI-DHTTVEHPPVF---TVEES-QALRDEIPGGHTKNLFLKDKK-------------DQFFLVTVD   63 (164)
T ss_pred             CCCHHHHHHHHHHhCC-CcccccCCCce---ehHHH-HHHHhhcCCCccceeEeecCC-------------CCEEEEEec
Confidence            3567889999999999 99999999987   55563 444445578899999999986             589999999


Q ss_pred             cCCccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcc----cCccEEEchhhhccCCCeEEEc
Q 026816          130 YTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMK----TDIPVILDEAITKLSPDFFWLG  205 (232)
Q Consensus       130 ~~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~----~~ipviiD~~l~~l~~~~v~~g  205 (232)
                      ..+.+|++++.+.+|+        +|  ++|.++|.+++..|..+|+||+||..    +++.+|+|+.+++.  +.|=+=
T Consensus        64 e~~~vDLk~ih~~IG~--------~R--lsFg~~E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~--~~infH  131 (164)
T COG3760          64 EDAVVDLKSIHETIGA--------AR--LSFGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDD--DLINFH  131 (164)
T ss_pred             ccceecHHHHHHHhce--------ee--eecCCHHHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhc--cccccc
Confidence            9999999999998755        53  89999999999999999999999985    45999999999973  444333


Q ss_pred             cCCCCceEeeCHHHHHhhhC-----CeEeecC
Q 026816          206 GGETDLKWGIKTSEFIKFVK-----PFIVGCS  232 (232)
Q Consensus       206 gG~~~~~l~is~~dl~~l~~-----~~v~di~  232 (232)
                      .=.-+....++.+|+++++.     |+|+|++
T Consensus       132 Pl~N~aTt~ia~~dl~~fL~atGhep~il~~~  163 (164)
T COG3760         132 PLSNTATTSIASADLIRFLEATGHEPRILDVS  163 (164)
T ss_pred             cCCCccceeehHHHHHHHHHHcCCCceeeecc
Confidence            33345678889999998874     7777764

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=99.58  E-value=7.5e-15  Score=143.49  Aligned_cols=115  Identities=21%  Similarity=0.343  Sum_probs=99.5

Q ss_pred             eEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhccC
Q 026816           69 QFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNN  148 (232)
Q Consensus        69 ~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l~~  148 (232)
                      +.+.||..   .|.++.|..+|++ +++++||||+++.              ++|+++++|+++++|++|+++.++.   
T Consensus       251 ~~v~~p~~---~t~~e~a~~lg~~-~~~~~KtLi~~~~--------------~~~~lvvvp~d~~vn~~kl~~~lg~---  309 (565)
T PRK09194        251 EKVDTPNA---KTIEELAEFLNVP-AEKTVKTLLVKAD--------------GELVAVLVRGDHELNEVKLENLLGA---  309 (565)
T ss_pred             eeecCCCC---CcHHHHHHHhCCC-HHHeeEEEEEEeC--------------CeEEEEEeecchhhhHHHHHhhcCC---
Confidence            45566664   5788899999997 9999999999853              3799999999999999999998643   


Q ss_pred             CCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceE
Q 026816          149 GKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKW  213 (232)
Q Consensus       149 ~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l  213 (232)
                           +  ++++|+++++.++|||+.|+|+|||+..++|+|+|+++...  +.++.|||..+.-+
T Consensus       310 -----~--~l~~a~~eel~~~~g~~~G~v~P~Gl~~~v~viiD~sl~~~--~~~~~gan~~g~h~  365 (565)
T PRK09194        310 -----A--PLELATEEEIRAALGAVPGFLGPVGLPKDVPIIADRSVADM--SNFVVGANEDDYHY  365 (565)
T ss_pred             -----c--ccccCCHHHHHHhhCCCCCccCcccCCCCceEEEecccccc--ccccccCCCCCcee
Confidence                 3  38999999999999999999999999999999999999985  67777888887655

>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II

Probab=98.53  E-value=4.3e-07  Score=89.51  Aligned_cols=110  Identities=15%  Similarity=0.258  Sum_probs=91.5

Q ss_pred             CccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhccCCCCCCccccc
Q 026816           79 DWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNL  158 (232)
Q Consensus        79 ~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l~~~~lg~k~~~l  158 (232)
                      ..|.++.+..++++ +.+.+||+++...+           .+.+++++++++++.||..|+++.++.       ..  .+
T Consensus       259 ~~ti~~~~~~~~~~-~~~~~k~~~~~~~~-----------~~~~~v~v~~rgd~~vn~~k~~~~~g~-------~~--~~  317 (568)
T TIGR00409       259 TKTIAELVECFNLP-AEKVVKTLLVKAVD-----------KSEPLVALLVRGDHELNEVKAPNLLLV-------AQ--VL  317 (568)
T ss_pred             CCcHHHHHHHhCCC-HhHeeeEEEEEecC-----------CccceEEEEecCcchhhHHHHHHHhcc-------Cc--cc
Confidence            46889999999997 99999999997421           123589999999999999999998632       01  27


Q ss_pred             ccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCc
Q 026816          159 RLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDL  211 (232)
Q Consensus       159 rlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~  211 (232)
                      ++|+++++.+.+|...|.+.|+|+..++++++|.++...  ..+..||...+.
T Consensus       318 ~~a~~~~~~~~~g~~~g~~gpv~~~~~~~i~~D~~~~~~--~~~~~gan~~~~  368 (568)
T TIGR00409       318 ELATEEEIFQKIASGPGSLGPVNINGGIPVLIDQTVALM--SDFAAGANADDK  368 (568)
T ss_pred             ccCCHHHHHHhhCCCCCccCccccccCceEEechhhhcc--cccccccCCCCc
Confidence            899999999999999999999999888999999999875  556667777654

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
3op6_A	152	Uncharacterized protein; structural genomics, join	2e-09
2dxa_A	166	Protein YBAK; trans-editing domain, prolyl-tRNA sy	2e-05
1dbu_A	158	HI1434, cysteinyl-tRNA(Pro) deacylase; structural	3e-05

>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp} Length = 152

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 40/180 (22%)

Query: 55  RLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIH----HLCKSIVLVNTQAQS 110
           +L   L S+ +    +  +          +      AA  H     L K++++       
Sbjct: 6   KLKQFLDSHKIK---YLSIAHSP------AYTAQEIAASAHVSGKQLAKTVII------- 49

Query: 111 SVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLA-PEETSMNL 169
                  + + +  +VV+  +       +K  +             +L LA   E     
Sbjct: 50  -------KMDGRLAMVVLPASDHITFMKLKEAI----GTS------DLELATESEFEGKF 92

Query: 170 TGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIV 229
              +  A+   G    +PV++   ++    D      G       +   +F K VKP +V
Sbjct: 93  AECDVGAMPPFGNLYGLPVLVSTKLSAQ--DNILFNAGSHSELMQLSFGDFEKLVKPTLV 150

>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli} Length = 166

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 34/174 (19%)

Query: 58  NILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAA-----CIHHLCKSIVLVNTQAQSSV 112
            +L  N +  FQ        Y+                      + K++++         
Sbjct: 13  KLLEKNKI-SFQIHT-----YEHDPAETNFGDEVVKKLGLNPDQVYKTLLV--------- 57

Query: 113 VDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGY 172
               + +     V V     + +   +K     L   K+        +A    +   TGY
Sbjct: 58  --AVNGDMKHLAVAVTPVAGQLD---LKKVAKALGAKKV-------EMADPMVAQRSTGY 105

Query: 173 EHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKP 226
               ++ +G K  +P I+D    +      ++ GG+  L   +   +  K +  
Sbjct: 106 LVGGISPLGQKKRLPTIIDAPAQEF--ATIYVSGGKRGLDIELAAGDLAKILDA 157

>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A Length = 158

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 23/177 (12%), Positives = 57/177 (32%), Gaps = 34/177 (19%)

Query: 58  NILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAA-----CIHHLCKSIVLVNTQAQSSV 112
           ++L+   +  F         YD    ++     AA       +   K++++         
Sbjct: 6   DLLKKQKI-PFILHT-----YDHDPNNQHFGDEAAEKLGIDPNRSFKTLLV--------- 50

Query: 113 VDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGY 172
               + +  K    V+      N +            K    K  + +A ++ +   TGY
Sbjct: 51  --AENGDQKKLACFVLATANMLNLKKAA---------KSIGVK-KVEMADKDAAQKSTGY 98

Query: 173 EHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIV 229
               ++ +G K  +  +++    +   +  ++ GG+  L   I   +  K +     
Sbjct: 99  LVGGISPLGQKKRVKTVINSTALEF--ETIYVSGGKRGLSVEIAPQDLAKVLGAEFT 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3op6_A	152	Uncharacterized protein; structural genomics, join	100.0
2z0x_A	158	Putative uncharacterized protein TTHA1699; protein	100.0
1wdv_A	152	Hypothetical protein APE2540; structural genomics,	100.0
1dbu_A	158	HI1434, cysteinyl-tRNA(Pro) deacylase; structural	99.97
2dxa_A	166	Protein YBAK; trans-editing domain, prolyl-tRNA sy	99.97
1vki_A	181	Hypothetical protein ATU3699; structural genomics,	99.97
1vjf_A	180	DNA-binding protein, putative; structural genomics	99.97
3mem_A	457	Putative signal transduction protein; structural g	99.93
2j3l_A	572	Prolyl-tRNA synthetase; class II aminoacyl- T synt	99.18

>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}

Probab=100.00  E-value=2.3e-34  Score=235.09  Aligned_cols=150  Identities=17%  Similarity=0.226  Sum_probs=134.5

Q ss_pred             hHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEec
Q 026816           51 DTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQY  130 (232)
Q Consensus        51 ~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~  130 (232)
                      |+.+++.++|+++|| +|+...||+.   .|.+++|+.+|++ +++++|||+++++              ++||++|+|+
T Consensus         2 M~~~~v~~~L~~~~i-~~~~~~~~~~---~t~~~~a~~lg~~-~~~~~Ktlv~~~~--------------~~~~lvvv~g   62 (152)
T 3op6_A            2 MPVKKLKQFLDSHKI-KYLSIAHSPA---YTAQEIAASAHVS-GKQLAKTVIIKMD--------------GRLAMVVLPA   62 (152)
T ss_dssp             CHHHHHHHHHHHTTC-CEEEEEECTT---CCHHHHC----CC-SSCCEEEEEEEET--------------TEEEEEEEET
T ss_pred             CcHHHHHHHHHHcCC-ceEEEEcCCC---CCHHHHHHHcCCC-hhheEEEEEEEEC--------------CeEEEEEECC
Confidence            567899999999999 8999999864   5899999999998 9999999999963              4799999999


Q ss_pred             CCccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhh-hCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCC
Q 026816          131 TARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNL-TGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGET  209 (232)
Q Consensus       131 ~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~l-TGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~  209 (232)
                      ++++|++|+++.++.        |  +++||+++++.+. |||++|+|||||+++++|+|+|+++.++  +.||++||++
T Consensus        63 d~~ld~~kl~~~lg~--------~--~~~~a~~e~l~~~~tG~~~G~v~P~g~~~~~~v~~D~~l~~~--~~i~~~ag~~  130 (152)
T 3op6_A           63 SDHITFMKLKEAIGT--------S--DLELATESEFEGKFAECDVGAMPPFGNLYGLPVLVSTKLSAQ--DNILFNAGSH  130 (152)
T ss_dssp             TCCCCHHHHHHHHSC--------S--CEEECCGGGTGGGCTTSCTTCCCSCGGGGTCCEEEEHHHHTS--SEEEEECSSS
T ss_pred             CCeECHHHHHHHhCC--------C--ceeeCCHHHHHHHhcCCCcCCCCCCCCCcCCeEEEehhhccC--CeEEEeCCCC
Confidence            999999999999753        4  3999999999877 8999999999999999999999999986  9999999999


Q ss_pred             CceEeeCHHHHHhhhCCeEeec
Q 026816          210 DLKWGIKTSEFIKFVKPFIVGC  231 (232)
Q Consensus       210 ~~~l~is~~dl~~l~~~~v~di  231 (232)
                      +..+.|+++||+++++|.++|+
T Consensus       131 ~~~i~l~~~dl~~~~~~~~~d~  152 (152)
T 3op6_A          131 SELMQLSFGDFEKLVKPTLVTL  152 (152)
T ss_dssp             SEEEEEEHHHHHHHHCCEEECC
T ss_pred             CcEEEECHHHHHHHhcCeecCC
Confidence            9999999999999999999986

>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A

Probab=100.00  E-value=2.3e-33  Score=229.58  Aligned_cols=153  Identities=20%  Similarity=0.358  Sum_probs=140.8

Q ss_pred             CChHHHHHHHHHHHCCCCce-eEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEE
Q 026816           49 IRDTEARLSNILRSNGVNDF-QFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVV  127 (232)
Q Consensus        49 ~~~~~~rv~~~L~~~gi~~~-~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvV  127 (232)
                      +++..+++.++|+++|| +| +.+.+|++  ..|.+++|+.+|++ +++++|||+++++              ++||++|
T Consensus         3 ~~m~~~~~~~~L~~~~i-~~~~~~~~p~~--~~t~~e~a~~lg~~-~~~~~Ktlv~~~~--------------~~~~lvv   64 (158)
T 2z0x_A            3 LSPSARRVQGALETRGF-GHLKVVELPAS--TRTAKEAAQAVGAE-VGQIVKSLVFVGE--------------KGAYLFL   64 (158)
T ss_dssp             CCHHHHHHHHHHHHTTC-TTSCEEECSSC--CSSHHHHHHHHTCC-GGGEEEEEEEEES--------------SSEEEEE
T ss_pred             cchhHHHHHHHHHHcCC-CCCEEEEcCCC--CCCHHHHHHHcCCC-HHHEEEEEEEEeC--------------CcEEEEE
Confidence            35777999999999999 88 99999863  45899999999997 9999999999962              4699999


Q ss_pred             EecCCccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccC
Q 026816          128 VQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGG  207 (232)
Q Consensus       128 v~~~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG  207 (232)
                      +|+++++|++|+++.++.        |   ++||+++++.++|||++|+|+|||+++++|+|+|+++.++  +.||+|||
T Consensus        65 v~gd~~ld~~kl~~~lg~--------~---l~~a~~e~~~~~tG~~~G~v~P~gl~~~v~v~iD~~l~~~--~~i~~~ag  131 (158)
T 2z0x_A           65 VSGKNRLDLGKATRLVGG--------P---LRQATPEEVRELTGFAIGGVPPVGHNTPLPAYLDEDLLGY--PEVWAAGG  131 (158)
T ss_dssp             EETTCCBCHHHHHHHHTS--------C---EEECCHHHHHHHHSSCTTSCCSSCCSSCCCEEEEGGGGGS--SCEEEECS
T ss_pred             EECchhhCHHHHHHHhCC--------C---cEECCHHHHHHHhCCCCccCCcCCCCCCCcEEEEhHHhcC--CcEEEECC
Confidence            999999999999998743        2   8999999999999999999999999999999999999986  89999999


Q ss_pred             CCCceEeeCHHHHHhhhCCeEeecC
Q 026816          208 ETDLKWGIKTSEFIKFVKPFIVGCS  232 (232)
Q Consensus       208 ~~~~~l~is~~dl~~l~~~~v~di~  232 (232)
                      +.+..+.++++||++++++.++||+
T Consensus       132 ~~~~~i~l~~~dl~~~~~~~~~di~  156 (158)
T 2z0x_A          132 TPRALFRATPKELLALTGAQVADLK  156 (158)
T ss_dssp             STTEEEEECHHHHHHHHCCEEECCB
T ss_pred             CCCEEEEECHHHHHHHhCCEEEEee
Confidence            9999999999999999999999985

>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1

Probab=100.00  E-value=1e-32  Score=223.65  Aligned_cols=150  Identities=17%  Similarity=0.349  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCC
Q 026816           53 EARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTA  132 (232)
Q Consensus        53 ~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~  132 (232)
                      .+++.++|+++|| +|+...+|..  ..|.+++|+.+|++ +++++|||++++.+             ++||++|+|+++
T Consensus         2 ~~~~~~~L~~~~i-~~~~~~~p~~--~~t~~~~a~~lg~~-~~~~~Ktlv~~~~~-------------~~~~l~vv~gd~   64 (152)
T 1wdv_A            2 LEKVEEWIKARGL-TWRLLIMQKP--TRTVAEAAALLGVS-ESEIVKTLIVLDNA-------------GGVYAVVIPGDK   64 (152)
T ss_dssp             -CHHHHHHHHHTC-CCEEEECSSC--CSSHHHHHHHHTSC-GGGBEEEEEEEETT-------------SCEEEEEEETTC
T ss_pred             HHHHHHHHHHCCC-CcEEEEcCCC--CCCHHHHHHHcCCC-HHHeEEEEEEEeCC-------------CcEEEEEEECch
Confidence            4689999999999 8999999875  26899999999997 99999999999632             479999999999


Q ss_pred             ccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCce
Q 026816          133 RFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLK  212 (232)
Q Consensus       133 rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~  212 (232)
                      ++|++|+++.+        | +  +++||+++++.++|||++|+|+|||+++++|+|+|+++.++  +.||+++|+.+..
T Consensus        65 ~ld~~kl~~~~--------g-~--~l~~a~~~e~~~~tG~~~G~v~P~g~~~~v~v~~D~~l~~~--~~v~~~~g~~~~~  131 (152)
T 1wdv_A           65 RLNINSMKELA--------G-K--PVRLARANEVVELTGYPVGGVPPVALPPNIVLVVDRILLSR--KKVYGGGGRENAL  131 (152)
T ss_dssp             CBCHHHHHHHH--------T-S--CEEECCHHHHHHHHSSCGGGCCSSSCCTTCEEEEEGGGTTC--SCEEEECSSTTEE
T ss_pred             hhCHHHHHHHH--------C-C--CceeCCHHHHHHHhCCCCCCCCcCCCCCCCcEEEehHHhcC--CeEEEcCCCCCeE
Confidence            99999999986        4 2  39999999999999999999999999999999999999987  6799999999999


Q ss_pred             EeeCHHHHHhhhCCeEeecC
Q 026816          213 WGIKTSEFIKFVKPFIVGCS  232 (232)
Q Consensus       213 l~is~~dl~~l~~~~v~di~  232 (232)
                      +.++++||.+++++.++||+
T Consensus       132 ~~v~~~dl~~~~~~~~~di~  151 (152)
T 1wdv_A          132 LEFSPRELVEATGAVVADVS  151 (152)
T ss_dssp             EEECHHHHHHHHTCEEECCB
T ss_pred             EEECHHHHHHHhCCEEEeee
Confidence            99999999999999999985

>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A

Probab=99.97  E-value=4.8e-31  Score=215.61  Aligned_cols=153  Identities=13%  Similarity=0.246  Sum_probs=132.8

Q ss_pred             HHHHHHHHCCCCceeEEEcCCCCC-CccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCc
Q 026816           55 RLSNILRSNGVNDFQFKKVPSDYY-DWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTAR  133 (232)
Q Consensus        55 rv~~~L~~~gi~~~~~~~~p~~y~-~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~r  133 (232)
                      ++.++|+++|| +|++..++++-. +.+.+++|+.+|++ +++++|||+++.+.           .+++||++|+|++++
T Consensus         3 ~~~~~L~~~~i-~~~~~~~~~~~~~~~t~~e~a~~l~~~-~~~~~Ktl~~~~~~-----------~~~~~~lvv~~gd~~   69 (158)
T 1dbu_A            3 PAIDLLKKQKI-PFILHTYDHDPNNQHFGDEAAEKLGID-PNRSFKTLLVAENG-----------DQKKLACFVLATANM   69 (158)
T ss_dssp             HHHHHHHHHTC-CCEEEECCCCCC-----CHHHHHHTCC-GGGEEEEEEEEETT-----------CTTSEEEEEEETTSC
T ss_pred             hHHHHHHHCCC-CeEEEEEccCCcccchHHHHHHHcCCC-HhHeEEEEEEEecC-----------CCCcEEEEEEECCce
Confidence            68899999999 988876555421 13677889999998 99999999998421           124699999999999


Q ss_pred             cCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceE
Q 026816          134 FNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKW  213 (232)
Q Consensus       134 ld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l  213 (232)
                      +|++|+++.++.        |  +++||+++++.++|||++|+|+|||+++++|+|+|+++.++  +.||+|||+.+..+
T Consensus        70 ld~~kl~~~~g~--------~--~l~~a~~e~~~~~tG~~~G~v~P~g~~~~v~v~iD~~l~~~--~~i~~~ag~~~~~~  137 (158)
T 1dbu_A           70 LNLKKAAKSIGV--------K--KVEMADKDAAQKSTGYLVGGISPLGQKKRVKTVINSTALEF--ETIYVSGGKRGLSV  137 (158)
T ss_dssp             BCHHHHHHHHTC--------S--CEEECCHHHHHHHHSSCTTSCCSSSCSSCCCEEEEGGGGGS--SCEEEECSSTTEEE
T ss_pred             eCHHHHHHHhCC--------C--CeeeCCHHHHHHHhCCCCccCCCCCCCCCCEEEEEhHHhcC--CeEEEeCCCCCcEE
Confidence            999999998743        4  39999999999999999999999999999999999999986  89999999999999


Q ss_pred             eeCHHHHHhhhCCeEeecC
Q 026816          214 GIKTSEFIKFVKPFIVGCS  232 (232)
Q Consensus       214 ~is~~dl~~l~~~~v~di~  232 (232)
                      .++++||.+++++.++||+
T Consensus       138 ~v~~~dl~~~~~~~~~di~  156 (158)
T 1dbu_A          138 EIAPQDLAKVLGAEFTDIV  156 (158)
T ss_dssp             EECHHHHHHHHTCEEECCB
T ss_pred             EECHHHHHHHhCCEEEeee
Confidence            9999999999999999985

>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}

Probab=99.97  E-value=1.4e-30  Score=215.15  Aligned_cols=156  Identities=16%  Similarity=0.249  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHCCCCceeEEEcCCCCC-CccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEec
Q 026816           52 TEARLSNILRSNGVNDFQFKKVPSDYY-DWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQY  130 (232)
Q Consensus        52 ~~~rv~~~L~~~gi~~~~~~~~p~~y~-~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~  130 (232)
                      ...++.++|+++|| +|++..++++.. +.+.+++|+.+|++ +++++|||++++++.           +.+||++|+|+
T Consensus         7 ~~t~~~~~L~~~~i-~y~~~~~~h~~~~~~~~~e~a~~l~~~-~~~~~Ktlv~~~~~~-----------~~~~~lvvv~g   73 (166)
T 2dxa_A            7 GMTPAVKLLEKNKI-SFQIHTYEHDPAETNFGDEVVKKLGLN-PDQVYKTLLVAVNGD-----------MKHLAVAVTPV   73 (166)
T ss_dssp             -CCHHHHHHHHTTC-CCEEEECCCCTTSCCSSCHHHHHHTCC-TTTEEEEEEEEETTE-----------EEEEEEEEEET
T ss_pred             chhHHHHHHHHCCC-CcEEEEEecCCcccchHHHHHHHcCCC-HHHeeEEEEEEeCCC-----------CceEEEEEEeC
Confidence            44689999999999 899866444321 13455789999998 999999999997420           12499999999


Q ss_pred             CCccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCC
Q 026816          131 TARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETD  210 (232)
Q Consensus       131 ~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~  210 (232)
                      ++++|++|+++.++.        +  +++||+++++.++|||++|+|+|||+++++|+|+|+++.++  +.||++||+.+
T Consensus        74 d~~ld~~kl~~~lg~--------~--~l~~a~~e~~~~~tG~~~G~v~P~g~~~~v~v~iD~~l~~~--~~i~~~ag~~~  141 (166)
T 2dxa_A           74 AGQLDLKKVAKALGA--------K--KVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEF--ATIYVSGGKRG  141 (166)
T ss_dssp             TSEECHHHHHHHHTC--------S--CEEECCHHHHHHHHSSCTTCCCSSSCSSCCCEEEEGGGGGS--SCEEEEEEETT
T ss_pred             CceeCHHHHHHHhCC--------C--ceEECCHHHHHHccCCCCccCCCcCCCCCCeEEEEhHHhcC--CeEEEcCCCCC
Confidence            999999999998743        3  39999999999999999999999999999999999999986  89999999999


Q ss_pred             ceEeeCHHHHHhhhCCeEeecC
Q 026816          211 LKWGIKTSEFIKFVKPFIVGCS  232 (232)
Q Consensus       211 ~~l~is~~dl~~l~~~~v~di~  232 (232)
                      ..+.++++||.+++++.++||+
T Consensus       142 ~~i~~~~~dl~~~~~~~~~di~  163 (166)
T 2dxa_A          142 LDIELAAGDLAKILDAKFADIA  163 (166)
T ss_dssp             EEEEECHHHHHHHHTCEEECCE
T ss_pred             cEEEECHHHHHHHhCCEEEEEe
Confidence            9999999999999999999984

>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1

Probab=99.97  E-value=7.7e-31  Score=220.50  Aligned_cols=155  Identities=16%  Similarity=0.272  Sum_probs=138.3

Q ss_pred             CChHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEE
Q 026816           49 IRDTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVV  128 (232)
Q Consensus        49 ~~~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv  128 (232)
                      ..+..+++.++|+++|| .|+.+.+|..   .|.+++|+.+|++ +++++|||++++++             ++||++|+
T Consensus        17 ~~~~~~~~~~~L~~~~i-~~~~~~~p~~---~T~ee~a~~l~~~-~~~~~KtLvl~~~~-------------~~~vlvvv   78 (181)
T 1vki_A           17 SRKTATELFEFLDGLGI-SHTTKQHEPV---FTVAESQSLRDLI-PGGHTKNLFVKDKK-------------DQYFVLTV   78 (181)
T ss_dssp             CCCCHHHHHHHHHHHTC-CCEEEECCCC---CSHHHHHHHHTTS-CSEEEEEEEEECTT-------------CCEEEEEE
T ss_pred             cchHHHHHHHHHHHCCC-CeEEEECCCC---CCHHHHHHHcCCC-ccceeEEEEEEEcC-------------CeEEEEEE
Confidence            44678899999999999 8999999874   5899999999997 99999999999642             46999999


Q ss_pred             ecCCccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCc----ccCccEEEchhhhccCCCeEEE
Q 026816          129 QYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGM----KTDIPVILDEAITKLSPDFFWL  204 (232)
Q Consensus       129 ~~~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~----~~~ipviiD~~l~~l~~~~v~~  204 (232)
                      |+++++|++|+++.++.       .|  +++||+++++.++|||++|+|+|||+    +.++|+|+|+++.++  +.||+
T Consensus        79 ~gd~~ld~kkl~~~lg~-------~k--~l~~a~~eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~--~~i~~  147 (181)
T 1vki_A           79 EENAVVDLKSVHKTIGA-------AS--RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLEN--ELVNG  147 (181)
T ss_dssp             ETTCCBCTTTHHHHHTC-------SS--SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGS--SEEEE
T ss_pred             eCCCccCHHHHHHHhCC-------CC--CeEECCHHHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcC--CeEEE
Confidence            99999999999998741       23  38999999999999999999999999    568999999999987  89999


Q ss_pred             ccCCCCceEeeCHHHHHhhhC-----CeEeecC
Q 026816          205 GGGETDLKWGIKTSEFIKFVK-----PFIVGCS  232 (232)
Q Consensus       205 ggG~~~~~l~is~~dl~~l~~-----~~v~di~  232 (232)
                      |||.++..+.|+++||+++++     +.|+|++
T Consensus       148 ~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v~~~  180 (181)
T 1vki_A          148 HPLSNDQTTTIASKDLIRFLEATGHAPLVLKVS  180 (181)
T ss_dssp             CSSSTTEEEEEEHHHHHHHHHHTTCCCEEECCB
T ss_pred             eCCCCCeEEEECHHHHHHHHHhcCCCeEEEeCC
Confidence            999999999999999999986     4777753

>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1

Probab=99.97  E-value=1.2e-30  Score=219.22  Aligned_cols=152  Identities=18%  Similarity=0.293  Sum_probs=136.6

Q ss_pred             hHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEec
Q 026816           51 DTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQY  130 (232)
Q Consensus        51 ~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~  130 (232)
                      ++.+++.++|+++|| .|+...+|+.   .|.+++|+.+|++ +++++|||++++++             ++||++|+|+
T Consensus        14 ~~~~~v~~~L~~~~i-~~~~~~~p~~---~T~ee~a~~l~~~-~~~~~KtLvl~~~~-------------~~~~lvvv~g   75 (180)
T 1vjf_A           14 KTRADLFAFFDAHGV-DHKTLDHPPV---FRVEEGLEIKAAM-PGGHTKNLFLKDAK-------------GQLWLISALG   75 (180)
T ss_dssp             CCHHHHHHHHHHHTC-CCEEEECCCC---CSHHHHHHHHHHS-CSEEEEEEEEEETT-------------SCEEEEEEET
T ss_pred             chHHHHHHHHHHCCC-CEEEEecCCC---CCHHHHHHHcCCC-ccceeeEEEEEeCC-------------CCEEEEEEeC
Confidence            567899999999999 8999999875   5889999999997 99999999999732             4699999999


Q ss_pred             CCccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCccc----CccEEEchhhhccCCCeEEEcc
Q 026816          131 TARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKT----DIPVILDEAITKLSPDFFWLGG  206 (232)
Q Consensus       131 ~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~----~ipviiD~~l~~l~~~~v~~gg  206 (232)
                      ++++|++|+++.++.        |  +++||++++++++|||++|+|+|||+.+    ++|+|+|+++.++  +.||++|
T Consensus        76 d~~ld~kkl~~~lg~--------k--~l~~a~~eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~--~~i~~~a  143 (180)
T 1vjf_A           76 ETTIDLKKLHHVIGS--------G--RLSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADS--DPVNFHP  143 (180)
T ss_dssp             TCCCCTTTHHHHHTC--------S--CEEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTC--SSEEECS
T ss_pred             CCccCHHHHHHHhCC--------C--CeeeCCHHHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcC--CcEEEeC
Confidence            999999999998743        3  3999999999999999999999999965    4999999999986  8999999


Q ss_pred             CCCCceEeeCHHHHHhhhCC-----eEeecC
Q 026816          207 GETDLKWGIKTSEFIKFVKP-----FIVGCS  232 (232)
Q Consensus       207 G~~~~~l~is~~dl~~l~~~-----~v~di~  232 (232)
                      |.++..+.|+++||++++++     .|+|++
T Consensus       144 g~~~~~i~l~~~dL~~~~~~~~~~~~~v~~~  174 (180)
T 1vjf_A          144 LKNDATTAVSQAGLRRFLAALGVEPMIVDFA  174 (180)
T ss_dssp             SSTTEEEEECHHHHHHHHHHTTCCCEEEETT
T ss_pred             CCCCeEEEECHHHHHHHHHhcCCCeEEEECc
Confidence            99999999999999999974     677764

>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}

Probab=99.93  E-value=9.9e-26  Score=212.93  Aligned_cols=133  Identities=17%  Similarity=0.243  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHC--CCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEec
Q 026816           53 EARLSNILRSN--GVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQY  130 (232)
Q Consensus        53 ~~rv~~~L~~~--gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~  130 (232)
                      .++++++|+++  || +|++..                 |++ +++++|||+++++              ++|+++|+|+
T Consensus         5 ~~~v~~~L~~~~~~i-~y~~~~-----------------g~~-~~~i~Ktl~~~~~--------------~~~~l~v~p~   51 (457)
T 3mem_A            5 PVVVQQALGDNAPGV-SFRSVS-----------------QID-TGHLLRMVLLSDD--------------QGNLQAICRR   51 (457)
T ss_dssp             CHHHHHHHTTSCTTC-EEEECC-----------------SSC-GGGBEEEEEEEET--------------TEEEEEEEET
T ss_pred             hHHHHHHHHhCCCCC-ceEEeC-----------------CCC-HhHeeeEEEEEEC--------------CcEEEEEecC
Confidence            47899999999  99 776653                 887 9999999999974              3599999999


Q ss_pred             CCccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhh-CCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCC
Q 026816          131 TARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLT-GYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGET  209 (232)
Q Consensus       131 ~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lT-Gy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~  209 (232)
                      ++++|+||+++.+|.        |   ++|++++++.++| ||.+|||||||+++++|+|+|+++.++  +.||++||.+
T Consensus        52 ~~~ldlk~l~~~~g~--------k---~~~~~~~~~~~~~~g~~~Ggv~P~g~~~~~~~~iD~~l~~~--~~i~~~~G~~  118 (457)
T 3mem_A           52 NDMLDLEALNKRLGR--------D---LRMMQRREQVRVRQKAGLQELPALPSLTGWPTVVDRRVDEL--EAVALELGEQ  118 (457)
T ss_dssp             TSEECHHHHHHHHTC--------C---CEECCHHHHHHHHHHHTCSSCCSCGGGTCCCEEEEHHHHHC--SEEEEECSSS
T ss_pred             CCeeCHHHHHHHhCC--------C---CeeCCHHHHHHHcCCCCCCCCCCCCCCcCCCEEEehhhccC--CEEEEECCCC
Confidence            999999999999753        3   8999999999998 699999999999999999999999987  9999999999


Q ss_pred             CceEeeCHHHHHhhhC-CeEeec
Q 026816          210 DLKWGIKTSEFIKFVK-PFIVGC  231 (232)
Q Consensus       210 ~~~l~is~~dl~~l~~-~~v~di  231 (232)
                      +..+.|+++||.++++ +.+.++
T Consensus       119 ~~~i~l~~~dl~~~~~~~~~~~f  141 (457)
T 3mem_A          119 DLGLMMPAEDFRQLTAKAARHDF  141 (457)
T ss_dssp             SEEEEEEHHHHHHHTTTSEEECC
T ss_pred             CceEEECHHHHHHHHccCCcccc
Confidence            9999999999999996 455554

>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*

Probab=99.18  E-value=7e-10  Score=106.66  Aligned_cols=102  Identities=20%  Similarity=0.267  Sum_probs=88.1

Q ss_pred             ccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCccCHHHHHHHhhhccCCCCCCcccccc
Q 026816           80 WPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLR  159 (232)
Q Consensus        80 ~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rld~kkl~~~l~~l~~~~lg~k~~~lr  159 (232)
                      .|.++.+..+|++ ++++.|++++..+              ++++++++++++++|++|++++++.        +  .+.
T Consensus       261 ~ti~~l~~~lg~~-~~~i~K~l~~~~~--------------~~~~~vli~gd~el~~~kl~~~l~~--------~--~l~  315 (572)
T 2j3l_A          261 GTIAEVANFFEVE-PQRIIKSVLFIAD--------------EEPVMVLVRGDHDVNDVKLKNFLGA--------D--FLD  315 (572)
T ss_dssp             CSHHHHHHHHTCC-GGGBEEEEEEEET--------------TEEEEEEEETTCCBCHHHHHHHHTC--------S--CEE
T ss_pred             CcHHHHHHHhCcC-HHHeEEEEEEEeC--------------CcEEEEEeeCccccCHHHHHHhhCC--------C--ccc
Confidence            3578899999997 9999999999852              3689999999999999999998743        3  388


Q ss_pred             cCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCC
Q 026816          160 LAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGE  208 (232)
Q Consensus       160 lA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~  208 (232)
                      +++.+++.++|||..|+++|+|++.++|+++|.+|.+.  +.++.|||.
T Consensus       316 ~a~~~el~~~~g~~~g~~~p~gl~~~i~~~iD~sl~r~--~~~~~ga~~  362 (572)
T 2j3l_A          316 EATEEDARRVLGAGFGSIGPVNVSEDVKIYADLAVQDL--ANAIVGANE  362 (572)
T ss_dssp             ECCHHHHHHHHSSCTTSCCSTTCCTTCEEEEETTTTTC--CSEEEECSS
T ss_pred             cCCHHHHHHhhCCCccccCCccCCCCCcEEEehhhhcC--CceEEccCC
Confidence            99999999999999999999999889999999999986  555566654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1dbxa_	157	d.116.1.1 (A:) Hypothetical protein HI1434 (YbaK h	6e-10
d1wdva_	150	d.116.1.1 (A:) Hypothetical protein APE2540 {Aerop	8e-09

>d1dbxa_ d.116.1.1 (A:) Hypothetical protein HI1434 (YbaK homologue) {Haemophilus influenzae [TaxId: 727]} Length = 157

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein HI1434 (YbaK homologue)
species: Haemophilus influenzae [TaxId: 727]

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 21/177 (11%), Positives = 56/177 (31%), Gaps = 34/177 (19%)

Query: 58  NILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAA-----CIHHLCKSIVLVNTQAQSSV 112
           ++L+   +    F       YD    ++     AA       +   K++++         
Sbjct: 5   DLLKKQKIP---FILHT---YDHDPNNQHFGDEAAEKLGIDPNRSFKTLLV--------- 49

Query: 113 VDCSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGY 172
               + +  K    V+      N +     +              + +A ++ +   TGY
Sbjct: 50  --AENGDQKKLACFVLATANMLNLKKAAKSI----------GVKKVEMADKDAAQKSTGY 97

Query: 173 EHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIV 229
               ++ +G K  +  +++    +   +  ++ GG+  L   I   +  K +     
Sbjct: 98  LVGGISPLGQKKRVKTVINSTALEF--ETIYVSGGKRGLSVEIAPQDLAKVLGAEFT 152

>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum pernix [TaxId: 56636]} Length = 150

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein APE2540
species: Aeropyrum pernix [TaxId: 56636]

 Score = 50.8 bits (121), Expect = 8e-09
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 13/115 (11%)

Query: 115 CSDRNNSKYYVVVVQYTARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEH 174
               N    Y VV+    R N  ++K                 +RLA     + LTGY  
Sbjct: 45  IVLDNAGGVYAVVIPGDKRLNINSMKELAG-----------KPVRLARANEVVELTGYPV 93

Query: 175 NAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWGIKTSEFIKFVKPFIV 229
             V  + +  +I +++D  +        + GGG  +        E ++     + 
Sbjct: 94  GGVPPVALPPNIVLVVDRILLSR--KKVYGGGGRENALLEFSPRELVEATGAVVA 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1wdva_	150	Hypothetical protein APE2540 {Aeropyrum pernix [Ta	100.0
d1dbxa_	157	Hypothetical protein HI1434 (YbaK homologue) {Haem	100.0
d1vkia_	165	Hypothetical protein Atu3699 {Agrobacterium tumefa	99.97
d1vjfa_	168	Hypothetical protein CC0111 {Caulobacter crescentu	99.97

>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein APE2540
species: Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=2.6e-36  Score=245.22  Aligned_cols=149  Identities=17%  Similarity=0.357  Sum_probs=138.3

Q ss_pred             HHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCc
Q 026816           54 ARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTAR  133 (232)
Q Consensus        54 ~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~r  133 (232)
                      +||+++|+++|+ +|++..|+.+  .+|++++|+.+|++ +++++|||++++++             ++|+|+|++++++
T Consensus         1 erv~~~L~~~~i-~~~~~~~~~~--~~t~~e~a~~lgv~-~~~i~Ktlv~~~~~-------------~~~~l~vv~gd~~   63 (150)
T d1wdva_           1 EKVEEWIKARGL-TWRLLIMQKP--TRTVAEAAALLGVS-ESEIVKTLIVLDNA-------------GGVYAVVIPGDKR   63 (150)
T ss_dssp             CHHHHHHHHHTC-CCEEEECSSC--CSSHHHHHHHHTSC-GGGBEEEEEEEETT-------------SCEEEEEEETTCC
T ss_pred             ChHHHHHHhCCC-CcEEEECCCC--CCcHHHHHHHcCCC-HHHhEeeEEEEecC-------------CCEEEEEeccceE
Confidence            589999999999 9999999865  57899999999998 99999999998753             5799999999999


Q ss_pred             cCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceE
Q 026816          134 FNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKW  213 (232)
Q Consensus       134 ld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l  213 (232)
                      +|++|+++.+        |+   +++||++++++++|||.+|+|||||++.++|||+|++++++  +.||+|||+++..+
T Consensus        64 vd~~kl~~~~--------g~---~l~~a~~~e~~~~tG~~~G~v~P~g~~~~~~v~iD~~l~~~--~~v~~~aG~~~~~~  130 (150)
T d1wdva_          64 LNINSMKELA--------GK---PVRLARANEVVELTGYPVGGVPPVALPPNIVLVVDRILLSR--KKVYGGGGRENALL  130 (150)
T ss_dssp             BCHHHHHHHH--------TS---CEEECCHHHHHHHHSSCGGGCCSSSCCTTCEEEEEGGGTTC--SCEEEECSSTTEEE
T ss_pred             ecHHHhhhhh--------hc---ccccCCHHHHHHhcCCCcceeecccCCCCCeEEEEhHHhcC--CeEEEeCCCCCeEE
Confidence            9999999875        32   39999999999999999999999999999999999999986  89999999999999


Q ss_pred             eeCHHHHHhhhCCeEeecC
Q 026816          214 GIKTSEFIKFVKPFIVGCS  232 (232)
Q Consensus       214 ~is~~dl~~l~~~~v~di~  232 (232)
                      +|+++||+++++|+++||+
T Consensus       131 ~i~~~dL~~~~~~~~~di~  149 (150)
T d1wdva_         131 EFSPRELVEATGAVVADVS  149 (150)
T ss_dssp             EECHHHHHHHHTCEEECCB
T ss_pred             EECHHHHHHHHCCEEEecc
Confidence            9999999999999999986

>d1dbxa_ d.116.1.1 (A:) Hypothetical protein HI1434 (YbaK homologue) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein HI1434 (YbaK homologue)
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=4.5e-33  Score=227.17  Aligned_cols=152  Identities=14%  Similarity=0.254  Sum_probs=132.3

Q ss_pred             HHHHHHHCCCCceeEEEcCCCCC-CccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecCCcc
Q 026816           56 LSNILRSNGVNDFQFKKVPSDYY-DWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYTARF  134 (232)
Q Consensus        56 v~~~L~~~gi~~~~~~~~p~~y~-~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~~rl  134 (232)
                      +.++|+++|| +|++.++++.-. ..+.+++|+.||++ +++++|||+++.++           ++++|+++|+++++++
T Consensus         3 a~~~L~~~~I-~y~~~~~~h~~~~~~~~~e~A~~lg~~-~~~i~Ktlv~~~~~-----------~~~~~~~~v~~~d~~v   69 (157)
T d1dbxa_           3 AIDLLKKQKI-PFILHTYDHDPNNQHFGDEAAEKLGID-PNRSFKTLLVAENG-----------DQKKLACFVLATANML   69 (157)
T ss_dssp             HHHHHHHHTC-CCEEEECCCCC-----CCHHHHHHTCC-GGGBEEEEEEEETT-----------CTTSEEEEEEETTSCB
T ss_pred             HHHHHHHCCC-CCEEEeeecCCCccchHHHHHHHcCCC-ccceeEEEEEEeec-----------CCCeEEEEEeCCCCEE
Confidence            5679999999 999886543321 22346789999998 99999999999643           2357999999999999


Q ss_pred             CHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcccCccEEEchhhhccCCCeEEEccCCCCceEe
Q 026816          135 NAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMKTDIPVILDEAITKLSPDFFWLGGGETDLKWG  214 (232)
Q Consensus       135 d~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~~~ipviiD~~l~~l~~~~v~~ggG~~~~~l~  214 (232)
                      |++|+++.++.        ++  ++||++|++.++|||.+|+|||||+++++|||+|++++.+  +.||+|||+++..++
T Consensus        70 d~~kl~~~~~~--------~~--~~~a~~e~~~~~tG~~~G~v~P~g~~~~i~v~iD~~l~~~--~~v~~~aG~~~~~i~  137 (157)
T d1dbxa_          70 NLKKAAKSIGV--------KK--VEMADKDAAQKSTGYLVGGISPLGQKKRVKTVINSTALEF--ETIYVSGGKRGLSVE  137 (157)
T ss_dssp             CHHHHHHHHTC--------SC--EEECCHHHHHHHHSCCTTCCCSSSCSSCCCEEEEGGGGGS--SCEEEECSSTTEEEE
T ss_pred             CHHHHHHHhCC--------cc--cccCCHHHHHHccCCccceeecccccccchHHHhHHHhhC--CEEEEeCCCCCeEEE
Confidence            99999998743        43  8999999999999999999999999999999999999987  899999999999999


Q ss_pred             eCHHHHHhhhCCeEeecC
Q 026816          215 IKTSEFIKFVKPFIVGCS  232 (232)
Q Consensus       215 is~~dl~~l~~~~v~di~  232 (232)
                      |+++||+++++|.|+||+
T Consensus       138 i~~~dl~~l~~~~v~di~  155 (157)
T d1dbxa_         138 IAPQDLAKVLGAEFTDIV  155 (157)
T ss_dssp             ECHHHHHHHHTCEEECCB
T ss_pred             ECHHHHHHHhCCEEEeee
Confidence            999999999999999986

>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium tumefaciens, strain C58 [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein Atu3699
species: Agrobacterium tumefaciens, strain C58 [TaxId: 358]

Probab=99.97  E-value=7.8e-32  Score=221.55  Aligned_cols=153  Identities=16%  Similarity=0.262  Sum_probs=138.3

Q ss_pred             hHHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEec
Q 026816           51 DTEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQY  130 (232)
Q Consensus        51 ~~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~  130 (232)
                      .+.++|.++|+++|| +|+++.||+.   .|++++++.+|.. +++++|||+|++++             ++||++++++
T Consensus         3 ~t~~~l~~~L~~~~I-~y~~~~H~~~---~t~eea~~~~~~~-~~~~~KtL~l~~k~-------------~~~~l~vv~~   64 (165)
T d1vkia_           3 KTATELFEFLDGLGI-SHTTKQHEPV---FTVAESQSLRDLI-PGGHTKNLFVKDKK-------------DQYFVLTVEE   64 (165)
T ss_dssp             CCHHHHHHHHHHHTC-CCEEEECCCC---CSHHHHHHHHTTS-CSEEEEEEEEECTT-------------CCEEEEEEET
T ss_pred             cCHHHHHHHHHHCCC-CEEEEECCCC---CCHHHHHHhcCCC-ccceeEEEEEEecC-------------CceEEEEEeC
Confidence            467899999999999 9999999985   5899999999987 89999999999754             5899999999


Q ss_pred             CCccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcc----cCccEEEchhhhccCCCeEEEcc
Q 026816          131 TARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMK----TDIPVILDEAITKLSPDFFWLGG  206 (232)
Q Consensus       131 ~~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~----~~ipviiD~~l~~l~~~~v~~gg  206 (232)
                      +.++|++++++.++.       .|  +++||++|++.++|||++|+|||||+.    .++|+|+|+++++.  +.||+++
T Consensus        65 d~~vd~~~l~~~~g~-------~k--~l~~a~~e~~~~~~g~~~G~V~Pfg~~~d~~~~v~viiD~~l~~~--~~i~~~~  133 (165)
T d1vkia_          65 NAVVDLKSVHKTIGA-------AS--RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLEN--ELVNGHP  133 (165)
T ss_dssp             TCCBCTTTHHHHHTC-------SS--SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGS--SEEEECS
T ss_pred             ccccCHHHHHHHhcc-------ch--hccccCHHHHHHhhCCCcccccchhhccCcccccceehhhHHhcC--CEEEEeC
Confidence            999999999998742       23  389999999999999999999999984    45999999999985  8999999


Q ss_pred             CCCCceEeeCHHHHHhhh-----CCeEeecC
Q 026816          207 GETDLKWGIKTSEFIKFV-----KPFIVGCS  232 (232)
Q Consensus       207 G~~~~~l~is~~dl~~l~-----~~~v~di~  232 (232)
                      |..+..+.|+++||++++     +|.|+|++
T Consensus       134 g~~~~ti~i~~~dl~k~l~~~~h~~~~~~~~  164 (165)
T d1vkia_         134 LSNDQTTTIASKDLIRFLEATGHAPLVLKVS  164 (165)
T ss_dssp             SSTTEEEEEEHHHHHHHHHHTTCCCEEECCB
T ss_pred             CCCCeEEEECHHHHHHHHHHcCCCeEEEeCC
Confidence            999999999999999999     69999975

>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein CC0111
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.97  E-value=7e-32  Score=222.27  Aligned_cols=151  Identities=19%  Similarity=0.318  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHHCCCCceeEEEcCCCCCCccHHHHHHHhCCCCccceEEEEEEEecccCCccccccCCCCCeEEEEEEecC
Q 026816           52 TEARLSNILRSNGVNDFQFKKVPSDYYDWPLESRRDVLAAACIHHLCKSIVLVNTQAQSSVVDCSDRNNSKYYVVVVQYT  131 (232)
Q Consensus        52 ~~~rv~~~L~~~gi~~~~~~~~p~~y~~~tle~aA~~lg~~s~~~l~KSlvl~n~~~~~~~~~~~d~~~~~y~lvVv~~~  131 (232)
                      +.++|.++|+++|| +|+++.||+.   +|++++|+.+|+. +++++|||++++++             ++|+++++|++
T Consensus         3 ~~~~l~~~L~~~~I-~y~~~~H~~~---~t~~e~a~~~~~~-~~~~~K~l~l~~~~-------------~~~~l~v~~~d   64 (168)
T d1vjfa_           3 TRADLFAFFDAHGV-DHKTLDHPPV---FRVEEGLEIKAAM-PGGHTKNLFLKDAK-------------GQLWLISALGE   64 (168)
T ss_dssp             CHHHHHHHHHHHTC-CCEEEECCCC---CSHHHHHHHHHHS-CSEEEEEEEEEETT-------------SCEEEEEEETT
T ss_pred             cHHHHHHHHHHCCC-CeEEEECCCc---CCHHHHHHhcCCC-ccceEEEEEEEecC-------------cceEEEEecch
Confidence            46899999999999 9999999874   6899999999987 89999999999864             47999999999


Q ss_pred             CccCHHHHHHHhhhccCCCCCCcccccccCCHhhHhhhhCCCCCcccCCCcc----cCccEEEchhhhccCCCeEEEccC
Q 026816          132 ARFNAEAVKNFLYTLNNGKIPKKKFNLRLAPEETSMNLTGYEHNAVTCIGMK----TDIPVILDEAITKLSPDFFWLGGG  207 (232)
Q Consensus       132 ~rld~kkl~~~l~~l~~~~lg~k~~~lrlA~~ee~~~lTGy~~GgVsPfG~~----~~ipviiD~~l~~l~~~~v~~ggG  207 (232)
                      +++|++++++.++.        |+  ++||++|++.++|||++|||||||+.    +++|||+|++++++  +.||+++|
T Consensus        65 ~~~~~k~l~~~lg~--------~~--~~~a~~e~~~~~~G~~~G~v~Pfg~~~d~~~~v~v~iD~~l~~~--~~i~~~~g  132 (168)
T d1vjfa_          65 TTIDLKKLHHVIGS--------GR--LSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADS--DPVNFHPL  132 (168)
T ss_dssp             CCCCTTTHHHHHTC--------SC--EEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTC--SSEEECSS
T ss_pred             hhcchHHHHHHhcc--------cc--ccccCHHHHHHccCCCCCcccccccccCCccCcceeechhHhcC--CEEEEeCC
Confidence            99999999998743        43  89999999999999999999999984    46999999999986  89999999


Q ss_pred             CCCceEeeCHHHHHhhh-----CCeEeecC
Q 026816          208 ETDLKWGIKTSEFIKFV-----KPFIVGCS  232 (232)
Q Consensus       208 ~~~~~l~is~~dl~~l~-----~~~v~di~  232 (232)
                      +.+..+.|+++||++++     .|.|+|++
T Consensus       133 ~~~~ti~l~~~dl~k~l~~~~~~p~~~d~~  162 (168)
T d1vjfa_         133 KNDATTAVSQAGLRRFLAALGVEPMIVDFA  162 (168)
T ss_dssp             STTEEEEECHHHHHHHHHHTTCCCEEEETT
T ss_pred             CCCeEEEECHHHHHHHHHHcCCCcEEEEcc
Confidence            99999999999999995     49999985