Citrus Sinensis ID: 026825

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEYE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccccccccccccccccccEEcccccHEEccccccEccccccccccccccccccccccccccccHHHccccccccHHHHcccccEcccccccccccccEEEEEEEccccccccccccHHHHHHcHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHcHHcccEEEEEccccHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mativssssffsvslpgrlgnsrrcsvkpnpspiFIRKFVAKIRASStafvetkpsepsfveneastsknvlacpicykpltwigdsslsiesaagsslqcntckktysgvgthfdmtaasgskdygelmspateffrmpFMSFIYErgwrqnfvwggfpgpeKEFELMKGYlkpvlggniidascgsglfsRIFAKSGLFSLVVALDYSENMLKQCYEFVQqesnfpkeye
Flexible Loop (DISEMBL)
mativssssffsvslpgrlgnsrrcsvkpnpspiFIRKFVAKIRASSTafvetkpsepsfveneastsknvlACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQqesnfpkeye
Low Complexity Region (SEG)
MATIvssssffsvsLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDsslsiesaagsslQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEYE
Disordered region (IsUnstruct)
********************************PIFIRKFVAKIRASSTAF*******************NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV***********
Disordered Region (DISOPRED)
**********************************************************************VLACPICYKPLTWIGDS*****SAAGSSLQCNTCKKTYSGVGTHFDMTAASGSK***ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ**********
Disordered Region (DISEMBL)
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRAS*********************SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEYE
Disordered Region (DISPRO)
**********FSVSLPGR**NSRRCSVKPNPSPIFIRKFVAKIRASSTAFVET***************KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q8LBV4	355	Uncharacterized methyltra	yes	no	0.698	0.456	0.680	8e-65
Q0WPT7	352	Uncharacterized methyltra	no	no	0.681	0.448	0.493	1e-43

>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1

 Score =  246 bits (629), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 69  KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
           K +LACPICY  L WI   +  IESAA G  +QCNTCK++YSG  TH D+  ASGSK Y 
Sbjct: 73  KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
           E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP +
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNK 235

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 106/158 (67%)

Query: 70  NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGEL 129
            V ACP+CY+PL   G S +++++   S  +C  C KTYS    + D+T  +   DY E+
Sbjct: 77  QVFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEV 136

Query: 130 MSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSG 189
               TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCGSG
Sbjct: 137 KPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSG 196

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
           LFSR FA+SG +S V+ALDYSENML+QC EF++ ++ F
Sbjct: 197 LFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTF 234

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
225459328	350	PREDICTED: uncharacterized methyltransfe	0.978	0.648	0.628	7e-76
224066941	293	predicted protein [Populus trichocarpa]	0.75	0.593	0.752	2e-75
388517893	352	unknown [Lotus japonicus]	0.849	0.559	0.676	1e-74
255545696	351	S-adenosylmethionine-dependent methyltra	0.961	0.635	0.603	1e-73
356508108	352	PREDICTED: uncharacterized methyltransfe	0.866	0.571	0.641	9e-73
297842589	352	predicted protein [Arabidopsis lyrata su	0.741	0.488	0.672	2e-64
18411840	355	S-adenosyl-L-methionine-dependent methyl	0.698	0.456	0.680	4e-63
449437246	313	PREDICTED: uncharacterized methyltransfe	0.724	0.536	0.635	5e-57
449502868	376	PREDICTED: uncharacterized methyltransfe	0.724	0.446	0.635	1e-56
224082138	244	predicted protein [Populus trichocarpa]	0.508	0.483	0.823	2e-53

>gi|225459328|ref|XP_002285799.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Vitis vinifera] gi|302141946|emb|CBI19149.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 147/234 (62%), Positives = 174/234 (74%), Gaps = 7/234 (2%)

Query: 1   MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST---AFVETKPS 56
           MA +++   F +V +PG+LG  R    KP  SP  +   F AK+RASST     VETKP 
Sbjct: 1   MARVIAK--FPTVFVPGQLGQPRDPFFKPLFSPPTVNFVFAAKLRASSTPAAVVVETKP- 57

Query: 57  EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
           +P  VE E S  K++LACPICY+P TW GD  LS+ES  GSS  C++CKK   G  TH D
Sbjct: 58  DPISVEKEISIGKSILACPICYQPFTWNGDLGLSVESMPGSSFHCSSCKKACFGNETHLD 117

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +T A+G+K+Y E M  ATE FR P +SF+YERGWRQNF+WGGFPG EKEFEL KGYLKPV
Sbjct: 118 LTVATGAKEYDESMPAATEIFRTPLISFLYERGWRQNFIWGGFPGLEKEFELAKGYLKPV 177

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           LGG I+DASCGSGLFSR FAKSGLFSLVVALD+SENML+QCYEF++QE  FPKE
Sbjct: 178 LGGTIVDASCGSGLFSRTFAKSGLFSLVVALDFSENMLRQCYEFIKQEEGFPKE 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066941|ref|XP_002302290.1| predicted protein [Populus trichocarpa] gi|222844016|gb|EEE81563.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/174 (75%), Positives = 152/174 (87%)

Query: 57  EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
           +P  VE + S+SKN+LACP+CY+P+T IG + LS++SA GSSLQC+TCKKTYSG  TH +
Sbjct: 1   DPVVVEKDVSSSKNILACPVCYEPVTLIGANVLSVDSARGSSLQCSTCKKTYSGKETHLE 60

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +T ASGSK Y + M  ATEFFR PF+SF+YERGWRQNFVWGGFPGPE EFE+MK YLKPV
Sbjct: 61  LTVASGSKAYDDAMPMATEFFRTPFISFLYERGWRQNFVWGGFPGPEMEFEMMKDYLKPV 120

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           LGGNI+DASCGSGLFSR+FAKSGLFSLV ALDYSENMLKQCYEF++QE NFPKE
Sbjct: 121 LGGNILDASCGSGLFSRLFAKSGLFSLVTALDYSENMLKQCYEFIKQEENFPKE 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517893|gb|AFK47008.1| unknown [Lotus japonicus]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 136/201 (67%), Positives = 161/201 (80%), Gaps = 4/201 (1%)

Query: 34  IFIRKFVAKIRASSTA--FVETKPSEPSFVEN-EASTSKNVLACPICYKPLTWIGDSSLS 90
           +F  KF  ++RA STA   V+ KP++   V++ E   S N LACP+C+  LTW GDS LS
Sbjct: 33  VFPSKFPLQLRAFSTASPIVDPKPTDSIVVDDKEVRRSSNSLACPVCFDSLTWTGDSGLS 92

Query: 91  IESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150
           ++S   SSLQC+TC+KTY G  TH D+TA SG+K+YG+LM  +TE FR+P +SF+YERGW
Sbjct: 93  VDSIPVSSLQCSTCQKTYVGNQTHLDLTATSGAKNYGDLMPASTELFRVPLISFLYERGW 152

Query: 151 RQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
           RQ F VWGGFPGPEKEFELMKG+L PVLGGNIIDASC SGLFSR+FAKSGLFSLVVALDY
Sbjct: 153 RQTFSVWGGFPGPEKEFELMKGFLNPVLGGNIIDASCASGLFSRLFAKSGLFSLVVALDY 212

Query: 210 SENMLKQCYEFVQQESNFPKE 230
           SENML QCYEF+QQE NFPKE
Sbjct: 213 SENMLAQCYEFIQQEDNFPKE 233

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545696|ref|XP_002513908.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546994|gb|EEF48491.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 140/232 (60%), Positives = 175/232 (75%), Gaps = 9/232 (3%)

Query: 7   SSSFFSVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST-----AFVETKPSEPSF 60
           +++  S  LP + GNSR+    P   PIF R  F AK+RASS+     A +E+KP++   
Sbjct: 2   AAATISYYLPNQFGNSRQFLFNPYTRPIFKRSNFAAKVRASSSTSTSTALLESKPADAVV 61

Query: 61  VENE--ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMT 118
           VE E  + +S N++ACPICY+PL+ IGD  LS++     SL+C +CKK Y G  TH ++T
Sbjct: 62  VEKEEVSRSSTNIIACPICYEPLSLIGDRLLSVD-IGECSLRCGSCKKIYYGKETHIELT 120

Query: 119 AASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLG 178
            ASG+  Y + M  ATEFFR+  +SF+YERGWRQNF+WGGFPGPEKEFEL+K YLKPVLG
Sbjct: 121 VASGASKYDDAMPLATEFFRLSLISFLYERGWRQNFIWGGFPGPEKEFELIKDYLKPVLG 180

Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           GNIIDASCGSGLFSR+FAKSGLFSLVVALDYSENML+QCY+F++QE NFP E
Sbjct: 181 GNIIDASCGSGLFSRLFAKSGLFSLVVALDYSENMLQQCYDFIKQEENFPTE 232

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508108|ref|XP_003522802.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Glycine max]

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 164/212 (77%), Gaps = 11/212 (5%)

Query: 30  NPSPIFIRK-FVAKI----RASSTAFV--ETKPSEPSFV---ENEASTSKNVLACPICYK 79
           +P+ +F R  F AK+    RASST+F+  ET P E + V   ++ +S S N LACP+CY 
Sbjct: 22  HPTRLFSRAAFTAKLPLQFRASSTSFIDTETNPRESNVVVVEKDVSSRSSNSLACPVCYD 81

Query: 80  PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRM 139
            LTW GD   S+++  GSS QC+TC+KTY G  TH D+TA  G+K YGE M  +TE FR+
Sbjct: 82  SLTWNGDPGFSVDTITGSSFQCSTCQKTYIGNQTHLDLTATGGAKSYGESMPASTELFRV 141

Query: 140 PFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS 198
           P +SF+YERGWRQ F VWGGFPGPEKEFELMKG+LKP+LGGNIIDASC SGLFSR+FAKS
Sbjct: 142 PLISFLYERGWRQTFSVWGGFPGPEKEFELMKGFLKPILGGNIIDASCASGLFSRLFAKS 201

Query: 199 GLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           GLFS +VALDYSENML+QCYEF+QQE NFPKE
Sbjct: 202 GLFSFIVALDYSENMLQQCYEFIQQEENFPKE 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842589|ref|XP_002889176.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335017|gb|EFH65435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/174 (67%), Positives = 136/174 (78%), Gaps = 2/174 (1%)

Query: 59  SFVENEAST-SKNVLACPICYKPLTWIGDSSLSIESA-AGSSLQCNTCKKTYSGVGTHFD 116
           S +E E +   K VLACPICY  L WI   +  IESA +G+ LQCNTCK++YSG  TH D
Sbjct: 59  SVIEKEKTRGEKKVLACPICYNSLAWISQPNGLIESATSGTQLQCNTCKRSYSGNETHLD 118

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPV
Sbjct: 119 LAVASGSKTYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKDYLKPV 178

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           LGGNIIDASCGSG+FSR+FA+S LFSLV+ALDYSENML+QCYE + QE NFP  
Sbjct: 179 LGGNIIDASCGSGMFSRLFARSELFSLVIALDYSENMLRQCYELLNQEENFPNR 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411840|ref|NP_565170.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|75329938|sp|Q8LBV4.1|Y1814_ARATH RecName: Full=Uncharacterized methyltransferase At1g78140, chloroplastic; Flags: Precursor gi|21592590|gb|AAM64539.1| unknown [Arabidopsis thaliana] gi|28393453|gb|AAO42148.1| unknown protein [Arabidopsis thaliana] gi|28827348|gb|AAO50518.1| unknown protein [Arabidopsis thaliana] gi|332197950|gb|AEE36071.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 69  KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
           K +LACPICY  L WI   +  IESAA G  +QCNTCK++YSG  TH D+  ASGSK Y 
Sbjct: 73  KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
           E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP +
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNK 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437246|ref|XP_004136403.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 131/170 (77%), Gaps = 2/170 (1%)

Query: 62  ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
           +NE +  KN+LAC IC+ PLT    S L +ES  G  L+C TCKK+++G  +H D+T   
Sbjct: 26  DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 85

Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
           G+ D GE M  ATE FR   +SF+YERGWRQ+F V  GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 86  GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 144

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP E
Sbjct: 145 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNE 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502868|ref|XP_004161765.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 131/170 (77%), Gaps = 2/170 (1%)

Query: 62  ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
           +NE +  KN+LAC IC+ PLT    S L +ES  G  L+C TCKK+++G  +H D+T   
Sbjct: 89  DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 148

Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
           G+ D GE M  ATE FR   +SF+YERGWRQ+F V  GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 149 GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 207

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP E
Sbjct: 208 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNE 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082138|ref|XP_002306578.1| predicted protein [Populus trichocarpa] gi|222856027|gb|EEE93574.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/119 (82%), Positives = 109/119 (91%), Gaps = 1/119 (0%)

Query: 113 THFDMTAASGSKDYGELMSP-ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKG 171
           TH ++T ASGSK YG++  P ATEFFR PFMSF+YERGWRQNFVWGGFPGPEKEFELMK 
Sbjct: 7   THLELTVASGSKGYGDIAMPLATEFFRTPFMSFLYERGWRQNFVWGGFPGPEKEFELMKD 66

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           YLKPVLGGNI+DASCGSGLFSR+F KSGLFSLV+ALDYSENML+QCYEF++QE NFPKE
Sbjct: 67  YLKPVLGGNILDASCGSGLFSRLFTKSGLFSLVMALDYSENMLQQCYEFIKQEENFPKE 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2194759	355	AT1G78140 [Arabidopsis thalian	0.827	0.540	0.582	4e-58
TAIR|locus:2063218	352	AT2G41040 [Arabidopsis thalian	0.676	0.446	0.484	3.7e-39

TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 116/199 (58%), Positives = 139/199 (69%)

Query:    39 FVAK-IRASSTAF-VETKP-SEPSFV---ENEASTSKNVLACPICYKPLTWIGD-XXXXX 91
             FV++   ASS +  VET   S   FV   +++    K +LACPICY  L WI        
Sbjct:    37 FVSRSAHASSASVSVETNSNSNVDFVIEKKDKNRGEKKILACPICYNSLAWISQPNGLIE 96

Query:    92 XXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWR 151
                     QCNTCK++YSG  TH D+  ASGSK Y E M  +TE FR P +SF+YERGWR
Sbjct:    97 SAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWR 156

Query:   152 QNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
             QNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCGSG+FSR+F +S LFSLV+ALDYSE
Sbjct:   157 QNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSE 216

Query:   212 NMLKQCYEFVQQESNFPKE 230
             NML+QCYE + +E NFP +
Sbjct:   217 NMLRQCYELLNKEENFPNK 235

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 76/157 (48%), Positives = 99/157 (63%)

Query:    71 VLACPICYKPLTWIGDXXXXXXXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELM 130
             V ACP+CY+PL   G              +C  C KTYS    + D+T  +   DY E+ 
Sbjct:    78 VFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEVK 137

Query:   131 SPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGL 190
                TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCGSGL
Sbjct:   138 PITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSGL 197

Query:   191 FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
             FSR FA+SG +S V+ALDYSENML+QC EF++ ++ F
Sbjct:   198 FSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTF 234


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       209   0.00079  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  182 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.27u 0.12s 18.39t   Elapsed:  00:00:00
  Total cpu time:  18.27u 0.12s 18.39t   Elapsed:  00:00:00
  Start:  Sat May 11 06:56:14 2013   End:  Sat May 11 06:56:14 2013

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	5e-06
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	5e-05
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	6e-05
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	3e-04
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	4e-04
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	7e-04
pfam03966	47	pfam03966, Trm112p, Trm112p-like protein	8e-04
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	0.002
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	0.002
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	0.003
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	0.004

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 15/77 (19%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
             MSF   R WR+  +            L+   +KP  G  ++D +CG+G  + + AKS 
Sbjct: 29  DLMSFGLHRLWRRALI-----------SLLG--IKP--GDKVLDVACGTGDMALLLAKSV 73

Query: 200 LFSLVVALDYSENMLKQ 216
               VV LD SE+ML+ 
Sbjct: 74  GTGEVVGLDISESMLEV 90

Length = 238

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
           ++D  CG+G  +R   K    +  +A D S  ML Q 
Sbjct: 38  VLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA 74

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
           G  ++D  CG+G  +   A+    + V  +D S  ML+  
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELA 41

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML 214
            P+ G  ++DA CG+GL S   AK G  ++V A+D SE M+
Sbjct: 52  DPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMV 90

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
           +D  CG+GL +   A+ G  + V  +D S  ML   
Sbjct: 1   LDVGCGTGLLAEALARRG-GARVTGVDLSPEMLALA 35

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
           I+D  CG+G   R  A++G  S V  +D S+  L+   E ++
Sbjct: 1   ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERLR 41

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|217819 pfam03966, Trm112p, Trm112p-like protein

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 70  NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108
            +LACP+C  PL  +  +           L C  C   Y
Sbjct: 6   EILACPLCKGPLALVEVAGH--YDIEEGELVCPECGLAY 42

The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices. Length = 47

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)

Query: 167 ELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
           EL+K  LK    P     ++D + G G  S  F K   +  VVALDY+ENMLK
Sbjct: 40  ELVKTILKYCGRPKK---VLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK 88

Length = 226

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 16/76 (21%)

Query: 141 FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL 200
            +SF   R WR+  V                 +    G  ++D +CG+G  +   AKS  
Sbjct: 18  LLSFGLHRLWRRRAV---------------KLIGVFKGQKVLDVACGTGDLAIELAKSAP 62

Query: 201 FSL-VVALDYSENMLK 215
               V  +D+S  ML+
Sbjct: 63  DRGKVTGVDFSSEMLE 78

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 37.4 bits (88), Expect = 0.003
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 16/75 (21%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGL 200
           +SF   R WR+  +                +L    G  ++D +CG+G  +   AK  G 
Sbjct: 31  LSFGLHRVWRRKTI---------------KWLGVRPGDKVLDLACGTGDLAIALAKAVGK 75

Query: 201 FSLVVALDYSENMLK 215
              VV LD+SE ML 
Sbjct: 76  TGEVVGLDFSEGMLA 90

Length = 239

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 37.2 bits (83), Expect = 0.004
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 129 LMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGS 188
               + E        +         F+       +    L    L P   G ++D  CG+
Sbjct: 1   DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLG-VLDIGCGT 59

Query: 189 GLFSRIFAKSGLFSLVVALDYSENMLKQ 216
           G  + +    G  + VV +D S  ML  
Sbjct: 60  GRLALLARLGGRGAYVVGVDLSPEMLAL 87

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.73
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.46
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.46
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.15
PRK05785	226	hypothetical protein; Provisional	99.11
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.1
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.07
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.98
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.98
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.97
PRK11207	197	tellurite resistance protein TehB; Provisional	98.95
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.93
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.9
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.87
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.86
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.85
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.84
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.83
PLN02244	340	tocopherol O-methyltransferase	98.83
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.83
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.82
PRK07402	196	precorrin-6B methylase; Provisional	98.82
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.8
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.8
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.79
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.75
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.75
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.74
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.74
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.73
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.72
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.72
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.72
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.72
PRK12335	287	tellurite resistance protein TehB; Provisional	98.71
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.71
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.71
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.7
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.69
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.69
PRK14968	188	putative methyltransferase; Provisional	98.69
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.68
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.67
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.66
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.66
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.66
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.64
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.64
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.64
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.63
PRK06202	232	hypothetical protein; Provisional	98.63
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.63
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.62
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.61
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.61
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.61
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.61
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.6
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.59
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.58
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.58
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.57
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.57
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.57
TIGR03438	301	probable methyltransferase. This model represents	98.57
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.57
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.57
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.56
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.55
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.55
COG2890	280	HemK Methylase of polypeptide chain release factor	98.53
PRK04266	226	fibrillarin; Provisional	98.53
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.52
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.52
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.51
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.51
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.5
PRK04148	134	hypothetical protein; Provisional	98.49
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.49
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.48
KOG1271	227	consensus Methyltransferases [General function pre	98.47
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.47
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.46
PRK14967	223	putative methyltransferase; Provisional	98.46
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.45
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.45
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.44
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.44
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.43
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.42
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.42
PHA03411	279	putative methyltransferase; Provisional	98.41
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.41
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.41
PRK08317	241	hypothetical protein; Provisional	98.4
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.4
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.39
PRK06922	677	hypothetical protein; Provisional	98.38
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.38
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.37
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.37
PLN02336	475	phosphoethanolamine N-methyltransferase	98.37
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.36
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.35
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.35
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.33
PLN02336	475	phosphoethanolamine N-methyltransferase	98.33
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.32
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.32
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.32
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.31
COG4123	248	Predicted O-methyltransferase [General function pr	98.3
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.3
PLN02490	340	MPBQ/MSBQ methyltransferase	98.3
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.3
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.29
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.27
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.27
PHA03412	241	putative methyltransferase; Provisional	98.24
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.23
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.23
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.22
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.2
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.19
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.19
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.18
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.17
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.16
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.15
PLN02672	1082	methionine S-methyltransferase	98.15
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.13
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.13
KOG3010	261	consensus Methyltransferase [General function pred	98.12
KOG2904	328	consensus Predicted methyltransferase [General fun	98.11
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.1
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.09
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.09
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.08
PRK11827	60	hypothetical protein; Provisional	98.08
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.08
COG2835	60	Uncharacterized conserved protein [Function unknow	98.07
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.07
PRK04457	262	spermidine synthase; Provisional	98.07
PLN03075	296	nicotianamine synthase; Provisional	98.05
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.04
PTZ00146	293	fibrillarin; Provisional	98.04
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.02
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.0
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.99
TIGR00438	188	rrmJ cell division protein FtsJ.	97.93
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.93
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.9
PF13679	141	Methyltransf_32: Methyltransferase domain	97.89
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.85
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.84
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.83
PRK00811	283	spermidine synthase; Provisional	97.83
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.8
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.75
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.75
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.68
PLN02476	278	O-methyltransferase	97.67
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.63
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.62
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	97.61
KOG4300	252	consensus Predicted methyltransferase [General fun	97.61
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.58
KOG2899	288	consensus Predicted methyltransferase [General fun	97.56
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.54
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.53
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.52
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.5
COG4122	219	Predicted O-methyltransferase [General function pr	97.5
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.47
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.47
PLN02366	308	spermidine synthase	97.45
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.44
PRK01581	374	speE spermidine synthase; Validated	97.42
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.42
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.34
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.31
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.3
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.29
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.27
PRK03612	521	spermidine synthase; Provisional	97.25
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.21
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.2
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.07
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.05
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.05
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.04
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.03
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.0
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.87
COG2520	341	Predicted methyltransferase [General function pred	96.71
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.7
PHA01634	156	hypothetical protein	96.66
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.62
PRK11524	284	putative methyltransferase; Provisional	96.61
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.61
KOG2361	264	consensus Predicted methyltransferase [General fun	96.58
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.57
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.56
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.56
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.51
PRK13699	227	putative methylase; Provisional	96.47
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.46
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.42
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.4
PLN02823	336	spermine synthase	96.38
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.38
KOG2730	263	consensus Methylase [General function prediction o	96.37
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.35
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.35
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.34
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.32
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.13
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	95.88
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	95.86
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	95.85
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.83
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	95.79
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	95.63
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.54
COG4076	252	Predicted RNA methylase [General function predicti	95.5
KOG3115	249	consensus Methyltransferase-like protein [General	95.47
PRK00420	112	hypothetical protein; Validated	95.46
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	95.43
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	95.42
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	95.29
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.28
COG3897	218	Predicted methyltransferase [General function pred	95.16
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.16
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.16
COG0286	489	HsdM Type I restriction-modification system methyl	95.07
PRK10742	250	putative methyltransferase; Provisional	94.92
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	94.87
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	94.83
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	94.74
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.54
KOG4058	199	consensus Uncharacterized conserved protein [Funct	94.42
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	94.39
PRK00536	262	speE spermidine synthase; Provisional	94.36
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	94.29
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	94.27
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	94.05
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.03
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	93.84
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.82
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	93.61
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	93.48
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	93.47
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	93.47
KOG2940	325	consensus Predicted methyltransferase [General fun	93.43
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	93.39
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	93.35
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	93.24
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	93.04
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	92.95
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	92.7
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.41
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	92.03
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	91.67
smart00661	52	RPOL9 RNA polymerase subunit 9.	91.57
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	91.48
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	91.4
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	91.32
COG1656	165	Uncharacterized conserved protein [Function unknow	91.21
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	91.08
PF14353	128	CpXC: CpXC protein	91.06
KOG1088	124	consensus Uncharacterized conserved protein [Funct	90.96
PRK00432	50	30S ribosomal protein S27ae; Validated	90.87
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	90.81
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	90.81
KOG1227	351	consensus Putative methyltransferase [General func	90.78
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	90.74
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	90.52
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	90.06
COG3809	88	Uncharacterized protein conserved in bacteria [Fun	89.96
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	89.77
PF11781	36	RRN7: RNA polymerase I-specific transcription init	89.7
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	89.55
COG3129	292	Predicted SAM-dependent methyltransferase [General	89.47
KOG1331	293	consensus Predicted methyltransferase [General fun	89.44
PRK09678	72	DNA-binding transcriptional regulator; Provisional	89.41
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	88.65
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	88.61
COG0863	302	DNA modification methylase [DNA replication, recom	88.23
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	88.22
PRK10220	111	hypothetical protein; Provisional	88.08
PHA00626	59	hypothetical protein	87.73
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	87.57
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	87.31
COG1326	201	Uncharacterized archaeal Zn-finger protein [Genera	87.23
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	87.21
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	87.2
KOG2078	495	consensus tRNA modification enzyme [RNA processing	87.17
smart00531	147	TFIIE Transcription initiation factor IIE.	86.89
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	86.67
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	86.63
KOG2906	105	consensus RNA polymerase III subunit C11 [Transcri	86.56
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	86.55
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	86.45
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	86.34
COG2521	287	Predicted archaeal methyltransferase [General func	86.21
COG1565	370	Uncharacterized conserved protein [Function unknow	85.55
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	85.36
PRK06266	178	transcription initiation factor E subunit alpha; V	85.15
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	84.8
KOG2920	282	consensus Predicted methyltransferase [General fun	84.61
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.45
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.42
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	84.38
COG1571	421	Predicted DNA-binding protein containing a Zn-ribb	84.29
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.95
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	83.68
PF13453	41	zf-TFIIB: Transcription factor zinc-finger	83.66
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	83.59
PRK03564	309	formate dehydrogenase accessory protein FdhE; Prov	83.58
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	83.27
COG4262	508	Predicted spermidine synthase with an N-terminal m	83.15
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	82.71
PF04606	47	Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I	82.44
PF13248	26	zf-ribbon_3: zinc-ribbon domain	82.43
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	82.07
TIGR01562	305	FdhE formate dehydrogenase accessory protein FdhE.	81.99
COG2051	67	RPS27A Ribosomal protein S27E [Translation, riboso	81.95
PHA02998	195	RNA polymerase subunit; Provisional	81.6
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	81.54
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	81.47
PF04216	290	FdhE: Protein involved in formate dehydrogenase fo	81.38
COG1779	201	C4-type Zn-finger protein [General function predic	81.36
PRK12495	226	hypothetical protein; Provisional	81.21
KOG2907	116	consensus RNA polymerase I transcription factor TF	81.19
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	80.72
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	80.51
COG3877	122	Uncharacterized protein conserved in bacteria [Fun	80.43

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.73  E-value=3.4e-17  Score=142.62  Aligned_cols=127  Identities=18%  Similarity=0.261  Sum_probs=89.4

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccccCCcccccccchhhhhccCchhhHHHHHHH
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW  150 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~w  150 (232)
                      .|.||+|+++|...+           ..++|.++|.++..++||++++........+..           ......  ..
T Consensus         2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~-----------d~~~~~--~a   57 (272)
T PRK11088          2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG-----------DNKEMM--QA   57 (272)
T ss_pred             cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC-----------cCHHHH--HH
Confidence            489999999996542           579999999999999999999964222211111           000111  11


Q ss_pred             HHHHHhcCCCCcHHH--HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHhh
Q 026825          151 RQNFVWGGFPGPEKE--FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       151 r~~f~~~g~~~~~~~--~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~---~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      |+.|+..|+|.+...  ...+.+.+.. ...+|||+|||+|.++..+++....   ..|+|+|+|+.|++.|+++..
T Consensus        58 r~~fl~~g~y~~l~~~i~~~l~~~l~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~  133 (272)
T PRK11088         58 RRAFLDAGHYQPLRDAVANLLAERLDE-KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP  133 (272)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHhcCC-CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC
Confidence            567778888877432  2344444443 4578999999999999999876431   379999999999999998753

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.46  E-value=7.5e-14  Score=119.18  Aligned_cols=93  Identities=28%  Similarity=0.378  Sum_probs=79.0

Q ss_pred             CCccccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChH
Q 026825          112 GTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLF  191 (232)
Q Consensus       112 ~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~  191 (232)
                      +..+..+|+.+++.||.+         |++++++.++.||+.+..               .+...++.+|||||||||.+
T Consensus        10 ~~~v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i~---------------~~~~~~g~~vLDva~GTGd~   65 (238)
T COG2226          10 QEKVQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRALIS---------------LLGIKPGDKVLDVACGTGDM   65 (238)
T ss_pred             HHHHHHHHHhhHHHHHhh---------cccccCcchHHHHHHHHH---------------hhCCCCCCEEEEecCCccHH
Confidence            345667778889999999         999999999999997533               33333689999999999999


Q ss_pred             HHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          192 SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       192 ~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      +..+++....++|+|+|+|++||+.|++++.+.+..+
T Consensus        66 a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~  102 (238)
T COG2226          66 ALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN  102 (238)
T ss_pred             HHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc
Confidence            9999999657799999999999999999999866543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.46  E-value=6.7e-14  Score=119.58  Aligned_cols=92  Identities=24%  Similarity=0.375  Sum_probs=43.1

Q ss_pred             CCccccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChH
Q 026825          112 GTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLF  191 (232)
Q Consensus       112 ~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~  191 (232)
                      +.++..+|+.+++.||.+         |.+++++.++.||+....               .+...++.+|||+|||||.+
T Consensus         6 ~~~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~~~---------------~~~~~~g~~vLDv~~GtG~~   61 (233)
T PF01209_consen    6 EQYVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKLIK---------------LLGLRPGDRVLDVACGTGDV   61 (233)
T ss_dssp             ----------------------------------------SHHHH---------------HHT--S--EEEEET-TTSHH
T ss_pred             HHHHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHHHh---------------ccCCCCCCEEEEeCCChHHH
Confidence            456777888889999999         999999999999997533               44455688999999999999


Q ss_pred             HHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          192 SRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       192 ~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +..++++ ++.++|+|+|+|++||+.|++++.+.+..
T Consensus        62 ~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~   98 (233)
T PF01209_consen   62 TRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ   98 (233)
T ss_dssp             HHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC
Confidence            9999887 55679999999999999999999876543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.15  E-value=7.3e-11  Score=102.45  Aligned_cols=84  Identities=21%  Similarity=0.317  Sum_probs=64.3

Q ss_pred             cccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHH
Q 026825          115 FDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI  194 (232)
Q Consensus       115 ~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~  194 (232)
                      +...|+..++.||.+         +...+.+.+..|++....               .+...++.+|||+|||+|.++..
T Consensus        35 v~~~f~~~A~~YD~~---------~~~~s~g~~~~~r~~~~~---------------~~~~~~~~~VLDlGcGtG~~~~~   90 (261)
T PLN02233         35 RQALFNRIAPVYDNL---------NDLLSLGQHRIWKRMAVS---------------WSGAKMGDRVLDLCCGSGDLAFL   90 (261)
T ss_pred             HHHHHHHhhhHHHHh---------hhhhcCChhHHHHHHHHH---------------HhCCCCCCEEEEECCcCCHHHHH
Confidence            344556667888887         666666677778775322               34444578999999999999999


Q ss_pred             HHHh-CCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          195 FAKS-GLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       195 la~~-g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +++. ++.++|+|+|+|++|++.|+++..
T Consensus        91 la~~~~~~~~V~gvD~S~~ml~~A~~r~~  119 (261)
T PLN02233         91 LSEKVGSDGKVMGLDFSSEQLAVAASRQE  119 (261)
T ss_pred             HHHHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence            9887 555699999999999999998764

>PRK05785 hypothetical protein; Provisional

Probab=99.11  E-value=7.3e-11  Score=100.40  Aligned_cols=82  Identities=32%  Similarity=0.391  Sum_probs=61.7

Q ss_pred             ccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHH
Q 026825          116 DMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIF  195 (232)
Q Consensus       116 d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~l  195 (232)
                      ...|+..++.||.+         |.+++++.+..|++.++.           .+......  +.+|||||||||.++..+
T Consensus        12 ~~~f~~iA~~YD~~---------n~~~s~g~~~~wr~~~~~-----------~l~~~~~~--~~~VLDlGcGtG~~~~~l   69 (226)
T PRK05785         12 QEAYNKIPKAYDRA---------NRFISFNQDVRWRAELVK-----------TILKYCGR--PKKVLDVAAGKGELSYHF   69 (226)
T ss_pred             HHHHHhhhHHHHHh---------hhhccCCCcHHHHHHHHH-----------HHHHhcCC--CCeEEEEcCCCCHHHHHH
Confidence            34455667788887         666666677778776432           23333333  689999999999999999


Q ss_pred             HHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          196 AKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       196 a~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ++.. +.+|+|+|+|++|++.|+++
T Consensus        70 ~~~~-~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         70 KKVF-KYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             HHhc-CCEEEEECCCHHHHHHHHhc
Confidence            9984 23999999999999999886

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.10  E-value=2.8e-10  Score=85.19  Aligned_cols=47  Identities=32%  Similarity=0.435  Sum_probs=41.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      |+.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~   47 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE   47 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            47899999999999999999953345999999999999999999943

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.07  E-value=2.7e-10  Score=96.33  Aligned_cols=56  Identities=29%  Similarity=0.421  Sum_probs=47.1

Q ss_pred             HhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+...++.+|||+|||+|.++..+++. ++.++|+|+|+|+.|++.|++++...+
T Consensus        38 l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~   94 (231)
T TIGR02752        38 MKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG   94 (231)
T ss_pred             HHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            33556556889999999999999999887 455699999999999999999987544

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.98  E-value=5.9e-10  Score=95.17  Aligned_cols=92  Identities=23%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             CCccccccccCCcccccccchhhhhccCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChH
Q 026825          112 GTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLF  191 (232)
Q Consensus       112 ~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~  191 (232)
                      +..+...|+..+..||.+         |+.++.+..+.|+..+..               .|.+.++.++||++||||.+
T Consensus        59 e~~V~~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~v~---------------~L~p~~~m~~lDvaGGTGDi  114 (296)
T KOG1540|consen   59 ERLVHHVFESVAKKYDIM---------NDAMSLGIHRLWKDMFVS---------------KLGPGKGMKVLDVAGGTGDI  114 (296)
T ss_pred             hhHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHhhh---------------ccCCCCCCeEEEecCCcchh
Confidence            344556677778889999         999999999999887655               77777889999999999999


Q ss_pred             HHHHHHhCCC------CeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          192 SRIFAKSGLF------SLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       192 ~~~la~~g~~------~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +..+.+.-..      ++|+++|+|+.||+.++++..+.+..
T Consensus       115 aFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~  156 (296)
T KOG1540|consen  115 AFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK  156 (296)
T ss_pred             HHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC
Confidence            9888887544      79999999999999999999765543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.98  E-value=3.1e-09  Score=87.94  Aligned_cols=69  Identities=17%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          147 ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       147 e~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +..|++.++.         ...+...++.  +.+|||+|||+|..+..++......+|+|+|+|+.|++.|++++++.+.
T Consensus        26 ~~~~~~~~~d---------~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l   94 (187)
T PRK00107         26 EELWERHILD---------SLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL   94 (187)
T ss_pred             HHHHHHHHHH---------HHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC
Confidence            3467776644         2233344443  7899999999999999998876566999999999999999999988765

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.97  E-value=1.3e-09  Score=86.51  Aligned_cols=51  Identities=22%  Similarity=0.272  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~-~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+.+|||+|||+|.++..+++ .+...+++|+|+|+.|++.|++++++.+..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~   54 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD   54 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc
Confidence            478999999999999999994 455669999999999999999998876654

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.95  E-value=2.4e-09  Score=89.09  Aligned_cols=57  Identities=25%  Similarity=0.256  Sum_probs=48.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+.+...++++|||+|||+|.++..|+++|.  +|+|+|+|+.|++.|++++...+.
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~~   77 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAENL   77 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCC
Confidence            344455555678999999999999999999987  999999999999999998876543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.93  E-value=2.5e-09  Score=88.80  Aligned_cols=56  Identities=21%  Similarity=0.297  Sum_probs=47.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+.+.+...++++|||+|||+|.++..++++|.  +|+|+|+|+.|++.+++++...+
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~   76 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAREN   76 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhC
Confidence            344455555678999999999999999999987  99999999999999999887554

Part of a tellurite-reducing operon tehA and tehB

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.90  E-value=6.5e-09  Score=89.66  Aligned_cols=56  Identities=20%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+.++ .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++.+.+.
T Consensus        36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~   91 (255)
T PRK11036         36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGV   91 (255)
T ss_pred             HHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC
Confidence            3444454 3468999999999999999999987  999999999999999999876553

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.87  E-value=6.2e-09  Score=89.53  Aligned_cols=49  Identities=18%  Similarity=0.344  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~--g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||||||+|..+..+++.  .++.+|+|+|+|+.|++.|++++...+
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~  106 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK  106 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence            4789999999999999888873  345699999999999999999997644

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.86  E-value=1.7e-08  Score=76.45  Aligned_cols=57  Identities=18%  Similarity=0.085  Sum_probs=47.8

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.++++++..+
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~   67 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG   67 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC
Confidence            444555545779999999999999999998655699999999999999999987654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.85  E-value=1.2e-08  Score=83.93  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..++..++.++|+|+|+|+.|++.+++++++.+.
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~   91 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL   91 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC
Confidence            47899999999999999998877667999999999999999999887653

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.84  E-value=2.2e-08  Score=82.32  Aligned_cols=59  Identities=22%  Similarity=0.103  Sum_probs=50.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+...+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.|++.|++++...+
T Consensus        21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~   79 (187)
T PRK08287         21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG   79 (187)
T ss_pred             HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence            34445666556889999999999999999998766799999999999999999987654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.83  E-value=1.1e-08  Score=89.21  Aligned_cols=61  Identities=21%  Similarity=0.179  Sum_probs=53.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++.+.+.+...+|.+|||||||.|.+++++++.. +.+|+|+++|+++++.+++++...|.-
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~  121 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLE  121 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence            4566777888889999999999999999999994 239999999999999999999988764

>PLN02244 tocopherol O-methyltransferase

Probab=98.83  E-value=1.6e-08  Score=91.02  Aligned_cols=50  Identities=20%  Similarity=0.184  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||||||+|.++..+++.. +.+|+|||+|+.|++.|++++...+.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~  166 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL  166 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC
Confidence            467899999999999999999873 23999999999999999998876553

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.83  E-value=3.9e-09  Score=94.06  Aligned_cols=46  Identities=28%  Similarity=0.431  Sum_probs=42.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++.+|||+|||+|.++..+++.|.  +|+|+|+|+.|++.|+++++..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~  189 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEA  189 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc
Confidence            578999999999999999999987  9999999999999999998754

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.82  E-value=1.3e-08  Score=84.52  Aligned_cols=55  Identities=24%  Similarity=0.351  Sum_probs=45.1

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.+.++..+++++||+|||.|+.+.+|+++|+  .|+++|+|+.+++.+++.+.+.+
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~   76 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG   76 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC
Confidence            33445555689999999999999999999999  99999999999999988877654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.82  E-value=2.4e-08  Score=82.79  Aligned_cols=60  Identities=13%  Similarity=0.063  Sum_probs=50.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++++...+.
T Consensus        30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~   89 (196)
T PRK07402         30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV   89 (196)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            345666666678899999999999999998776556999999999999999999876553

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.80  E-value=2.3e-08  Score=84.39  Aligned_cols=42  Identities=24%  Similarity=0.367  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ++++|||+|||.|..+..|+++|+  +|+|||+|+.+++.+.+.
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~   75 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAE   75 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHH
Confidence            578999999999999999999999  999999999999987553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.80  E-value=1.7e-08  Score=85.03  Aligned_cols=48  Identities=38%  Similarity=0.597  Sum_probs=43.4

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|++|+..|++++...+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~  101 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD  101 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            4578999999999999999998876  99999999999999999987554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.79  E-value=9.5e-09  Score=87.28  Aligned_cols=53  Identities=25%  Similarity=0.434  Sum_probs=47.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY  231 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~  231 (232)
                      .++.+|||||||-|.++..+++.|+  .|+|+|+|+.+++.|+.++.+.+. +.+|
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~gv-~i~y  110 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESGV-NIDY  110 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhccc-cccc
Confidence            4689999999999999999999998  999999999999999999887664 3444

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.75  E-value=2.6e-08  Score=85.85  Aligned_cols=53  Identities=23%  Similarity=0.301  Sum_probs=45.1

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~   72 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER   72 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc
Confidence            34555666678999999999999999999986555999999999999999874

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.75  E-value=2.1e-08  Score=86.31  Aligned_cols=56  Identities=14%  Similarity=0.188  Sum_probs=47.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++.+
T Consensus        22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~   77 (258)
T PRK01683         22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPD   77 (258)
T ss_pred             HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCC
Confidence            44455655668899999999999999999886556999999999999999998653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.74  E-value=2.5e-08  Score=81.01  Aligned_cols=61  Identities=28%  Similarity=0.391  Sum_probs=51.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..+.+.+...+.++|||+|||+|.++..+++.++..+|+++|+++.+++.|++++..++..
T Consensus        21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~   81 (170)
T PF05175_consen   21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE   81 (170)
T ss_dssp             HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence            4455555444688999999999999999999988667999999999999999999887643

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.74  E-value=6.1e-08  Score=81.13  Aligned_cols=60  Identities=15%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+...++.+|||+|||+|..+..+++.. ..++|+|+|++++|++.|++++...+.
T Consensus        62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~  122 (205)
T PRK13944         62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY  122 (205)
T ss_pred             HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            445556666678899999999999999888863 245999999999999999999887653

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.73  E-value=3e-08  Score=85.06  Aligned_cols=54  Identities=31%  Similarity=0.426  Sum_probs=46.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ..+.+.++..+..+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++..
T Consensus        32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~~   85 (251)
T PRK10258         32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKDA   85 (251)
T ss_pred             HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCC
Confidence            4455566655578999999999999999988876  99999999999999999864

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.72  E-value=2.7e-08  Score=73.56  Aligned_cols=45  Identities=29%  Similarity=0.457  Sum_probs=36.6

Q ss_pred             EEEEcCCcChHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       181 ILDiGCGtG~~~~~la~~g---~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      |||+|||+|..+..+.+..   +..+++|+|+|++|++.|+++....+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~   48 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG   48 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC
Confidence            7999999999999999885   33599999999999999999997644

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.72  E-value=3.5e-08  Score=82.73  Aligned_cols=46  Identities=9%  Similarity=0.179  Sum_probs=40.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++.+|||||||+|.++..+++.....+++|+|+|+.|++.|++++.
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~   88 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP   88 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC
Confidence            4678999999999999999887434599999999999999998764

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.72  E-value=1.5e-08  Score=86.94  Aligned_cols=47  Identities=32%  Similarity=0.569  Sum_probs=43.0

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.+|||+|||+|.++..|++.|+  .|+|||+++.|++.|++....++.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~  136 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPV  136 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCch
Confidence            57899999999999999999998  999999999999999999665543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.72  E-value=5.1e-08  Score=82.02  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+...++.+|||||||+|.++..+++... .++|+|+|+++.|++.|++++.+.+.
T Consensus        67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~  127 (215)
T TIGR00080        67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL  127 (215)
T ss_pred             HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            4455566666789999999999999999998843 45699999999999999999987664

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.71  E-value=3.8e-08  Score=86.49  Aligned_cols=48  Identities=29%  Similarity=0.410  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++++|||+|||+|.++..+++.|.  +|+|+|+|+.|++.+++++...+.
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~l  167 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKENL  167 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence            457999999999999999999987  999999999999999999876553

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.71  E-value=4.7e-08  Score=82.37  Aligned_cols=48  Identities=35%  Similarity=0.500  Sum_probs=43.4

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~  109 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG  109 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            4578999999999999999999887  89999999999999999987654

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.71  E-value=4.3e-08  Score=81.90  Aligned_cols=50  Identities=14%  Similarity=0.117  Sum_probs=44.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++++...+.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~   89 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL   89 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC
Confidence            57899999999999999999886656899999999999999999876543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.70  E-value=6.9e-08  Score=84.47  Aligned_cols=60  Identities=22%  Similarity=0.282  Sum_probs=48.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++.+.+.+...++.+|||||||.|.++..++++ |.  +|+||.+|+++++.|++++.+.|+.
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~--~v~gitlS~~Q~~~a~~~~~~~gl~  111 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC--HVTGITLSEEQAEYARERIREAGLE  111 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc--EEEEEECCHHHHHHHHHHHHhcCCC
Confidence            456677777788999999999999999999999 76  9999999999999999999988764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.69  E-value=5.9e-08  Score=82.20  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=38.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .++++|||+|||.|..+..|+++|+  +|+|||+|+.+++.+.+
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~   77 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFA   77 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHH
Confidence            3578999999999999999999999  99999999999998754

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=6e-08  Score=85.36  Aligned_cols=68  Identities=26%  Similarity=0.399  Sum_probs=57.1

Q ss_pred             cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +.|+....-++++.+++.  ++.++||+|||+|.+++..++.|+ .+|+|+|+++-+++.|++++..++..
T Consensus       144 G~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~  211 (300)
T COG2264         144 GTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVE  211 (300)
T ss_pred             CCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCc
Confidence            345555555677777766  489999999999999999999998 48999999999999999999887653

>PRK14968 putative methyltransferase; Provisional

Probab=98.69  E-value=5.9e-08  Score=78.96  Aligned_cols=67  Identities=18%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             CCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       158 g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      |.|.|......+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.+++++...+.
T Consensus         4 ~~~~p~~~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~   70 (188)
T PRK14968          4 EVYEPAEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGK--KVVGVDINPYAVECAKCNAKLNNI   70 (188)
T ss_pred             cccCcchhHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcc--eEEEEECCHHHHHHHHHHHHHcCC
Confidence            3344444444455555445678999999999999999999865  999999999999999999876543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.68  E-value=1e-07  Score=80.22  Aligned_cols=60  Identities=17%  Similarity=0.257  Sum_probs=50.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+...++.+|||||||+|.++..+++. +.+++|+|+|++++|++.|+++++..+.
T Consensus        66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~  126 (212)
T PRK13942         66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY  126 (212)
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            44555666667899999999999999998887 4446999999999999999999987653

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.67  E-value=5.7e-08  Score=79.31  Aligned_cols=56  Identities=16%  Similarity=0.309  Sum_probs=47.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~   65 (179)
T TIGR00537        10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN   65 (179)
T ss_pred             HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC
Confidence            344444444568999999999999999999987  99999999999999999987554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.66  E-value=8.4e-08  Score=83.37  Aligned_cols=59  Identities=12%  Similarity=0.045  Sum_probs=48.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .....+...+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.|++++..
T Consensus        39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~   97 (263)
T PTZ00098         39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD   97 (263)
T ss_pred             HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc
Confidence            335566666777778999999999999999887753 24999999999999999998764

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.66  E-value=7.5e-08  Score=87.75  Aligned_cols=60  Identities=22%  Similarity=0.263  Sum_probs=51.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+.+.++....++|||+|||+|.++..++++++..+|+++|+|+.|++.|++++..++
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~  276 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM  276 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            456777777655679999999999999999999877799999999999999999987553

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.66  E-value=4.1e-08  Score=86.66  Aligned_cols=59  Identities=31%  Similarity=0.474  Sum_probs=49.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++.+.++..  ++.+|||+|||+|.++...++.|. .+|+|+|+++.+++.|++++..++..
T Consensus       152 l~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~  210 (295)
T PF06325_consen  152 LELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVE  210 (295)
T ss_dssp             HHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCC
Confidence            455555544  478999999999999999999998 48999999999999999999877654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.64  E-value=5.4e-08  Score=81.72  Aligned_cols=48  Identities=35%  Similarity=0.495  Sum_probs=41.8

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++.....-|||||||+|.-+..+.+.|.  ..+|+|+|+.||++|.++.-
T Consensus        46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~   93 (270)
T KOG1541|consen   46 LPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVEREL   93 (270)
T ss_pred             CCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhh
Confidence            3433578999999999999999999998  99999999999999997543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.64  E-value=5.2e-08  Score=86.76  Aligned_cols=58  Identities=14%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus       163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l  220 (315)
T PRK03522        163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGL  220 (315)
T ss_pred             HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCC
Confidence            3344444433578999999999999999999886  999999999999999999987764

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.64  E-value=6.2e-08  Score=80.35  Aligned_cols=50  Identities=12%  Similarity=0.120  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ...++||||||+|.++..+++..++.+|+|+|+++.|++.|++++.+.+.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l   65 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL   65 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC
Confidence            35799999999999999999998777999999999999999999887654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.63  E-value=1.2e-07  Score=82.70  Aligned_cols=56  Identities=14%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ....+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++.
T Consensus        30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~   85 (272)
T PRK00274         30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA   85 (272)
T ss_pred             HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc
Confidence            345566666666788999999999999999999986  99999999999999999874

>PRK06202 hypothetical protein; Provisional

Probab=98.63  E-value=9.3e-08  Score=81.21  Aligned_cols=49  Identities=20%  Similarity=0.201  Sum_probs=41.0

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~----g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..++.+|||+|||+|.++..+++.    |++.+|+|+|+|++|++.|+++...
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~  110 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR  110 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc
Confidence            345789999999999998888753    5456999999999999999998654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.63  E-value=2.4e-07  Score=76.97  Aligned_cols=57  Identities=21%  Similarity=0.218  Sum_probs=48.2

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ....+...++.+|||+|||+|.++..+++. +...+|+++|+++.|++.|++++...+
T Consensus        32 ~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g   89 (198)
T PRK00377         32 ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG   89 (198)
T ss_pred             HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence            345566667899999999999999998875 444699999999999999999988765

>TIGR00740 methyltransferase, putative

Probab=98.62  E-value=1e-07  Score=81.29  Aligned_cols=49  Identities=16%  Similarity=0.301  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g--~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||+|||+|.++..+++..  ++.+|+|+|+|+.|++.|++++.+.+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~  103 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH  103 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence            47799999999999999998863  35699999999999999999987643

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.61  E-value=1.5e-07  Score=76.26  Aligned_cols=54  Identities=11%  Similarity=0.145  Sum_probs=46.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+.+...++.+|||+|||+|.++..+++++.  +|+|+|+++.|++.+++++..
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~   57 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA   57 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc
Confidence            344555555678999999999999999999865  999999999999999999864

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.61  E-value=1e-07  Score=68.35  Aligned_cols=42  Identities=38%  Similarity=0.657  Sum_probs=36.6

Q ss_pred             EEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          182 IDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       182 LDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ||+|||+|.++..+++. +.  +|+|+|+|++|++.++++....+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~--~v~~~D~~~~~~~~~~~~~~~~~   43 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGA--SVTGIDISEEMLEQARKRLKNEG   43 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTC--EEEEEES-HHHHHHHHHHTTTST
T ss_pred             CEecCcCCHHHHHHHhccCC--EEEEEeCCHHHHHHHHhcccccC
Confidence            89999999999999999 54  99999999999999999987653

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.61  E-value=9.9e-08  Score=82.22  Aligned_cols=49  Identities=27%  Similarity=0.434  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++.|. .+|+|+|+|+.|++.|++++..++.
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~  167 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV  167 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC
Confidence            488999999999999999888876 3699999999999999999987654

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.61  E-value=1.5e-07  Score=87.56  Aligned_cols=59  Identities=24%  Similarity=0.379  Sum_probs=50.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus       286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~  344 (443)
T PRK13168        286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNGL  344 (443)
T ss_pred             HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCC
Confidence            45555666655678999999999999999999886  999999999999999999886654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.60  E-value=2.5e-07  Score=77.51  Aligned_cols=58  Identities=16%  Similarity=0.171  Sum_probs=49.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+...++.+|||+|||+|.++..+++.+.  +|+++|++++|++.|++++++.+.
T Consensus        68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~  125 (212)
T PRK00312         68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGL  125 (212)
T ss_pred             HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCC
Confidence            4455566666789999999999999998888865  899999999999999999887543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.59  E-value=9.9e-08  Score=85.32  Aligned_cols=47  Identities=28%  Similarity=0.431  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .++.+|||||||+|.++..+++.|.  +|+|||+|++|++.|++++...
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~  176 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMD  176 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc
Confidence            3567999999999999999998877  9999999999999999887543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.58  E-value=1.2e-07  Score=78.99  Aligned_cols=51  Identities=25%  Similarity=0.406  Sum_probs=43.7

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhh
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~-~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      .+...++.+|||+|||+|.++..+++.+.. .+++|+|+++.+++.+++++.
T Consensus        34 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~   85 (223)
T TIGR01934        34 LIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE   85 (223)
T ss_pred             HhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence            333346789999999999999999988754 589999999999999999875

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00452 methyltransferase, putative

Probab=98.58  E-value=2.4e-07  Score=82.57  Aligned_cols=51  Identities=27%  Similarity=0.382  Sum_probs=42.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY  218 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~  218 (232)
                      ..+...+...++++|||||||+|.++..++..|+ ..|+|+|+|+.|+.+++
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~  161 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFE  161 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHH
Confidence            3455556666789999999999999999988886 37999999999998653

Known examples to date are restricted to the proteobacteria.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.57  E-value=2.5e-07  Score=83.41  Aligned_cols=61  Identities=21%  Similarity=0.353  Sum_probs=51.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ...+.+.++....++|||+|||+|.++..++++++..+|+++|+|+.|++.|+++++.++.
T Consensus       185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l  245 (342)
T PRK09489        185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL  245 (342)
T ss_pred             HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3555666665456799999999999999999997767999999999999999999887653

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.57  E-value=1.1e-07  Score=79.67  Aligned_cols=58  Identities=16%  Similarity=0.242  Sum_probs=50.9

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      -+...++.....+|.|+|||+|..+..|+++.+.+.|+|+|-|++||+.|++++.+..
T Consensus        21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~   78 (257)
T COG4106          21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDAT   78 (257)
T ss_pred             HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCc
Confidence            3555677777899999999999999999999888899999999999999999877543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.57  E-value=4.5e-07  Score=74.51  Aligned_cols=62  Identities=21%  Similarity=0.222  Sum_probs=55.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .....+..|.+.++.+++|||||||..+..++..++.++|+++|-++++++..++++++.+.
T Consensus        22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~   83 (187)
T COG2242          22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV   83 (187)
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC
Confidence            34455677888889999999999999999999888889999999999999999999999884

>TIGR03438 probable methyltransferase

Probab=98.57  E-value=2.4e-07  Score=82.00  Aligned_cols=47  Identities=19%  Similarity=0.248  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ++.+|||+|||+|..+..+.+... ..+|+|+|+|++||+.|++++.+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~  110 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA  110 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence            368999999999999999998853 24999999999999999999765

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.57  E-value=9.1e-08  Score=80.82  Aligned_cols=60  Identities=27%  Similarity=0.350  Sum_probs=47.3

Q ss_pred             CCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       158 g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +|--|+...++|.. +...+-.++||+|||||.....+.....  ++.|||||++||+.|.++
T Consensus       107 ~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         107 GYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK  166 (287)
T ss_pred             cCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc
Confidence            45555544444443 4444467999999999999999999987  999999999999999886

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=2.7e-07  Score=75.84  Aligned_cols=49  Identities=22%  Similarity=0.304  Sum_probs=44.7

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ....+..|+|+|||||.++...+-.|+ .+|+|+|+++++++.|+++..+
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~   90 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE   90 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh
Confidence            345678899999999999999999997 5999999999999999999987

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.56  E-value=2.3e-07  Score=82.95  Aligned_cols=52  Identities=29%  Similarity=0.446  Sum_probs=43.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      ..+...+....+++|||||||+|.++..+++.|+ ..|+|+|+|+.|+.+++.
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a  163 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEA  163 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH
Confidence            4455566656689999999999999999999986 369999999999986544

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.55  E-value=1.6e-07  Score=79.07  Aligned_cols=54  Identities=31%  Similarity=0.425  Sum_probs=45.5

Q ss_pred             HhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhc
Q 026825          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...+...++.+|||+|||+|.++..++..+. +.+++|+|+++.|++.+++++..
T Consensus        44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~   98 (239)
T PRK00216         44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD   98 (239)
T ss_pred             HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc
Confidence            3344444578999999999999999998874 46999999999999999999865

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.55  E-value=2.5e-07  Score=81.41  Aligned_cols=48  Identities=27%  Similarity=0.400  Sum_probs=43.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||+|||+|.++..+++.|. .+|+|+|+|+.|++.|++++..++
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n~  206 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELNQ  206 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcC
Confidence            478999999999999999888875 489999999999999999988654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=2.7e-07  Score=81.04  Aligned_cols=47  Identities=30%  Similarity=0.357  Sum_probs=44.7

Q ss_pred             eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       180 ~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +|||+|||+|.++..++..++.++|+|+|+|+.+++.|++++...+.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l  159 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL  159 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            79999999999999999998888999999999999999999998874

>PRK04266 fibrillarin; Provisional

Probab=98.53  E-value=4.8e-07  Score=77.06  Aligned_cols=53  Identities=11%  Similarity=0.158  Sum_probs=45.0

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .+...++.+|||+|||+|.++..+++....++|+|+|+++.|++.+.+++++.
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~  119 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER  119 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc
Confidence            36666789999999999999999999853459999999999999888777654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.52  E-value=4.1e-07  Score=79.95  Aligned_cols=50  Identities=22%  Similarity=0.095  Sum_probs=44.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++..++.+|+|+|+|+.|++.|++++...+.
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~  170 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL  170 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            45799999999999999999987666999999999999999999987653

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.52  E-value=4.5e-07  Score=78.56  Aligned_cols=56  Identities=14%  Similarity=0.195  Sum_probs=48.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++..
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~   73 (258)
T PRK14896         18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA   73 (258)
T ss_pred             HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc
Confidence            44555566655688999999999999999999976  999999999999999998865

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.51  E-value=3.5e-07  Score=84.09  Aligned_cols=49  Identities=22%  Similarity=0.166  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++...+
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g  299 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG  299 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            3579999999999999999887655699999999999999999987654

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.51  E-value=5.1e-09  Score=77.00  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=37.7

Q ss_pred             EEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       182 LDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ||||||+|.++..+.+..+..+++|+|+|+.|++.|++++.+...
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~   45 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN   45 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC
Confidence            799999999999999995556999999999999999999887664

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.50  E-value=4.1e-07  Score=83.24  Aligned_cols=55  Identities=27%  Similarity=0.359  Sum_probs=47.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +..+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|++|++.|++++.
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~--~V~giDlS~~~l~~A~~~~~  211 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV--SVVGVTISAEQQKLAQERCA  211 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc
Confidence            345556666667899999999999999999886 44  99999999999999999885

>PRK04148 hypothetical protein; Provisional

Probab=98.49  E-value=5.6e-07  Score=70.47  Aligned_cols=53  Identities=15%  Similarity=0.270  Sum_probs=44.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcCh-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~-~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +.+.+.++..++.++||||||+|. ++..|++.|.  +|+|+|+++.+++.|+++.
T Consensus         6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~   59 (134)
T PRK04148          6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLG   59 (134)
T ss_pred             HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhC
Confidence            445556665567899999999995 9999999998  9999999999999998874

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.49  E-value=4.7e-07  Score=71.43  Aligned_cols=40  Identities=35%  Similarity=0.648  Sum_probs=37.0

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ  216 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~  216 (232)
                      ..++++|||||||+|.++..+++.+.  +|+|+|+|+.|++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK   59 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh
Confidence            35689999999999999999999988  99999999999987

...

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.48  E-value=5.1e-07  Score=82.39  Aligned_cols=59  Identities=14%  Similarity=0.140  Sum_probs=50.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+....+..+||||||+|.++..+++..++..++|+|+++.|+..|.+++.+.+.
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL  171 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL  171 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            34444444456799999999999999999998778999999999999999999987664

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.47  E-value=2.4e-07  Score=75.79  Aligned_cols=50  Identities=22%  Similarity=0.367  Sum_probs=45.4

Q ss_pred             CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      .+|||+|||+|.++..|++.|..+.++|+|.|+.+++.|+..+...+..+
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n  118 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN  118 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc
Confidence            39999999999999999999998889999999999999998888776554

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.47  E-value=6.5e-07  Score=78.58  Aligned_cols=48  Identities=25%  Similarity=0.209  Sum_probs=43.7

Q ss_pred             CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+|||+|||+|.++..++...++.+|+|+|+|+.+++.|++++...+.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~  163 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL  163 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            699999999999999999987667999999999999999999886654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.46  E-value=8e-07  Score=76.66  Aligned_cols=56  Identities=11%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...+.+.+...++.+|||||||+|.++..+++.+.  .|+++|+++.|++.+++++..
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~   73 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL   73 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc
Confidence            44555566666688999999999999999999987  899999999999999998754

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK14967 putative methyltransferase; Provisional

Probab=98.46  E-value=4.4e-07  Score=76.76  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=43.2

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~~~   83 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALLAG   83 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHhC
Confidence            34578999999999999999988764 499999999999999999887544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.45  E-value=8.7e-07  Score=79.26  Aligned_cols=59  Identities=17%  Similarity=0.252  Sum_probs=48.3

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+.+...++.+|||+|||+|.++..+++... .+.|+|+|++++|++.|++++++.+.
T Consensus        71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~  130 (322)
T PRK13943         71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI  130 (322)
T ss_pred             HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            344455555688999999999999999998743 24799999999999999999887654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.45  E-value=3.9e-07  Score=84.46  Aligned_cols=59  Identities=19%  Similarity=0.223  Sum_probs=49.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ...+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.|++.|++++..++.
T Consensus       281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~  339 (431)
T TIGR00479       281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGI  339 (431)
T ss_pred             HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCC
Confidence            34455555555578999999999999999999876  999999999999999999987664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.44  E-value=5.8e-07  Score=75.69  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=50.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..+.+.+...++.+|||||||+|+++..++.. +..+.|++||+.+..++.|++++...+..
T Consensus        62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~  123 (209)
T PF01135_consen   62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID  123 (209)
T ss_dssp             HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC
Confidence            45666777788999999999999999999998 55557999999999999999999976643

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.44  E-value=9e-07  Score=75.39  Aligned_cols=59  Identities=24%  Similarity=0.134  Sum_probs=47.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+.. .+.+|||+|||+|.++..+++.....+++|+|+|+.|++.|++++...+.
T Consensus        78 ~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~  136 (251)
T TIGR03534        78 EAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL  136 (251)
T ss_pred             HHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            334444433 35699999999999999999986556999999999999999999876554

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.43  E-value=6.3e-07  Score=67.45  Aligned_cols=48  Identities=21%  Similarity=0.395  Sum_probs=43.4

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.|++++...+.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~   48 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL   48 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC
Confidence            4689999999999999999999 45999999999999999999987653

...

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.42  E-value=1.2e-06  Score=77.48  Aligned_cols=58  Identities=10%  Similarity=0.156  Sum_probs=49.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+.+.+...++.+|||||||+|.++..+.+.+.  +|+|+|+++.|++.+++++...+
T Consensus        25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~   82 (294)
T PTZ00338         25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSP   82 (294)
T ss_pred             HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcC
Confidence            34455556666688999999999999999999876  89999999999999999987543

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.42  E-value=4.6e-07  Score=82.65  Aligned_cols=58  Identities=12%  Similarity=0.166  Sum_probs=48.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+..++...++.+|||+|||+|.++..++..+.  +|+|||+++.+++.|+++++..+.
T Consensus       223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~~  280 (374)
T TIGR02085       223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLGL  280 (374)
T ss_pred             HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcCC
Confidence            3344444433467999999999999999998876  999999999999999999987764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PHA03411 putative methyltransferase; Provisional

Probab=98.41  E-value=6.2e-07  Score=78.21  Aligned_cols=64  Identities=16%  Similarity=0.200  Sum_probs=48.5

Q ss_pred             cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +.|+.|......+.  +.....++|||+|||+|.++..++.+....+|+|+|+++.|++.|++++.
T Consensus        46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~  109 (279)
T PHA03411         46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP  109 (279)
T ss_pred             eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc
Confidence            44777776653332  22334679999999999999888776433599999999999999998754

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.41  E-value=1.2e-06  Score=75.70  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=42.2

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.+|||+|||+|.++..+++.....+|+|+|+|+.|++.|++++...+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~  134 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG  134 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            458999999999999999887554599999999999999999987654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.41  E-value=1.1e-06  Score=78.23  Aligned_cols=49  Identities=22%  Similarity=0.108  Sum_probs=44.1

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++...+.
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l  182 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL  182 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            3689999999999999999987667999999999999999999987653

>PRK08317 hypothetical protein; Provisional

Probab=98.40  E-value=1.4e-06  Score=73.08  Aligned_cols=53  Identities=30%  Similarity=0.310  Sum_probs=45.3

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHH
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .+.+.+...++.+|||+|||+|.++..+++.. +.++|+|+|+|+.+++.|+++
T Consensus        10 ~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         10 RTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            34455666668899999999999999999874 456999999999999999998

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.40  E-value=9.4e-07  Score=76.74  Aligned_cols=52  Identities=19%  Similarity=0.296  Sum_probs=43.2

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..++.+|||+|||+|..+..+++. +..++|+|+|+|+.|++.|+++....+.
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~  127 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY  127 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC
Confidence            345889999999999888777665 5555899999999999999998876543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.39  E-value=1.4e-06  Score=75.37  Aligned_cols=54  Identities=22%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +...+...++.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++.
T Consensus       100 ~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328        100 ALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             HHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            333344445789999999999999999999766799999999999999999987

>PRK06922 hypothetical protein; Provisional

Probab=98.38  E-value=1e-06  Score=84.70  Aligned_cols=48  Identities=23%  Similarity=0.351  Sum_probs=43.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++.+|||+|||+|.++..+++..++.+|+|+|+|+.|++.|++++...
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~  465 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE  465 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc
Confidence            478999999999999999998877779999999999999999987543

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.38  E-value=1.3e-06  Score=74.03  Aligned_cols=75  Identities=23%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       146 ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++..|+..-.......+...+..+...+...++.+||+.|||.|..+..|+++|.  +|+|+|+|+.+++.+.+...
T Consensus         6 W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~   80 (218)
T PF05724_consen    6 WEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENN   80 (218)
T ss_dssp             HHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCT
T ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhc
Confidence            3445554332222223333344444445556678999999999999999999999  99999999999999965543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.37  E-value=4.6e-07  Score=75.11  Aligned_cols=54  Identities=17%  Similarity=0.182  Sum_probs=44.7

Q ss_pred             hhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       171 ~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..|+...-.++||+|||+|.++..|+.+..  +++++|+|+.+++.|+++++...+
T Consensus        37 aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~   90 (201)
T PF05401_consen   37 AALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPH   90 (201)
T ss_dssp             HHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SS
T ss_pred             HhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCC
Confidence            346776678999999999999999999986  999999999999999999987654

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.37  E-value=1.2e-06  Score=73.65  Aligned_cols=46  Identities=28%  Similarity=0.452  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      .+.+|||+|||+|.++..+++.++..+++|+|+|+.|++.+++++.
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~   79 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS   79 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence            3579999999999999999999876789999999999999999875

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.37  E-value=1.4e-06  Score=81.58  Aligned_cols=58  Identities=24%  Similarity=0.201  Sum_probs=47.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|+++...
T Consensus       254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~  311 (475)
T PLN02336        254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG  311 (475)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc
Confidence            34555565655567899999999999999888863 34999999999999999988753

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=1.7e-06  Score=75.97  Aligned_cols=65  Identities=22%  Similarity=0.380  Sum_probs=57.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +.-.+.+++.++...+++|||+|||.|.++..+++..+..+++-+|++..+++.|++++..++.-
T Consensus       144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~  208 (300)
T COG2813         144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE  208 (300)
T ss_pred             ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC
Confidence            44567888888887778999999999999999999998889999999999999999999976544

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.35  E-value=7.4e-07  Score=78.43  Aligned_cols=49  Identities=22%  Similarity=0.353  Sum_probs=42.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ  216 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~  216 (232)
                      ..+...++...+++|||||||+|+++..++++|+ ..|+|+|++.--+.+
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~Q  153 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQ  153 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHH
Confidence            5566677677899999999999999999999998 489999999887665

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=5.5e-07  Score=83.48  Aligned_cols=67  Identities=24%  Similarity=0.293  Sum_probs=58.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY  231 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~  231 (232)
                      +..+....++++..++.++||+-||.|.|+..++++..  +|+|+|+++++++.|+++++.++..|..|
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i~N~~f  345 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGIDNVEF  345 (432)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEE
Confidence            44566777778777788999999999999999998887  99999999999999999999998877555

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.33  E-value=2.5e-06  Score=71.34  Aligned_cols=50  Identities=12%  Similarity=0.103  Sum_probs=42.6

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||+|||+|.++..+..++. .+|+++|.++.+++.|+++++..+.
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~  101 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKA  101 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCC
Confidence            3467999999999999987655554 4999999999999999999987763

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.33  E-value=1.5e-06  Score=81.43  Aligned_cols=53  Identities=26%  Similarity=0.407  Sum_probs=44.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ..+.+.++..++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.+++..
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~   79 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESIN   79 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHh
Confidence            4455566655678999999999999999999876  9999999999999887654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.32  E-value=1.6e-06  Score=71.65  Aligned_cols=52  Identities=15%  Similarity=0.388  Sum_probs=41.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ++.+.+.++.  +.+|||+|||+|.++..+++... ..++|+|+|++|++.|+++
T Consensus         4 ~~~i~~~i~~--~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~   55 (194)
T TIGR02081         4 LESILNLIPP--GSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR   55 (194)
T ss_pred             HHHHHHhcCC--CCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc
Confidence            3455556654  77999999999999999876632 3889999999999998763

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.32  E-value=1.3e-06  Score=79.12  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=47.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +..+.+++... ++++||++||+|.++..+++...  +|+|||+++.|++.|++++..++.
T Consensus       187 ~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~  244 (353)
T TIGR02143       187 LEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNI  244 (353)
T ss_pred             HHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence            34444555432 34799999999999999998875  999999999999999999987764

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.32  E-value=1.5e-06  Score=71.75  Aligned_cols=52  Identities=13%  Similarity=0.402  Sum_probs=44.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +..+.+++++  +.+|||+|||.|.++..|.+. .+...+|||++++.+..|.++
T Consensus         4 ~~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r   55 (193)
T PF07021_consen    4 LQIIAEWIEP--GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR   55 (193)
T ss_pred             HHHHHHHcCC--CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc
Confidence            3566777776  899999999999999999885 235999999999999999876

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.7e-06  Score=71.26  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ...+.+.|...++.+|||||||+|+.+..|++...  +|+.+|..+...+.|++++...+..+
T Consensus        61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n  121 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN  121 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence            35667778888899999999999999999999987  99999999999999999999888644

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.30  E-value=1.8e-06  Score=74.19  Aligned_cols=57  Identities=16%  Similarity=0.257  Sum_probs=48.2

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +..+......++|||+|||+|.++..++.+-...+++|||+.+.|.++|+++++.++
T Consensus        36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~   92 (248)
T COG4123          36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP   92 (248)
T ss_pred             HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc
Confidence            334444445899999999999999999999555799999999999999999998744

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.30  E-value=2.7e-06  Score=72.44  Aligned_cols=47  Identities=17%  Similarity=0.257  Sum_probs=41.3

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +...++.+||+.|||.|..+..|+++|.  +|+|+|+|+.+++.+.+..
T Consensus        39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~   85 (226)
T PRK13256         39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQN   85 (226)
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHc
Confidence            3333568999999999999999999999  8999999999999987743

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.30  E-value=2.6e-06  Score=76.68  Aligned_cols=46  Identities=20%  Similarity=0.119  Sum_probs=40.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++.+|||||||+|.++..+++.....+|+|+|+|++|++.|+++..
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~  158 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP  158 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh
Confidence            4679999999999999988876433599999999999999999865

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.30  E-value=2.6e-06  Score=76.27  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=47.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.......++..|||+|||+|.++..++..+.  +++|+|+++.|++.|++++++.+.
T Consensus       173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~  229 (329)
T TIGR01177       173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI  229 (329)
T ss_pred             HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC
Confidence            344444445688999999999999999888776  999999999999999999987654

This family is found exclusively in the Archaea.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.29  E-value=8.5e-07  Score=80.28  Aligned_cols=65  Identities=25%  Similarity=0.365  Sum_probs=51.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY  231 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~  231 (232)
                      ..+..+.++++..++ .+||+-||.|.++..+++.+.  +|+|||+++.|++.|++++..++..+.+|
T Consensus       184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f  248 (352)
T PF05958_consen  184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEF  248 (352)
T ss_dssp             HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEE
T ss_pred             HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceE
Confidence            445667777776544 899999999999999999987  99999999999999999999887655443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.27  E-value=3.2e-06  Score=80.01  Aligned_cols=48  Identities=19%  Similarity=0.061  Sum_probs=42.7

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++...+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~  186 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE  186 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence            468999999999999999887555699999999999999999987655

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.27  E-value=3.7e-06  Score=71.19  Aligned_cols=57  Identities=21%  Similarity=0.407  Sum_probs=47.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+...+...++.+|||||||+|.++..+.+.+.  +|+|+|+++.+++.|++++...+
T Consensus        38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~   94 (233)
T PRK05134         38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG   94 (233)
T ss_pred             HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC
Confidence            4444555455688999999999999999998876  89999999999999999876543

>PHA03412 putative methyltransferase; Provisional

Probab=98.24  E-value=2.8e-06  Score=72.65  Aligned_cols=64  Identities=17%  Similarity=0.142  Sum_probs=49.0

Q ss_pred             cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHhh
Q 026825          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g---~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +.|+.|......+...  ...+.+|||+|||+|.++..+++..   ...+|+|+|+++.|++.|++++.
T Consensus        31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~   97 (241)
T PHA03412         31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP   97 (241)
T ss_pred             CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence            4578887654444322  2237899999999999999988752   23589999999999999998864

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.23  E-value=2.2e-06  Score=77.83  Aligned_cols=58  Identities=19%  Similarity=0.252  Sum_probs=47.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +..+.+.+... +.++||++||+|.++..+++...  +|+|||+++.|++.|++++..++.
T Consensus       196 ~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~  253 (362)
T PRK05031        196 LEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGI  253 (362)
T ss_pred             HHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCC
Confidence            44555555432 35799999999999999988865  999999999999999999987764

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.23  E-value=3.7e-06  Score=77.93  Aligned_cols=59  Identities=25%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+...++.+|||+|||+|..+..+++.+..++|+|+|+|+.|++.+++++.+.+.
T Consensus       235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~  293 (427)
T PRK10901        235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL  293 (427)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            33445666678999999999999999999986546999999999999999999987653

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.22  E-value=5e-06  Score=76.40  Aligned_cols=49  Identities=20%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++++|||+|||+|.++..++..+. .+|+++|+|+.|++.|++++..++.
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga-~~V~~VD~s~~al~~a~~N~~~Ngl  268 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELNKL  268 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC
Confidence            378999999999999887766554 4999999999999999999987764

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.20  E-value=5.7e-06  Score=73.18  Aligned_cols=59  Identities=17%  Similarity=0.013  Sum_probs=49.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+...+..+|||||||+|.++..++++.++.+++++|+ +.|++.+++++.+.+.
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl  197 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV  197 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc
Confidence            3445555555678999999999999999999987779999998 7899999999887654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.19  E-value=4.4e-06  Score=74.63  Aligned_cols=48  Identities=10%  Similarity=0.110  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .+.++||||||+|.+...++.+..+++++|+|+++.+++.|++++..+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N  161 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN  161 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            468999999999988888877644569999999999999999999987

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.19  E-value=6.8e-06  Score=68.92  Aligned_cols=48  Identities=27%  Similarity=0.480  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+|||+|||+|.++..+++.+.  +++|+|+++.|++.+++++...+.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~   92 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPL   92 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCC
Confidence            478999999999999999988876  899999999999999998876543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.18  E-value=4.6e-06  Score=70.09  Aligned_cols=36  Identities=19%  Similarity=0.124  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSE  211 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~  211 (232)
                      .++.+|||||||+|.++..+++.. ..+.|+|||+++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            347899999999999999998884 446999999996

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.17  E-value=6.7e-06  Score=71.47  Aligned_cols=56  Identities=14%  Similarity=0.099  Sum_probs=47.5

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+...++.+|||+|||+|..+..++... ..+.|+++|+++.|++.++++++..+..
T Consensus        66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~  122 (264)
T TIGR00446        66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL  122 (264)
T ss_pred             HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence            4555678999999999999999988873 2358999999999999999999887643

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.16  E-value=7.2e-06  Score=69.95  Aligned_cols=40  Identities=23%  Similarity=0.293  Sum_probs=36.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ  216 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~  216 (232)
                      .++..+||+|||+|.|+..+++.|. .+|+|+|++++|+..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHH
Confidence            4578999999999999999999975 489999999998876

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.15  E-value=5.5e-06  Score=81.34  Aligned_cols=49  Identities=16%  Similarity=0.090  Sum_probs=44.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++++|||+|||+|.++..++..|. .+|++||+|+.+++.|++++..++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~  586 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGL  586 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            378999999999999999999876 3799999999999999999987664

>PLN02672 methionine S-methyltransferase

Probab=98.15  E-value=5.1e-06  Score=84.27  Aligned_cols=48  Identities=23%  Similarity=0.302  Sum_probs=43.5

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++..++
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~  166 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNA  166 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            468999999999999999998766699999999999999999998653

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.13  E-value=7.5e-06  Score=75.87  Aligned_cols=60  Identities=27%  Similarity=0.305  Sum_probs=50.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+...++.+|||+|||+|..+..+++....++|+|+|+++.|++.+++++++.+.
T Consensus       228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~  287 (426)
T TIGR00563       228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL  287 (426)
T ss_pred             HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            344556677778999999999999999999874456999999999999999999987664

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.13  E-value=1.2e-05  Score=66.62  Aligned_cols=49  Identities=16%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.++||++||+|.++..+..+|. ..|++||.++.+++.+++++...+.
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~   97 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS   97 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            478999999999999999999987 4899999999999999999987653

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.12  E-value=6.2e-06  Score=70.22  Aligned_cols=42  Identities=31%  Similarity=0.234  Sum_probs=38.2

Q ss_pred             CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ..++|+|||+|..++.++....  +|+|+|+|+.||+.|++...
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~   76 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPP   76 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCC
Confidence            3899999999999999999977  99999999999999988754

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.11  E-value=7.2e-06  Score=71.08  Aligned_cols=62  Identities=24%  Similarity=0.153  Sum_probs=49.9

Q ss_pred             HHHHHhhcCC---CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~---~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+++.+.+..   ..+..|||+|||+|.++..+...-+++.|++||.|+.++..|.++++..+..
T Consensus       134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~  198 (328)
T KOG2904|consen  134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS  198 (328)
T ss_pred             HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc
Confidence            3444444443   3355799999999999999998877889999999999999999999876543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.10  E-value=7.8e-06  Score=71.17  Aligned_cols=45  Identities=18%  Similarity=0.184  Sum_probs=35.5

Q ss_pred             CCCeEEEEcCCcCh----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHh
Q 026825          177 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       177 ~~~~ILDiGCGtG~----~~~~la~~g~-----~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ++.+|||+|||+|.    ++..+++.+.     +.+|+|+|+|+.||+.|++.+
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            45799999999996    4445555432     358999999999999999864

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.09  E-value=1.1e-05  Score=75.24  Aligned_cols=58  Identities=17%  Similarity=0.112  Sum_probs=47.6

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ....+...++.+|||+|||+|..+..+++.. ..++|+|+|+|+.|++.+++++++.+.
T Consensus       242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~  300 (445)
T PRK14904        242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI  300 (445)
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC
Confidence            3345565678899999999999998888752 235999999999999999999987764

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.09  E-value=1e-05  Score=75.39  Aligned_cols=59  Identities=29%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+...++.+|||+|||+|..+..+++.. ..++|+|+|+++.+++.+++++...+.
T Consensus       241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~  300 (444)
T PRK14902        241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL  300 (444)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            34445666678899999999999999998873 456999999999999999999987664

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.08  E-value=1.2e-05  Score=71.14  Aligned_cols=57  Identities=16%  Similarity=0.158  Sum_probs=48.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhc
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+.+.+...+++.+||.+||.|.++..+++... +++|+|+|.++.|++.|++++.+
T Consensus         9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050          9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            3455566666788999999999999999999853 56999999999999999998864

>PRK11827 hypothetical protein; Provisional

Probab=98.08  E-value=2.2e-06  Score=57.64  Aligned_cols=45  Identities=16%  Similarity=0.268  Sum_probs=38.3

Q ss_pred             ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      +-+++|+||+|+++|....         ....+.|..|+..|++++|++.++.+
T Consensus         4 ~LLeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~d   48 (60)
T PRK11827          4 RLLEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLET   48 (60)
T ss_pred             HHHhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHH
Confidence            4578999999999998654         23579999999999999999999865

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.08  E-value=1.2e-05  Score=74.81  Aligned_cols=59  Identities=12%  Similarity=0.106  Sum_probs=49.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+...++.+|||+|||+|..+..++.. +..++|+++|+|+.|++.+++++++.+.
T Consensus       228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~  287 (431)
T PRK14903        228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL  287 (431)
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3334566667889999999999999988887 3345999999999999999999988764

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=2.5e-06  Score=56.88  Aligned_cols=45  Identities=27%  Similarity=0.489  Sum_probs=39.4

Q ss_pred             ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      +-+++|+||.|.++|....         .++.+.|+.|+..|++.+|++.++.+
T Consensus         4 ~LLeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~   48 (60)
T COG2835           4 RLLEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPD   48 (60)
T ss_pred             hhheeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCch
Confidence            5679999999999998775         35689999999999999999999854

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.07  E-value=1.2e-05  Score=74.81  Aligned_cols=60  Identities=28%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+...++.+|||+|||+|..+..+++. +..++|+++|+++.|++.+++++...|.
T Consensus       242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~  302 (434)
T PRK14901        242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL  302 (434)
T ss_pred             HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence            34444566677899999999999999999887 3345999999999999999999988764

>PRK04457 spermidine synthase; Provisional

Probab=98.07  E-value=1.5e-05  Score=69.31  Aligned_cols=48  Identities=8%  Similarity=0.093  Sum_probs=43.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++.+|||||||+|.++..+++..+..+|+++|+++++++.|++++...
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~  113 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP  113 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC
Confidence            468999999999999999998877679999999999999999998643

>PLN03075 nicotianamine synthase; Provisional

Probab=98.05  E-value=2.3e-05  Score=69.14  Aligned_cols=47  Identities=6%  Similarity=-0.013  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCCcChHHH--HHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSR--IFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~--~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ++++|||||||.|.++.  .++...++++++|+|++++|++.|++.+..
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~  171 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS  171 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh
Confidence            68999999999884433  344456777999999999999999999964

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.04  E-value=1.1e-05  Score=67.16  Aligned_cols=51  Identities=14%  Similarity=0.191  Sum_probs=44.5

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ...+||||||.|.++..+|...++..++|+|++...+..|.+++.+.+..|
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N   68 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN   68 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc
Confidence            349999999999999999999998999999999999999999998876644

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PTZ00146 fibrillarin; Provisional

Probab=98.04  E-value=1.4e-05  Score=70.41  Aligned_cols=49  Identities=14%  Similarity=0.172  Sum_probs=38.8

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHh
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +...++.+|||+|||+|.++..+++. +..+.|++||+|+.|++...+.+
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a  177 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA  177 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence            44466889999999999999999998 44569999999997654444443

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=5.3e-06  Score=77.26  Aligned_cols=67  Identities=13%  Similarity=0.238  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY  231 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~  231 (232)
                      +..+..+.+++....++.+||+.||||.++..+++...  +|+||++++.++.-|+++++.+|..|.+|
T Consensus       369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~F  435 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATF  435 (534)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceee
Confidence            34455666677776789999999999999999999877  99999999999999999999999888776

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.00  E-value=2.5e-05  Score=66.79  Aligned_cols=53  Identities=13%  Similarity=0.063  Sum_probs=45.0

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..+.++|||+|||+|.-+..++.. ..+++|+++|+++.+++.|++++++.+..
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~  119 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD  119 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            345789999999999988888776 44569999999999999999999987653

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.99  E-value=1.7e-05  Score=61.76  Aligned_cols=47  Identities=23%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       180 ~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+||+|||.|.++..+++.++.++|+++|+++.+.+.++++++.++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~   47 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL   47 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence            48999999999999999998866899999999999999999886643

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.93  E-value=2.8e-05  Score=63.90  Aligned_cols=39  Identities=18%  Similarity=0.192  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHH
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENM  213 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~m  213 (232)
                      ..++.+|||+|||+|.++..+++.. ..++|+|+|+|+.+
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~   69 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK   69 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence            3568899999999999999888874 34589999999964

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.93  E-value=2.9e-05  Score=69.34  Aligned_cols=49  Identities=24%  Similarity=0.392  Sum_probs=43.1

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+++.|||||||||.++.+.++.|+ .+|+|||-|.-+ +.|++-+..++.
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia-~~a~~iv~~N~~  107 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIA-DFARKIVKDNGL  107 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHH-HHHHHHHHhcCc
Confidence            4589999999999999999999997 699999999854 999988887654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=5.8e-05  Score=65.43  Aligned_cols=60  Identities=13%  Similarity=0.158  Sum_probs=51.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ....+.+.....++..|||||+|.|.++..|.+++.  +|+++++++.++...++++...++
T Consensus        18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n   77 (259)
T COG0030          18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDN   77 (259)
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccc
Confidence            345566666666689999999999999999999998  999999999999999999864433

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.89  E-value=4.7e-05  Score=59.92  Aligned_cols=49  Identities=22%  Similarity=0.287  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~-----~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+...|+|+|||.|+++..++.     . ++.+|+|||.++.+++.|.++.++.+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            5578999999999999999999     4 45699999999999999999988755

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=1.8e-05  Score=62.71  Aligned_cols=53  Identities=19%  Similarity=0.296  Sum_probs=43.8

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      -....++++++|+|||.|-++..++-.+. ..|+|+|+++++|+.+++++....
T Consensus        43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~-e~vlGfDIdpeALEIf~rNaeEfE   95 (185)
T KOG3420|consen   43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKN-ESVLGFDIDPEALEIFTRNAEEFE   95 (185)
T ss_pred             hhccccCcchhhhcCchhhhHHHhhcCCC-ceEEeeecCHHHHHHHhhchHHhh
Confidence            34446789999999999999966665554 499999999999999999987654

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=6.8e-05  Score=64.44  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=55.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ..++...+...++.+|||.|.|+|.++.+|+.. |+.++|+.+|+-++.++.|++++...+..+
T Consensus        83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d  146 (256)
T COG2519          83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD  146 (256)
T ss_pred             HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc
Confidence            356666777788999999999999999999975 777899999999999999999999876554

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.83  E-value=0.00011  Score=63.34  Aligned_cols=62  Identities=16%  Similarity=0.254  Sum_probs=50.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..++..++...++.+|||.|.|+|.++..|++. ++.++|+..|+.++.++.|+++++..+..
T Consensus        29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~   91 (247)
T PF08704_consen   29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD   91 (247)
T ss_dssp             HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC
Confidence            456677788888999999999999999999987 77789999999999999999999988764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00811 spermidine synthase; Provisional

Probab=97.83  E-value=5.5e-05  Score=66.49  Aligned_cols=47  Identities=13%  Similarity=0.216  Sum_probs=41.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+++|||||||+|..++.+.+.....+|++||+++.|++.|++++..
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~  122 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE  122 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH
Confidence            47899999999999999998874335999999999999999999864

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.80  E-value=6.3e-05  Score=53.32  Aligned_cols=41  Identities=22%  Similarity=0.337  Sum_probs=35.0

Q ss_pred             eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       180 ~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ++||+|||.|.++..+... ...+++++|+++.++..+++..
T Consensus         1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~   41 (107)
T cd02440           1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAA   41 (107)
T ss_pred             CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHH
Confidence            4899999999999999883 3359999999999999998543

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.75  E-value=9.3e-05  Score=63.10  Aligned_cols=55  Identities=9%  Similarity=0.057  Sum_probs=48.3

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.......+||||||.|.++..+|+..++..++|||+....+..|.+++.+.++
T Consensus        43 ~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l   97 (227)
T COG0220          43 LFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL   97 (227)
T ss_pred             HhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC
Confidence            3444224689999999999999999999999999999999999999999998775

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.75  E-value=5.6e-05  Score=67.96  Aligned_cols=45  Identities=24%  Similarity=0.378  Sum_probs=36.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++.+|||+|||-|.-+.-+...+. ..++|+|+|...|+.|++|..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~  106 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYK  106 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHH
Confidence            578999999999987777777655 499999999999999999994

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.68  E-value=0.00023  Score=62.94  Aligned_cols=83  Identities=19%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             hhhHHHHHHHHHHHH-----hcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-------CCCCeEEEEe
Q 026825          141 FMSFIYERGWRQNFV-----WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALD  208 (232)
Q Consensus       141 ~~s~~ye~~wr~~f~-----~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-------g~~~~VvGvD  208 (232)
                      .+...||........     .+.|+.|......+..++...++.+|||-+||+|.|+..+.+.       ....+++|+|
T Consensus         5 ~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~e   84 (311)
T PF02384_consen    5 ILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIE   84 (311)
T ss_dssp             HHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeec
Confidence            445666655444311     1358889988889999888777789999999999999888773       2334999999


Q ss_pred             CCHHHHHHHHHHhhc
Q 026825          209 YSENMLKQCYEFVQQ  223 (232)
Q Consensus       209 ~S~~ml~~A~~~~~~  223 (232)
                      +++.++..|+-++.-
T Consensus        85 i~~~~~~la~~nl~l   99 (311)
T PF02384_consen   85 IDPEAVALAKLNLLL   99 (311)
T ss_dssp             S-HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhhhhh
Confidence            999999999887643

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PLN02476 O-methyltransferase

Probab=97.67  E-value=0.00023  Score=62.43  Aligned_cols=54  Identities=15%  Similarity=0.040  Sum_probs=46.4

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ...+.++|||||+|+|..+..++.. +.+++|+.+|.++++++.|++++++.|..
T Consensus       115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~  169 (278)
T PLN02476        115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS  169 (278)
T ss_pred             HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            3345789999999999999999886 33568999999999999999999988754

>TIGR00417 speE spermidine synthase

Probab=97.63  E-value=0.00019  Score=62.55  Aligned_cols=48  Identities=15%  Similarity=0.149  Sum_probs=41.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .+++||+||||+|.++..+.+.....+|+++|+++++++.|++++...
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~  119 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL  119 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence            456999999999999999888764458999999999999999987643

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.62  E-value=0.00011  Score=67.24  Aligned_cols=49  Identities=14%  Similarity=0.101  Sum_probs=42.4

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.+|||++||+|.++..++......+|+++|+++.+++.++++++.++.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~  106 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL  106 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            4689999999999999998764334899999999999999999987654

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=97.61  E-value=2.7e-05  Score=53.91  Aligned_cols=47  Identities=30%  Similarity=0.565  Sum_probs=32.7

Q ss_pred             ccCCcccCCCCCCCcccccC-------------------CCccccccCCCceECCCCCcccccCCC
Q 026825           67 TSKNVLACPICYKPLTWIGD-------------------SSLSIESAAGSSLQCNTCKKTYSGVGT  113 (232)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~-------------------~~~~~~~~~~~~l~C~~C~~~y~~~~g  113 (232)
                      ..+++|+||.|.+||.+...                   +......+..+.+.|++|++.|++.+|
T Consensus         3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen    3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            56799999999999911100                   001113567889999999999998875

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.61  E-value=8.3e-05  Score=62.22  Aligned_cols=57  Identities=18%  Similarity=0.301  Sum_probs=43.2

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +..++.....+.+|+||||||..-.+..-. +...|+++|+++.|-+.|.+.+.+...
T Consensus        68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~  124 (252)
T KOG4300|consen   68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKP  124 (252)
T ss_pred             hHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccC
Confidence            334555555667899999999876665432 223999999999999999999887643

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.58  E-value=0.00024  Score=58.34  Aligned_cols=60  Identities=17%  Similarity=0.156  Sum_probs=45.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~---------VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.......++..+||--||+|.++.+.+..+.+..         ++|+|+++.+++.|++++...+.
T Consensus        18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~   86 (179)
T PF01170_consen   18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV   86 (179)
T ss_dssp             HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence            3344444445678999999999999999888866545         88999999999999999987664

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.56  E-value=0.00013  Score=62.30  Aligned_cols=48  Identities=15%  Similarity=0.215  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+..+|||||-.|.++..+++......|+|+||++..++.|++.+..
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            347899999999999999999995556899999999999999998753

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.54  E-value=0.00028  Score=61.25  Aligned_cols=59  Identities=20%  Similarity=0.310  Sum_probs=50.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+.+.+...++..|||+|.|.|.++..|.+.+.  +|+++|+++.+.+..++++...++
T Consensus        19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~~~~   77 (262)
T PF00398_consen   19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFASNPN   77 (262)
T ss_dssp             HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTTCSS
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhhccc
Confidence            45566666666789999999999999999999996  999999999999999998874433

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.53  E-value=0.0003  Score=58.89  Aligned_cols=50  Identities=26%  Similarity=0.282  Sum_probs=40.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++..|||+.||.|.|+..+++.+....|+++|+++.+++.+++++..++.
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv  150 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV  150 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC
Confidence            48999999999999999999955445999999999999999999987754

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.52  E-value=0.00025  Score=58.46  Aligned_cols=50  Identities=18%  Similarity=0.215  Sum_probs=41.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.++||+-||+|.++..+..+|+ .+|+.||.+...++..+++++..+.
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~   90 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL   90 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC
Confidence            3689999999999999999999997 5999999999999999999987764

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.50  E-value=0.00032  Score=58.92  Aligned_cols=50  Identities=6%  Similarity=-0.003  Sum_probs=43.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.++|||||+++|+-+..+++.- .+++|+.+|+++.+.+.|++.+++.+.
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~   95 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL   95 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC
Confidence            46899999999999999999873 357999999999999999999998764

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.50  E-value=0.00048  Score=58.35  Aligned_cols=56  Identities=9%  Similarity=-0.041  Sum_probs=49.1

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      +.....++|||||.+.|+-+..++..-+ +++++.+|+++++.+.|++++++.+..+
T Consensus        55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~  111 (219)
T COG4122          55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD  111 (219)
T ss_pred             HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc
Confidence            3345689999999999999999999855 7899999999999999999999988654

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.47  E-value=0.00047  Score=56.17  Aligned_cols=50  Identities=24%  Similarity=0.235  Sum_probs=39.1

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+.+|||+|||+|..+..++......+|+..|..+ .+..++.++..++
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~   92 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG   92 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc
Confidence            3468899999999999999999993335999999999 9999999988765

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.47  E-value=0.00037  Score=62.30  Aligned_cols=52  Identities=27%  Similarity=0.386  Sum_probs=44.5

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ....++.|||+|||+|.++.+.+..|. .+|++|+-|+ |.+.|++.++.+ ++.
T Consensus       174 sDF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N-~~~  225 (517)
T KOG1500|consen  174 SDFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASN-NLA  225 (517)
T ss_pred             cccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcC-Ccc
Confidence            345688999999999999999999987 5999999886 999999998876 444

>PLN02366 spermidine synthase

Probab=97.45  E-value=0.00034  Score=62.29  Aligned_cols=47  Identities=11%  Similarity=0.134  Sum_probs=41.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+++||+||||.|..++.+.+.....+|+.||+++.+++.|++++..
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~  137 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPD  137 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhh
Confidence            47899999999999999999874345899999999999999999865

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.44  E-value=0.00067  Score=58.98  Aligned_cols=57  Identities=16%  Similarity=0.185  Sum_probs=49.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+..+..++..|||+|-|||.++..+.+.|.  +|+++++++.|+....++.+...
T Consensus        48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp  104 (315)
T KOG0820|consen   48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTP  104 (315)
T ss_pred             HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCC
Confidence            3444445556789999999999999999999998  99999999999999999987654

>PRK01581 speE spermidine synthase; Validated

Probab=97.42  E-value=0.00029  Score=63.98  Aligned_cols=43  Identities=19%  Similarity=0.121  Sum_probs=38.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .+++||++|||+|..++.+.+.....+|++||++++|++.|++
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~  192 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN  192 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence            4679999999999999999887644699999999999999997

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.00069  Score=55.66  Aligned_cols=53  Identities=26%  Similarity=0.339  Sum_probs=44.8

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      |.......+||||||+|..+.+++.. +++..++++|+++.+++..++.+..++
T Consensus        39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~   92 (209)
T KOG3191|consen   39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR   92 (209)
T ss_pred             HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC
Confidence            44445789999999999999999888 667799999999999999888877544

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.34  E-value=0.00096  Score=58.79  Aligned_cols=50  Identities=24%  Similarity=0.174  Sum_probs=42.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+++|||+-|=||.|+..++..|+ .+|+.||.|..+++.|++++..++..
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~  172 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLD  172 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred             CCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            378999999999999999888886 48999999999999999999977643

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.31  E-value=0.00076  Score=61.88  Aligned_cols=69  Identities=23%  Similarity=0.173  Sum_probs=53.8

Q ss_pred             cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      +|++-.++......+.+.  .+++|||+-|=||.|+..++..|+ .+|++||.|...|+.|++++.-++...
T Consensus       199 TGfFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~  267 (393)
T COG1092         199 TGFFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDG  267 (393)
T ss_pred             ceeeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCc
Confidence            344444444333333332  389999999999999999999987 599999999999999999999887643

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.30  E-value=0.00054  Score=65.18  Aligned_cols=69  Identities=22%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             cCCCCcHHHHHHHHhhcCCC-------CCCeEEEEcCCcChHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHh
Q 026825          157 GGFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~-------~~~~ILDiGCGtG~~~~~la~~g~--------~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +.|+.|....+.+.+.+...       ...+|||.|||+|.++..+.+...        ...++|+|+++.++..|+.++
T Consensus         4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l   83 (524)
T TIGR02987         4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL   83 (524)
T ss_pred             cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence            34677766666666554221       346999999999999998877632        247999999999999999998


Q ss_pred             hccC
Q 026825          222 QQES  225 (232)
Q Consensus       222 ~~~~  225 (232)
                      ...+
T Consensus        84 ~~~~   87 (524)
T TIGR02987        84 GEFA   87 (524)
T ss_pred             hhcC
Confidence            7655

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.29  E-value=0.0011  Score=58.03  Aligned_cols=60  Identities=15%  Similarity=0.144  Sum_probs=45.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...++...+.+|||+|+|.|..+..+.+.. .-.+++++|.|+.|++.+++-+.+...
T Consensus        23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~   83 (274)
T PF09243_consen   23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN   83 (274)
T ss_pred             HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc
Confidence            444445555667899999999998777766652 234899999999999999998776543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.27  E-value=0.00062  Score=64.59  Aligned_cols=50  Identities=12%  Similarity=0.060  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ....+||||||.|.++..++...++..++|+|++...+..|.+++...+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l  396 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI  396 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999999999999999999999876654

>PRK03612 spermidine synthase; Provisional

Probab=97.25  E-value=0.00061  Score=64.86  Aligned_cols=44  Identities=18%  Similarity=0.086  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ++++|||+|||+|..++.+.+.....+|+++|++++|++.|+++
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~  340 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS  340 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC
Confidence            47899999999999999998875335999999999999999993

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.21  E-value=0.00032  Score=62.30  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=41.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++..+||+|||-|.-++..-+.|- +.++|+||++..+++|+++..+-
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm  163 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDM  163 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHH
Confidence            478899999999988888878776 49999999999999999998753

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.20  E-value=0.00067  Score=60.94  Aligned_cols=55  Identities=20%  Similarity=0.222  Sum_probs=48.0

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.......+|..|||==||||.++..+.-.|.  +++|.|++..|++-|+.++...+
T Consensus       189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~  243 (347)
T COG1041         189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG  243 (347)
T ss_pred             HHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC
Confidence            33333446688999999999999999999998  99999999999999999999876

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.07  E-value=0.0024  Score=55.17  Aligned_cols=54  Identities=13%  Similarity=0.050  Sum_probs=46.2

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ...+.++|||||+++|.-+..++.. ..+++|+.+|.++...+.|++++.+.|..
T Consensus        76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~  130 (247)
T PLN02589         76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA  130 (247)
T ss_pred             HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC
Confidence            3345789999999999999988876 44679999999999999999999988753

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.05  E-value=0.0047  Score=57.79  Aligned_cols=48  Identities=19%  Similarity=0.205  Sum_probs=37.4

Q ss_pred             CCeEEEEcCCcChHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g----~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +..|||||||+|.++....+.+    ...+|++|+-++.++...+++++.++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~  238 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG  238 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC
Confidence            5789999999999988776665    23599999999999988887766544

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.05  E-value=0.0031  Score=56.45  Aligned_cols=45  Identities=16%  Similarity=0.113  Sum_probs=36.0

Q ss_pred             CCeEEEEcCCcChHHH----HHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          178 GGNIIDASCGSGLFSR----IFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~----~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +..|+|+|||+|.-..    .+.+.+....+++||+|.++|+.+.+++.
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence            6689999999996544    34333333589999999999999999998

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.04  E-value=0.0026  Score=53.48  Aligned_cols=53  Identities=15%  Similarity=0.088  Sum_probs=36.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHh
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      .+.+.+...++...+|||||.|.....++-. +. .+++||++.+...+.|++..
T Consensus        33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~   86 (205)
T PF08123_consen   33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELL   86 (205)
T ss_dssp             HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHH
Confidence            3445566667899999999999888777655 44 36999999999888877644

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.03  E-value=0.0041  Score=51.38  Aligned_cols=60  Identities=22%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             HHHHHHhhcCC--CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          165 EFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       165 ~~~~l~~~l~~--~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+..++..  ..+.++||+-+|+|.++.....+|. ..++.||.+..++...+++++..+
T Consensus        29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~   90 (187)
T COG0742          29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG   90 (187)
T ss_pred             HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC
Confidence            34455556654  5789999999999999999999988 599999999999999999988766

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.00  E-value=0.0042  Score=55.20  Aligned_cols=59  Identities=15%  Similarity=0.085  Sum_probs=49.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++.+.+.|...+++.++|.=+|.|..+..+.+...+++|+|+|.++.+++.|++++...
T Consensus         9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~   67 (305)
T TIGR00006         9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF   67 (305)
T ss_pred             HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc
Confidence            34555667666789999999999999999998743479999999999999999998753

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.87  E-value=0.0056  Score=49.76  Aligned_cols=68  Identities=13%  Similarity=0.248  Sum_probs=56.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCCCCCc
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKE  230 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~  230 (232)
                      ....+.+.+.+....+..|||+|.|||-++..+.++|. +..+++++.|++......++....++++.+
T Consensus        34 s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gd  102 (194)
T COG3963          34 SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGD  102 (194)
T ss_pred             HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccc
Confidence            44456677777777788999999999999999999963 468999999999999999999887766543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.71  E-value=0.0056  Score=55.20  Aligned_cols=56  Identities=25%  Similarity=0.295  Sum_probs=47.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+....  |..|||.-+|.|.|+..++..|.. .|+++|+++.+++..++++..++.
T Consensus       181 Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v  236 (341)
T COG2520         181 RVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV  236 (341)
T ss_pred             HHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc
Confidence            34444444  899999999999999999999983 399999999999999999987654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0033  Score=52.83  Aligned_cols=50  Identities=18%  Similarity=0.321  Sum_probs=42.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh-CC-CCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS-GL-FSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~-g~-~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .++.++||+|.|+|+++..++.. +. +..++|||+-++.++.+++++.+.-
T Consensus        81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i  132 (237)
T KOG1661|consen   81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDI  132 (237)
T ss_pred             ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhc
Confidence            45999999999999999988866 33 2245999999999999999998764

>PHA01634 hypothetical protein

Probab=96.66  E-value=0.0074  Score=46.93  Aligned_cols=51  Identities=20%  Similarity=0.126  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      .+++|+|||.+.|.-++++.-+|+ ..|+++++++...+..++.++..++.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~nnI~D   78 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYFNICD   78 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhheeee
Confidence            589999999999999999999988 599999999999999999887665443

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.62  E-value=0.0046  Score=55.72  Aligned_cols=34  Identities=21%  Similarity=0.386  Sum_probs=31.1

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~  211 (232)
                      .++.++||+||++|.++..+.++|.  +|+|||..+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~  243 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP  243 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh
Confidence            4589999999999999999999998  999999665

>PRK11524 putative methyltransferase; Provisional

Probab=96.61  E-value=0.0085  Score=52.59  Aligned_cols=58  Identities=14%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ....+.+.+... .++..|||--+|+|..+....+.|.  +.+|+|++++-.+.|++|+..
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            444555555444 3689999999999999999999998  999999999999999999864

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.61  E-value=0.0042  Score=53.78  Aligned_cols=42  Identities=19%  Similarity=0.075  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ...++||||+|.|..+..++....  +|++.|.|..|....+++
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k  135 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK  135 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC
Confidence            467899999999999999999887  999999999997776664

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.58  E-value=0.0024  Score=54.71  Aligned_cols=45  Identities=20%  Similarity=0.202  Sum_probs=38.6

Q ss_pred             CeEEEEcCCcChHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHhhc
Q 026825          179 GNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       179 ~~ILDiGCGtG~~~~~la~~g~~--~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+||+||||.|.....+.+-.++  -.|++.|.|+.+++..+++...
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~  119 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY  119 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc
Confidence            48999999999888888887654  6899999999999998887654

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.57  E-value=0.0046  Score=53.26  Aligned_cols=58  Identities=14%  Similarity=0.294  Sum_probs=43.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+...++.  +.+|||||||.=-++..+.....+..++|+||+..+++...+.+...+
T Consensus        96 Y~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~  153 (251)
T PF07091_consen   96 YDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG  153 (251)
T ss_dssp             HHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC
Confidence            3444444333  789999999999999888877666699999999999999999877654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.56  E-value=0.0084  Score=49.60  Aligned_cols=55  Identities=16%  Similarity=0.183  Sum_probs=42.5

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      |....+.+.+.... ++..|||.-||+|..+.+..+.|.  +.+|+|+++...+.|++
T Consensus       177 P~~l~~~lI~~~t~-~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKASTN-PGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhhhc-cceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence            34555666655543 589999999999999999999998  99999999999999975

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.56  E-value=0.0063  Score=53.90  Aligned_cols=48  Identities=21%  Similarity=0.239  Sum_probs=32.9

Q ss_pred             CCeEEEEcCCcChHHHHHH--HhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          178 GGNIIDASCGSGLFSRIFA--KSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la--~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..++||||+|.-.+-..|.  ..+|  +++|.|+++..++.|++++.++.++
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N~~L  152 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERNPNL  152 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhcccc
Confidence            4689999999885533333  3366  9999999999999999999987444

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.51  E-value=0.0062  Score=45.83  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=29.5

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~  211 (232)
                      .+....+|||||+|.+...|...|.  .-+|+|.-.
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R~   90 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDARR   90 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhCCC--Ccccccccc
Confidence            3467899999999999999999999  889999744

; GO: 0008168 methyltransferase activity

>PRK13699 putative methylase; Provisional

Probab=96.47  E-value=0.014  Score=49.64  Aligned_cols=59  Identities=14%  Similarity=0.162  Sum_probs=48.9

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      |....+.+.+.... ++..|||--||+|..+....+.|.  +.+|+|+++.-.+.|.+++.+
T Consensus       149 P~~l~~~~i~~~s~-~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        149 PVTSLQPLIESFTH-PNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             cHHHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence            34555555554443 588999999999999999888888  999999999999999999865

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.46  E-value=0.0082  Score=51.06  Aligned_cols=51  Identities=18%  Similarity=0.184  Sum_probs=40.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .+.......+..+|||||.|.|.++..++++.++.+++..|+ +..++.+++
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~  141 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE  141 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc
Confidence            334444445567999999999999999999998889999999 888888887

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.42  E-value=0.011  Score=49.50  Aligned_cols=61  Identities=18%  Similarity=0.290  Sum_probs=47.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +++.+.+.++.. +.+|||||+|||....++++..+..+-.-.|+++..+..-+..+.+.+.
T Consensus        14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~   74 (204)
T PF06080_consen   14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL   74 (204)
T ss_pred             HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC
Confidence            356677777662 2269999999999999999998877788899999987777776665543

The function of this family is unknown.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.40  E-value=0.015  Score=54.67  Aligned_cols=55  Identities=15%  Similarity=0.056  Sum_probs=47.2

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ...++.+|||+++|.|.=+..++... ..+.|++.|+++..++..++++.+.|..+
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n  165 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN  165 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe
Confidence            55678999999999998888888873 34699999999999999999999877543

>PLN02823 spermine synthase

Probab=96.38  E-value=0.013  Score=52.79  Aligned_cols=47  Identities=15%  Similarity=0.188  Sum_probs=41.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+++||.||.|.|..++.+.+.....+|+.||+++++++.|++.+..
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~  149 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTV  149 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccc
Confidence            46799999999999999888865445899999999999999999864

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.38  E-value=0.011  Score=54.04  Aligned_cols=48  Identities=27%  Similarity=0.224  Sum_probs=41.9

Q ss_pred             CCeEEEEcCCcChHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~--g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +-+|||+.||+|..+..++..  |. .+|+++|+++.+++.++++++.++.
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga-~~Vv~nD~n~~Av~~i~~N~~~N~~   94 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGV-REVFANDINPKAVESIKNNVEYNSV   94 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            358999999999999999887  43 4999999999999999999987653

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.37  E-value=0.011  Score=50.19  Aligned_cols=66  Identities=24%  Similarity=0.214  Sum_probs=53.1

Q ss_pred             CCcHHHHHHHHhhcCC-CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          160 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       160 ~~~~~~~~~l~~~l~~-~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +.|+.+...+...... .....|+|.-||.|.....++..++  .|++||+++.-+..|+.+++--|..
T Consensus        76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~  142 (263)
T KOG2730|consen   76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVP  142 (263)
T ss_pred             eccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCC
Confidence            4456665555544322 2467899999999999999999999  9999999999999999999877654

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.35  E-value=0.018  Score=50.29  Aligned_cols=62  Identities=15%  Similarity=0.255  Sum_probs=55.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..++..+|...++.+|||-|.|+|.++.++++. ++-++++-.|+.+.-.+.|++.+++.+..
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~  156 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG  156 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC
Confidence            456777888888999999999999999999998 66779999999999999999999987743

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.35  E-value=0.0079  Score=50.16  Aligned_cols=44  Identities=20%  Similarity=0.215  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCcC----hHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHH
Q 026825          177 LGGNIIDASCGSG----LFSRIFAKS-----GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       177 ~~~~ILDiGCGtG----~~~~~la~~-----g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +.-+|+..||++|    .++..+.+.     ++..+|+|.|+|+.+|+.|++=
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G   83 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG   83 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence            4679999999999    344444551     2235999999999999999863

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.34  E-value=0.0036  Score=50.91  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSEN  212 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~  212 (232)
                      ++.++||+||++|.|+..+.+++ ..++|+|+|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            46899999999999999999997 3359999999875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.32  E-value=0.016  Score=57.14  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCC------------------------------------------CCeEEEEeCCHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGL------------------------------------------FSLVVALDYSENML  214 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~------------------------------------------~~~VvGvD~S~~ml  214 (232)
                      ++..++|.+||+|.+++..+..+.                                          ..+++|+|+++.|+
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            478999999999999988765310                                          12699999999999


Q ss_pred             HHHHHHhhccCC
Q 026825          215 KQCYEFVQQESN  226 (232)
Q Consensus       215 ~~A~~~~~~~~~  226 (232)
                      +.|++++...|.
T Consensus       270 ~~A~~N~~~~g~  281 (702)
T PRK11783        270 QAARKNARRAGV  281 (702)
T ss_pred             HHHHHHHHHcCC
Confidence            999999998775

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.13  E-value=0.0096  Score=43.88  Aligned_cols=41  Identities=29%  Similarity=0.531  Sum_probs=30.7

Q ss_pred             EEEEcCCcChHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhh
Q 026825          181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       181 ILDiGCGtG~~~~~la~~g~~-~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +||+|||+|... .+...... ..++|+|+++.|+..++....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE   93 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh
Confidence            999999999865 33333221 289999999999999666553

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.88  E-value=0.025  Score=51.66  Aligned_cols=63  Identities=11%  Similarity=0.002  Sum_probs=49.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC--------------------------------C-------eEEE
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------S-------LVVA  206 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~--------------------------------~-------~VvG  206 (232)
                      ...|...-.-.++..++|-=||+|.+++..+-.+.+                                .       .++|
T Consensus       180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G  259 (381)
T COG0116         180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG  259 (381)
T ss_pred             HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence            344444444455679999999999999998887741                                1       2779


Q ss_pred             EeCCHHHHHHHHHHhhccCCCC
Q 026825          207 LDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       207 vD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      +|+++.|++.|+.++.+.|..+
T Consensus       260 ~Did~r~i~~Ak~NA~~AGv~d  281 (381)
T COG0116         260 SDIDPRHIEGAKANARAAGVGD  281 (381)
T ss_pred             ecCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999887653

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=95.86  E-value=0.047  Score=45.08  Aligned_cols=48  Identities=15%  Similarity=0.076  Sum_probs=40.4

Q ss_pred             eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       180 ~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +++|||+|.|.=+..++=..++.+++.+|....-+...+.-....+..
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~   98 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS   98 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC
Confidence            899999999999999988888789999999999888877777766654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=95.85  E-value=0.046  Score=48.23  Aligned_cols=55  Identities=13%  Similarity=0.054  Sum_probs=45.5

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHhhccCCCCC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPK  229 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~--~~VvGvD~S~~ml~~A~~~~~~~~~~~~  229 (232)
                      ...+.+||||.||.|+.........+.  ..|.-.|.|+.-++..++.+++.|..+.
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i  189 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDI  189 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence            346789999999999877776666443  5899999999999999999998876554

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.83  E-value=0.027  Score=47.63  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=52.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +..+..+++.  +..+.||||--+++..++-+.+....+++.|++++.++.|.+++.+.++.
T Consensus         7 L~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~   66 (226)
T COG2384           7 LTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS   66 (226)
T ss_pred             HHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc
Confidence            4556666665  56699999999999999999998889999999999999999999987765

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=95.79  E-value=0.035  Score=49.05  Aligned_cols=63  Identities=14%  Similarity=0.080  Sum_probs=42.2

Q ss_pred             CCCCcHHHHHHHHhhcCC-CCCCeEEEEcCCcC----hHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHH
Q 026825          158 GFPGPEKEFELMKGYLKP-VLGGNIIDASCGSG----LFSRIFAKSG----LFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       158 g~~~~~~~~~~l~~~l~~-~~~~~ILDiGCGtG----~~~~~la~~g----~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      -|+.....++.+...+.. ...-+|+..||+||    .++..+.+.+    .+.+|+|+|+|+.+|+.|++-
T Consensus        95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611         95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            355555555555554422 22369999999999    3334444431    135899999999999999875

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=95.63  E-value=0.032  Score=47.20  Aligned_cols=54  Identities=22%  Similarity=0.254  Sum_probs=38.3

Q ss_pred             HhhcCCCCCCeEEEEcCCcChHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~g--~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..++....+-.+.|-.||.|+++-.+.-..  .=..|+|.|+++++|+.|++++.-
T Consensus        44 l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L   99 (246)
T PF11599_consen   44 LHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL   99 (246)
T ss_dssp             HCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred             HHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence            345555567799999999998877654431  113899999999999999999863

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.54  E-value=0.026  Score=50.26  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=44.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ..+.+.|...+++.+||.--|.|..+..+.+...+++|+|+|.++.+++.|++++...
T Consensus        10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~   67 (310)
T PF01795_consen   10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF   67 (310)
T ss_dssp             HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC
T ss_pred             HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc
Confidence            3455566677889999999999999999999866689999999999999999988754

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=95.50  E-value=0.026  Score=46.84  Aligned_cols=48  Identities=19%  Similarity=0.269  Sum_probs=41.5

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+.+.|+|.|+|.++...+....  +|++|+.++.-.+.|.+++.-.+..
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~   80 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDV   80 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCc
Confidence            47899999999999998888866  9999999999999999997654443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.47  E-value=0.017  Score=48.38  Aligned_cols=49  Identities=16%  Similarity=0.162  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +...+.|||||-|.++..|+...++..++|++|-...-+.-++++....
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR  108 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR  108 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence            3567999999999999999999999999999999998888888876544

>PRK00420 hypothetical protein; Validated

Probab=95.46  E-value=0.011  Score=44.93  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=25.8

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g  113 (232)
                      .-.||+||.||....          .+...|+.||..+....+
T Consensus        23 ~~~CP~Cg~pLf~lk----------~g~~~Cp~Cg~~~~v~~~   55 (112)
T PRK00420         23 SKHCPVCGLPLFELK----------DGEVVCPVHGKVYIVKSD   55 (112)
T ss_pred             cCCCCCCCCcceecC----------CCceECCCCCCeeeeccH
Confidence            368999999998632          368999999998776544

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=95.43  E-value=0.082  Score=44.73  Aligned_cols=51  Identities=14%  Similarity=0.003  Sum_probs=42.7

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      +.+++|||.|.|.=+..++=..++.+|+-+|....-+...++-..+.+.-+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n  118 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN  118 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC
Confidence            589999999999999998877777799999999988777777776666543

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=95.42  E-value=0.084  Score=46.41  Aligned_cols=59  Identities=24%  Similarity=0.167  Sum_probs=49.5

Q ss_pred             HhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ...|.+.++..|||+.+|.|.-+..++.... .+.|++.|+++.-+...++++.+.|..+
T Consensus        78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~  137 (283)
T PF01189_consen   78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN  137 (283)
T ss_dssp             HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS
T ss_pred             cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce
Confidence            3456677889999999999988888888843 5799999999999999999999887654

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.29  E-value=0.058  Score=45.27  Aligned_cols=36  Identities=28%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSE  211 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~  211 (232)
                      .++..|+|+|+..|.++..+++. +....|+|+|+-+
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            45899999999999999999888 4445699999976

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.28  E-value=0.036  Score=47.49  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=35.6

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ  216 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~  216 (232)
                      .++..+||+|..||.|+..+.++|+ .+|+|+|...+.|..
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~  117 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHW  117 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCH
Confidence            4689999999999999999999987 599999999876654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=95.16  E-value=0.021  Score=47.63  Aligned_cols=56  Identities=23%  Similarity=0.264  Sum_probs=45.9

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +...-+...+++|||+|.|+|..+...++.|. ..|+..|+.+..+...+-+++.++
T Consensus        71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~ang  126 (218)
T COG3897          71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANG  126 (218)
T ss_pred             HhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhcc
Confidence            33333345689999999999999999999987 599999999988888888877665

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.16  E-value=0.085  Score=46.48  Aligned_cols=48  Identities=10%  Similarity=0.124  Sum_probs=44.2

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .++||-||-|.|..++.+.+.....+++.|||++..++.|++.+....
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~  124 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS  124 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcc
Confidence            369999999999999999999866699999999999999999998765

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.16  E-value=0.036  Score=51.41  Aligned_cols=49  Identities=18%  Similarity=0.251  Sum_probs=43.9

Q ss_pred             CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ..+||||.|||.++....+.|.+ .|++++.=..|.+.|++-..++|-.+
T Consensus        68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~Sd  116 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSD  116 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCcc
Confidence            46999999999999999999875 79999999999999999988877544

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=95.07  E-value=0.13  Score=48.65  Aligned_cols=87  Identities=21%  Similarity=0.164  Sum_probs=68.2

Q ss_pred             chhhHHHHHHHHHHHHh-----cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC----CCeEEEEeCC
Q 026825          140 PFMSFIYERGWRQNFVW-----GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYS  210 (232)
Q Consensus       140 ~~~s~~ye~~wr~~f~~-----~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~----~~~VvGvD~S  210 (232)
                      ..+...||...+.....     +.|+.|....+.+.+.+.+.+..+|+|-.||+|.++....+...    +..++|.|+.
T Consensus       144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~  223 (489)
T COG0286         144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN  223 (489)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence            46677787666654332     34899999999999988876778999999999988877666631    2579999999


Q ss_pred             HHHHHHHHHHhhccCC
Q 026825          211 ENMLKQCYEFVQQESN  226 (232)
Q Consensus       211 ~~ml~~A~~~~~~~~~  226 (232)
                      +.+.+.|+.++--++.
T Consensus       224 ~~t~~l~~mN~~lhgi  239 (489)
T COG0286         224 DTTYRLAKMNLILHGI  239 (489)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            9999999999876654

>PRK10742 putative methyltransferase; Provisional

Probab=94.92  E-value=0.1  Score=45.07  Aligned_cols=55  Identities=15%  Similarity=0.074  Sum_probs=46.1

Q ss_pred             HHHhhcCCCCCC--eEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          168 LMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       168 ~l~~~l~~~~~~--~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .+.+.+...++.  +|||+-+|+|..+..++.+|.  +|+++|-++.+....++.+...
T Consensus        77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra  133 (250)
T PRK10742         77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARG  133 (250)
T ss_pred             HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHh
Confidence            445555544555  899999999999999999998  8999999999999988888763

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=94.87  E-value=0.061  Score=46.34  Aligned_cols=48  Identities=8%  Similarity=0.115  Sum_probs=40.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .+++||-||-|.|..++.+.+.....+|+.||+++.+++.|++.+...
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~  123 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEF  123 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHH
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhh
Confidence            589999999999999999988864459999999999999999998753

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=94.83  E-value=0.047  Score=45.31  Aligned_cols=35  Identities=14%  Similarity=0.294  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYS  210 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S  210 (232)
                      .++.+|||+||..|.++....++ ++++.|.|||+=
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            35899999999999999988887 588899999973

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=94.74  E-value=0.011  Score=49.88  Aligned_cols=43  Identities=19%  Similarity=0.057  Sum_probs=38.8

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ..+.++||+|+|.|.++..++....  +|++.++|..|..+.+++
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK  153 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc
Confidence            3468999999999999999999887  999999999999988775

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.54  E-value=0.14  Score=44.88  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             CCeEEEEcCCcC----hHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHH
Q 026825          178 GGNIIDASCGSG----LFSRIFAKSG-----LFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       178 ~~~ILDiGCGtG----~~~~~la~~g-----~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .-+|+-+||+||    .++..+.+.+     +..+|+|.|+|..+|+.|++
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            679999999999    3444444544     24699999999999999985

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.42  E-value=0.094  Score=41.99  Aligned_cols=62  Identities=16%  Similarity=0.229  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+..+.+++.+...+.++.+|+|.|.|++....++.|. -..+|+++++=.+..++-..-..+
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~-~~a~GvELNpwLVaysrl~a~R~g  119 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL-RPAVGVELNPWLVAYSRLHAWRAG  119 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC-CcCCceeccHHHHHHHHHHHHHHh
Confidence            44567778888776778999999999999999999984 389999999988888776654443

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=94.39  E-value=0.18  Score=45.87  Aligned_cols=60  Identities=23%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~--~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ....|.+.++.+|||+.++.|.=+..++....+  ..|+++|.|+.-++..++++++.|..+
T Consensus       148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n  209 (355)
T COG0144         148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN  209 (355)
T ss_pred             HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence            344677888999999999999888888888653  357999999999999999999888664

>PRK00536 speE spermidine synthase; Provisional

Probab=94.36  E-value=0.1  Score=45.44  Aligned_cols=46  Identities=11%  Similarity=-0.019  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+++||=||-|.|..++.+.+...  +|+-||+++.+++.|++.+..
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~  116 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPH  116 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHH
Confidence            3579999999999999999999864  999999999999999997765

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=94.29  E-value=0.025  Score=34.23  Aligned_cols=35  Identities=26%  Similarity=0.733  Sum_probs=24.0

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      ...||.|+..+...++. +.   .....++|+.|++.|.
T Consensus         2 ~i~CP~C~~~f~v~~~~-l~---~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDDK-LP---AGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EEECCCCCceEEcCHHH-cc---cCCcEEECCCCCcEee
Confidence            36799999977655421 11   2345799999998874

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=94.27  E-value=0.066  Score=45.31  Aligned_cols=46  Identities=17%  Similarity=0.212  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...+.||.|+|.|+.+..+.-.-. .+|--||+.+..++.|++++..
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~  100 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGK  100 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC
T ss_pred             CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcc
Confidence            467999999999999986644433 3999999999999999998876

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=94.05  E-value=0.039  Score=36.28  Aligned_cols=28  Identities=25%  Similarity=0.585  Sum_probs=22.9

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      -.||+|+.++...+           ..+.|+.|+..|-.
T Consensus         6 ~~C~~Cg~~~~~~d-----------DiVvCp~CgapyHR   33 (54)
T PF14446_consen    6 CKCPVCGKKFKDGD-----------DIVVCPECGAPYHR   33 (54)
T ss_pred             ccChhhCCcccCCC-----------CEEECCCCCCcccH
Confidence            47999999998665           48999999998743

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.03  E-value=0.36  Score=42.88  Aligned_cols=60  Identities=18%  Similarity=0.231  Sum_probs=50.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +......|...+++..||.--|.|..+..+.+... .++++|+|.++.+++.|++++...+
T Consensus        12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~   72 (314)
T COG0275          12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD   72 (314)
T ss_pred             HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence            34455677778899999999999999999988854 3579999999999999999997643

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=93.84  E-value=0.22  Score=43.55  Aligned_cols=42  Identities=21%  Similarity=0.156  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ...+||--|||.|+++..++.+|.  .+.|.|.|--|+-..+=-
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fi   97 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFI   97 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHH
Confidence            457999999999999999999999  999999999997655443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.82  E-value=0.09  Score=49.50  Aligned_cols=53  Identities=13%  Similarity=0.205  Sum_probs=35.5

Q ss_pred             HHHHHhhcCC----CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHH
Q 026825          166 FELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEF  220 (232)
Q Consensus       166 ~~~l~~~l~~----~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGv---D~S~~ml~~A~~~  220 (232)
                      ++.|.+.++.    ..-..+||+|||+|.|+.+|.+++-  .++.+   |..+..++.|-++
T Consensus       102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR  161 (506)
T PF03141_consen  102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER  161 (506)
T ss_pred             HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc
Confidence            3445555443    2335799999999999999999975  44443   4455566666655

; GO: 0008168 methyltransferase activity

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=93.61  E-value=0.041  Score=32.73  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=15.9

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (232)
                      .||.||++|...-   ...+  ....+.|+.||.+
T Consensus         2 fC~~CG~~l~~~i---p~gd--~r~R~vC~~Cg~I   31 (34)
T PF14803_consen    2 FCPQCGGPLERRI---PEGD--DRERLVCPACGFI   31 (34)
T ss_dssp             B-TTT--B-EEE-----TT---SS-EEEETTTTEE
T ss_pred             ccccccChhhhhc---CCCC--CccceECCCCCCE
Confidence            5999999987542   1111  3457899999876

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.48  E-value=0.31  Score=41.60  Aligned_cols=55  Identities=13%  Similarity=0.044  Sum_probs=45.4

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      .....+++||||.=||+-+..++.. -.+++|+++|++++..+.+.+..+..+..+
T Consensus        70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~  125 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDH  125 (237)
T ss_pred             HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccc
Confidence            3344789999999999888888877 335799999999999999999888776543

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.47  E-value=0.055  Score=33.70  Aligned_cols=29  Identities=21%  Similarity=0.491  Sum_probs=19.9

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      +.||.|++.....+        ...+.+.|+.||.+-
T Consensus         1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl   29 (43)
T PF08271_consen    1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVL   29 (43)
T ss_dssp             ESBTTTSSSEEEEE--------TTTTEEEETTT-BBE
T ss_pred             CCCcCCcCCceEEc--------CCCCeEECCCCCCEe
Confidence            47999999653222        245788999998874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=93.47  E-value=0.33  Score=41.31  Aligned_cols=51  Identities=14%  Similarity=0.239  Sum_probs=37.9

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      +...++.+||-+|.++|.....+++- +..+.|+||++|+.+.+..-.-+++
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~  120 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK  120 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc
Confidence            44567899999999999999999888 6678999999999665554444443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=93.43  E-value=0.21  Score=42.93  Aligned_cols=42  Identities=24%  Similarity=0.439  Sum_probs=38.0

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ...++|||||-|...+.+...+- .+++-+|-|-.|++.|+.-
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~  114 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDA  114 (325)
T ss_pred             CcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhcc
Confidence            56899999999999999999875 4899999999999999875

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=93.39  E-value=0.23  Score=41.94  Aligned_cols=65  Identities=23%  Similarity=0.377  Sum_probs=34.5

Q ss_pred             cCchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCCCC-CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeC
Q 026825          138 RMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDY  209 (232)
Q Consensus       138 ~~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~~~-~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~  209 (232)
                      ++|..-..|+.++++...  .+  |..-.+.+.+++...+ ...|-|+|||.+.++..+... .  +|...|+
T Consensus        36 ~dP~~F~~YH~Gfr~Qv~--~W--P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDL  101 (219)
T PF05148_consen   36 EDPELFDIYHEGFRQQVK--KW--PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDL  101 (219)
T ss_dssp             H-HHHHHHHHHHHHHHHC--TS--SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEES
T ss_pred             hCHHHHHHHHHHHHHHHh--cC--CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeec
Confidence            345556688888887652  22  2233455666665433 569999999999999776532 2  4555554

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=93.35  E-value=0.046  Score=31.86  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=16.6

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      -.||.||++.....         .....+|+.|+..+
T Consensus         4 rfC~~CG~~t~~~~---------~g~~r~C~~Cg~~~   31 (32)
T PF09297_consen    4 RFCGRCGAPTKPAP---------GGWARRCPSCGHEH   31 (32)
T ss_dssp             SB-TTT--BEEE-S---------SSS-EEESSSS-EE
T ss_pred             cccCcCCccccCCC---------CcCEeECCCCcCEe
Confidence            46999999887664         24578999998763

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=93.24  E-value=0.072  Score=35.11  Aligned_cols=32  Identities=19%  Similarity=0.487  Sum_probs=24.2

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      +.||.|+..+...++       .....+.|+.||..+-.
T Consensus         3 ~~CP~CG~~iev~~~-------~~GeiV~Cp~CGaeleV   34 (54)
T TIGR01206         3 FECPDCGAEIELENP-------ELGELVICDECGAELEV   34 (54)
T ss_pred             cCCCCCCCEEecCCC-------ccCCEEeCCCCCCEEEE
Confidence            589999998776542       12347899999998765

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=93.04  E-value=0.094  Score=30.95  Aligned_cols=31  Identities=16%  Similarity=0.274  Sum_probs=24.0

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      ++-.|+.|++++....         ..+.+.|..|+..++
T Consensus         2 ~~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~   32 (33)
T PF08792_consen    2 NLKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP   32 (33)
T ss_pred             CceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence            4568999999877622         247899999999875

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=92.95  E-value=0.066  Score=41.64  Aligned_cols=28  Identities=25%  Similarity=0.497  Sum_probs=22.1

Q ss_pred             CCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (232)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (232)
                      +-..-||.||.||....           |-+.||.|+..
T Consensus        26 ML~~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~   53 (131)
T COG1645          26 MLAKHCPKCGTPLFRKD-----------GEVFCPVCGYR   53 (131)
T ss_pred             HHHhhCcccCCcceeeC-----------CeEECCCCCce
Confidence            34457999999999743           78999999943

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=92.70  E-value=0.069  Score=40.58  Aligned_cols=22  Identities=32%  Similarity=0.848  Sum_probs=19.1

Q ss_pred             CCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        74 CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      ||+|+++|...             .+.|++|+...
T Consensus         1 CPvCg~~l~vt-------------~l~C~~C~t~i   22 (113)
T PF09862_consen    1 CPVCGGELVVT-------------RLKCPSCGTEI   22 (113)
T ss_pred             CCCCCCceEEE-------------EEEcCCCCCEE
Confidence            99999999865             68999998875

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.41  E-value=0.41  Score=43.83  Aligned_cols=44  Identities=18%  Similarity=0.271  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .+-..++|+|.|.|.+++++.-. .+-.|+|||-|....+.|++.
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~-y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLG-YGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhc-cCceEEEeccchHHHHHHHHH
Confidence            44578999999999999988765 234999999998777666543

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=92.03  E-value=0.092  Score=31.57  Aligned_cols=34  Identities=18%  Similarity=0.689  Sum_probs=22.9

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      .+.||.|+......+.. +.   .....++|+.|++.|
T Consensus         2 ~i~Cp~C~~~y~i~d~~-ip---~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    2 IITCPNCQAKYEIDDEK-IP---PKGRKVRCSKCGHVF   35 (36)
T ss_pred             EEECCCCCCEEeCCHHH-CC---CCCcEEECCCCCCEe
Confidence            36899999976655421 11   123479999999876

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=91.67  E-value=0.17  Score=31.90  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=23.3

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      ..+.||.||..+.....         ...++|+.||.....
T Consensus         2 ~~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~~~   33 (46)
T PRK00398          2 AEYKCARCGREVELDEY---------GTGVRCPYCGYRILF   33 (46)
T ss_pred             CEEECCCCCCEEEECCC---------CCceECCCCCCeEEE
Confidence            35789999998776542         127899999986543

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=91.57  E-value=0.21  Score=32.06  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g  113 (232)
                      .||.||+.|...+.       .....+.|+.||..+.....
T Consensus         2 FCp~Cg~~l~~~~~-------~~~~~~vC~~Cg~~~~~~~~   35 (52)
T smart00661        2 FCPKCGNMLIPKEG-------KEKRRFVCRKCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCCccccccC-------CCCCEEECCcCCCeEECCCc
Confidence            59999997765532       01137899999988766543

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=91.48  E-value=0.1  Score=31.39  Aligned_cols=34  Identities=21%  Similarity=0.619  Sum_probs=22.1

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      +.||.|+.......+...    .....++|+.|+..+.
T Consensus         3 ~~CP~C~~~~~v~~~~~~----~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLG----ANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHcC----CCCCEEECCCCCCEEE
Confidence            689999997665432110    1123689999998753

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=91.40  E-value=0.11  Score=30.04  Aligned_cols=26  Identities=31%  Similarity=0.837  Sum_probs=14.4

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      .||.|++.....+          ...+.|+.|++.+
T Consensus         4 ~Cp~C~se~~y~D----------~~~~vCp~C~~ew   29 (30)
T PF08274_consen    4 KCPLCGSEYTYED----------GELLVCPECGHEW   29 (30)
T ss_dssp             --TTT-----EE-----------SSSEEETTTTEEE
T ss_pred             CCCCCCCcceecc----------CCEEeCCcccccC
Confidence            6999999766543          4689999998764

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=91.32  E-value=0.11  Score=36.05  Aligned_cols=28  Identities=36%  Similarity=1.018  Sum_probs=17.5

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      +.||.|+.+|.+.+           +.++|..|+..|..
T Consensus         2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~   29 (70)
T PF07191_consen    2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK   29 (70)
T ss_dssp             -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred             CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence            57999999988775           46788888776654

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=91.21  E-value=0.1  Score=42.16  Aligned_cols=40  Identities=20%  Similarity=0.466  Sum_probs=25.0

Q ss_pred             CCcccCCCCCCCcccccCCCc------cccccCCCceECCCCCccc
Q 026825           69 KNVLACPICYKPLTWIGDSSL------SIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~------~~~~~~~~~l~C~~C~~~y  108 (232)
                      .+.-+||.|+++|.......+      .+-......++|++||+.|
T Consensus        95 ~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY  140 (165)
T COG1656          95 PEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY  140 (165)
T ss_pred             cccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence            357799999998765432110      0112223467899999995

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=91.08  E-value=0.18  Score=36.38  Aligned_cols=32  Identities=22%  Similarity=0.564  Sum_probs=24.2

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      +...||.|+.+-...         +..+++.|..|+..|..
T Consensus        34 ~~~~Cp~C~~~~VkR---------~a~GIW~C~kCg~~fAG   65 (89)
T COG1997          34 AKHVCPFCGRTTVKR---------IATGIWKCRKCGAKFAG   65 (89)
T ss_pred             cCCcCCCCCCcceee---------eccCeEEcCCCCCeecc
Confidence            568999999973222         34589999999998754

>PF14353 CpXC: CpXC protein

Probab=91.06  E-value=0.12  Score=39.83  Aligned_cols=41  Identities=17%  Similarity=0.399  Sum_probs=24.3

Q ss_pred             ccCCCCCCCcccccCCCcccc-------ccCC---CceECCCCCcccccCC
Q 026825           72 LACPICYKPLTWIGDSSLSIE-------SAAG---SSLQCNTCKKTYSGVG  112 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~-------~~~~---~~l~C~~C~~~y~~~~  112 (232)
                      +.||.|++++...-...++..       .+-.   ..+.|++||..+...-
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~   52 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEY   52 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCC
Confidence            679999996544332222211       1111   2579999999976643

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.96  E-value=0.13  Score=39.01  Aligned_cols=26  Identities=12%  Similarity=0.133  Sum_probs=23.4

Q ss_pred             cCCCceECCCCCcccccCCCcccccc
Q 026825           94 AAGSSLQCNTCKKTYSGVGTHFDMTA  119 (232)
Q Consensus        94 ~~~~~l~C~~C~~~y~~~~g~~d~~~  119 (232)
                      +..+.+.|++||+.|++.+|+++.+.
T Consensus        94 v~EG~l~CpetG~vfpI~~GIPNMLL  119 (124)
T KOG1088|consen   94 VIEGELVCPETGRVFPISDGIPNMLL  119 (124)
T ss_pred             hccceEecCCCCcEeecccCCccccc
Confidence            46789999999999999999999874

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=90.87  E-value=0.19  Score=32.55  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      ..-.||.|++.+...          ..+.+.|..||..+
T Consensus        19 ~~~fCP~Cg~~~m~~----------~~~r~~C~~Cgyt~   47 (50)
T PRK00432         19 KNKFCPRCGSGFMAE----------HLDRWHCGKCGYTE   47 (50)
T ss_pred             ccCcCcCCCcchhec----------cCCcEECCCcCCEE
Confidence            344899999963222          13689999999775

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=90.81  E-value=0.13  Score=30.74  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~  111 (232)
                      ..||.|++-|...++        ......|++|+..+++.
T Consensus         2 ~FCp~C~nlL~p~~~--------~~~~~~C~~C~Y~~~~~   33 (35)
T PF02150_consen    2 RFCPECGNLLYPKED--------KEKRVACRTCGYEEPIS   33 (35)
T ss_dssp             -BETTTTSBEEEEEE--------TTTTEEESSSS-EEE-S
T ss_pred             eeCCCCCccceEcCC--------CccCcCCCCCCCccCCC
Confidence            469999998876553        12222899999887654

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=90.81  E-value=0.16  Score=28.26  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=17.7

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      .||.|+.....             ....|+.||..|.
T Consensus         2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPE-------------SAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence            59999986543             3568999998764

Several members are annotated as putative helicases.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=90.78  E-value=0.29  Score=43.49  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=41.8

Q ss_pred             CCeEEEEcCCcChHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~-~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +..|+|+-+|.|+|+. .+...|+ +.|+++|.++..++..++.+..++
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~  242 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANN  242 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcc
Confidence            5899999999999999 7777777 599999999999999999988654

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=90.74  E-value=0.35  Score=41.57  Aligned_cols=47  Identities=13%  Similarity=0.072  Sum_probs=36.5

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~--------~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      +-.|+|+|.|+|.++.-+.+.-.        ..+++-||+|+.+.+.-++++...
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~   73 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEH   73 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhh
Confidence            46999999999998887766522        248999999999999999998763

; PDB: 4F3N_A 1ZKD_B.

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=90.52  E-value=0.18  Score=30.99  Aligned_cols=38  Identities=18%  Similarity=0.410  Sum_probs=22.9

Q ss_pred             ccCCCCCCCc-ccccCCCccccccCCCceECCCCCcccc
Q 026825           72 LACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        72 l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      ..||.|++.- .....+..+.++.+.-.+.|.+|++.+.
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~   39 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWR   39 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeC
Confidence            3699999842 2222223333444445789999998753

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.06  E-value=0.91  Score=38.24  Aligned_cols=54  Identities=11%  Similarity=0.149  Sum_probs=43.3

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++..++.+||=+|+.+|.....+++--..+.++||++|+.+.+..-..+.+.+|
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~N  125 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPN  125 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCC
Confidence            455779999999999999888888885467999999999987766655555444

>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.96  E-value=0.18  Score=35.56  Aligned_cols=35  Identities=29%  Similarity=0.550  Sum_probs=25.2

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCC
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~  112 (232)
                      .+.||+|+-.|.....+.+       .+=.|+.|+-++....
T Consensus         1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrG   35 (88)
T COG3809           1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRG   35 (88)
T ss_pred             CcccCcCCceeeeeeecCc-------eeeeCCccccEeecch
Confidence            3789999998776543222       2458999999988754

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.77  E-value=0.11  Score=31.70  Aligned_cols=37  Identities=16%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             ccCCCCCCCc-ccccCCCccccccCCCceECCCCCccc
Q 026825           72 LACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        72 l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      +.||.|++.- .....+....++.+.-.+.|.+|++.|
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w   38 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW   38 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence            3699999942 222222333333444578999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=89.70  E-value=0.2  Score=30.11  Aligned_cols=27  Identities=19%  Similarity=0.546  Sum_probs=20.8

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (232)
                      ...|++|++.+....          .+.+.|..||+.
T Consensus         8 ~~~C~~C~~~~~~~~----------dG~~yC~~cG~~   34 (36)
T PF11781_consen    8 NEPCPVCGSRWFYSD----------DGFYYCDRCGHQ   34 (36)
T ss_pred             CCcCCCCCCeEeEcc----------CCEEEhhhCceE
Confidence            356999999855443          488999999875

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=89.55  E-value=0.28  Score=30.41  Aligned_cols=27  Identities=26%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             CCcccCCCCCCCcccccCCCccccccCCCceECCCCC
Q 026825           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK  105 (232)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~  105 (232)
                      +-.-.||.|+.||....          .+...|..|+
T Consensus        15 ML~~~Cp~C~~PL~~~k----------~g~~~Cv~C~   41 (41)
T PF06677_consen   15 MLDEHCPDCGTPLMRDK----------DGKIYCVSCG   41 (41)
T ss_pred             HhcCccCCCCCeeEEec----------CCCEECCCCC
Confidence            34457999999998742          3568899985

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=89.47  E-value=0.53  Score=40.43  Aligned_cols=49  Identities=12%  Similarity=0.209  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~--g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++-++||||.|.-.+--.+--+  |+  +.+|.|+++..++.|+..+.++.++
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~l  128 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPGL  128 (292)
T ss_pred             CceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcch
Confidence            4568999998876443333333  66  9999999999999999999887554

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=89.44  E-value=0.28  Score=43.11  Aligned_cols=40  Identities=20%  Similarity=0.379  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +..+||+|||.|..+..-    +...++|.|++...+..|++.-
T Consensus        46 gsv~~d~gCGngky~~~~----p~~~~ig~D~c~~l~~~ak~~~   85 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLGVN----PLCLIIGCDLCTGLLGGAKRSG   85 (293)
T ss_pred             cceeeecccCCcccCcCC----CcceeeecchhhhhccccccCC
Confidence            789999999999664321    4458999999999988887653

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=89.41  E-value=0.19  Score=35.15  Aligned_cols=46  Identities=15%  Similarity=0.348  Sum_probs=31.3

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECC--CCCcccccCCCccccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMT  118 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~--~C~~~y~~~~g~~d~~  118 (232)
                      +.||.||+......- ....+...+.+..|.  +||+.|.....+...+
T Consensus         2 m~CP~Cg~~a~irtS-r~~s~~~~~~Y~qC~N~eCg~tF~t~es~s~ti   49 (72)
T PRK09678          2 FHCPLCQHAAHARTS-RYITDTTKERYHQCQNVNCSATFITYESVQRYI   49 (72)
T ss_pred             ccCCCCCCccEEEEC-hhcChhhheeeeecCCCCCCCEEEEEEEEEEEE
Confidence            689999996633322 122233566789999  9999998866665555

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=88.65  E-value=0.55  Score=42.88  Aligned_cols=49  Identities=24%  Similarity=0.232  Sum_probs=41.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .++..++|+|||.|...++++.... ..++|+|.++..+.++.......+
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~-~~~~Gl~~n~~e~~~~~~~~~~~~  157 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKK-AGVVGLDNNAYEAFRANELAKKAY  157 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhcc-CCccCCCcCHHHHHHHHHHHHHHH
Confidence            3466899999999999999999864 499999999999999888766544

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=88.61  E-value=0.3  Score=38.72  Aligned_cols=40  Identities=23%  Similarity=0.464  Sum_probs=24.7

Q ss_pred             CcccCCCCCCCcccccCCCc------cccccCCCceECCCCCcccc
Q 026825           70 NVLACPICYKPLTWIGDSSL------SIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~------~~~~~~~~~l~C~~C~~~y~  109 (232)
                      ..-+||.|.++|....-..+      .+.......++|+.||+.|=
T Consensus        90 ~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW  135 (147)
T PF01927_consen   90 IFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW  135 (147)
T ss_pred             CCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence            36799999997754432111      11111234789999999963

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=88.23  E-value=2.4  Score=36.72  Aligned_cols=49  Identities=14%  Similarity=0.212  Sum_probs=44.2

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..++..|||.=+|+|..+......+.  ..+|+|+++.-++.+.+++...-
T Consensus       220 s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~~  268 (302)
T COG0863         220 SFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEGL  268 (302)
T ss_pred             CCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhhc
Confidence            45689999999999999999888888  99999999999999999988643

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=88.22  E-value=0.35  Score=38.84  Aligned_cols=38  Identities=26%  Similarity=0.535  Sum_probs=22.9

Q ss_pred             ccCCCCCCCcccccCC-C-ccccccCCCceECCCCCccccc
Q 026825           72 LACPICYKPLTWIGDS-S-LSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~-~-~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      +.||-|+++....-+. . .....+.+ ..+|++||..|..
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~-~~~c~~c~~~f~~   40 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRR-RRECLACGKRFTT   40 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceee-eeeccccCCcceE
Confidence            4699999976222111 1 11223333 3899999999865

>PRK10220 hypothetical protein; Provisional

Probab=88.08  E-value=0.53  Score=35.37  Aligned_cols=33  Identities=18%  Similarity=0.549  Sum_probs=25.6

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCC
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~  112 (232)
                      ++-.||.|++...-..          ...+.|+.|++.|....
T Consensus         2 ~lP~CP~C~seytY~d----------~~~~vCpeC~hEW~~~~   34 (111)
T PRK10220          2 SLPHCPKCNSEYTYED----------NGMYICPECAHEWNDAE   34 (111)
T ss_pred             CCCcCCCCCCcceEcC----------CCeEECCcccCcCCccc
Confidence            4568999999776543          35799999999997654

>PHA00626 hypothetical protein

Probab=87.73  E-value=0.51  Score=31.15  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=22.3

Q ss_pred             ccCCCCCCC-cccccCCCccccccCCCceECCCCCccccc
Q 026825           72 LACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        72 l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      +.||.||+. ....+-  ..   ..+..+.|+.||..|..
T Consensus         1 m~CP~CGS~~Ivrcg~--cr---~~snrYkCkdCGY~ft~   35 (59)
T PHA00626          1 MSCPKCGSGNIAKEKT--MR---GWSDDYVCCDCGYNDSK   35 (59)
T ss_pred             CCCCCCCCceeeeece--ec---ccCcceEcCCCCCeech
Confidence            369999994 443321  10   12467899999998765

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.57  E-value=0.3  Score=27.63  Aligned_cols=13  Identities=31%  Similarity=0.736  Sum_probs=7.2

Q ss_pred             cCCCCCCCccccc
Q 026825           73 ACPICYKPLTWIG   85 (232)
Q Consensus        73 ~CPiC~~~l~~~~   85 (232)
                      .||+|+++|...+
T Consensus         1 ~CP~C~s~l~~~~   13 (28)
T PF03119_consen    1 TCPVCGSKLVREE   13 (28)
T ss_dssp             B-TTT--BEEE-C
T ss_pred             CcCCCCCEeEcCC
Confidence            4999999998654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=87.31  E-value=0.47  Score=35.58  Aligned_cols=32  Identities=25%  Similarity=0.645  Sum_probs=24.7

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCC
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~  112 (232)
                      +-.||.|++...-..          ...+.|+.|++.+....
T Consensus         2 lp~CP~C~seytY~d----------g~~~iCpeC~~EW~~~~   33 (109)
T TIGR00686         2 LPPCPKCNSEYTYHD----------GTQLICPSCLYEWNENE   33 (109)
T ss_pred             CCcCCcCCCcceEec----------CCeeECccccccccccc
Confidence            357999999776543          35799999999997654

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]

Probab=87.23  E-value=0.31  Score=40.34  Aligned_cols=38  Identities=16%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      -.+.||.|++.-..++   +--.....-.++|.+||.+++.
T Consensus         5 iy~~Cp~Cg~eev~hE---Vik~~g~~~lvrC~eCG~V~~~   42 (201)
T COG1326           5 IYIECPSCGSEEVSHE---VIKERGREPLVRCEECGTVHPA   42 (201)
T ss_pred             EEEECCCCCcchhhHH---HHHhcCCceEEEccCCCcEeec
Confidence            4688999995222111   0000112247899999999965

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.21  E-value=1.3  Score=39.84  Aligned_cols=47  Identities=28%  Similarity=0.346  Sum_probs=38.0

Q ss_pred             CCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          175 PVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       175 ~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+.++|-+|+| .|..+...++. |. ++|+.+|++++-|+.|++ +..
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga  215 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGA  215 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCC
Confidence            3568999999999 46666666666 55 699999999999999999 554

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=87.20  E-value=0.33  Score=26.19  Aligned_cols=22  Identities=23%  Similarity=0.558  Sum_probs=15.8

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (232)
                      .||.||..+..             +...|+.||..
T Consensus         1 ~Cp~CG~~~~~-------------~~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIED-------------DAKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCC-------------cCcchhhhCCc
Confidence            48999997753             24569999864

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=87.17  E-value=0.55  Score=43.57  Aligned_cols=56  Identities=27%  Similarity=0.276  Sum_probs=47.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.+...++  ++..|-|+-||.|-++..++..+.  .|++-|+.++|++..+.+++.+..
T Consensus       241 erlsg~fk--~gevv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lNkv  296 (495)
T KOG2078|consen  241 ERLSGLFK--PGEVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLNKV  296 (495)
T ss_pred             HHHhhccC--CcchhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhcccccc
Confidence            34444444  488999999999999999999997  999999999999999999886554

>smart00531 TFIIE Transcription initiation factor IIE

Probab=86.89  E-value=0.33  Score=38.47  Aligned_cols=41  Identities=17%  Similarity=0.477  Sum_probs=26.5

Q ss_pred             ccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      .+..-..+.||.|+......+.  ..... +.+.+.|+.||..-
T Consensus        93 ~e~~~~~Y~Cp~C~~~y~~~ea--~~~~d-~~~~f~Cp~Cg~~l  133 (147)
T smart00531       93 DETNNAYYKCPNCQSKYTFLEA--NQLLD-MDGTFTCPRCGEEL  133 (147)
T ss_pred             cccCCcEEECcCCCCEeeHHHH--HHhcC-CCCcEECCCCCCEE
Confidence            3344578999999986655432  11111 24569999998874

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=86.67  E-value=1.7  Score=42.27  Aligned_cols=36  Identities=19%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSE  211 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~  211 (232)
                      .+...|||+||..|.++....+. +.++.|+|||+-+
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            34789999999999999888877 4456999999865

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=86.63  E-value=2.2  Score=38.63  Aligned_cols=48  Identities=23%  Similarity=0.262  Sum_probs=38.3

Q ss_pred             CCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          174 KPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       174 ~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...++.+|+-+|+| .|..+.++++. |.  +|+++|.|++-++.|++.-+.
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGAd  212 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGAD  212 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCCc
Confidence            34568999999998 33677777774 75  999999999999999987443

>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]

Probab=86.56  E-value=0.42  Score=35.20  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=28.2

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccc
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD  116 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d  116 (232)
                      ++.||.||+-|...++      .. -..+.|+.|.-.+++...+-.
T Consensus         1 m~FCP~Cgn~Live~g------~~-~~rf~C~tCpY~~~I~~ei~~   39 (105)
T KOG2906|consen    1 MLFCPTCGNMLIVESG------ES-CNRFSCRTCPYVFPISREISS   39 (105)
T ss_pred             CcccCCCCCEEEEecC------Ce-EeeEEcCCCCceeeEeeeeec
Confidence            4689999998876543      11 257899999999888754433

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=86.55  E-value=1.3  Score=39.91  Aligned_cols=43  Identities=7%  Similarity=0.116  Sum_probs=39.2

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ....+|+|.|.|..+..+....+  +|-|+++...-+-.++..+.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~  220 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA  220 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc
Confidence            47899999999999999999776  89999999999999998885

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=86.45  E-value=1.4  Score=38.63  Aligned_cols=58  Identities=22%  Similarity=0.392  Sum_probs=33.1

Q ss_pred             hhhhhcc-CchhhHHHHHHHHHHHHhcCCCCcHHHHHHHHhhcCC-CCCCeEEEEcCCcChHHH
Q 026825          132 PATEFFR-MPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSR  193 (232)
Q Consensus       132 ~~~~~~~-~~~~s~~ye~~wr~~f~~~g~~~~~~~~~~l~~~l~~-~~~~~ILDiGCGtG~~~~  193 (232)
                      .+..+|. +|..-..|+.+++.....  ++  ..-++.+.+.+.. .....|-|+|||.+.++.
T Consensus       137 ~A~~lfkedp~afdlYH~gfr~QV~k--WP--~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~  196 (325)
T KOG3045|consen  137 EAFDLFKEDPTAFDLYHAGFRSQVKK--WP--ENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS  196 (325)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHh--CC--CChHHHHHHHHHhCcCceEEEecccchhhhhh
Confidence            3333443 444555787777765521  22  2223334444432 346789999999998874

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=86.34  E-value=2.1  Score=38.61  Aligned_cols=49  Identities=27%  Similarity=0.281  Sum_probs=38.8

Q ss_pred             CCCCeEEEEcCC-cChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          176 VLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       176 ~~~~~ILDiGCG-tG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .++++++-+||| .|.++..+++...-.+|+.+|.++.-++.|++.....
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~  216 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD  216 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe
Confidence            345599999999 5777777777743369999999999999999976544

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=86.21  E-value=0.81  Score=39.43  Aligned_cols=48  Identities=19%  Similarity=0.219  Sum_probs=41.3

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ......+.+|||...|-|+.++...++|+ .+|+-++.+++.|+.|+-+
T Consensus       129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lN  176 (287)
T COG2521         129 LVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLN  176 (287)
T ss_pred             eeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccC
Confidence            34455689999999999999999999997 5999999999998887644

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=85.55  E-value=6.8  Score=35.76  Aligned_cols=53  Identities=9%  Similarity=0.049  Sum_probs=40.5

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKSG--------LFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~g--------~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +....+-.++|+|.|.|.++.-+.+..        ...++.-|++|++..+.=++.++..+
T Consensus        73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            344346689999999998776555542        13589999999999998888888764

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=85.36  E-value=0.52  Score=28.51  Aligned_cols=30  Identities=17%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCc
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~  106 (232)
                      .+.||.||..+.....  ..    ......|+.||.
T Consensus         5 ~y~C~~Cg~~fe~~~~--~~----~~~~~~CP~Cg~   34 (41)
T smart00834        5 EYRCEDCGHTFEVLQK--IS----DDPLATCPECGG   34 (41)
T ss_pred             EEEcCCCCCEEEEEEe--cC----CCCCCCCCCCCC
Confidence            4789999996654321  11    135678999997

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=85.15  E-value=0.33  Score=39.83  Aligned_cols=36  Identities=19%  Similarity=0.472  Sum_probs=26.4

Q ss_pred             cccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825           64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (232)
Q Consensus        64 ~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (232)
                      +.+..-..+.||.|+....+.+.        ....+.|+.||..
T Consensus       110 ~~e~~~~~Y~Cp~C~~rytf~eA--------~~~~F~Cp~Cg~~  145 (178)
T PRK06266        110 EEEENNMFFFCPNCHIRFTFDEA--------MEYGFRCPQCGEM  145 (178)
T ss_pred             hhccCCCEEECCCCCcEEeHHHH--------hhcCCcCCCCCCC
Confidence            34455678999999987765542        2357999999876

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=84.80  E-value=3  Score=37.74  Aligned_cols=47  Identities=26%  Similarity=0.256  Sum_probs=37.8

Q ss_pred             CCCCCCeEEEEcCCc-ChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       174 ~~~~~~~ILDiGCGt-G~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ...++.+||.+|+|. |..+..+++.....+|+++|.++++++.+++.
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            334578999999987 88888888873323699999999999999886

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=84.61  E-value=0.83  Score=40.13  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML  214 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml  214 (232)
                      .+++|||+|||.|.-...+...|. ..++..|++...+
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl  152 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL  152 (282)
T ss_pred             cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence            488999999999988888888874 3888888888766

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.45  E-value=0.33  Score=39.04  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=26.0

Q ss_pred             ccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (232)
Q Consensus        65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (232)
                      .+..-..+.||.|+....+.+.        ....+.|+.||..
T Consensus       103 ~e~~~~~Y~Cp~c~~r~tf~eA--------~~~~F~Cp~Cg~~  137 (158)
T TIGR00373       103 FETNNMFFICPNMCVRFTFNEA--------MELNFTCPRCGAM  137 (158)
T ss_pred             hccCCCeEECCCCCcEeeHHHH--------HHcCCcCCCCCCE
Confidence            4455678999999987766543        2347999999877

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.42  E-value=4.1  Score=37.47  Aligned_cols=53  Identities=6%  Similarity=-0.142  Sum_probs=40.0

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+.|+..++.+||-|..|....+.++...-.  +|++||+|+..+...+=+++.
T Consensus        27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~--~I~aVDlNp~Q~aLleLKlAa   79 (380)
T PF11899_consen   27 DMEALNIGPDDRVLTITSAGCNALDYLLAGPK--RIHAVDLNPAQNALLELKLAA   79 (380)
T ss_pred             HHHHhCCCCCCeEEEEccCCchHHHHHhcCCc--eEEEEeCCHHHHHHHHHHHHH
Confidence            34456667789999999876677666555444  999999999998877766554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=84.38  E-value=3.2  Score=36.30  Aligned_cols=50  Identities=14%  Similarity=0.056  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCc--ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGS--GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGt--G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .-...||||||-  -.....+++. .++++|+=||.++-.+..++..+....+
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~  120 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR  120 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC
Confidence            456899999993  3445555554 6678999999999999999999887654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=84.29  E-value=0.61  Score=43.18  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (232)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g  113 (232)
                      .....-.||.||..+...+.          +.++|+.||..+.....
T Consensus       346 ~~~~~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~~  382 (421)
T COG1571         346 YERVNPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETLI  382 (421)
T ss_pred             eEEcCCCCCccCCchhhcCC----------CCcccccccccCCcccc
Confidence            45566799999999887763          48999999999877543

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=83.95  E-value=0.73  Score=34.76  Aligned_cols=30  Identities=17%  Similarity=0.495  Sum_probs=23.1

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~  111 (232)
                      -.||.||..+.-.+          +.=..||.||..|...
T Consensus        10 R~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence            57999999876332          2346899999999876

The function of members of this family is unknown.

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=83.68  E-value=0.74  Score=30.22  Aligned_cols=36  Identities=28%  Similarity=0.432  Sum_probs=22.3

Q ss_pred             cccCCCCCCC--cccccCCCccccccCCCceECCCCCcccccC
Q 026825           71 VLACPICYKP--LTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (232)
Q Consensus        71 ~l~CPiC~~~--l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~  111 (232)
                      -+.||+||+.  +....|     ..+..--+.|+.|.+...+.
T Consensus         4 Wi~CP~CgnKTR~kir~D-----T~LkNfPlyCpKCK~EtlI~   41 (55)
T PF14205_consen    4 WILCPICGNKTRLKIRED-----TVLKNFPLYCPKCKQETLID   41 (55)
T ss_pred             EEECCCCCCccceeeecC-----ceeccccccCCCCCceEEEE
Confidence            4689999983  332222     12222358999998886653

>PF13453 zf-TFIIB: Transcription factor zinc-finger

Probab=83.66  E-value=0.68  Score=28.40  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCCCCcccccCC
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~  112 (232)
                      .||.|+..|.....     +  .-....|++|+-.+....
T Consensus         1 ~CP~C~~~l~~~~~-----~--~~~id~C~~C~G~W~d~~   33 (41)
T PF13453_consen    1 KCPRCGTELEPVRL-----G--DVEIDVCPSCGGIWFDAG   33 (41)
T ss_pred             CcCCCCcccceEEE-----C--CEEEEECCCCCeEEccHH
Confidence            39999997664431     1  113568999988876543

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=83.59  E-value=0.96  Score=28.43  Aligned_cols=30  Identities=13%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      .+.|..||..+...          ....++|+.||+--..
T Consensus         2 ~Y~C~~Cg~~~~~~----------~~~~irC~~CG~rIly   31 (44)
T smart00659        2 IYICGECGRENEIK----------SKDVVRCRECGYRILY   31 (44)
T ss_pred             EEECCCCCCEeecC----------CCCceECCCCCceEEE
Confidence            36899999976643          2357899999887443

present in RNA polymerase I, II and III

>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional

Probab=83.58  E-value=0.81  Score=40.83  Aligned_cols=38  Identities=21%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             CcccCCCCCC-CcccccCCCccccccCCCceECCCCCccccc
Q 026825           70 NVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        70 ~~l~CPiC~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      +.-.||+||+ |....-   ...+.....+++|.-|+..+..
T Consensus       186 ~~~~CPvCGs~P~~s~v---~~~~~~G~RyL~CslC~teW~~  224 (309)
T PRK03564        186 QRQFCPVCGSMPVSSVV---QIGTTQGLRYLHCNLCESEWHV  224 (309)
T ss_pred             CCCCCCCCCCcchhhee---eccCCCCceEEEcCCCCCcccc
Confidence            5678999999 432110   0011112357788888777654

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=83.27  E-value=1.2  Score=28.95  Aligned_cols=37  Identities=16%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             cccCCCCCCCcc-cccCCCccccccCCCceECCCCCccccc
Q 026825           71 VLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        71 ~l~CPiC~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      +..||.||+.-. ....   ..+....+.+.|..|+...+.
T Consensus         1 LkPCPfCGg~~~~~~~~---~~~~~~~~~~~C~~Cga~~~~   38 (53)
T TIGR03655         1 LKPCPFCGGADVYLRRG---FDPLDLSHYFECSTCGASGPV   38 (53)
T ss_pred             CCCCCCCCCcceeeEec---cCCCCCEEEEECCCCCCCccc
Confidence            467999999432 2210   111112345689999988654

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=83.15  E-value=3.3  Score=38.05  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=37.9

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      -.++|-+|-|.|..++++.+.-...+|+-||++++|++.+++.
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~  332 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHA  332 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhh
Confidence            5789999999999999998884345999999999999999944

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=82.71  E-value=3.5  Score=35.88  Aligned_cols=36  Identities=22%  Similarity=0.203  Sum_probs=29.8

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhC-----CCCeEEEEeCCH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSE  211 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g-----~~~~VvGvD~S~  211 (232)
                      .++..++|+|||.|.++.+++...     ....++-||-..
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            346799999999999999999885     345889999855

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr

Probab=82.44  E-value=0.38  Score=30.55  Aligned_cols=39  Identities=18%  Similarity=0.251  Sum_probs=24.2

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCC--CCcccccCC
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT--CKKTYSGVG  112 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~--C~~~y~~~~  112 (232)
                      .||.||++.....- ..-...+.+.+.+|.+  ||+.|....
T Consensus         1 ~CP~Cg~~a~ir~S-~~~s~~~~~~Y~qC~N~~Cg~tfv~~~   41 (47)
T PF04606_consen    1 RCPHCGSKARIRTS-RQLSPLTRELYCQCTNPECGHTFVANL   41 (47)
T ss_pred             CcCCCCCeeEEEEc-hhhCcceEEEEEEECCCcCCCEEEEEE
Confidence            49999996543321 1122333445789999  999886543

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=82.43  E-value=0.7  Score=25.51  Aligned_cols=23  Identities=22%  Similarity=0.619  Sum_probs=16.3

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCcc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (232)
                      ..||.||..+.             .+...|+.||..
T Consensus         3 ~~Cp~Cg~~~~-------------~~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGAEID-------------PDAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCCcCC-------------cccccChhhCCC
Confidence            46999999543             235689999864

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=82.07  E-value=3.3  Score=35.51  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=27.7

Q ss_pred             CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       179 ~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .+|||.-+|-|.-+..++..|.  +|++++-|+-+....+.
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~d  115 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKD  115 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHH
T ss_pred             CEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHH
Confidence            4899999999999999998887  99999999987555543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE

Probab=81.99  E-value=1  Score=40.17  Aligned_cols=40  Identities=18%  Similarity=0.382  Sum_probs=21.9

Q ss_pred             CCcccCCCCCC-CcccccCCCccccccCCCceECCCCCccccc
Q 026825           69 KNVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        69 ~~~l~CPiC~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      .+.-.||+||+ |....-.  .....-...+++|.-|+..|..
T Consensus       182 ~~~~~CPvCGs~P~~s~~~--~~~~~~G~RyL~CslC~teW~~  222 (305)
T TIGR01562       182 ESRTLCPACGSPPVASMVR--QGGKETGLRYLSCSLCATEWHY  222 (305)
T ss_pred             CCCCcCCCCCChhhhhhhc--ccCCCCCceEEEcCCCCCcccc
Confidence            35668999999 4321100  0000112357888888777654

The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).

>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]

Probab=81.95  E-value=0.98  Score=30.88  Aligned_cols=43  Identities=19%  Similarity=0.309  Sum_probs=30.9

Q ss_pred             cccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCc
Q 026825           64 EASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH  114 (232)
Q Consensus        64 ~~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~  114 (232)
                      +.++..-...||-|++....-++        ....+.|..||..-..+.|-
T Consensus        12 ~p~s~Fl~VkCpdC~N~q~vFsh--------ast~V~C~~CG~~l~~PTGG   54 (67)
T COG2051          12 EPRSRFLRVKCPDCGNEQVVFSH--------ASTVVTCLICGTTLAEPTGG   54 (67)
T ss_pred             CCCceEEEEECCCCCCEEEEecc--------CceEEEecccccEEEecCCC
Confidence            44555566789999996655443        44678999999997776543

>PHA02998 RNA polymerase subunit; Provisional

Probab=81.60  E-value=1  Score=36.86  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=27.9

Q ss_pred             CcccCCCCCCC-cccccCCCccccccCCCceECCCCCcccccC
Q 026825           70 NVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (232)
Q Consensus        70 ~~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~  111 (232)
                      -...||.|++. ...-..|..+.++.+...+.|..||..+.-+
T Consensus       142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp  184 (195)
T PHA02998        142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP  184 (195)
T ss_pred             cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence            34789999984 2222223444555566788999999987544

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=81.54  E-value=1.1  Score=30.38  Aligned_cols=30  Identities=20%  Similarity=0.439  Sum_probs=21.9

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      -.-.||.||......         .....+.|+.||..+
T Consensus        27 TSq~C~~CG~~~~~~---------~~~r~~~C~~Cg~~~   56 (69)
T PF07282_consen   27 TSQTCPRCGHRNKKR---------RSGRVFTCPNCGFEM   56 (69)
T ss_pred             CccCccCcccccccc---------cccceEEcCCCCCEE
Confidence            456799999966541         134689999998873

More information about these proteins can be found at Protein of the Month: Transposase [].

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=81.47  E-value=1.3  Score=29.28  Aligned_cols=35  Identities=17%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             CcccCCCCCCCcccccCC-CccccccCCCceECCCCCc
Q 026825           70 NVLACPICYKPLTWIGDS-SLSIESAAGSSLQCNTCKK  106 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~-~~~~~~~~~~~l~C~~C~~  106 (232)
                      .+..||-||.+-...... ....+.  .-.+.|..||.
T Consensus         2 ~LkPCPFCG~~~~~~~~~~~~~~~~--~~~V~C~~Cga   37 (61)
T PF14354_consen    2 ELKPCPFCGSADVLIRQDEGFDYGM--YYYVECTDCGA   37 (61)
T ss_pred             CCcCCCCCCCcceEeecccCCCCCC--EEEEEcCCCCC
Confidence            578899998754433210 001000  03578999988

>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []

Probab=81.38  E-value=0.42  Score=42.12  Aligned_cols=37  Identities=22%  Similarity=0.402  Sum_probs=14.2

Q ss_pred             cccCCCCCCC-cccccCCCccccccCCCceECCCCCccccc
Q 026825           71 VLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        71 ~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      .-.||+||++ ....-   ...+.-...+++|.-|+..+..
T Consensus       172 ~g~CPvCGs~P~~s~l---~~~~~~G~R~L~Cs~C~t~W~~  209 (290)
T PF04216_consen  172 RGYCPVCGSPPVLSVL---RGGEREGKRYLHCSLCGTEWRF  209 (290)
T ss_dssp             -SS-TTT---EEEEEE---E------EEEEEETTT--EEE-
T ss_pred             CCcCCCCCCcCceEEE---ecCCCCccEEEEcCCCCCeeee
Confidence            4799999993 22110   0010001257888888877665

The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.

>COG1779 C4-type Zn-finger protein [General function prediction only]

Probab=81.36  E-value=0.79  Score=38.12  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=26.2

Q ss_pred             CCcccCCCCCCCcccccCCCcccccc---CCCceECCCCCccccc
Q 026825           69 KNVLACPICYKPLTWIGDSSLSIESA---AGSSLQCNTCKKTYSG  110 (232)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~---~~~~l~C~~C~~~y~~  110 (232)
                      ...+-||+|++.|..... ..+.+.+   .-....|.+||..+..
T Consensus        12 ~~~~~CPvCg~~l~~~~~-~~~IPyFG~V~i~t~~C~~CgYR~~D   55 (201)
T COG1779          12 ETRIDCPVCGGTLKAHMY-LYDIPYFGEVLISTGVCERCGYRSTD   55 (201)
T ss_pred             eeeecCCcccceeeEEEe-eecCCccceEEEEEEEccccCCcccc
Confidence            456889999997665543 2222222   2245799999887655

>PRK12495 hypothetical protein; Provisional

Probab=81.21  E-value=1.1  Score=37.82  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=26.2

Q ss_pred             ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      ..+..+.||.||.|+...           .+..+|+.|+..+..
T Consensus        38 atmsa~hC~~CG~PIpa~-----------pG~~~Cp~CQ~~~~~   70 (226)
T PRK12495         38 ATMTNAHCDECGDPIFRH-----------DGQEFCPTCQQPVTE   70 (226)
T ss_pred             cccchhhcccccCcccCC-----------CCeeECCCCCCcccc
Confidence            456778999999998732           368899999988665

>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12

Probab=81.19  E-value=1  Score=34.05  Aligned_cols=47  Identities=17%  Similarity=0.294  Sum_probs=26.9

Q ss_pred             ccccccCCcccCCCCCCCc-ccccCCCccccccCCCceECCCCCcccc
Q 026825           63 NEASTSKNVLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        63 ~~~~~~~~~l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      +++....-.-.||.||++- ..+..+..+-++...-.+.|++|+..+.
T Consensus        66 ~~~~ga~I~~kCpkCghe~m~Y~T~QlRSADEGQTVFYTC~kC~~k~~  113 (116)
T KOG2907|consen   66 SSADGAVIKHKCPKCGHEEMSYHTLQLRSADEGQTVFYTCPKCKYKFT  113 (116)
T ss_pred             ccccccchhccCcccCCchhhhhhhhcccccCCceEEEEcCccceeee
Confidence            3444455567899999942 2222222233333333689999987653

2/RPA12 [Transcription]

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=80.72  E-value=1.3  Score=32.76  Aligned_cols=27  Identities=22%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      .||.||+.|...+           +.+.|+.|+..+..
T Consensus         2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~   28 (104)
T TIGR01384         2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK   28 (104)
T ss_pred             CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence            6999999886432           47999999987654

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=80.51  E-value=0.79  Score=33.36  Aligned_cols=31  Identities=26%  Similarity=0.551  Sum_probs=22.1

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      ..+.||.|+..-....         ..+++.|..|+..+.
T Consensus        34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~A   64 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKFA   64 (90)
T ss_dssp             S-BEESSSSSSEEEEE---------ETTEEEETTTTEEEE
T ss_pred             CCCcCCCCCCceeEEe---------eeEEeecCCCCCEEe
Confidence            5688999999653321         247899999987754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.43  E-value=1.1  Score=33.59  Aligned_cols=25  Identities=32%  Similarity=0.857  Sum_probs=19.7

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      +..||+|+..+...             .++|++|+..-
T Consensus         6 ~~~cPvcg~~~iVT-------------eL~c~~~etTV   30 (122)
T COG3877           6 INRCPVCGRKLIVT-------------ELKCSNCETTV   30 (122)
T ss_pred             CCCCCcccccceeE-------------EEecCCCCceE
Confidence            56899999977654             58999997663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	4e-08
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-07
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	5e-07
3ege_A	261	Putative methyltransferase from antibiotic biosyn	6e-07
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	8e-07
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	9e-07
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	9e-07
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	1e-06
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	1e-06
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	1e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-06
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-06
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	3e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	4e-06
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	5e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	5e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	7e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-05
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-05
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	1e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-05
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	2e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-05
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	4e-05
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	4e-05
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	5e-05
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	6e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	6e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	7e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	8e-05
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	9e-05
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	9e-05
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	1e-04
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-04
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	3e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	4e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	4e-04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	7e-04
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	8e-04

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 51.5 bits (123), Expect = 4e-08
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 35/152 (23%)

Query: 72  LACPICYKPLTWIGDSSLSIESAAGSSLQCNTC------KKTYSGVGTHFDMTAASGSKD 125
            +CP+C++PL+              +S  C         K+ Y     +        S+D
Sbjct: 3   FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGY----VNLLPVQHKRSRD 47

Query: 126 YGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
            G+  S      R  F+   + +  R   V             ++  L       ++D  
Sbjct: 48  PGD--SAEMMQARRAFLDAGHYQPLRDAIV-----------AQLRERL-DDKATAVLDIG 93

Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
           CG G ++  FA +        LD S+  +K  
Sbjct: 94  CGEGYYTHAFADALPEITTFGLDVSKVAIKAA 125

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
           E+  ++  L  V G  I+D  CG G F R   + G  S V+ LD SE ML +
Sbjct: 31  EWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLAR 81

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 48.0 bits (114), Expect = 5e-07
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
             E+  +K  L       ++D  CG G      A+ G    V+ +D SE ML +
Sbjct: 30  AGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTE 82

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
                 +    +   L    G  I D   G+G +S   A  GLF  V A++ S  M +Q 
Sbjct: 15  TRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQA 72

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
            F +   +  W                   + Y+K      ++D  CG G  +   +++G
Sbjct: 25  EFWNQNSQEMWDSGSR-------STIIPFFEQYVKK--EAEVLDVGCGDGYGTYKLSRTG 75

Query: 200 LFSLVVALDYSENMLKQ 216
                V +D SE M+++
Sbjct: 76  --YKAVGVDISEVMIQK 90

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 47.2 bits (112), Expect = 9e-07
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
            L+  Y+K    G ++D +CG G FS +    G    VV +D SE+M+++
Sbjct: 30  PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE--VVGVDISEDMIRK 75

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
             ++ YLK      ++D   G+G +S    + G    VV +D S+ ML+ 
Sbjct: 46  SFLEEYLKN--PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEV 91

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 130 MSPATEFFRMPFMS----FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
                 + R+  +S           ++   +            +    K +    ++D  
Sbjct: 69  FVEPQAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLG 128

Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
           CG G  S   +  G    V + D++EN +    E  ++E
Sbjct: 129 CGQGRNSLYLSLLGYD--VTSWDHNENSIAFLNETKEKE 165

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
           +K  + +        ++  + +D +CG+G  +             A+D S+ ML +   
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN--TWAVDLSQEMLSEAEN 77

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 145 IYERGWRQNFVWGGF-PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 203
           + E  W +  V G   P     + ++  YL+      I+D  CGSG  S   A  G    
Sbjct: 1   MPESYWEK--VSGKNIPSSLDLYPIIHNYLQE--DDEILDIGCGSGKISLELASKG--YS 54

Query: 204 VVALDYSENMLK 215
           V  +D +   ++
Sbjct: 55  VTGIDINSEAIR 66

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 146 YERGWRQNFVWGGFPGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLV 204
           Y   W +       P PE  F   +   L P     +++A CG G  +  F         
Sbjct: 21  YRHPWARVLSG---PDPELTFDLWLSRLLTP--QTRVLEAGCGHGPDAARFGPQAAR--W 73

Query: 205 VALDYSENMLKQC 217
            A D+S  +LK  
Sbjct: 74  AAYDFSPELLKLA 86

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFA 196
           +     + +++      ++        +    + G L+      ++D +CG+G+ S +  
Sbjct: 22  YADGEAARVWQL-----YIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 76

Query: 197 KSGLFSLVVALDYSENMLKQ 216
           + G    V ++D S+ MLK 
Sbjct: 77  EEGFS--VTSVDASDKMLKY 94

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
           +     G I+D  CG+G + +   +    + +  +D +   LK+  E
Sbjct: 13  IFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKE 57

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 150 WRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALD 208
           W      G      +   + +   +       ++D  CG G   R  A  G     V +D
Sbjct: 24  WIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG--IEAVGVD 81

Query: 209 YSENMLKQ 216
               ++  
Sbjct: 82  GDRTLVDA 89

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
            G     E    ++       + G I+D   G+G ++   A  G    +  L+ +  +++
Sbjct: 20  LGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVE 77

Query: 216 QCYE 219
              +
Sbjct: 78  LARQ 81

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
           G L    G  I++  CG+G  +     +G    V A D S  +  + 
Sbjct: 39  GELPA--GAKILELGCGAGYQAEAMLAAGFD--VDATDGSPELAAEA 81

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 154 FVWGGFPGPEKEFELMKGYLKPVL---GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           FV G     ++ F   +  L+ V+    GN+++   G+G  +     +G    V  ++ S
Sbjct: 19  FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76

Query: 211 ENMLKQC 217
             M    
Sbjct: 77  REMRMIA 83

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           +  +V+G  P        +      +  G I+  + G G  +   A  G    V A+D S
Sbjct: 8   QSEYVYGTEPND-----FLVSVANQIPQGKILCLAEGEGRNACFLASLGYE--VTAVDQS 60

Query: 211 ENMLKQCYEFVQQE 224
              L +  +  Q++
Sbjct: 61  SVGLAKAKQLAQEK 74

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
             ++      + G++++ + G+G ++R  +       V ALD S  M+ +
Sbjct: 36  AALERLRAGNIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAE 83

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE- 219
            +E   +   ++       +++D +CG+G+  R  A S     V  L+ S +ML      
Sbjct: 34  HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGT--VEGLELSADMLAIARRR 91

Query: 220 -----FVQQ 223
                    
Sbjct: 92  NPDAVLHHG 100

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE------F 220
           +L++         +++D +CG+G     F K         L+ SE+ML    +       
Sbjct: 32  DLVRSRTPE--ASSLLDVACGTGTHLEHFTKEFGD--TAGLELSEDMLTHARKRLPDATL 87

Query: 221 VQQ 223
            Q 
Sbjct: 88  HQG 90

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 134 TEFFRM----PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSG 189
           T +  +    P  S  Y + WR   +         E  L+        G  I+DA CG G
Sbjct: 3   TTWKELTDNNPAHSENYAQRWRN--LAAAGNDIYGEARLIDAMAPR--GAKILDAGCGQG 58

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQC 217
                 +K G    V+  D    ++   
Sbjct: 59  RIGGYLSKQGHD--VLGTDLDPILIDYA 84

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 147 ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVA 206
                  + W G         L++  L+P     I+   CG+   S      G F  V +
Sbjct: 16  GAADSAPYDWFG--DFSSFRALLEPELRP--EDRILVLGCGNSALSYELFLGG-FPNVTS 70

Query: 207 LDYSENMLKQCYE 219
           +DYS  ++     
Sbjct: 71  VDYSSVVVAAMQA 83

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
             P  G  +++A CG G  + I AK+   + + ++D S   L++
Sbjct: 35  YPP--GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEK 76

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 133 ATEFFRMPFMSFIYERGWRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLF 191
           ++ F    F S  Y    R        P  P   ++++  Y        ++D  CG G  
Sbjct: 1   SSTFSASDFNSERYSSS-R--------PSYPSDFYKMIDEYH-DGERKLLVDVGCGPGTA 50

Query: 192 SRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN 226
           +   A+    F  ++  D S  M+K      +   +
Sbjct: 51  TLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD 86

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 9/77 (11%), Positives = 17/77 (22%), Gaps = 17/77 (22%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
                +  +            G                    ++   G+G  +      G
Sbjct: 17  AHPPEVAGQIATAMASAVHPKGE---------------EPVFLELGVGTGRIALPLIARG 61

Query: 200 LFSLVVALDYSENMLKQ 216
                +ALD    ML+ 
Sbjct: 62  YR--YIALDADAAMLEV 76

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
           M    E  +   +            E+++  +K V  G  +D  CG+G  S   A +G  
Sbjct: 3   MVIRDENYFTDKYELTRTHS-----EVLE-AVKVVKPGKTLDLGCGNGRNSLYLAANGYD 56

Query: 202 SLVVALDYSENML 214
             V A D +   +
Sbjct: 57  --VDAWDKNAMSI 67

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
            ++S    +  +       +  WR +         E+  +L++  L      N ++  C 
Sbjct: 6   TMVSVDNTYQSLE-RELANDDPWRLDDNPFE---RERHTQLLRLSLSSGAVSNGLEIGCA 61

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
           +G F+   A       +  +D     + +
Sbjct: 62  AGAFTEKLAPHC--KRLTVIDVMPRAIGR 88

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 163 EKEFELMKGYLK---PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
           + E + ++   K         ++D +CG+G+ +   A+ G    VV LD  E ML+    
Sbjct: 24  KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARR 81

Query: 220 FVQQE 224
             ++ 
Sbjct: 82  KAKER 86

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE 224
           + +K ++K   G  ++DA+CG+G  +   A   G    V   D  +  +    + +   
Sbjct: 14  DYIKMFVKE--GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL 70

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 15/76 (19%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
               ++  +  +                          +I+D   G+GL S    +    
Sbjct: 24  FIPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPE 68

Query: 202 SLVVALDYSENMLKQC 217
           +    +D SE ML+  
Sbjct: 69  ATFTLVDMSEKMLEIA 84

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQ 216
           L+    K     +I+D  CG G    +        S    +D  E +L +
Sbjct: 13  LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE 62

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
            G +++ + G G  +  F   G    V AL+ S ++L   
Sbjct: 83  SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAF 120

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 146 YERGWRQNFVWGGFP----GPEKEFELMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSG 199
           +E+ W +  V           E+   +     + +      +ID +CG+G  ++  ++  
Sbjct: 19  WEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQ-- 76

Query: 200 LFSLVVALDYSENMLKQ 216
            F  V+ LD S++ L+ 
Sbjct: 77  FFPRVIGLDVSKSALEI 93

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
           +      N  D  CG G  + +       +++  +D  ++ML++
Sbjct: 29  VPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEK 72

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
            +    +   ++P  G  I D  CG+G  + + A    +  V  +D SE ML+   E   
Sbjct: 21  PEWVAWVLEQVEP--GKRIADIGCGTGTATLLLADH--YE-VTGVDLSEEMLEIAQEKAM 75

Query: 223 QE 224
           + 
Sbjct: 76  ET 77

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
           + +   L       ++DA+ G+G  +   A  GL   V A D  E  L +  + +   
Sbjct: 14  DFLAEVLDD--ESIVVDATMGNGNDTAFLA--GLSKKVYAFDVQEQALGKTSQRLSDL 67

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
           L P  G  I+D  CG+G  +   A+SG  + V+  D +  M+++
Sbjct: 53  LNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEK 94

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
            G  ID   G G  S   AK   FS + ALD+S++M + 
Sbjct: 44  AGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEI 81

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
            +E   +KG L P  G ++++   G+G + R           V ++ SE ML  
Sbjct: 24  AEEERALKGLLPP--GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAV 71

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ 216
            +   +           ++D + G G  +  FA       VVA D +E++LK 
Sbjct: 24  SDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKV 74

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPE--KEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194
           F   F+   ++   RQ     G   PE  ++       L       I D  CG+G  +  
Sbjct: 11  FDFSFICNYFKLLKRQ-----GPGSPEATRKAVSFINELTD--DAKIADIGCGTGGQTLF 63

Query: 195 FAKSGLFSLVVALDYSENMLKQ 216
            A       +  +D   + ++ 
Sbjct: 64  LADYVKGQ-ITGIDLFPDFIEI 84

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 15/92 (16%)

Query: 145 IYERGWRQNFVWG--GFPGPEKEFE----------LMKGYLKPVLGGNIIDASCGSGLFS 192
            + R W +N  +G     G +   +          +    ++   G  ++D  CG G  +
Sbjct: 19  PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRS--GDRVLDVGCGIGKPA 76

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
              A +     V  +  S   + Q        
Sbjct: 77  VRLATARDVR-VTGISISRPQVNQANARATAA 107

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
            LK V    +ID  CG G    +  K   F  +  +D S ++L++ 
Sbjct: 24  VLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERA 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.54
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.3
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.06
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.02
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.99
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.98
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.97
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.96
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.95
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.95
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.94
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.92
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.9
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.9
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.9
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.89
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.88
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.88
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.88
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.87
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.87
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.87
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.87
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.86
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.86
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.85
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.85
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.85
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.83
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.83
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.82
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.82
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.82
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.81
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.81
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.81
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.8
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.8
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.8
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.8
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.8
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.8
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.78
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.78
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.78
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.77
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.77
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.77
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.77
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.76
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.76
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.76
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.76
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.76
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.76
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.75
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.75
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.75
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.75
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.75
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.75
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.75
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.75
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.74
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.74
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.74
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.74
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.74
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.73
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.73
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.73
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.73
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.72
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.72
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.72
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.72
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.72
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.72
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.71
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.71
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.7
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.7
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.7
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.7
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.7
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.7
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.69
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.69
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.69
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.69
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.68
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.68
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.68
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.68
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.68
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.68
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.68
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.67
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.67
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.67
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.67
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.67
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.67
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.67
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.66
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.66
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.66
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.66
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.66
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.66
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.66
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.66
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.66
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.66
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.65
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.64
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.64
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.64
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.64
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.64
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.63
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.63
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.63
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.63
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.63
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.63
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.63
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.63
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.62
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.62
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.62
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.62
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.62
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.61
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.61
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.61
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.61
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.61
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.6
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.6
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.6
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.6
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.59
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.59
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.59
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.59
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.59
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.59
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.58
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.58
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.58
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.58
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.58
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.57
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.57
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.57
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.56
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.56
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.56
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.55
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.55
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.55
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.55
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.55
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.53
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.53
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.53
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.52
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.52
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.52
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.52
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.52
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.51
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.51
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.51
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.51
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.51
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.51
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.5
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.5
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.49
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.47
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.47
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.47
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.46
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.46
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.46
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.45
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.45
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.45
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.44
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.43
3ocj_A	305	Putative exported protein; structural genomics, PS	98.43
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.42
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.41
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.41
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.41
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.41
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.4
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.4
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.4
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.4
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.38
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.37
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.35
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.35
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.35
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	98.34
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.34
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	98.32
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.31
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.31
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.31
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	98.3
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	98.29
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.29
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	98.29
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.29
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.29
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.28
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.27
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.27
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.27
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.26
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.25
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.24
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.24
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.24
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.21
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.21
2o07_A	304	Spermidine synthase; structural genomics, structur	98.21
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.21
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.21
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.2
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.19
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.19
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.18
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.17
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.17
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.17
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.17
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.16
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.16
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.15
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.15
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.15
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.14
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.14
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.14
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.12
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.09
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	98.09
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.08
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.08
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.05
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.05
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.02
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.02
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.01
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.99
2k5r_A	97	Uncharacterized protein XF2673; solution structure	97.98
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.93
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.89
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.88
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.88
3lkd_A	542	Type I restriction-modification system methyltrans	97.86
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.86
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.83
3khk_A	544	Type I restriction-modification system methylation	97.82
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.82
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.8
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.77
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.77
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.75
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.71
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.7
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.69
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.67
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.53
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.51
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.49
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.4
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.27
3ufb_A	530	Type I restriction-modification system methyltran	97.21
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.2
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.96
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.85
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.76
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.68
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.67
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.64
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.44
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	96.33
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	96.29
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.22
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.19
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.08
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.08
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.04
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	95.74
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.69
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	95.17
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	94.78
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	94.22
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	93.87
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	93.62
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	93.61
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	93.23
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	92.75
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	92.37
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	91.63
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	90.99
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	90.53
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	90.24
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	89.79
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	89.79
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.22
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	89.06
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	88.66
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	88.56
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	88.43
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	88.19
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	88.0
1tfi_A	50	Transcriptional elongation factor SII; transcripti	87.17
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	86.98
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	86.11
3me5_A	482	Cytosine-specific methyltransferase; structural ge	85.89
2j6a_A	141	Protein TRM112; translation termination, methyltra	85.61
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	85.26
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	85.07
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	84.87
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	84.43
3po3_S	178	Transcription elongation factor S-II; RNA polymera	84.4
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	84.38
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	84.2
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	84.09
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	84.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	83.89
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	83.21
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	83.11
2akl_A	138	PHNA-like protein PA0128; two domains, Zn binding	83.11
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	83.06
3gms_A	340	Putative NADPH:quinone reductase; structural genom	82.61
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	82.48
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	82.46
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	82.13
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	82.13
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	82.06
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	81.97
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	81.86
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	81.43
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	81.31
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	81.22
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	81.19
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	80.6
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	80.18
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	80.15

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.54  E-value=7.5e-14  Score=118.64  Aligned_cols=126  Identities=17%  Similarity=0.264  Sum_probs=84.8

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccccCCcccccccchhhhhccCchhhHHHHHHHH
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWR  151 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~wr  151 (232)
                      |.||.|+..+...+           +.++|.+|+.++....||++++...........         +  ....+  ..+
T Consensus         3 ~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~---------~--~~~~~--~~~   58 (269)
T 1p91_A            3 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPG---------D--SAEMM--QAR   58 (269)
T ss_dssp             BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCS---------S--SHHHH--HHH
T ss_pred             ccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCCCC---------C--CHHHH--HHH
Confidence            78999999876542           479999999998888999888754221111000         0  00011  113


Q ss_pred             HHHHhcCCCCcHH--HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          152 QNFVWGGFPGPEK--EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       152 ~~f~~~g~~~~~~--~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ..+...+++.+..  ....+...++ .++.+|||||||+|.++..+++.....+|+|+|+|+.|++.|+++..
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~  130 (269)
T 1p91_A           59 RAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP  130 (269)
T ss_dssp             HHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC
Confidence            3445556665422  2233444342 35789999999999999999998433499999999999999999863

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.30  E-value=6.3e-12  Score=113.61  Aligned_cols=52  Identities=13%  Similarity=0.187  Sum_probs=45.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++
T Consensus        97 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           97 RDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTT
T ss_pred             HHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHc
Confidence            4455566656688999999999999999999987  999999999999999987

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.06  E-value=2.9e-10  Score=93.12  Aligned_cols=49  Identities=20%  Similarity=0.291  Sum_probs=43.8

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      .+...++.+|||+|||+|.++..|+++|.  +|+|||+|+.|++.|+++..
T Consensus        17 ~l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~   65 (203)
T 1pjz_A           17 SLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERG   65 (203)
T ss_dssp             HHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHC
T ss_pred             hcccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHcc
Confidence            34444688999999999999999999987  99999999999999999875

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.02  E-value=9.8e-10  Score=89.37  Aligned_cols=60  Identities=13%  Similarity=-0.028  Sum_probs=51.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.|++.|++++...+.
T Consensus        30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   89 (204)
T 3e05_A           30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA   89 (204)
T ss_dssp             HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            455566776678999999999999999999998666999999999999999999876553

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.99  E-value=9.4e-10  Score=87.92  Aligned_cols=48  Identities=21%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++.+.+.
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~~~--~v~~vD~s~~~l~~a~~~~~~~~~   69 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGLSK--KVYAFDVQEQALGKTSQRLSDLGI   69 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence            488999999999999999999865  999999999999999999987654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.98  E-value=1.8e-09  Score=92.35  Aligned_cols=50  Identities=18%  Similarity=0.314  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g--~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||||||+|.++..+++..  .+.+|+|||+|+.||+.|++++...+.
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~  121 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA  121 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc
Confidence            48999999999999999999873  345999999999999999999887653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.97  E-value=2.4e-09  Score=87.90  Aligned_cols=58  Identities=17%  Similarity=0.185  Sum_probs=49.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++++..+.
T Consensus        45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~g~  102 (204)
T 3njr_A           45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGG--RAITIEPRADRIENIQKNIDTYGL  102 (204)
T ss_dssp             HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcCC
Confidence            3445556666789999999999999999999965  999999999999999999877654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.96  E-value=1.3e-09  Score=93.41  Aligned_cols=56  Identities=16%  Similarity=0.122  Sum_probs=49.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ..+...+...++.+|||||||+|.++..+++++.  +|+|+|+|+.|++.|++++...
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc
Confidence            4455566666789999999999999999999987  9999999999999999998654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.95  E-value=1.5e-09  Score=92.42  Aligned_cols=45  Identities=22%  Similarity=0.330  Sum_probs=41.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      .++.+|||+|||+|..+..|++.|+  +|+|||+|+.|++.|+++.+
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~  111 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQN  111 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcc
Confidence            3578999999999999999999998  99999999999999988764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.95  E-value=1.6e-09  Score=85.52  Aligned_cols=60  Identities=18%  Similarity=0.134  Sum_probs=50.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++++...+.
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   74 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV   74 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC
Confidence            445556666678899999999999999999985445999999999999999999887654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.94  E-value=1.9e-09  Score=88.41  Aligned_cols=59  Identities=24%  Similarity=0.344  Sum_probs=49.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.+...++.+|||||||+|.++..+++.+...+|+|+|+|+.|++.|++++...+
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~   77 (217)
T 3jwh_A           19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR   77 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhc
Confidence            34444555456789999999999999999998765699999999999999999987554

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.92  E-value=3.8e-10  Score=96.39  Aligned_cols=54  Identities=26%  Similarity=0.295  Sum_probs=45.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ...++.+.+..+.  +++|||||||+|.++..|++.+.  +|+|+|+|+.|++.|+++
T Consensus        27 ~~l~~~l~~~~~~--~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~   80 (257)
T 4hg2_A           27 RALFRWLGEVAPA--RGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRH   80 (257)
T ss_dssp             HHHHHHHHHHSSC--SSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCC
T ss_pred             HHHHHHHHHhcCC--CCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhc
Confidence            4445566666554  67999999999999999999987  999999999999988753

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.90  E-value=2.5e-09  Score=87.70  Aligned_cols=59  Identities=22%  Similarity=0.381  Sum_probs=48.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.+...++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.|++++...+
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~   77 (219)
T 3jwg_A           19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR   77 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhc
Confidence            34444454456789999999999999999998865699999999999999999987543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.90  E-value=2.9e-09  Score=85.64  Aligned_cols=50  Identities=14%  Similarity=0.133  Sum_probs=44.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++...+.
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~   92 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGA-ASVLFVESDQRSAAVIARNIEALGL   92 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEECCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCC
Confidence            3578999999999999998888764 4899999999999999999987664

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.90  E-value=2.9e-09  Score=83.33  Aligned_cols=47  Identities=21%  Similarity=0.249  Sum_probs=43.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||+|||+|.++..+++.++  .|+|+|+|+.|++.|++++...+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~   87 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG   87 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcC
Confidence            478999999999999999999988  79999999999999999988765

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.89  E-value=6.8e-09  Score=81.87  Aligned_cols=59  Identities=22%  Similarity=0.276  Sum_probs=49.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ...+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus        24 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~   82 (183)
T 2yxd_A           24 RAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCK--FVYAIDYLDGAIEVTKQNLAKFNI   82 (183)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSS--EEEEEECSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCC
Confidence            34555566666688999999999999999999544  999999999999999999987653

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.88  E-value=3.9e-09  Score=86.56  Aligned_cols=59  Identities=14%  Similarity=0.147  Sum_probs=50.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +..+..+++.  ..+|||+|||+|.++..++...+..+|+|+|+|+.|++.+++++...+.
T Consensus        40 Y~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~   98 (200)
T 3fzg_A           40 YTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT   98 (200)
T ss_dssp             HHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC
Confidence            3445556654  8899999999999999999987667999999999999999999987664

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.88  E-value=7.3e-09  Score=82.32  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=50.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ....+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus        40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~   99 (194)
T 1dus_A           40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNL   99 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHcCC
Confidence            345566667666788999999999999999999855  999999999999999999876553

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.88  E-value=2.6e-09  Score=89.98  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=50.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +..+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++.+.+
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~   83 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG   83 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC
Confidence            34556666666789999999999999999999987  99999999999999999987654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.87  E-value=3.2e-09  Score=100.10  Aligned_cols=52  Identities=25%  Similarity=0.634  Sum_probs=47.3

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY  231 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~  231 (232)
                      +.+|||||||.|.++..|++.|.  +|+|||+|+.||+.|+..+.+.+..+.+|
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~~~~~~~  118 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENPDFAAEF  118 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTSTTSEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcCCCceEE
Confidence            68999999999999999999998  99999999999999999998877555444

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.87  E-value=5.7e-09  Score=82.69  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.+...+. ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+
T Consensus        20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~   78 (177)
T 2esr_A           20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTK   78 (177)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence            34444554 34578999999999999999998853 499999999999999999998765

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.87  E-value=3.7e-09  Score=87.86  Aligned_cols=51  Identities=12%  Similarity=0.068  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+.+|||||||+|.++..+++..++..|+|||+|+.|++.|++++...+..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~   84 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS   84 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999987778999999999999999998876643

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.87  E-value=1e-08  Score=85.75  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=51.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .....+...+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|++++...+.
T Consensus        23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~   84 (256)
T 1nkv_A           23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV   84 (256)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC
Confidence            334556666766678899999999999999999873 23999999999999999999876553

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.86  E-value=1.1e-08  Score=89.18  Aligned_cols=85  Identities=8%  Similarity=-0.043  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHHHHHhcC--------CCCcH---HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCC
Q 026825          142 MSFIYERGWRQNFVWGG--------FPGPE---KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS  210 (232)
Q Consensus       142 ~s~~ye~~wr~~f~~~g--------~~~~~---~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S  210 (232)
                      ....||..|.+.++.+.        |+.-+   .........+...++.+|||||||+|.++..+..+..+++|+|+|+|
T Consensus        76 ~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis  155 (298)
T 3fpf_A           76 LGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIE  155 (298)
T ss_dssp             HHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESS
T ss_pred             HHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECC
Confidence            34568888888774431        21111   11111123455567999999999999776443333233499999999


Q ss_pred             HHHHHHHHHHhhccCC
Q 026825          211 ENMLKQCYEFVQQESN  226 (232)
Q Consensus       211 ~~ml~~A~~~~~~~~~  226 (232)
                      ++|++.|++++++.+.
T Consensus       156 ~~~l~~Ar~~~~~~gl  171 (298)
T 3fpf_A          156 PDIAELSRKVIEGLGV  171 (298)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999987664

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.86  E-value=1.9e-08  Score=83.08  Aligned_cols=60  Identities=18%  Similarity=0.228  Sum_probs=49.7

Q ss_pred             HHHHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+...+. ..++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++++...+
T Consensus        32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~   92 (234)
T 3dtn_A           32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL   92 (234)
T ss_dssp             HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT
T ss_pred             HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC
Confidence            345555554 346789999999999999999999655699999999999999999987654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.85  E-value=4.5e-09  Score=88.66  Aligned_cols=56  Identities=14%  Similarity=0.234  Sum_probs=50.0

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+...++.+|||+|||+|.++..+++. |+.++|+|+|+|+.|++.+++++.+.+|+
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni  128 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNI  128 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTE
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCe
Confidence            355678999999999999999999998 88889999999999999999998876653

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.85  E-value=4.5e-09  Score=86.68  Aligned_cols=50  Identities=14%  Similarity=0.126  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||||||+|.++..+++..++.+|+|+|+|+.|++.|++++...+.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~   87 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA   87 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC
Confidence            47899999999999999999996666999999999999999999887654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.85  E-value=8.7e-09  Score=83.85  Aligned_cols=58  Identities=16%  Similarity=0.147  Sum_probs=50.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus        67 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~~  124 (210)
T 3lbf_A           67 ARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLDL  124 (210)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcCC
Confidence            4455566666789999999999999999999976  999999999999999999987553

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.83  E-value=4.1e-09  Score=85.27  Aligned_cols=60  Identities=25%  Similarity=0.200  Sum_probs=36.0

Q ss_pred             HHHHhhcCC-CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~-~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+.. .++.+|||+|||+|.++..+++.++..+|+|+|+|+.|++.|++++...+.
T Consensus        19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   79 (215)
T 4dzr_A           19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA   79 (215)
T ss_dssp             HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------
T ss_pred             HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence            334445543 568899999999999999999996656999999999999999999886653

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.83  E-value=8.4e-09  Score=87.44  Aligned_cols=52  Identities=10%  Similarity=-0.058  Sum_probs=46.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .++.+|||||||+|..+..++...++.+|+|+|+|+.|++.|++++...+..
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~  130 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK  130 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            4578999999999999999999866669999999999999999999877653

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.82  E-value=9.8e-09  Score=82.26  Aligned_cols=55  Identities=25%  Similarity=0.274  Sum_probs=47.4

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~   78 (199)
T 2xvm_A           24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIEN   78 (199)
T ss_dssp             HHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCC
Confidence            44455555678999999999999999999976  99999999999999999987654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.82  E-value=1.2e-08  Score=87.11  Aligned_cols=55  Identities=20%  Similarity=0.273  Sum_probs=45.9

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +...+.. ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus        61 ~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~  115 (285)
T 4htf_A           61 VLAEMGP-QKLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKGV  115 (285)
T ss_dssp             HHHHTCS-SCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-CC
T ss_pred             HHHhcCC-CCCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC
Confidence            3344443 367999999999999999999977  999999999999999999876553

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.82  E-value=3.8e-09  Score=86.26  Aligned_cols=49  Identities=16%  Similarity=0.093  Sum_probs=43.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++...+.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~  101 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKC  101 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCC
Confidence            478999999999999998777764 4899999999999999999987653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.81  E-value=8.3e-09  Score=86.60  Aligned_cols=60  Identities=13%  Similarity=0.224  Sum_probs=51.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +..+..+++.  +.+|||||||+|.++..++..++..+|+|+|+++.+++.|++++..++..
T Consensus         6 L~~l~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~   65 (225)
T 3kr9_A            6 LELVASFVSQ--GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK   65 (225)
T ss_dssp             HHHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhCCC--CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            3456666654  78999999999999999999987668999999999999999999987753

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.81  E-value=5.1e-09  Score=85.61  Aligned_cols=49  Identities=10%  Similarity=0.072  Sum_probs=43.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++...+.
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~  102 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKA  102 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCC
Confidence            478999999999999998877764 3999999999999999999987653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.81  E-value=1.5e-08  Score=87.38  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=50.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.|++.|++++...+.
T Consensus        62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~  120 (302)
T 3hem_A           62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV--NVIGLTLSENQYAHDKAMFDEVDS  120 (302)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEECCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCC
Confidence            44556666667889999999999999999998 75  999999999999999999987653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.80  E-value=5.7e-09  Score=85.20  Aligned_cols=56  Identities=16%  Similarity=0.216  Sum_probs=48.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~   97 (216)
T 3ofk_A           42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRWS   97 (216)
T ss_dssp             HHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTCS
T ss_pred             HHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccCC
Confidence            344455666678999999999999999999987  99999999999999999987643

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.80  E-value=1.4e-08  Score=85.64  Aligned_cols=59  Identities=14%  Similarity=0.221  Sum_probs=50.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ......+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.+++++..
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~   74 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD   74 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc
Confidence            34455666677666788999999999999999999986  999999999999999999864

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.80  E-value=1.9e-08  Score=86.28  Aligned_cols=58  Identities=19%  Similarity=0.183  Sum_probs=49.0

Q ss_pred             HHHHHhhc----CCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYL----KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l----~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+...+    ...++.+|||||||+|.++..+++. +.  +|+|+|+|+.|++.|++++...+
T Consensus        67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~  129 (297)
T 2o57_A           67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYNNQAG  129 (297)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC
Confidence            45555666    5566889999999999999999988 65  99999999999999999987654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.80  E-value=9.3e-09  Score=87.29  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=52.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +..+..+++.  +.+|||||||+|.++..+++.++..+|+|+|+++.+++.|++++...+..
T Consensus        12 L~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~   71 (244)
T 3gnl_A           12 LEKVASYITK--NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT   71 (244)
T ss_dssp             HHHHHTTCCS--SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhCCC--CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            4566667665  78999999999999999999986568999999999999999999887753

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.80  E-value=1.5e-08  Score=80.57  Aligned_cols=58  Identities=19%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.+...+. ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+
T Consensus        33 ~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~   91 (187)
T 2fhp_A           33 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITK   91 (187)
T ss_dssp             HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhC
Confidence            33444443 24578999999999999998888753 499999999999999999987654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.80  E-value=1.7e-08  Score=84.35  Aligned_cols=52  Identities=25%  Similarity=0.355  Sum_probs=45.2

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        36 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~   87 (252)
T 1wzn_A           36 EDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN   87 (252)
T ss_dssp             HTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HhcccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhcC
Confidence            33334578999999999999999999987  99999999999999999987654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.78  E-value=2.3e-08  Score=84.47  Aligned_cols=63  Identities=16%  Similarity=0.167  Sum_probs=51.5

Q ss_pred             HHHHHHHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          163 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       163 ~~~~~~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ......+...+. ..++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.|+++++..+.
T Consensus        31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~   94 (267)
T 3kkz_A           31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHV-TGQVTGLDFLSGFIDIFNRNARQSGL   94 (267)
T ss_dssp             HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTC-SSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            344555666665 4568899999999999999999983 35999999999999999999877653

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.78  E-value=1.3e-08  Score=85.62  Aligned_cols=60  Identities=10%  Similarity=0.237  Sum_probs=52.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +..+..+++.  +.+|||||||+|.++..+++.++..+|+|+|+++.+++.|++++...+..
T Consensus        12 L~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~   71 (230)
T 3lec_A           12 LQKVANYVPK--GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT   71 (230)
T ss_dssp             HHHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhCCC--CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            4556666665  78999999999999999999987668999999999999999999987753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.78  E-value=1.2e-08  Score=83.76  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||||||+|.++..+++..++.+|+|+|+|+.|++.|++++...+.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~   90 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV   90 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC
Confidence            47899999999999999999997666999999999999999999876653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.77  E-value=9.8e-09  Score=87.77  Aligned_cols=55  Identities=25%  Similarity=0.397  Sum_probs=46.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ...+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++.
T Consensus        46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~  100 (293)
T 3thr_A           46 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERW  100 (293)
T ss_dssp             HHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhh
Confidence            34455555545678999999999999999999987  99999999999999998863

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.77  E-value=3.1e-08  Score=81.69  Aligned_cols=49  Identities=12%  Similarity=0.203  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||+||| +|.++..+++. +.  +|+|+|+|+.|++.|++++...+.
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~  104 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNC--KVTATEVDEEFFEYARRNIERNNS  104 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCC--EEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHhCC
Confidence            358999999999 99999999998 55  999999999999999999987654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.77  E-value=3.3e-08  Score=82.62  Aligned_cols=63  Identities=13%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             HHHHHHHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          163 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       163 ~~~~~~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ......+...+. ..++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+.
T Consensus        31 ~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~   94 (257)
T 3f4k_A           31 PEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANC   94 (257)
T ss_dssp             HHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCC
Confidence            344455556553 34578999999999999999999975 3999999999999999999887654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.77  E-value=4.2e-09  Score=87.92  Aligned_cols=50  Identities=16%  Similarity=0.131  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCC-HHHHHHH---HHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQC---YEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S-~~ml~~A---~~~~~~~~~  226 (232)
                      ++.+|||||||+|.++..+++..++.+|+|||+| +.|++.|   ++++.+.+.
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~   77 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL   77 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999976555699999999 8888777   777766554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.76  E-value=1.1e-08  Score=85.21  Aligned_cols=48  Identities=23%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~~~  125 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVYGI  125 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence            578999999999999999999986  999999999999999999987653

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.76  E-value=1.3e-08  Score=86.92  Aligned_cols=58  Identities=7%  Similarity=0.117  Sum_probs=50.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .....+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++..
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~   73 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ   73 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh
Confidence            3445566677766788999999999999999999986  999999999999999999875

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.76  E-value=3.1e-08  Score=80.40  Aligned_cols=50  Identities=16%  Similarity=0.196  Sum_probs=44.4

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~   96 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFK   96 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGT
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence            34578999999999999999999865 379999999999999999988665

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.76  E-value=1.2e-08  Score=85.43  Aligned_cols=48  Identities=6%  Similarity=0.304  Sum_probs=43.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++++|||||||+|..+..+++... .+|+|||+|+.|++.|++++...+
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~  107 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT  107 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCS
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCC
Confidence            588999999999999999988754 389999999999999999987655

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.76  E-value=3.3e-08  Score=78.34  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ...+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus        22 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~   80 (192)
T 1l3i_A           22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGL   80 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence            34455556666788999999999999999999884  999999999999999999876643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.76  E-value=3.5e-08  Score=80.02  Aligned_cols=49  Identities=22%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+.
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~  108 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLGA-KSVLATDISDESMTAAEENAALNGI  108 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCC
Confidence            478999999999999999998754 5999999999999999999886654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.75  E-value=1.3e-08  Score=83.13  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=48.7

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +...+...++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.|++.|++++...+.
T Consensus        29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   87 (219)
T 3dh0_A           29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL   87 (219)
T ss_dssp             HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC
Confidence            4445555568899999999999999999986 445999999999999999999876553

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.75  E-value=1.2e-08  Score=84.64  Aligned_cols=46  Identities=28%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++++|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~  111 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSS  111 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTS
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhcc
Confidence            356999999999999999988776  9999999999999999998763

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.75  E-value=3.2e-08  Score=85.85  Aligned_cols=58  Identities=17%  Similarity=0.159  Sum_probs=50.0

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+. ..++.+|||||||+|.++..+++. +.  +|+|+|+|+.|++.|++++...+.
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~  165 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGVTLSAAQADFGNRRARELRI  165 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcCC
Confidence            45666666 566889999999999999999998 66  999999999999999999887653

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.75  E-value=1.6e-08  Score=84.52  Aligned_cols=50  Identities=14%  Similarity=0.008  Sum_probs=44.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||||||+|.++..++......+|+|+|+|+.|++.|++++...+.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  119 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL  119 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            57899999999999999999765556999999999999999999887654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.75  E-value=2.2e-08  Score=83.50  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=48.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~   67 (239)
T 1xxl_A           12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG   67 (239)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT
T ss_pred             hHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC
Confidence            344556666789999999999999999999987  99999999999999999987654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.75  E-value=1.9e-08  Score=82.99  Aligned_cols=50  Identities=18%  Similarity=0.183  Sum_probs=40.9

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...++.+|||+|||+|.++..+++....++|+|+|+|+.|++.+.+++++
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~  103 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE  103 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc
Confidence            34567899999999999999999885345999999999988776666553

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.75  E-value=3.6e-08  Score=85.48  Aligned_cols=58  Identities=22%  Similarity=0.322  Sum_probs=49.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.|++.|++++...+.
T Consensus        80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~  138 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASIDT  138 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSCC
T ss_pred             HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC
Confidence            44556666667889999999999999999988 76  999999999999999999887653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.75  E-value=1.3e-08  Score=85.13  Aligned_cols=55  Identities=25%  Similarity=0.331  Sum_probs=48.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ..+.+.++..++.+|||||||+|.++..+++.+.. +|+|+|+|+.|++.|++++.
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~   88 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT   88 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc
Confidence            45566677667899999999999999999999763 99999999999999999975

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.74  E-value=3.9e-08  Score=83.82  Aligned_cols=57  Identities=25%  Similarity=0.310  Sum_probs=48.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~-~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.+...++.+|||||||+|.++..+++ .+.  +|+|+|+|+.|++.|++++...+
T Consensus        54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~~~  111 (287)
T 1kpg_A           54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV--NVVGLTLSKNQANHVQQLVANSE  111 (287)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            4455666666788999999999999999984 465  99999999999999999988655

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.74  E-value=5e-08  Score=81.19  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++.
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~   99 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT   99 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc
Confidence            4578999999999999999999998  99999999999999999874

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.74  E-value=1.4e-08  Score=85.32  Aligned_cols=48  Identities=13%  Similarity=0.095  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++.+|||||||+|.++..+++.++..+|+|||+|+.|++.|++++...
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~   96 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIAL   96 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHH
Confidence            478999999999999999999987669999999999999999987654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.74  E-value=4.2e-08  Score=82.81  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|++++...+
T Consensus        51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~  108 (273)
T 3bus_A           51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG  108 (273)
T ss_dssp             HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC
Confidence            445566666678999999999999999999863 2499999999999999999987654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.74  E-value=1.4e-08  Score=86.64  Aligned_cols=48  Identities=25%  Similarity=0.278  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~~~  167 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKENL  167 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHcCC
Confidence            588999999999999999999987  999999999999999999887653

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.73  E-value=3.9e-08  Score=81.14  Aligned_cols=57  Identities=18%  Similarity=0.267  Sum_probs=48.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        60 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~  116 (231)
T 1vbf_A           60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYN  116 (231)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCS
T ss_pred             HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhcC
Confidence            3455556666788999999999999999999985  99999999999999999987654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.73  E-value=2.9e-08  Score=85.75  Aligned_cols=58  Identities=12%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ....+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~   73 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGT   73 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhc
Confidence            345566666666788999999999999999999987  9999999999999999998654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.73  E-value=5.1e-08  Score=81.68  Aligned_cols=62  Identities=24%  Similarity=0.334  Sum_probs=53.0

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ....+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|+++++..+.
T Consensus        81 ~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~  143 (255)
T 3mb5_A           81 DAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF  143 (255)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC
Confidence            3456666777777899999999999999999999 6556999999999999999999877654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.73  E-value=2.3e-08  Score=86.02  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=47.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+.+.+.. ++++|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        72 ~~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~  128 (299)
T 3g2m_A           72 AREFATRTGP-VSGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAP  128 (299)
T ss_dssp             HHHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcc
Confidence            3445555554 345999999999999999999987  99999999999999999988654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.72  E-value=1.5e-08  Score=85.13  Aligned_cols=46  Identities=13%  Similarity=0.134  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++.+|||||||+|.++..+++..++..|+|||+|+.|++.|++++.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~   91 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIR   91 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH
Confidence            4679999999999999999998766799999999999999998865

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.72  E-value=2.4e-08  Score=83.53  Aligned_cols=59  Identities=14%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ......+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.|++.|++++..
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~  100 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA--HTHGIDICSNIVNMANERVSG  100 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhhc
Confidence            344556666676667889999999999999999998 65  999999999999999998765

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.72  E-value=2.1e-08  Score=83.40  Aligned_cols=48  Identities=6%  Similarity=0.304  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~  107 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT  107 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCS
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcC
Confidence            578999999999999999987654 389999999999999999987544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.72  E-value=1.5e-08  Score=82.73  Aligned_cols=52  Identities=17%  Similarity=0.183  Sum_probs=44.6

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++.
T Consensus        37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~   88 (220)
T 3hnr_A           37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP   88 (220)
T ss_dssp             HHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC
T ss_pred             HHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC
Confidence            33334334688999999999999999999976  99999999999999999976

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.72  E-value=3.7e-08  Score=88.43  Aligned_cols=60  Identities=22%  Similarity=0.263  Sum_probs=52.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+.+.++..++++|||+|||+|.++..+++.++..+|+|+|+|+.|++.|++++...+
T Consensus       211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ng  270 (375)
T 4dcm_A          211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM  270 (375)
T ss_dssp             HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcC
Confidence            455677777766799999999999999999999766699999999999999999988765

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.72  E-value=2.8e-08  Score=82.55  Aligned_cols=53  Identities=11%  Similarity=0.186  Sum_probs=44.9

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .+...++.+|||+|||+|.++..+++....++|+|+|+|+.|++.|++++...
T Consensus        69 ~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~  121 (230)
T 1fbn_A           69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER  121 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC
T ss_pred             ccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC
Confidence            34445678999999999999999999842459999999999999999998754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.71  E-value=4.3e-08  Score=80.20  Aligned_cols=55  Identities=33%  Similarity=0.670  Sum_probs=46.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.++.  +.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        30 ~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~   84 (227)
T 1ve3_A           30 PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE   84 (227)
T ss_dssp             HHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            344555544  78999999999999999999988  99999999999999999986543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.71  E-value=6.4e-08  Score=78.27  Aligned_cols=54  Identities=20%  Similarity=0.261  Sum_probs=45.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+...+  .++.+|||+|||+|.++..+++.+.. +|+|+|+|+.|++.|++++..
T Consensus        34 ~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~   87 (215)
T 2pxx_A           34 ALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH   87 (215)
T ss_dssp             HHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT
T ss_pred             HHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc
Confidence            3344444  34789999999999999999999763 899999999999999999864

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.70  E-value=2.8e-08  Score=82.76  Aligned_cols=59  Identities=19%  Similarity=0.137  Sum_probs=48.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+...++.+|||||||+|..+..+++..+..+|+|+|+|+.|++.|++++...+.
T Consensus        62 ~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  120 (232)
T 3ntv_A           62 LIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF  120 (232)
T ss_dssp             HHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            33333333457899999999999999999965556999999999999999999987664

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.70  E-value=1.2e-08  Score=83.58  Aligned_cols=47  Identities=21%  Similarity=0.256  Sum_probs=40.0

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ..++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.+.+++
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a   71 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKA   71 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHH
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            44588999999999999999999965569999999999999754443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.70  E-value=4e-08  Score=85.78  Aligned_cols=60  Identities=17%  Similarity=0.249  Sum_probs=50.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+...++.+|||||||+|.++..+++.+. .++|+|+|+|+.|++.|++++...+.
T Consensus        65 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~  125 (317)
T 1dl5_A           65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI  125 (317)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3455566666789999999999999999999876 35799999999999999999876654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.70  E-value=3.6e-08  Score=83.46  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=48.7

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.......++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.|++++...+.
T Consensus        29 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   86 (276)
T 3mgg_A           29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI   86 (276)
T ss_dssp             HHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3333444568899999999999999999996666999999999999999999876654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.70  E-value=2.9e-08  Score=85.75  Aligned_cols=58  Identities=19%  Similarity=0.136  Sum_probs=47.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|++++...+.
T Consensus       114 ~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l  171 (284)
T 1nv8_A          114 LALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV  171 (284)
T ss_dssp             HHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3344443224679999999999999999999 455999999999999999999987654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.70  E-value=3.6e-08  Score=79.33  Aligned_cols=51  Identities=20%  Similarity=0.317  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||+|||+|.++..+++. ++.++|+|+|+|+.|++.|++++...+.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   72 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL   72 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            34789999999999999999988 4445999999999999999999887543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.69  E-value=3e-08  Score=81.93  Aligned_cols=47  Identities=19%  Similarity=0.300  Sum_probs=43.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~~   83 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG   83 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhcC
Confidence            578999999999999999999987  99999999999999999987644

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.69  E-value=4e-08  Score=79.92  Aligned_cols=52  Identities=23%  Similarity=0.367  Sum_probs=44.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +..+...++  ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++
T Consensus        34 ~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           34 LTKFLGELP--AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             HHHHHTTSC--TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc
Confidence            344444444  478999999999999999999977  9999999999999999986

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.69  E-value=3e-08  Score=83.26  Aligned_cols=50  Identities=12%  Similarity=0.010  Sum_probs=43.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..++......+|+|+|+|+.|++.|++++...+.
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~  114 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL  114 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            46799999999999999888874334999999999999999999886553

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.69  E-value=2.8e-08  Score=86.45  Aligned_cols=58  Identities=14%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~   88 (299)
T 2h1r_A           31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEG   88 (299)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC
Confidence            44555566666788999999999999999999876  99999999999999999986543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.68  E-value=5.7e-08  Score=83.55  Aligned_cols=61  Identities=18%  Similarity=0.309  Sum_probs=49.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ......+..... .++.+|||||||+|.++..+++.. ...+|+|+|+|+.|++.|++++...
T Consensus        23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~   84 (299)
T 3g5t_A           23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS   84 (299)
T ss_dssp             HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            344455555544 368999999999999999999752 4459999999999999999998764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.68  E-value=5.5e-08  Score=78.76  Aligned_cols=59  Identities=24%  Similarity=0.235  Sum_probs=47.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ...+.+.+...++ +|||+|||+|.++..+++. ...+|+|+|+|+.|++.|++++...+.
T Consensus        33 ~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~   91 (219)
T 3dlc_A           33 AENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANL   91 (219)
T ss_dssp             HHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccc
Confidence            3445555555434 9999999999999999998 334999999999999999999887653

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.68  E-value=5.1e-08  Score=83.50  Aligned_cols=51  Identities=20%  Similarity=0.173  Sum_probs=45.6

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||+|||+|.++..+++.+..++|+|+|+|+.|++.|+++++.++.
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l  168 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL  168 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            357899999999999999999986556999999999999999999987664

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.68  E-value=4.7e-08  Score=79.76  Aligned_cols=58  Identities=16%  Similarity=0.211  Sum_probs=48.3

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+.+.+...++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.|++.|++++...+
T Consensus        68 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  126 (215)
T 2yxe_A           68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG  126 (215)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            34445555678899999999999999999985 33599999999999999999987654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.68  E-value=2.1e-08  Score=79.67  Aligned_cols=52  Identities=17%  Similarity=0.247  Sum_probs=41.0

Q ss_pred             cHHHHHHHHhhcCC--CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825          162 PEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ  216 (232)
Q Consensus       162 ~~~~~~~l~~~l~~--~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~  216 (232)
                      |....+.+.+.+..  .++++|||+|||+|.++..+++.+   +|+|+|+|+.|++.
T Consensus         6 P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~   59 (170)
T 3q87_B            6 PGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES   59 (170)
T ss_dssp             CCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT
T ss_pred             cCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc
Confidence            33333444444433  457899999999999999999987   89999999999987

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.68  E-value=1e-08  Score=86.12  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=40.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ..+.+|||||||+|.++..+++.|. .+|+|+|+|++|++.|+++..
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~   81 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDE   81 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCT
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCc
Confidence            3467999999999999999999974 399999999999999888644

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.68  E-value=4.1e-08  Score=84.30  Aligned_cols=56  Identities=21%  Similarity=0.148  Sum_probs=47.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+.  ++.+|||+|||+|.++..+++.+.. +|+|+|+|+.|++.|++++..++.
T Consensus       118 ~l~~~~~--~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~  173 (278)
T 2frn_A          118 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKV  173 (278)
T ss_dssp             HHHHHCC--TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCC--CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCC
Confidence            3444443  3889999999999999999999873 799999999999999999987654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.67  E-value=2.1e-08  Score=87.44  Aligned_cols=48  Identities=15%  Similarity=0.162  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||||||+|..+..++..+. .+|+|+|+|+.||+.|++++.+.+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~-~~v~GiD~S~~~l~~A~~~~~~~~   95 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEI-ALLVATDPDADAIARGNERYNKLN   95 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHhcc
Confidence            478999999999976666555542 399999999999999999987543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.67  E-value=3.8e-08  Score=82.85  Aligned_cols=44  Identities=27%  Similarity=0.375  Sum_probs=41.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~   93 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNP   93 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCC
Confidence            368999999999999999999987  99999999999999999865

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.67  E-value=5e-08  Score=79.99  Aligned_cols=54  Identities=24%  Similarity=0.423  Sum_probs=46.5

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +...++  ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+.
T Consensus        24 ~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~   77 (235)
T 3sm3_A           24 IHNYLQ--EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGL   77 (235)
T ss_dssp             HHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSC
T ss_pred             HHHhCC--CCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCC
Confidence            344444  478999999999999999999977  999999999999999999886553

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.67  E-value=2.7e-08  Score=88.23  Aligned_cols=49  Identities=18%  Similarity=0.348  Sum_probs=43.2

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+| .|++.|++++...+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~-~~v~gvD~s-~~l~~a~~~~~~~~~  113 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECS-SISDYAVKIVKANKL  113 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTC-SEEEEEECS-THHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCC-CEEEEECcH-HHHHHHHHHHHHcCC
Confidence            3578999999999999999999964 599999999 599999999987654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.67  E-value=2.8e-08  Score=80.50  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++...+.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  114 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL  114 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            37899999999999999999985556999999999999999999886653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.67  E-value=3.5e-08  Score=85.98  Aligned_cols=58  Identities=9%  Similarity=0.122  Sum_probs=50.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .....+.+.+...++.+|||||||+|.++..+++.+.  +|+|||+++.|++.+++++..
T Consensus        37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~   94 (295)
T 3gru_A           37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL   94 (295)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc
Confidence            3345566667766788999999999999999999976  999999999999999999863

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.67  E-value=6e-08  Score=83.00  Aligned_cols=52  Identities=21%  Similarity=0.240  Sum_probs=44.9

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.|++.|++++...+
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~   71 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP   71 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            445688999999999999999999843 2599999999999999999987644

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.66  E-value=3.8e-08  Score=83.22  Aligned_cols=58  Identities=21%  Similarity=0.361  Sum_probs=48.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHH------HHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN------MLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~------ml~~A~~~~~~~~  225 (232)
                      .+.+.+...++.+|||||||+|.++..+++. ++..+|+|+|+|+.      |++.|++++...+
T Consensus        34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~   98 (275)
T 3bkx_A           34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP   98 (275)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC
Confidence            4455556667899999999999999999998 55569999999998      9999999987654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.66  E-value=2.8e-08  Score=80.96  Aligned_cols=51  Identities=18%  Similarity=0.291  Sum_probs=43.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++
T Consensus        43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           43 AILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             HHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh
Confidence            344444444579999999999999999999977  999999999999999987

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.66  E-value=5.6e-08  Score=78.60  Aligned_cols=47  Identities=21%  Similarity=0.271  Sum_probs=41.6

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++.
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~   95 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCG   95 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhcC
Confidence            34578999999999999999998854 379999999999999999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.66  E-value=5.3e-08  Score=85.04  Aligned_cols=59  Identities=22%  Similarity=0.260  Sum_probs=49.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.+...++++|||+|||+|.++..+++....++|+|+|+|+.|++.|++++...+
T Consensus        16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g   74 (301)
T 1m6y_A           16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS   74 (301)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT
T ss_pred             HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            34445666667899999999999999999998544599999999999999999998754

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.66  E-value=9.4e-08  Score=78.46  Aligned_cols=51  Identities=18%  Similarity=0.079  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||||||+|..+..+++..+ +++|+|+|+++.|++.|++++...+.
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  108 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL  108 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            4578999999999999999999843 45999999999999999999987664

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.66  E-value=2.8e-08  Score=82.03  Aligned_cols=46  Identities=13%  Similarity=0.171  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .++.+|||||||+|.++..+++.++  +|+|+|+|+.|++.|++++..
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~   86 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD   86 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC
Confidence            3577999999999999999999987  899999999999999998753

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.66  E-value=2.9e-08  Score=85.61  Aligned_cols=49  Identities=18%  Similarity=0.262  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||||||+|.++..+++.....+|+|+|+|+.|++.|++++...+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~   94 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYL   94 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhh
Confidence            5789999999999999999999444599999999999999999987654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.66  E-value=7.1e-08  Score=82.30  Aligned_cols=59  Identities=17%  Similarity=0.117  Sum_probs=48.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.+...+. .++.+|||+|||+|.++..++...+..+|+|+|+|+.|++.|++++...+.
T Consensus       100 ~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~  158 (276)
T 2b3t_A          100 EQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI  158 (276)
T ss_dssp             HHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            44445554 357899999999999999999875556999999999999999999876553

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.66  E-value=6e-08  Score=81.09  Aligned_cols=45  Identities=18%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~   81 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKI   81 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh
Confidence            34578999999999999999999876  9999999999999999997

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.66  E-value=5.5e-08  Score=80.87  Aligned_cols=58  Identities=14%  Similarity=0.169  Sum_probs=48.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+++.+++.|++++...+.
T Consensus        82 ~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~  139 (235)
T 1jg1_A           82 IMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV  139 (235)
T ss_dssp             HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            344455556688999999999999999999863 4999999999999999999876553

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.65  E-value=5.8e-08  Score=81.86  Aligned_cols=52  Identities=29%  Similarity=0.406  Sum_probs=44.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ..+...++  ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++..
T Consensus        46 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           46 SFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             HHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC
T ss_pred             HHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC
Confidence            34444554  578999999999999999999976  99999999999999999865

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.64  E-value=5.2e-08  Score=81.40  Aligned_cols=54  Identities=15%  Similarity=0.197  Sum_probs=45.1

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      .+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++.
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~   77 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL   77 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence            344555556688999999999999999999843349999999999999999883

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.64  E-value=6.9e-08  Score=79.83  Aligned_cols=42  Identities=24%  Similarity=0.347  Sum_probs=39.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~   89 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARAN   89 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHh
Confidence            478999999999999999999976  999999999999999998

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.64  E-value=4.6e-08  Score=84.49  Aligned_cols=56  Identities=11%  Similarity=0.194  Sum_probs=46.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHh
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~--~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ...+.+.+...++.+|||||||+|.++..+++.+..  ++|+|+|+|+.|++.++++.
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~   88 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF   88 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc
Confidence            445566666667889999999999999999998761  22999999999999999984

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.64  E-value=6.7e-08  Score=79.86  Aligned_cols=56  Identities=34%  Similarity=0.479  Sum_probs=47.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+...++..++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++..
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~   88 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD   88 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc
Confidence            3456667666788999999999999999999865 3899999999999999998754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.64  E-value=6e-08  Score=88.49  Aligned_cols=59  Identities=15%  Similarity=0.205  Sum_probs=50.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ...+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++..++.
T Consensus       275 ~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~  333 (433)
T 1uwv_A          275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGL  333 (433)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCC
Confidence            34455566655678999999999999999999865  999999999999999999987654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.63  E-value=5.5e-08  Score=80.46  Aligned_cols=52  Identities=25%  Similarity=0.476  Sum_probs=45.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ...+...++.  +.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++.
T Consensus        44 ~~~l~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~   95 (242)
T 3l8d_A           44 IPFFEQYVKK--EAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERG   95 (242)
T ss_dssp             HHHHHHHSCT--TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTT
T ss_pred             HHHHHHHcCC--CCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhc
Confidence            4555556654  78999999999999999999977  9999999999999999885

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.63  E-value=1.5e-07  Score=78.63  Aligned_cols=59  Identities=24%  Similarity=0.247  Sum_probs=50.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ...+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|++++...
T Consensus        85 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~  144 (258)
T 2pwy_A           85 ASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF  144 (258)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            345666666667899999999999999999998 54569999999999999999998765

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.63  E-value=4.4e-08  Score=82.26  Aligned_cols=56  Identities=18%  Similarity=0.134  Sum_probs=45.1

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~--g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      +.+.+...++.+|||+|||+|.++..+++.  ....+|+|+|+|+.|++.|++++...
T Consensus        43 ~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           43 ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            333444345689999999999999999987  33349999999999999999988754

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.63  E-value=4.2e-08  Score=84.43  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=49.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .....+.+.+...++ +|||||||+|.++..+++.+.  +|+|+|+++.|++.+++++..
T Consensus        34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~   90 (271)
T 3fut_A           34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSG   90 (271)
T ss_dssp             HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTT
T ss_pred             HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCC
Confidence            344556666666667 999999999999999999986  999999999999999999863

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.63  E-value=6.4e-08  Score=82.37  Aligned_cols=51  Identities=27%  Similarity=0.479  Sum_probs=44.2

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++
T Consensus        49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~   99 (279)
T 3ccf_A           49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA--EVLGTDNAATMIEKARQNY   99 (279)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHhhC
Confidence            34455555688999999999999999999665  9999999999999999886

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.63  E-value=2.7e-08  Score=80.34  Aligned_cols=43  Identities=19%  Similarity=0.337  Sum_probs=40.3

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~   84 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQTHP   84 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHHCT
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHhCC
Confidence            78999999999999999999987  99999999999999999854

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.63  E-value=5.7e-08  Score=82.56  Aligned_cols=55  Identities=15%  Similarity=0.069  Sum_probs=47.9

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      +..++...++.+|||+|||+|.++..++.+.+..+|+|+|+++.|++.|++++..
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~   82 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLEL   82 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTS
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHh
Confidence            4445555567899999999999999999997656999999999999999999886

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.63  E-value=2.2e-08  Score=84.58  Aligned_cols=53  Identities=28%  Similarity=0.316  Sum_probs=44.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ..+.+.++..++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++.
T Consensus        24 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~   76 (261)
T 3ege_A           24 NAIINLLNLPKGSVIADIGAGTGGYSVALANQGL--FVYAVEPSIVMRQQAVVHP   76 (261)
T ss_dssp             HHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC--EEEEECSCHHHHHSSCCCT
T ss_pred             HHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcc
Confidence            4455566656789999999999999999999776  9999999999999887764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.62  E-value=6.8e-08  Score=81.64  Aligned_cols=57  Identities=16%  Similarity=0.254  Sum_probs=48.3

Q ss_pred             HHhhcCCC-CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~-~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +..++... ++.+|||+|||+|.++..+++++. .+|+|+|+++.|++.|++++...+.
T Consensus        40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~   97 (259)
T 3lpm_A           40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQL   97 (259)
T ss_dssp             HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCC
Confidence            33445555 688999999999999999999975 3999999999999999999987654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.62  E-value=4.9e-08  Score=82.68  Aligned_cols=48  Identities=21%  Similarity=0.287  Sum_probs=44.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++.|.  +|+|+|+|+.|++.|++++...+.
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~  167 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGV  167 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC
Confidence            478999999999999999999987  999999999999999999887653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.62  E-value=7.2e-08  Score=80.32  Aligned_cols=55  Identities=13%  Similarity=0.086  Sum_probs=46.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+...+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++..
T Consensus        84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~  138 (254)
T 1xtp_A           84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG  138 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT
T ss_pred             HHHHhhcccCCCEEEEECCCcCHHHHHHHHhhc-CEEEEEeCCHHHHHHHHHHhcc
Confidence            344455555688999999999999999998863 4899999999999999999864

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.62  E-value=6.3e-08  Score=78.10  Aligned_cols=45  Identities=27%  Similarity=0.318  Sum_probs=41.2

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      + +|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus        31 ~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~   75 (202)
T 2kw5_A           31 G-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEKG   75 (202)
T ss_dssp             S-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHT
T ss_pred             C-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcC
Confidence            5 999999999999999999877  99999999999999999986543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.62  E-value=1.9e-08  Score=85.40  Aligned_cols=50  Identities=14%  Similarity=0.326  Sum_probs=42.0

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ...++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|+++++..
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~  101 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcC
Confidence            344678999999999988887777775 37999999999999999987654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.61  E-value=8.9e-08  Score=79.09  Aligned_cols=54  Identities=28%  Similarity=0.447  Sum_probs=45.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.++.  +.+|||+|||+|.++..+++. .  +|+|+|+|+.|++.|++++...+
T Consensus        25 ~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~-~--~v~~vD~s~~~~~~a~~~~~~~~   78 (243)
T 3d2l_A           25 AWVLEQVEP--GKRIADIGCGTGTATLLLADH-Y--EVTGVDLSEEMLEIAQEKAMETN   78 (243)
T ss_dssp             HHHHHHSCT--TCEEEEESCTTCHHHHHHTTT-S--EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCC--CCeEEEecCCCCHHHHHHhhC-C--eEEEEECCHHHHHHHHHhhhhcC
Confidence            344555554  689999999999999999888 4  99999999999999999987543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.61  E-value=9.8e-08  Score=78.68  Aligned_cols=50  Identities=14%  Similarity=0.249  Sum_probs=43.9

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ..++.+|||+|||+|.++..+++. ++.++|+|+|+|+.|++.++++++..
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~  121 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER  121 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc
Confidence            456789999999999999999987 54459999999999999999988754

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.61  E-value=7.4e-08  Score=79.09  Aligned_cols=51  Identities=12%  Similarity=0.074  Sum_probs=44.6

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||||||+|..+..+++..+ .++|+|+|+|+.|++.|+++++..+.
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  114 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL  114 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            3478999999999999999999732 45999999999999999999987664

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.61  E-value=8.1e-08  Score=84.82  Aligned_cols=48  Identities=17%  Similarity=0.043  Sum_probs=44.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++.|.  +|+|||+|+.|++.|++++...+.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl  200 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGL  200 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence            467999999999999999999887  999999999999999999987654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.61  E-value=7.2e-08  Score=78.23  Aligned_cols=50  Identities=22%  Similarity=0.341  Sum_probs=42.4

Q ss_pred             HHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       168 ~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .+.+.+. ..++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~   86 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGR   86 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGG
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHh
Confidence            3444443 34567999999999999999999977  99999999999999998

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.60  E-value=2.5e-07  Score=76.63  Aligned_cols=60  Identities=15%  Similarity=0.127  Sum_probs=48.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+.
T Consensus        44 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  103 (233)
T 2gpy_A           44 ESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL  103 (233)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            334444444457899999999999999999985445999999999999999999886653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.60  E-value=6.5e-08  Score=79.72  Aligned_cols=51  Identities=4%  Similarity=-0.032  Sum_probs=44.2

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||||||+|..+..+++.. .+++|+|+|+|+.|++.|++++...+.
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  108 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL  108 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC
Confidence            357899999999999999999862 245999999999999999999887654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.60  E-value=2e-07  Score=78.48  Aligned_cols=49  Identities=12%  Similarity=0.133  Sum_probs=40.6

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ...++.+|||+|||+|.++..+++. +..++|+|+|+|+.|++...+.+.
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~  122 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ  122 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh
Confidence            3567899999999999999999987 556799999999999765554443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.60  E-value=2.1e-07  Score=73.84  Aligned_cols=44  Identities=25%  Similarity=0.424  Sum_probs=41.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~~   89 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQDFP   89 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHhCC
Confidence            478999999999999999999976  99999999999999999864

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.59  E-value=1.1e-07  Score=81.05  Aligned_cols=57  Identities=16%  Similarity=0.144  Sum_probs=46.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|++++...
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~  158 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF  158 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhc
Confidence            4555566667889999999999999999998 44459999999999999999999766

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.59  E-value=1.5e-07  Score=77.35  Aligned_cols=50  Identities=22%  Similarity=0.431  Sum_probs=43.8

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ..++.+|||+|||+|.++..+++. +...+|+|+|+|+.|++.|++++...
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~  125 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD  125 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh
Confidence            345789999999999999999987 54459999999999999999998764

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.59  E-value=1.3e-07  Score=78.57  Aligned_cols=58  Identities=9%  Similarity=0.060  Sum_probs=46.6

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +....+..++.+|||||||+|..+..+++. ..+++|+++|+|+.|++.|+++++..+.
T Consensus        48 l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~  106 (221)
T 3dr5_A           48 LAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY  106 (221)
T ss_dssp             HHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            333333333459999999999999999986 3356999999999999999999987664

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.59  E-value=1.2e-07  Score=86.67  Aligned_cols=60  Identities=10%  Similarity=-0.020  Sum_probs=49.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHH-------HHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A-------~~~~~~~~  225 (232)
                      ...+.+.+...++.+|||||||+|.++..+++.....+|+|||+|+.|++.|       ++++...+
T Consensus       231 v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G  297 (433)
T 1u2z_A          231 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG  297 (433)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC
Confidence            4455566666678999999999999999999974324899999999999999       88877655

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.59  E-value=1.1e-07  Score=85.17  Aligned_cols=57  Identities=19%  Similarity=0.275  Sum_probs=48.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+...++.+|||||||+|.++..+++.|. .+|+|+|+| .|++.|+++++..+.
T Consensus        54 ~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~~  110 (376)
T 3r0q_C           54 AVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANNL  110 (376)
T ss_dssp             HHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTTC
T ss_pred             HHHhccccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcCC
Confidence            344444556689999999999999999999975 499999999 999999999987654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.59  E-value=4.9e-08  Score=86.18  Aligned_cols=60  Identities=22%  Similarity=0.360  Sum_probs=51.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+.+.+...++++|||+|||+|.++..+++.++..+|+|+|+|+.|++.|++++...+
T Consensus       185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~  244 (343)
T 2pjd_A          185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG  244 (343)
T ss_dssp             HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence            455666665545789999999999999999999876699999999999999999987654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.58  E-value=6.2e-08  Score=80.53  Aligned_cols=43  Identities=26%  Similarity=0.509  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHTT
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHhh
Confidence            3468999999999999999999987  899999999999999986

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.58  E-value=1.2e-07  Score=77.28  Aligned_cols=49  Identities=18%  Similarity=0.172  Sum_probs=43.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||||||+|..+..+++... +.+|+|+|+|+.|++.|+++++..+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  105 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG  105 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC
Confidence            468999999999999999998843 4699999999999999999987654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.58  E-value=9.8e-08  Score=80.39  Aligned_cols=51  Identities=12%  Similarity=0.045  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||||||+|..+..+++..+ .++|+|+|+|+.|++.|++++...+.
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~  113 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV  113 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3578999999999999999999843 46999999999999999999987654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.58  E-value=2.5e-07  Score=78.87  Aligned_cols=60  Identities=23%  Similarity=0.282  Sum_probs=51.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.|++++...+
T Consensus       101 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  161 (277)
T 1o54_A          101 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG  161 (277)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC
Confidence            345666667667889999999999999999998 655699999999999999999987654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.58  E-value=1.2e-07  Score=78.07  Aligned_cols=44  Identities=25%  Similarity=0.395  Sum_probs=41.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++.
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~   83 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLP   83 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCC
Confidence            478999999999999999999987  99999999999999999863

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.57  E-value=9.5e-08  Score=82.07  Aligned_cols=56  Identities=21%  Similarity=0.291  Sum_probs=45.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHhh
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQ  222 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~-S~~ml~~A~~~~~  222 (232)
                      .+.+.......++.+|||+|||+|.++..+++.+. .+|+|+|+ |+.|++.|++++.
T Consensus        68 ~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~-~~v~~~D~s~~~~~~~a~~n~~  124 (281)
T 3bzb_A           68 ADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGA-DQVVATDYPDPEILNSLESNIR  124 (281)
T ss_dssp             HHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTC-SEEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHhcchhcCCCeEEEecccccHHHHHHHHcCC-CEEEEEeCCCHHHHHHHHHHHH
Confidence            34444444334578999999999999999998874 48999999 8999999999983

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.57  E-value=1.4e-07  Score=83.33  Aligned_cols=57  Identities=25%  Similarity=0.412  Sum_probs=46.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+.+...++.+|||||||+|.++..+++.|. .+|+|+|+|+ |++.|+++++..+.
T Consensus        55 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~v~gvD~s~-~~~~a~~~~~~~~~  111 (340)
T 2fyt_A           55 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSE-ILYQAMDIIRLNKL  111 (340)
T ss_dssp             HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESST-HHHHHHHHHHHTTC
T ss_pred             HHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC-CEEEEEChHH-HHHHHHHHHHHcCC
Confidence            344444445688999999999999999999864 4999999996 99999999876553

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.57  E-value=1.3e-07  Score=84.50  Aligned_cols=59  Identities=17%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.... ..++.+|||+|||+|.++..++..+..++|+|+|+|+.|++.|++++...+.
T Consensus       208 ~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl  266 (373)
T 3tm4_A          208 NAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV  266 (373)
T ss_dssp             HHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            3344444 4568899999999999999999998756899999999999999999987664

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.56  E-value=3.6e-08  Score=77.37  Aligned_cols=46  Identities=22%  Similarity=0.353  Sum_probs=41.7

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh
Confidence            3444578999999999999999999986  999999999999999998

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.56  E-value=1.8e-07  Score=84.50  Aligned_cols=48  Identities=19%  Similarity=0.137  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..++..|.  .|+|+|+|+.|++.|++++..++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~  261 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGL  261 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCC
Confidence            488999999999999999999987  799999999999999999987664

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.56  E-value=2.3e-07  Score=76.34  Aligned_cols=51  Identities=22%  Similarity=0.311  Sum_probs=44.5

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g-----~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..++.+|||||||+|.++..+++..     +..+|+|+|+++.|++.|++++...+
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  133 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK  133 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            3457899999999999999999985     34599999999999999999987654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.55  E-value=1.4e-07  Score=78.42  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.|++++...
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~  125 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEE  125 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhc
Confidence            57899999999999999998886 359999999999999999998764

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.55  E-value=2e-07  Score=84.73  Aligned_cols=56  Identities=13%  Similarity=0.004  Sum_probs=46.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +..+.+.+...++.+|||||||+|.++..++......+|+|||+|+.|++.|++++
T Consensus       162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~  217 (438)
T 3uwp_A          162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMD  217 (438)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence            45566667777899999999999999999987633236999999999999998864

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.55  E-value=1.7e-07  Score=82.97  Aligned_cols=64  Identities=20%  Similarity=0.047  Sum_probs=53.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.....+...+...++.+|||+|||+|.++..++..+ +..+|+|+|+|+.|++.|++++...+.
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~  253 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL  253 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC
Confidence            3344555566666678899999999999999999986 455999999999999999999987764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.55  E-value=6.3e-08  Score=87.04  Aligned_cols=49  Identities=27%  Similarity=0.390  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++++|||||||+|.++..+++.|+ .+|+|||.|+ |++.|++.++.++..
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~~~  131 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNGLE  131 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTTCT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcCCC
Confidence            578999999999999999999987 4899999996 999999998877653

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.55  E-value=1.6e-07  Score=75.84  Aligned_cols=46  Identities=24%  Similarity=0.439  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCCcChH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~-~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++.+|||+|||+|.+ ...+++.+.  +|+|+|+|+.|++.|++++...
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~   69 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSREN   69 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTC--EEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhc
Confidence            478999999999987 556666666  9999999999999999997654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.53  E-value=2.4e-07  Score=82.74  Aligned_cols=58  Identities=19%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ...+.+.+... +.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++..++.
T Consensus       203 ~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~ng~  260 (369)
T 3bt7_A          203 LEWALDVTKGS-KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANHI  260 (369)
T ss_dssp             HHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence            34445555442 57899999999999999998765  999999999999999999987664

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.53  E-value=1.5e-07  Score=78.39  Aligned_cols=59  Identities=17%  Similarity=0.094  Sum_probs=47.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+...++.+|||||||+|..+..+++... ..+|+|+|+++.+++.|++++...+.
T Consensus        51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~  110 (239)
T 2hnk_A           51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL  110 (239)
T ss_dssp             HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            333333334578999999999999999999843 45999999999999999999876553

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.53  E-value=2.6e-07  Score=79.26  Aligned_cols=47  Identities=13%  Similarity=0.053  Sum_probs=41.2

Q ss_pred             CCCeEEEEcCCc---ChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGS---GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGt---G~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...+|||||||+   |.++..+.+..++.+|+|+|+|+.|++.|++++..
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~  126 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK  126 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC
Confidence            357999999999   99888887776666999999999999999999854

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.52  E-value=9.2e-08  Score=93.24  Aligned_cols=58  Identities=16%  Similarity=0.277  Sum_probs=48.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...+.+.+...++.+|||||||+|.++..+++.+ ...+|+|||+|+.|++.|++++..
T Consensus       710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~  768 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHV  768 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhh
Confidence            3445555554568999999999999999999997 334999999999999999997764

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.52  E-value=5.6e-08  Score=81.36  Aligned_cols=51  Identities=20%  Similarity=0.388  Sum_probs=44.2

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +..++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~  103 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEP  103 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCT
T ss_pred             cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCC
Confidence            334578999999999999999988875 589999999999999999987643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.52  E-value=2.6e-07  Score=83.12  Aligned_cols=49  Identities=20%  Similarity=0.178  Sum_probs=44.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++.|. .+|+|+|+|+.|++.|++++..++.
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~-~~V~~vD~s~~al~~a~~n~~~ngl  268 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELNKL  268 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCC
Confidence            578999999999999999999863 4999999999999999999987654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.52  E-value=2.7e-07  Score=80.94  Aligned_cols=58  Identities=16%  Similarity=0.286  Sum_probs=49.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...+...+...++.+|||+|||+|.++..+++. |+..+|+|+|+++.|++.|++++..
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~  152 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH  152 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Confidence            344555566667899999999999999999998 6656999999999999999999875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.52  E-value=1.5e-07  Score=83.31  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=46.9

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|+++++..+.
T Consensus        41 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~l   97 (348)
T 2y1w_A           41 AILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA-RKIYAVEAST-MAQHAEVLVKSNNL   97 (348)
T ss_dssp             HHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-HHHHHHHHHHHTTC
T ss_pred             HHHhccccCCcCEEEEcCCCccHHHHHHHhCCC-CEEEEECCHH-HHHHHHHHHHHcCC
Confidence            444455555688999999999999999999864 5999999996 99999999876653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.51  E-value=3.2e-07  Score=76.06  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=42.8

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      +...++.+|||+|||+|.++..+++. ++.++|+|+|+|+.|++.+.++++..
T Consensus        73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~  125 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR  125 (233)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC
T ss_pred             ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc
Confidence            33456789999999999999999988 44459999999999888887777653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.51  E-value=6.6e-08  Score=82.07  Aligned_cols=55  Identities=11%  Similarity=0.289  Sum_probs=46.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ....+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.++++
T Consensus        19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPL-KKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCC-SEEEEECCCHHHHHHHTTS
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCC-CeEEEEECCHHHHHHHHhc
Confidence            345566667766788999999999999999999852 3999999999999999987

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.51  E-value=3.5e-07  Score=75.93  Aligned_cols=57  Identities=12%  Similarity=0.111  Sum_probs=49.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+
T Consensus        81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~  137 (248)
T 2yvl_A           81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAG--EVWTFEAVEEFYKTAQKNLKKFN  137 (248)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcC
Confidence            4556666666788999999999999999999854  99999999999999999987654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.51  E-value=8.4e-08  Score=82.10  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ++.+|||||||+|.+...++.. +.  +|+|+|+|+.|++.|++++.+
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~--~v~gvD~s~~~l~~a~~~~~~  116 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQE  116 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCcChHHHHhhccCCC--eEEEeCCCHHHHHHHHHHHhh
Confidence            5789999999999965544443 44  999999999999999997754

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.51  E-value=2.5e-07  Score=78.65  Aligned_cols=48  Identities=17%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++...+
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~  111 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMK  111 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC
Confidence            478999999999999999988863 499999999999999999987654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.51  E-value=3.3e-07  Score=77.76  Aligned_cols=59  Identities=14%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ...+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|++++...
T Consensus        88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  147 (280)
T 1i9g_A           88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC  147 (280)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            345566666667889999999999999999986 44459999999999999999998765

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.50  E-value=2.8e-07  Score=82.92  Aligned_cols=48  Identities=19%  Similarity=0.265  Sum_probs=44.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~~  279 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANA  279 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC
Confidence            3578999999999999999999976  99999999999999999998655

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.50  E-value=8.9e-08  Score=81.47  Aligned_cols=56  Identities=5%  Similarity=0.138  Sum_probs=44.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...+.+.+...++.+|||||||+|.++. +++ +...+|+|+|+++.|++.+++++..
T Consensus        10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~   65 (252)
T 1qyr_A           10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL   65 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT
T ss_pred             HHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc
Confidence            3455556666668899999999999999 754 5512299999999999999998754

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.49  E-value=2.4e-07  Score=83.33  Aligned_cols=49  Identities=12%  Similarity=0.125  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++..++.
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n~~  260 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHL  260 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCC
Confidence            478999999999999999998764 3899999999999999999987764

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.47  E-value=2.8e-07  Score=75.84  Aligned_cols=51  Identities=12%  Similarity=-0.007  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||+|||+|..+..+++... ..+|+++|+++.|++.|++++...+.
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~  119 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA  119 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC
Confidence            4578999999999999999998733 45999999999999999999887653

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.47  E-value=1.7e-07  Score=80.10  Aligned_cols=56  Identities=18%  Similarity=0.093  Sum_probs=47.4

Q ss_pred             hhcCCCCCCeEEEEcCCcChHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       171 ~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~-~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...++.+|||+|||+|..+..+++...+ ++|+|+|+|+.|++.+++++...+.
T Consensus        77 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~  133 (274)
T 3ajd_A           77 IVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV  133 (274)
T ss_dssp             HHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC
Confidence            3455567889999999999999999986332 5999999999999999999987664

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.47  E-value=1e-07  Score=82.85  Aligned_cols=42  Identities=26%  Similarity=0.298  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      ++.+|||||||||.++..+++.|. .+|+|||+|++||+.+.+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga-~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGA-KLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSSSCSCHHHH
T ss_pred             cccEEEecCCCccHHHHHHHhCCC-CEEEEEECCHHHHHHHHH
Confidence            567999999999999999999875 499999999999998655

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.46  E-value=2.7e-07  Score=77.87  Aligned_cols=51  Identities=10%  Similarity=0.044  Sum_probs=44.5

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||||||+|..+..+++..+ +++|+++|+|+.|++.|++++...+.
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~  129 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV  129 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3468999999999999999999843 46999999999999999999887653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.46  E-value=2.9e-07  Score=79.04  Aligned_cols=49  Identities=12%  Similarity=0.052  Sum_probs=37.8

Q ss_pred             CCCCeEEEEcCCcChHHH----HHHHhCCCCeE--EEEeCCHHHHHHHHHHhhcc
Q 026825          176 VLGGNIIDASCGSGLFSR----IFAKSGLFSLV--VALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~----~la~~g~~~~V--vGvD~S~~ml~~A~~~~~~~  224 (232)
                      .++.+|||||||+|.++.    .+...++...|  +|+|+|++|++.|++++.+.
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~  105 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT  105 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc
Confidence            356799999999997554    44444444444  99999999999999998754

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.46  E-value=3.4e-07  Score=80.06  Aligned_cols=58  Identities=19%  Similarity=0.124  Sum_probs=48.8

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +...+...++.+|||+|||+|..+..+++.. ..++|+|+|+|+.|++.+++++...+.
T Consensus       110 ~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~  168 (315)
T 1ixk_A          110 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV  168 (315)
T ss_dssp             HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC
Confidence            3445666678999999999999999999874 235999999999999999999987654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.45  E-value=6e-07  Score=72.78  Aligned_cols=48  Identities=25%  Similarity=0.385  Sum_probs=39.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      .+...+.  ++.+|||+|||+|.++..+   +. .+|+|+|+|+.|++.|++++
T Consensus        29 ~l~~~~~--~~~~vLdiG~G~G~~~~~l---~~-~~v~~vD~s~~~~~~a~~~~   76 (211)
T 2gs9_A           29 ALKGLLP--PGESLLEVGAGTGYWLRRL---PY-PQKVGVEPSEAMLAVGRRRA   76 (211)
T ss_dssp             HHHTTCC--CCSEEEEETCTTCHHHHHC---CC-SEEEEECCCHHHHHHHHHHC
T ss_pred             HHHHhcC--CCCeEEEECCCCCHhHHhC---CC-CeEEEEeCCHHHHHHHHHhC
Confidence            3444443  5889999999999999888   32 28999999999999999986

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.45  E-value=5.2e-07  Score=81.08  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..++..|. .+|+|+|+|+.|++.|++++..++.
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~-~~v~~vD~s~~~l~~a~~n~~~n~~  265 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGV  265 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            578999999999999999999854 4999999999999999999987653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.45  E-value=2.6e-07  Score=81.13  Aligned_cols=48  Identities=27%  Similarity=0.501  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||||||+|.++..+++.+. .+|+|+|+| .|++.|+++++..+.
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~-~~v~~vD~s-~~~~~a~~~~~~~~~   85 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMS-SIIEMAKELVELNGF   85 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESS-THHHHHHHHHHHTTC
T ss_pred             CCCEEEEecCccHHHHHHHHHCCC-CEEEEEChH-HHHHHHHHHHHHcCC
Confidence            478999999999999999999864 499999999 699999999886653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.44  E-value=2.7e-07  Score=75.14  Aligned_cols=52  Identities=17%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      .+.+.+. .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++.
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~~~~~~~~~~~~~~   75 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENGT--RVSGIEAFPEAAEQAKEKLD   75 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTC--EEEEEESSHHHHHHHHTTSS
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHhCC
Confidence            3445555 4688999999999999999999864  99999999999999998753

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.43  E-value=5.4e-07  Score=75.35  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=44.6

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++++|||||||+|..+..+++..+ +++|+++|+++.+++.|++++.+.+.
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~  120 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV  120 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3478999999999999999998833 46999999999999999999987654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.43  E-value=2.7e-07  Score=79.67  Aligned_cols=51  Identities=14%  Similarity=0.103  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la-~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||||||+|.++..++ ...+..+|+|+|+|+.|++.|++++...+.
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~  168 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL  168 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC
Confidence            348899999999999999985 344456999999999999999999986553

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.42  E-value=3.2e-07  Score=82.20  Aligned_cols=49  Identities=24%  Similarity=0.133  Sum_probs=44.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++.+|||+|||+|.++..++..+.  +|+|+|+|+.|++.|++++..++..
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~n~~~n~~~  257 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLNGLG  257 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999854  9999999999999999999877643

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.41  E-value=5.2e-07  Score=82.25  Aligned_cols=48  Identities=27%  Similarity=0.352  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++..++.
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ngl  337 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINNV  337 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence            478999999999999999999876  999999999999999999986553

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.41  E-value=4.9e-07  Score=78.08  Aligned_cols=56  Identities=21%  Similarity=0.158  Sum_probs=47.9

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +.+.+.  ++.+|||+|||+|.++..++..|. .+|+++|+++.+++.++++++.++..
T Consensus       119 i~~~~~--~g~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N~v~  174 (278)
T 3k6r_A          119 MAKVAK--PDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKVE  174 (278)
T ss_dssp             HHHHCC--TTCEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTCT
T ss_pred             HHHhcC--CCCEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHcCCC
Confidence            344444  489999999999999999999875 49999999999999999999977653

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.41  E-value=4.1e-07  Score=75.73  Aligned_cols=50  Identities=12%  Similarity=0.030  Sum_probs=43.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||||||+|..+..+++... +++|+++|+|+.+++.|++++...+.
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~  122 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV  122 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            468999999999999999998743 46999999999999999999876543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.41  E-value=5.7e-07  Score=83.20  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=46.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|++++...+.
T Consensus       149 ~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~-~~V~gvD~s~-~l~~A~~~~~~~gl  205 (480)
T 3b3j_A          149 AILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA-RKIYAVEAST-MAQHAEVLVKSNNL  205 (480)
T ss_dssp             HHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTC-SEEEEEECHH-HHHHHHHHHHHTTC
T ss_pred             HHHHhhhhcCCCEEEEecCcccHHHHHHHHcCC-CEEEEEEcHH-HHHHHHHHHHHcCC
Confidence            344455445678999999999999999998753 4999999999 99999999887654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.40  E-value=4.2e-07  Score=75.00  Aligned_cols=50  Identities=16%  Similarity=0.327  Sum_probs=42.3

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHh-CC-----CCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKS-GL-----FSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~-g~-----~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ..++.+|||||||+|.++..+++. +.     ..+|+|+|+++.|++.|++++...
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  137 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD  137 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhc
Confidence            345789999999999999999885 31     248999999999999999998653

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.40  E-value=4.3e-07  Score=78.62  Aligned_cols=46  Identities=22%  Similarity=0.327  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|++++..
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~   79 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYED   79 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHH
Confidence            47899999999999999998763 34999999999999999998764

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.40  E-value=1.5e-08  Score=85.32  Aligned_cols=55  Identities=13%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ...+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++.
T Consensus        18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~   72 (245)
T 1yub_A           18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLK   72 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTT
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhc
Confidence            34555666666688999999999999999999985  99999999999999988765

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.40  E-value=8.7e-08  Score=80.67  Aligned_cols=51  Identities=10%  Similarity=0.092  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||||||+|..+..+++... +++|+|+|+++.|++.|++++...+.
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~  110 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ  110 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3478999999999999999998642 56999999999999999999987664

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.38  E-value=2.1e-07  Score=79.35  Aligned_cols=49  Identities=20%  Similarity=0.237  Sum_probs=42.4

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH-------HHHHHHHHHhhcc
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE-------NMLKQCYEFVQQE  224 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~-------~ml~~A~~~~~~~  224 (232)
                      ...++.+|||+|||+|.++..+++.+.  +|+|+|+|+       .|++.|++++...
T Consensus        80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~  135 (258)
T 2r6z_A           80 NHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQ  135 (258)
T ss_dssp             TGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHH
T ss_pred             CcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhh
Confidence            333468999999999999999999876  999999999       9999998876543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.37  E-value=2e-07  Score=79.79  Aligned_cols=58  Identities=12%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...++.  ..+|||||||+|.++..++...+..+|+|+|+++.|++.+++++...+.
T Consensus       124 ~~i~~~i~~--p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~  181 (281)
T 3lcv_B          124 RELFRHLPR--PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV  181 (281)
T ss_dssp             HHHGGGSCC--CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred             HHHHhccCC--CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC
Confidence            334444533  7899999999999999998887778999999999999999999987653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.35  E-value=4.9e-07  Score=80.90  Aligned_cols=48  Identities=25%  Similarity=0.463  Sum_probs=42.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .++.+|||||||+|.++..+++. ++..+|+|+|+|+.|++.|++++..
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~  130 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEY  130 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHH
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            45789999999999999999887 3556999999999999999998754

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.35  E-value=1.1e-06  Score=77.68  Aligned_cols=59  Identities=17%  Similarity=0.013  Sum_probs=49.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.++..++.+|||||||+|.++..+++..++.+++|+|+ +.|++.|++++.+.+.
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~  238 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV  238 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC
Confidence            4455556555678999999999999999999976679999999 9999999999876543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.35  E-value=8.7e-08  Score=80.37  Aligned_cols=42  Identities=14%  Similarity=0.059  Sum_probs=37.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHh----CCCCeEEEEeCCHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCY  218 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~----g~~~~VvGvD~S~~ml~~A~  218 (232)
                      ++.+|||||||+|..+..+++.    ++.++|+|||+|+.|++.|+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~  126 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA  126 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh
Confidence            3679999999999999999987    45569999999999999887

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=98.34  E-value=1.9e-07  Score=63.43  Aligned_cols=46  Identities=20%  Similarity=0.171  Sum_probs=40.0

Q ss_pred             cccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      .+-+++|+||+|+++|....         .++.+.|+.|+..|++.+|++.++.+
T Consensus         5 ~~LLeiL~CP~ck~~L~~~~---------~~g~LvC~~c~~~YPI~dGIPvmL~~   50 (67)
T 2jny_A            5 PQLLEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLID   50 (67)
T ss_dssp             GGGTCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSS
T ss_pred             HHHHHHhCCCCCCCcCeEeC---------CCCEEEcCCCCccccCCCCEeeeChh
Confidence            45679999999999998654         35789999999999999999999965

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.34  E-value=1.4e-06  Score=77.14  Aligned_cols=58  Identities=9%  Similarity=-0.020  Sum_probs=48.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.+...++.+|||||||+|.++..+++..+..+++|+|+ +.|++.|++++...+
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~  229 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG  229 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC
Confidence            3445555555678999999999999999999976679999999 999999999987654

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=98.32  E-value=2.2e-07  Score=63.33  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=39.7

Q ss_pred             cccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      .+-+++|+||+|+++|....         ..+.+.|+.|+..|++.+|++.++.+
T Consensus         3 ~~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~   48 (68)
T 2jr6_A            3 KKFLDILVCPVTKGRLEYHQ---------DKQELWSRQAKLAYPIKDGIPYMLEN   48 (68)
T ss_dssp             CSSSCCCBCSSSCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCTT
T ss_pred             hHHhhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChh
Confidence            35679999999999998653         34789999999999999999999965

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.31  E-value=1.1e-06  Score=74.40  Aligned_cols=47  Identities=13%  Similarity=0.195  Sum_probs=41.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .++.+|||||||+|.++..+. .  ..+|+|+|+++.|++.+++++...+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~--~~~y~a~DId~~~i~~ar~~~~~~g  150 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-G--IASVWGCDIHQGLGDVITPFAREKD  150 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-T--CSEEEEEESBHHHHHHHHHHHHHTT
T ss_pred             CCCCeEEEecCCccHHHHHhc-c--CCeEEEEeCCHHHHHHHHHHHHhcC
Confidence            457899999999999999887 3  3499999999999999999987644

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.31  E-value=1.5e-06  Score=75.48  Aligned_cols=57  Identities=18%  Similarity=0.289  Sum_probs=47.1

Q ss_pred             HHHhhcCC--CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~--~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+.+.++.  .++.+|||||||+|.++..+++..+..+++|+|+| .|++.|++++.+.+
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~  212 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG  212 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC
Confidence            44444544  56789999999999999999999655699999999 99999999986543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.31  E-value=1.7e-06  Score=83.60  Aligned_cols=50  Identities=12%  Similarity=0.066  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++.+|||+|||+|.++..++..|. .+|++||+|+.|++.|++++..++..
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~  588 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLT  588 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            478999999999999999998876 47999999999999999999877643

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=98.30  E-value=2.5e-07  Score=63.44  Aligned_cols=46  Identities=26%  Similarity=0.403  Sum_probs=39.8

Q ss_pred             cccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      .+-+++|+||+|+++|....         ..+.+.|+.|+..|++.+|++.++.+
T Consensus         3 ~~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~   48 (70)
T 2js4_A            3 SRLLDILVCPVCKGRLEFQR---------AQAELVCNADRLAFPVRDGVPIMLEA   48 (70)
T ss_dssp             CCCCCCCBCTTTCCBEEEET---------TTTEEEETTTTEEEEEETTEECCCGG
T ss_pred             hHHhhheECCCCCCcCEEeC---------CCCEEEcCCCCceecCCCCeeeeChh
Confidence            35679999999999998654         35789999999999999999999966

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=98.29  E-value=2.5e-07  Score=63.22  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=39.5

Q ss_pred             cccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      .+-+++|+||+|+++|....         ..+.+.|+.|+..|++.+|++.++.+
T Consensus         3 ~~LLeiL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~   48 (69)
T 2pk7_A            3 TKLLDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLES   48 (69)
T ss_dssp             CCGGGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGG
T ss_pred             hHHHhheeCCCCCCcCeEeC---------CCCEEEcCCCCcEecCcCCeeeeChh
Confidence            35678999999999998653         25789999999999999999999965

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.29  E-value=7.5e-07  Score=76.67  Aligned_cols=64  Identities=16%  Similarity=0.170  Sum_probs=44.6

Q ss_pred             CCCCcHHHHHHHHhh-cCCCCCCeEEEEcCCcCh----HHHHHHHh-CC---CCeEEEEeCCHHHHHHHHHHh
Q 026825          158 GFPGPEKEFELMKGY-LKPVLGGNIIDASCGSGL----FSRIFAKS-GL---FSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       158 g~~~~~~~~~~l~~~-l~~~~~~~ILDiGCGtG~----~~~~la~~-g~---~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      .|+.....++.+... ++..++.+|||+|||||.    ++..+++. +.   +.+|+|+|+|+.||+.|++.+
T Consensus        85 ~FfRd~~~f~~l~~~llp~~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A           85 AFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             CTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             cccCChHHHHHHHHHccCCCCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            355544444444443 332235799999999998    56666665 31   239999999999999999875

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=98.29  E-value=2.1e-07  Score=63.42  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=39.2

Q ss_pred             ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      +-+++|+||+|+++|....         ..+.+.|+.|+..|++.+|++.++.+
T Consensus         4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~   48 (68)
T 2hf1_A            4 KFLEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLES   48 (68)
T ss_dssp             CCEEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGG
T ss_pred             HHhhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChh
Confidence            5678999999999998653         35789999999999999999999965

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.29  E-value=2.1e-06  Score=76.67  Aligned_cols=50  Identities=20%  Similarity=0.143  Sum_probs=44.6

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++.+|||+| |+|.++..++..++..+|+|+|+|+.|++.|+++++..+.
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~  220 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY  220 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3578999999 9999999999987656999999999999999999987653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.29  E-value=1e-06  Score=77.59  Aligned_cols=85  Identities=8%  Similarity=0.012  Sum_probs=59.0

Q ss_pred             hhhHHHHHHHHHHHH----hcCCCCcHHHHHHHHhhc----CCCCCCeEEEEcCCcChHHHHHHHhCCC-----CeEEEE
Q 026825          141 FMSFIYERGWRQNFV----WGGFPGPEKEFELMKGYL----KPVLGGNIIDASCGSGLFSRIFAKSGLF-----SLVVAL  207 (232)
Q Consensus       141 ~~s~~ye~~wr~~f~----~~g~~~~~~~~~~l~~~l----~~~~~~~ILDiGCGtG~~~~~la~~g~~-----~~VvGv  207 (232)
                      .+...|+...++...    .+.++.|......+...+    ...++.+|||+|||+|.++..+++....     .+++|+
T Consensus        86 ~~g~~ye~~~~~~~~~~~~~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~Gi  165 (344)
T 2f8l_A           86 EIRKGLQLALLKGMKHGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGV  165 (344)
T ss_dssp             HHHHHHHHHHHHHTSSSCCGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEE
T ss_pred             HHHHHHHHHHHHHhhcccccCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEE
Confidence            345556554443222    134778876644433332    3445789999999999999998877521     489999


Q ss_pred             eCCHHHHHHHHHHhhccC
Q 026825          208 DYSENMLKQCYEFVQQES  225 (232)
Q Consensus       208 D~S~~ml~~A~~~~~~~~  225 (232)
                      |+++.|++.|+.++...+
T Consensus       166 Di~~~~~~~a~~n~~~~g  183 (344)
T 2f8l_A          166 DVDDLLISLALVGADLQR  183 (344)
T ss_dssp             ESCHHHHHHHHHHHHHHT
T ss_pred             ECCHHHHHHHHHHHHhCC
Confidence            999999999999987544

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.28  E-value=1.1e-06  Score=79.78  Aligned_cols=45  Identities=9%  Similarity=0.104  Sum_probs=42.5

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      +.+|||+|||+|..+..+++.+.  +|+|+|+|+.|++.|++++...
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~  138 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLL  138 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHh
Confidence            78999999999999999999886  9999999999999999999865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.27  E-value=1.6e-06  Score=76.53  Aligned_cols=47  Identities=11%  Similarity=0.126  Sum_probs=42.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+|||||||+|.+++.+++.....+|+++|+|+.|++.|++++..
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~  166 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD  166 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            46899999999999999999885446999999999999999999864

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.27  E-value=2e-06  Score=74.43  Aligned_cols=60  Identities=17%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      |......+..... .++..|||++||+|..+..+++.|.  +++|+|+++.|++.|++++...
T Consensus       221 p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          221 PLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            3455566666554 4688999999999999999999998  9999999999999999998764

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.27  E-value=1.7e-06  Score=77.84  Aligned_cols=62  Identities=18%  Similarity=0.093  Sum_probs=50.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC--------------------------------------CeEEE
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SLVVA  206 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~--------------------------------------~~VvG  206 (232)
                      ....+.......++..|||++||+|.++..++..+.+                                      .+|+|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            3445555555566889999999999999999887532                                      47999


Q ss_pred             EeCCHHHHHHHHHHhhccCC
Q 026825          207 LDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       207 vD~S~~ml~~A~~~~~~~~~  226 (232)
                      +|+++.|++.|++++...+.
T Consensus       263 vDid~~ai~~Ar~Na~~~gl  282 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGV  282 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTC
T ss_pred             EECCHHHHHHHHHHHHHcCC
Confidence            99999999999999987664

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.25  E-value=2e-06  Score=75.78  Aligned_cols=57  Identities=12%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+.+.++..++.+|||||||+|.++..+++.++..+++++|+ +.|++.|++++...+
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~  230 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG  230 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC
Confidence            344555555678999999999999999999987679999999 999999999987654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.24  E-value=2.4e-06  Score=74.23  Aligned_cols=46  Identities=13%  Similarity=0.147  Sum_probs=41.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ++.+|||||||+|.++..+++.....+|+++|+|+.|++.|++++.
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~  140 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFP  140 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhH
Confidence            4789999999999999999987544599999999999999999884

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.24  E-value=3e-06  Score=77.40  Aligned_cols=87  Identities=17%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             chhhHHHHHHHHHHHHh-----cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-------------CC
Q 026825          140 PFMSFIYERGWRQNFVW-----GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-------------LF  201 (232)
Q Consensus       140 ~~~s~~ye~~wr~~f~~-----~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-------------~~  201 (232)
                      ..+...|+....+....     +.|+.|......+.+.+.+.++.+|||.|||+|.++..+++..             ..
T Consensus       129 d~~G~~yE~ll~~~~~~~~~~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~  208 (445)
T 2okc_A          129 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  208 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccccCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcC
Confidence            45567777655543211     2378898888888888887778899999999999999888651             12


Q ss_pred             CeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          202 SLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       202 ~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+++|+|+++.|++.|+.++...+.
T Consensus       209 ~~i~G~Ei~~~~~~lA~~nl~l~g~  233 (445)
T 2okc_A          209 KALHGVDNTPLVVTLASMNLYLHGI  233 (445)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            3799999999999999999876553

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.24  E-value=4.3e-06  Score=74.30  Aligned_cols=58  Identities=9%  Similarity=-0.019  Sum_probs=49.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+.+.++..+..+|||||||+|.++..+++..++.+++++|+ +.|++.|++++...+
T Consensus       192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~  249 (369)
T 3gwz_A          192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG  249 (369)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC
Confidence            3444555555678999999999999999999977779999999 999999999987654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.21  E-value=2.9e-06  Score=76.54  Aligned_cols=64  Identities=13%  Similarity=0.001  Sum_probs=51.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC--------------------------------------CeEE
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SLVV  205 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~--------------------------------------~~Vv  205 (232)
                      .....+.......++..|||.+||+|.++..++..+.+                                      .+|+
T Consensus       188 ~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  267 (393)
T 3k0b_A          188 TMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII  267 (393)
T ss_dssp             HHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence            33445555555556789999999999999998877542                                      3699


Q ss_pred             EEeCCHHHHHHHHHHhhccCCC
Q 026825          206 ALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       206 GvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      |+|+|+.|++.|++++...+..
T Consensus       268 GvDid~~al~~Ar~Na~~~gl~  289 (393)
T 3k0b_A          268 GGDIDARLIEIAKQNAVEAGLG  289 (393)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCT
T ss_pred             EEECCHHHHHHHHHHHHHcCCC
Confidence            9999999999999999877653

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.21  E-value=1.5e-06  Score=80.09  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=48.9

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +...+...++.+|||+|||+|..+..+++... .++|+|+|+|+.|++.+++++...+.
T Consensus        93 ~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~  151 (464)
T 3m6w_A           93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA  151 (464)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC
T ss_pred             HHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            33455666789999999999999999998743 35999999999999999999987764

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.21  E-value=2.6e-06  Score=74.22  Aligned_cols=47  Identities=17%  Similarity=0.190  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+|||||||+|.+++.+++.....+|+++|+++.|++.|++++..
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~  141 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG  141 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence            46899999999999999999886556999999999999999999864

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.21  E-value=2.5e-06  Score=75.69  Aligned_cols=48  Identities=13%  Similarity=0.063  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+|||||||+|.++..+++..+..+++++|+ +.|++.|++++.+.+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~  226 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS  226 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC
Confidence            468999999999999999999877779999999 999999999987654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.21  E-value=2.3e-06  Score=75.34  Aligned_cols=47  Identities=19%  Similarity=0.280  Sum_probs=41.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||+|||+|.++.. ++.+  .+|+|+|+|+.|++.|++++..++.
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~--~~V~~vD~s~~ai~~a~~n~~~n~l  241 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNA--KKIYAIDINPHAIELLKKNIKLNKL  241 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTS--SEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEccCccCHHHHh-ccCC--CEEEEEECCHHHHHHHHHHHHHcCC
Confidence            478999999999999999 7743  4999999999999999999987764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.20  E-value=3.1e-06  Score=72.80  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=42.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ++.+|||||||+|.+++.+++.....+|+++|+++.|++.|++++..
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~  124 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  124 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence            46899999999999999999885556999999999999999999865

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.19  E-value=1.6e-06  Score=76.03  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=42.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+|||||||+|.++..+++.....+|+++|+|+.|++.|++++..
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~  162 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  162 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            46899999999999999999874445999999999999999999875

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.19  E-value=1.8e-06  Score=78.43  Aligned_cols=60  Identities=22%  Similarity=0.261  Sum_probs=50.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...+...++.+|||+|||+|..+..+++.+.+++|+|+|+|+.+++.+++++...+.
T Consensus       236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~  295 (429)
T 1sqg_A          236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM  295 (429)
T ss_dssp             HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC
Confidence            334445666678999999999999999999987657999999999999999999987653

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.18  E-value=1.9e-06  Score=73.99  Aligned_cols=44  Identities=11%  Similarity=0.164  Sum_probs=40.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      .+.+|||||||+|.++..+++. ...+|+++|+++.|++.|++++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~  118 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI  118 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH
Confidence            4689999999999999999988 4469999999999999999998

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.17  E-value=3.9e-06  Score=73.35  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=47.9

Q ss_pred             hhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          171 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       171 ~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...++.+|||+|||+|..+..++.. +..++|+|+|+++.+++.++++++..+.
T Consensus        96 ~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~  152 (309)
T 2b9e_A           96 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV  152 (309)
T ss_dssp             HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            3455667899999999999999999986 3346999999999999999999987764

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.17  E-value=8.6e-07  Score=79.58  Aligned_cols=61  Identities=20%  Similarity=0.385  Sum_probs=50.0

Q ss_pred             cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHH
Q 026825          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQC  217 (232)
Q Consensus       157 ~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A  217 (232)
                      +.++.|....+.+.+.+...++.+|||+|||+|.++..++++. ...+++|+|+++.|++.|
T Consensus        19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a   80 (421)
T 2ih2_A           19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP   80 (421)
T ss_dssp             --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred             ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC
Confidence            4578888888888888875557799999999999999999862 335999999999998776

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.17  E-value=2.1e-06  Score=74.93  Aligned_cols=47  Identities=13%  Similarity=0.128  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+|||||||+|.++..+++.....+|+++|+++.|++.|++++..
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~  123 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE  123 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHh
Confidence            46899999999999999999884445999999999999999999864

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.17  E-value=3.6e-06  Score=77.04  Aligned_cols=59  Identities=19%  Similarity=0.209  Sum_probs=49.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~-~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+...+...++.+|||+|||+|..+..++....+ ++|+|+|+|+.+++.+++++...+.
T Consensus       250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~  309 (450)
T 2yxl_A          250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI  309 (450)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC
Confidence            3344566667889999999999999999997433 5999999999999999999987654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.16  E-value=2e-06  Score=74.56  Aligned_cols=47  Identities=11%  Similarity=0.109  Sum_probs=41.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+|||||||+|.++..+++.....+|+++|+|+.|++.|++++..
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~  136 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQ  136 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHh
Confidence            36899999999999999999884445999999999999999999853

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.16  E-value=4.5e-06  Score=75.12  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=49.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCC--------------------------------------CeEEEE
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SLVVAL  207 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~--------------------------------------~~VvGv  207 (232)
                      ...+.......++..+||.+||+|.++..++..+.+                                      .+|+|+
T Consensus       183 Aaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv  262 (384)
T 3ldg_A          183 AAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF  262 (384)
T ss_dssp             HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred             HHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE
Confidence            344455555556789999999999999998876542                                      369999


Q ss_pred             eCCHHHHHHHHHHhhccCCC
Q 026825          208 DYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       208 D~S~~ml~~A~~~~~~~~~~  227 (232)
                      |+++.|++.|++++...+..
T Consensus       263 Did~~al~~Ar~Na~~~gl~  282 (384)
T 3ldg_A          263 DFDGRMVEIARKNAREVGLE  282 (384)
T ss_dssp             ESCHHHHHHHHHHHHHTTCT
T ss_pred             ECCHHHHHHHHHHHHHcCCC
Confidence            99999999999999887653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.15  E-value=2.3e-06  Score=73.34  Aligned_cols=47  Identities=13%  Similarity=0.152  Sum_probs=41.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+|||||||+|.+++.+++.....+|++||+++.|++.|++++..
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~  121 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPS  121 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHh
Confidence            47899999999999999999873335999999999999999999854

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.15  E-value=3.6e-06  Score=77.82  Aligned_cols=56  Identities=11%  Similarity=0.040  Sum_probs=47.5

Q ss_pred             hhcCCC--CCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          171 GYLKPV--LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       171 ~~l~~~--~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+...  ++.+|||+|||+|..+..+++.. ..+.|+|+|+|+.|++.+++++...+.
T Consensus       109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~  167 (479)
T 2frx_A          109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI  167 (479)
T ss_dssp             HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred             HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            345554  78999999999999999999873 235999999999999999999987664

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.15  E-value=3.4e-06  Score=73.57  Aligned_cols=49  Identities=14%  Similarity=0.069  Sum_probs=43.8

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+..+|||||||+|.++..+++..+..+++++|+ +.|++.|++++.+.+
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~  216 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG  216 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC
Confidence            3468999999999999999999877779999999 999999999987654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.14  E-value=3.7e-06  Score=72.46  Aligned_cols=48  Identities=17%  Similarity=0.072  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCc--C-hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGS--G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGt--G-~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ....|||||||+  + .....+.+..++.+|+|||.|+.||+.|++++...
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~  128 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST  128 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC
Confidence            347899999997  3 44444444455679999999999999999998764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.14  E-value=3.5e-06  Score=73.97  Aligned_cols=57  Identities=11%  Similarity=0.036  Sum_probs=47.2

Q ss_pred             HHHhhcCCCC-CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~-~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+.+.++..+ +.+|||||||+|.++..+++..+..+++++|+ +.|++.|++++.+.+
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~  226 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD  226 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC
Confidence            3444444444 78999999999999999999977779999999 889999999987654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.14  E-value=2.5e-06  Score=74.76  Aligned_cols=47  Identities=15%  Similarity=0.119  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+|||||||+|.+++.+++.....+|+++|+++.|++.|++++..
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~  154 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG  154 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            46899999999999999999885456999999999999999999865

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.12  E-value=3.3e-06  Score=77.65  Aligned_cols=59  Identities=15%  Similarity=0.022  Sum_probs=49.3

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +...+...++.+|||+|||+|..+..++.. +..++|+|+|+|+.+++.+++++...+..
T Consensus        97 ~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~  156 (456)
T 3m4x_A           97 VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS  156 (456)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            334556667899999999999999999887 33359999999999999999999887654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.09  E-value=4.2e-06  Score=73.50  Aligned_cols=46  Identities=15%  Similarity=0.133  Sum_probs=41.1

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+|||||||+|.+++.+++..+..+|++||+++.|++.|++++..
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~  135 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI  135 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc
Confidence            3499999999999999999965555999999999999999999864

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=98.09  E-value=1.5e-06  Score=56.93  Aligned_cols=44  Identities=25%  Similarity=0.432  Sum_probs=38.3

Q ss_pred             cccCCcccCCCCCCCcccccCCCccccccCCCceECC--CCCcccccCCCccccccc
Q 026825           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~--~C~~~y~~~~g~~d~~~~  120 (232)
                      .+-+++|+||+|+++|...+           +.+.|.  .|+..|++.+|++.++.+
T Consensus         5 ~~lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~   50 (56)
T 2kpi_A            5 AGLLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVD   50 (56)
T ss_dssp             CSCTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTT
T ss_pred             HHHHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHH
Confidence            45679999999999988653           689999  999999999999999854

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.08  E-value=4e-06  Score=64.90  Aligned_cols=41  Identities=20%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHH
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQ  216 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~  216 (232)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+|+ |++.
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~   61 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI   61 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc
Confidence            345789999999999999999998 5556999999999 7643

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.08  E-value=4.1e-06  Score=67.22  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCC--CCeEEEEeCCH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSE  211 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~--~~~VvGvD~S~  211 (232)
                      .++.+|||+|||+|.++..+++...  ..+|+|+|+|+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            3478999999999999999998854  45999999998

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.05  E-value=4.5e-06  Score=72.71  Aligned_cols=56  Identities=18%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ..+.+.++..+ .+|||||||+|.++..+++..+..+++|+|+ +.|++.|++++.+.
T Consensus       158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~  213 (334)
T 2ip2_A          158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL  213 (334)
T ss_dssp             HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH
T ss_pred             HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc
Confidence            44445555444 8999999999999999999976669999999 99999999987643

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.05  E-value=4.7e-06  Score=67.51  Aligned_cols=35  Identities=14%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSEN  212 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~  212 (232)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+++.
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~~~--~V~gvD~~~~   58 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSLAR--KIISIDLQEM   58 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTTCS--EEEEEESSCC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHcCC--cEEEEecccc
Confidence            4588999999999999999999854  9999999974

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.02  E-value=8.4e-06  Score=65.01  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh-CCC--------CeEEEEeCCHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS-GLF--------SLVVALDYSEN  212 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~-g~~--------~~VvGvD~S~~  212 (232)
                      .++.+|||+|||+|.++..+++. +..        .+|+|+|+|+.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            35789999999999999999998 421        59999999984

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.02  E-value=7e-06  Score=70.03  Aligned_cols=52  Identities=15%  Similarity=0.096  Sum_probs=42.0

Q ss_pred             HHhhcCCCCC--CeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          169 MKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       169 l~~~l~~~~~--~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +.+.+...++  .+|||++||+|..+..++.+|.  +|+|+|+++.+...+++.++
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~  131 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLA  131 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHH
Confidence            4444544445  8999999999999999999987  89999999998777766654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.01  E-value=5.8e-06  Score=67.60  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=33.6

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +.+|||||||+|.++..++..      +|+|+|+.|++.|+++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~   84 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR   84 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc
Confidence            789999999999999887653      9999999999999986

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.99  E-value=1.1e-05  Score=72.48  Aligned_cols=48  Identities=21%  Similarity=0.065  Sum_probs=43.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ++.+|||+|||+|.++..++......+|+++|+++.+++.++++++.+
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n   94 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN   94 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            478999999999999999999843358999999999999999999876

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=97.98  E-value=3e-06  Score=61.52  Aligned_cols=55  Identities=11%  Similarity=0.088  Sum_probs=42.7

Q ss_pred             cccCCcccCCCCCCCcccccCC------------------CccccccCCCceECCCCCcccccCCCccccccc
Q 026825           66 STSKNVLACPICYKPLTWIGDS------------------SLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        66 ~~~~~~l~CPiC~~~l~~~~~~------------------~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      .+-+++|+||+|.++|......                  ....+.+..+.|.|+.|+..|++.+|++.++.+
T Consensus         3 ~~LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~   75 (97)
T 2k5r_A            3 RKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPE   75 (97)
T ss_dssp             TTTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGG
T ss_pred             hHHhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChH
Confidence            3568999999999998765320                  122344456789999999999999999999965

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.93  E-value=5.9e-06  Score=70.47  Aligned_cols=45  Identities=9%  Similarity=-0.019  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+|||||||+|.+++.+.+. . .+|+++|+++.|++.|++++..
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~  116 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPH  116 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTT
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHh
Confidence            4689999999999999999888 4 6999999999999999988753

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.89  E-value=4.4e-05  Score=64.70  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      |....+.+.+... .++..|||..||+|..+..+.+.|.  +++|+|+++.+++.|++++...+
T Consensus       198 p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          198 PRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcc
Confidence            4555556665544 4688999999999999999999998  99999999999999999998754

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.88  E-value=2.5e-05  Score=73.18  Aligned_cols=86  Identities=14%  Similarity=0.067  Sum_probs=57.2

Q ss_pred             hhhHHHHHHHHHHH-----HhcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC---------------
Q 026825          141 FMSFIYERGWRQNF-----VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL---------------  200 (232)
Q Consensus       141 ~~s~~ye~~wr~~f-----~~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~---------------  200 (232)
                      .+...|+....+..     ..+.||.|......+.+.+.+.++.+|||.+||+|.++..+.+...               
T Consensus       128 ~lG~~YE~ll~~~a~~~~~~~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~  207 (541)
T 2ar0_A          128 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD  207 (541)
T ss_dssp             ----------------------CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHh
Confidence            44555554443321     1244889988888888888777788999999999999988776510               


Q ss_pred             ---CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          201 ---FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       201 ---~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                         ...++|+|+++.|++.|+.++...+.
T Consensus       208 ~~~~~~i~GiEid~~~~~lA~~nl~l~gi  236 (541)
T 2ar0_A          208 FQIHRAFIGLELVPGTRRLALMNCLLHDI  236 (541)
T ss_dssp             HHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             hhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence               13799999999999999999876553

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.88  E-value=1.9e-05  Score=71.22  Aligned_cols=50  Identities=16%  Similarity=0.040  Sum_probs=43.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~-~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||++||+|.++..++....+ .+|+++|+++.+++.++++++.++.
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl  102 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI  102 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            4789999999999999999986321 4899999999999999999998764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.86  E-value=3.3e-05  Score=72.41  Aligned_cols=87  Identities=16%  Similarity=0.056  Sum_probs=68.1

Q ss_pred             chhhHHHHHHHHHHHH-----hcCCCCcHHHHHHHHhhcC----CCCCCeEEEEcCCcChHHHHHHHhC---CCCeEEEE
Q 026825          140 PFMSFIYERGWRQNFV-----WGGFPGPEKEFELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVAL  207 (232)
Q Consensus       140 ~~~s~~ye~~wr~~f~-----~~g~~~~~~~~~~l~~~l~----~~~~~~ILDiGCGtG~~~~~la~~g---~~~~VvGv  207 (232)
                      ..+...|+...++...     .+-||.|......+.+.+.    +.++.+|||.+||+|.++..+.+.-   ....++|+
T Consensus       175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~  254 (542)
T 3lkd_A          175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ  254 (542)
T ss_dssp             THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence            5677888877665432     2348999988888888776    4467899999999999998888772   23589999


Q ss_pred             eCCHHHHHHHHHHhhccCC
Q 026825          208 DYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       208 D~S~~ml~~A~~~~~~~~~  226 (232)
                      |+++.+++.|+.++...+.
T Consensus       255 Eid~~~~~lA~~Nl~l~gi  273 (542)
T 3lkd_A          255 ELNTSTYNLARMNMILHGV  273 (542)
T ss_dssp             ESCHHHHHHHHHHHHHTTC
T ss_pred             ECcHHHHHHHHHHHHHcCC
Confidence            9999999999998765554

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.86  E-value=6.3e-06  Score=70.87  Aligned_cols=38  Identities=24%  Similarity=0.310  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC  217 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A  217 (232)
                      .++.+|||+|||+|.++..+++. .  +|+|||+|+ |+..+
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~-~--~V~gVD~s~-m~~~a  118 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ-P--NVREVKAYT-LGTSG  118 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS-T--TEEEEEEEC-CCCTT
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc-C--CEEEEECch-hhhhh
Confidence            45789999999999999999998 3  899999999 75443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.83  E-value=7.6e-06  Score=69.92  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ  216 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~  216 (232)
                      .++.+|||||||+|.++..+++. .  +|+|||+++ |+..
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~-~--~V~gvD~s~-m~~~  109 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR-P--HVMDVRAYT-LGVG  109 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS-T--TEEEEEEEC-CCCS
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc-C--cEEEEECch-hhhh
Confidence            45789999999999999999988 3  899999999 6433

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.82  E-value=6e-05  Score=70.67  Aligned_cols=87  Identities=20%  Similarity=0.122  Sum_probs=66.2

Q ss_pred             CchhhHHHHHHHHHHHHh-----cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-------------
Q 026825          139 MPFMSFIYERGWRQNFVW-----GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------  200 (232)
Q Consensus       139 ~~~~s~~ye~~wr~~f~~-----~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-------------  200 (232)
                      ...+...|+...++....     +.|+.|......+.+.+.+.+ ++|||.+||+|.++..+.+.-.             
T Consensus       202 ~D~lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~  280 (544)
T 3khk_A          202 KDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQ  280 (544)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHH
Confidence            356777888766554322     348999999999998887754 4999999999999887754310             


Q ss_pred             --CCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          201 --FSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       201 --~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                        ...++|+|+++.+++.|+.++...+.
T Consensus       281 ~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  308 (544)
T 3khk_A          281 KKQISVYGQESNPTTWKLAAMNMVIRGI  308 (544)
T ss_dssp             GGGEEEEECCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhceEEEEeCCHHHHHHHHHHHHHhCC
Confidence              23899999999999999999865543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.82  E-value=3.7e-05  Score=66.27  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=46.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+.+.|...+++.+||.+||.|..+..+.+++  ++|+|+|.++.+++.|++ +..
T Consensus        12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~--g~VigiD~Dp~Ai~~A~~-L~~   65 (285)
T 1wg8_A           12 QEALDLLAVRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKG-LHL   65 (285)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHH-TCC
T ss_pred             HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-hcc
Confidence            344556666678999999999999999999984  499999999999999999 754

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.80  E-value=2.1e-05  Score=69.76  Aligned_cols=51  Identities=12%  Similarity=0.048  Sum_probs=41.8

Q ss_pred             HHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       168 ~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .+.+.++ ..+..+|||||||+|.++..+++.++..+++++|+ +.|++.|++
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~  250 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP  250 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh
Confidence            3444443 34578999999999999999999987779999999 999988765

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.77  E-value=2.8e-05  Score=69.04  Aligned_cols=51  Identities=10%  Similarity=0.079  Sum_probs=41.8

Q ss_pred             HHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       168 ~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .+...++ ..+..+|||||||+|.++..+++..+..+++++|+ +.|++.|++
T Consensus       193 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  244 (368)
T 3reo_A          193 KILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA  244 (368)
T ss_dssp             HHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             HHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh
Confidence            3444444 34568999999999999999999987779999999 999988764

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.77  E-value=1.3e-05  Score=70.52  Aligned_cols=42  Identities=14%  Similarity=0.154  Sum_probs=37.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      +..+|||||||+|.++..+++..++.+++|+|+ +.|++.|++
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  229 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG  229 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc
Confidence            468999999999999999999876669999999 999998875

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.75  E-value=2e-05  Score=61.63  Aligned_cols=45  Identities=16%  Similarity=0.095  Sum_probs=36.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcC-hHHHHHHH-hCCCCeEEEEeCCHHHHH
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSG-LFSRIFAK-SGLFSLVVALDYSENMLK  215 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG-~~~~~la~-~g~~~~VvGvD~S~~ml~  215 (232)
                      +.+.+...  ++++|||||||.| ..+..|++ .|.  .|+++|+++.++.
T Consensus        27 eYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av~   73 (153)
T 2k4m_A           27 VYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHGG   73 (153)
T ss_dssp             HHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSSTT
T ss_pred             HHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCccccc
Confidence            33444443  3689999999999 69999997 787  9999999987766

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.71  E-value=6.5e-05  Score=72.51  Aligned_cols=62  Identities=15%  Similarity=0.023  Sum_probs=48.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC------------------------------------------CCe
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL------------------------------------------FSL  203 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~------------------------------------------~~~  203 (232)
                      ...+.......++..|||.+||+|.++..++..+.                                          ..+
T Consensus       179 Aa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~  258 (703)
T 3v97_A          179 AAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH  258 (703)
T ss_dssp             HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence            44455555555678999999999999998876531                                          147


Q ss_pred             EEEEeCCHHHHHHHHHHhhccCCC
Q 026825          204 VVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       204 VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      |+|+|+++.|++.|++++...|..
T Consensus       259 i~G~Did~~av~~A~~N~~~agv~  282 (703)
T 3v97_A          259 FYGSDSDARVIQRARTNARLAGIG  282 (703)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCG
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCC
Confidence            999999999999999999887653

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.69  E-value=4.8e-05  Score=67.53  Aligned_cols=51  Identities=14%  Similarity=0.064  Sum_probs=42.0

Q ss_pred             HHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       168 ~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .+...++ ..+..+|||||||+|.++..+++..+..+++++|+ +.|++.|++
T Consensus       191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  242 (364)
T 3p9c_A          191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ  242 (364)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh
Confidence            3444444 44578999999999999999999987779999999 889887764

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.67  E-value=9.6e-05  Score=65.26  Aligned_cols=57  Identities=7%  Similarity=-0.016  Sum_probs=45.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+...+......+|||||||+|.++..++++.+..+++..|+ +.+++.|++++...+
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~  226 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE  226 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc
Confidence            334444444568999999999999999999988889999998 889999999876543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.53  E-value=0.00015  Score=58.54  Aligned_cols=32  Identities=16%  Similarity=0.142  Sum_probs=27.6

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSEN  212 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~  212 (232)
                      .++.+|||||||+|.++..++   .  +|+|+|+|+.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~---~--~v~~~D~s~~   97 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR---N--PVHCFDLASL   97 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC---S--CEEEEESSCS
T ss_pred             CCCCeEEEECCcCCHHHHHhh---c--cEEEEeCCCC
Confidence            357899999999999988772   3  8999999986

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.51  E-value=0.00011  Score=64.53  Aligned_cols=47  Identities=17%  Similarity=0.098  Sum_probs=37.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHH
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK  215 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~  215 (232)
                      .+.+.++..++.+|||||||+|.++..+++..+..+++++|++ .++.
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~  221 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA  221 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh
Confidence            4445555556789999999999999999998877799999995 4444

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.49  E-value=4.8e-05  Score=67.01  Aligned_cols=42  Identities=10%  Similarity=0.079  Sum_probs=37.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      +..+|||||||+|.++..+++..+..+++++|+ +.|++.|++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  234 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG  234 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc
Confidence            468999999999999999999977679999999 789987764

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.40  E-value=6.3e-05  Score=65.44  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeC----CHHHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY----SENML  214 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~----S~~ml  214 (232)
                      .++.+|||||||+|.++..++++ .  +|+|||+    ++.++
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~-~--~V~gvD~~~~~~~~~~  120 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL-K--NVREVKGLTKGGPGHE  120 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS-T--TEEEEEEECCCSTTSC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc-C--CEEEEeccccCchhHH
Confidence            45789999999999999999998 3  7999999    66554

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.27  E-value=0.00034  Score=63.28  Aligned_cols=48  Identities=15%  Similarity=0.005  Sum_probs=34.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCC------cChHHHHHHHh-CCCCeEEEEeCCHHHH
Q 026825          166 FELMKGYLKPVLGGNIIDASCG------SGLFSRIFAKS-GLFSLVVALDYSENML  214 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCG------tG~~~~~la~~-g~~~~VvGvD~S~~ml  214 (232)
                      ++.++..+.. ++.+|||||||      +|..+..+.+. .++++|+|+|+|+.|.
T Consensus       206 Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~  260 (419)
T 3sso_A          206 YDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH  260 (419)
T ss_dssp             HHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG
T ss_pred             HHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh
Confidence            4444444433 47899999999      66666666554 4566999999999983

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.21  E-value=0.0013  Score=61.46  Aligned_cols=86  Identities=20%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             chhhHHHHHHHHHHHHh----cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh----CC---------CC
Q 026825          140 PFMSFIYERGWRQNFVW----GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----GL---------FS  202 (232)
Q Consensus       140 ~~~s~~ye~~wr~~f~~----~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~----g~---------~~  202 (232)
                      ..+...||...++....    +.||.|......+.+.+.+.++.+|+|-+||+|.|+..+.+.    ..         ..
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~  255 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES  255 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence            35667787776553211    349999999999999998888889999999999998876553    10         13


Q ss_pred             eEEEEeCCHHHHHHHHHHhhccC
Q 026825          203 LVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       203 ~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .++|+|+++.+...|+-++--.+
T Consensus       256 ~i~G~E~~~~~~~la~mNl~lhg  278 (530)
T 3ufb_A          256 SIFGGEAKSLPYLLVQMNLLLHG  278 (530)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHT
T ss_pred             hhhhhhccHHHHHHHHHHHHhcC
Confidence            69999999999999998765444

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.20  E-value=0.00049  Score=67.12  Aligned_cols=63  Identities=17%  Similarity=0.024  Sum_probs=48.9

Q ss_pred             cCCCCcHHHHHHHHhh----cCC--CCCCeEEEEcCCcChHHHHHHHhCC---CCeEEEEeCCHHHHHHHHH
Q 026825          157 GGFPGPEKEFELMKGY----LKP--VLGGNIIDASCGSGLFSRIFAKSGL---FSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       157 ~g~~~~~~~~~~l~~~----l~~--~~~~~ILDiGCGtG~~~~~la~~g~---~~~VvGvD~S~~ml~~A~~  219 (232)
                      +.|+.|......+...    ++.  .++.+|||.|||+|.++..+++...   ..+++|+|+++.+++.|+.
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~  366 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSI  366 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHH
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHH
Confidence            4478887776666655    332  3478999999999999999988742   2479999999999999943

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.96  E-value=0.0014  Score=57.76  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=46.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHh
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ..+.+.|...+++.+||..||.|..+..+.+. ++.++|+|+|.++.+++.|+ ++
T Consensus        47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL  101 (347)
T 3tka_A           47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI  101 (347)
T ss_dssp             HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC
T ss_pred             HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh
Confidence            44555677778999999999999999999987 66789999999999999994 54

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.85  E-value=0.0024  Score=60.86  Aligned_cols=48  Identities=13%  Similarity=-0.029  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~----~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ....|||||||+|.++....+.+.    ..+|++||-|+ |...|++..++++
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~  408 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE  408 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc
Confidence            346899999999988444444432    12689999997 6778888877655

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.76  E-value=0.0033  Score=54.82  Aligned_cols=61  Identities=11%  Similarity=0.078  Sum_probs=50.9

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      |....+.+.+... .++..|||.-||+|..+....+.|.  +.+|+|+++.+.+.|++++...+
T Consensus       238 p~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          238 PAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             CTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhcc
Confidence            3455555555443 3689999999999999999999998  99999999999999999998755

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.68  E-value=0.0054  Score=54.39  Aligned_cols=44  Identities=18%  Similarity=0.094  Sum_probs=38.8

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +..|||||.|.|.++..|.+.+...+|++||+++.++...++.+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            58999999999999999998732238999999999999999877

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.67  E-value=0.0043  Score=54.15  Aligned_cols=63  Identities=21%  Similarity=0.329  Sum_probs=48.7

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH---HHHHHHHHHhhccCCC
Q 026825          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE---NMLKQCYEFVQQESNF  227 (232)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~---~ml~~A~~~~~~~~~~  227 (232)
                      |....+.+..... .++..|||.-||+|..+......|.  +.+|+|+++   ..++.|++|+.+.+.+
T Consensus       228 p~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~~~~~  293 (319)
T 1eg2_A          228 PAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQDDGLI  293 (319)
T ss_dssp             CHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHHccCC
Confidence            4555566665544 3689999999999999999999998  999999999   9999999999887644

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.64  E-value=0.0044  Score=50.72  Aligned_cols=46  Identities=9%  Similarity=0.057  Sum_probs=38.6

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++|||+||  |.-+..+++.. +++|+.+|.++++.+.|++++++.+.
T Consensus        31 a~~VLEiGt--GySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g~   76 (202)
T 3cvo_A           31 AEVILEYGS--GGSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANPP   76 (202)
T ss_dssp             CSEEEEESC--SHHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECc--hHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            689999998  56777777752 45999999999999999999998763

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.44  E-value=0.0033  Score=54.29  Aligned_cols=37  Identities=19%  Similarity=0.190  Sum_probs=26.8

Q ss_pred             CCCCCCeEEEEcCCc------ChHHHHHHHh-CCCCeEEEEeCCHH
Q 026825          174 KPVLGGNIIDASCGS------GLFSRIFAKS-GLFSLVVALDYSEN  212 (232)
Q Consensus       174 ~~~~~~~ILDiGCGt------G~~~~~la~~-g~~~~VvGvD~S~~  212 (232)
                      ...++.+|||+|||+      |.  ..+++. +..++|+|+|+|+.
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC
Confidence            345688999999954      65  334444 43469999999987

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=96.33  E-value=0.0026  Score=40.13  Aligned_cols=33  Identities=18%  Similarity=0.436  Sum_probs=25.4

Q ss_pred             CcccCCCCCC-CcccccCCCccccccCCCceECCCCCcccccC
Q 026825           70 NVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (232)
Q Consensus        70 ~~l~CPiC~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~  111 (232)
                      ..+.||.|++ +|....         ..+.+.|..||..|...
T Consensus         4 ~~~~CP~C~~~~l~~d~---------~~gelvC~~CG~v~~e~   37 (50)
T 1pft_A            4 KQKVCPACESAELIYDP---------ERGEIVCAKCGYVIEEN   37 (50)
T ss_dssp             SCCSCTTTSCCCEEEET---------TTTEEEESSSCCBCCCC
T ss_pred             ccEeCcCCCCcceEEcC---------CCCeEECcccCCccccc
Confidence            4689999999 666542         34679999999998653

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=96.29  E-value=0.0041  Score=53.39  Aligned_cols=40  Identities=23%  Similarity=0.214  Sum_probs=32.1

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHH
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENM  213 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~m  213 (232)
                      ...++.+|||+|||.|.++..++.......|+|+|++..+
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~  126 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG  126 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc
Confidence            3456789999999999999998865433579999998764

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.22  E-value=0.0038  Score=55.75  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~  211 (232)
                      .++.++||+||++|.++..+.++|.  .|+|||+.+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~  243 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP  243 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh
Confidence            3589999999999999999999987  999999874

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.19  E-value=0.012  Score=53.05  Aligned_cols=48  Identities=10%  Similarity=0.048  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcCCcChHHHHHH-HhCC-CCeEEEEeCCHHHHHHHHHHhhc
Q 026825          176 VLGGNIIDASCGSGLFSRIFA-KSGL-FSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la-~~g~-~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .++..++|||++.|.++..++ +.+. .++|+++|+++...+..+++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            568899999999999999888 4543 26999999999999999999987

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.08  E-value=0.014  Score=56.18  Aligned_cols=45  Identities=13%  Similarity=-0.017  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCcChHHHHHHH----hC---------CCCeEEEEeCCHHHHHHHHHHhh
Q 026825          178 GGNIIDASCGSGLFSRIFAK----SG---------LFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~----~g---------~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +..|||||||+|.++....+    .+         ...+|+|||.|+.+...++++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~  467 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV  467 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh
Confidence            56899999999988643222    22         22499999999987766666554

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.08  E-value=0.0059  Score=52.27  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHH
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSEN  212 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~  212 (232)
                      ..++.+|||+|||+|.++..++.......|.|+|++..
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvD  109 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD  109 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEecc
Confidence            34678999999999999998887633247888888854

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.04  E-value=0.0088  Score=53.12  Aligned_cols=54  Identities=15%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .|...++.+|||+.+|.|.=+..++..+..+.|+++|+|+.-++..++++...+
T Consensus       143 ~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~  196 (359)
T 4fzv_A          143 ALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYV  196 (359)
T ss_dssp             HHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHS
T ss_pred             HhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhh
Confidence            566778999999999999999999988776789999999999999999987654

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=95.74  E-value=0.01  Score=49.91  Aligned_cols=38  Identities=24%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~  211 (232)
                      ...+++.|||+||++|.++.+++......+|+|+|+-.
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~  112 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGG  112 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCS
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCC
Confidence            34568899999999999999877773335899999865

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.69  E-value=0.0085  Score=51.85  Aligned_cols=40  Identities=20%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHH
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSEN  212 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~  212 (232)
                      ....+++.|||+||++|.++.+++.......|+|+|+-..
T Consensus        90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            3345678999999999999997777733348999999764

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=95.17  E-value=0.04  Score=47.55  Aligned_cols=47  Identities=9%  Similarity=0.261  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+++||-||-|.|..++.+.+.....+|+.|||++.+++.|++.+..
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~  129 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPN  129 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcc
Confidence            47899999999999999999885556999999999999999999854

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=94.78  E-value=0.035  Score=47.96  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSEN  212 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~  212 (232)
                      .++.+|||+||++|.++..+.+......|+|+|+...
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            3588999999999999999998633247999999864

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=94.22  E-value=0.056  Score=45.58  Aligned_cols=40  Identities=10%  Similarity=-0.042  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHh-------CCC-----CeEEEEeCCH---HHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKS-------GLF-----SLVVALDYSE---NMLKQ  216 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~-------g~~-----~~VvGvD~S~---~ml~~  216 (232)
                      +..+|||+|+|+|..+..+.+.       +++     .+++++|..+   +++..
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~  114 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLAL  114 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHH
Confidence            4679999999999887776543       332     4899999766   66653

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=93.87  E-value=0.11  Score=45.35  Aligned_cols=45  Identities=18%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      +.++||+.||.|.++..+...|. ..|+++|+++.+++..+.+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~   55 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGE   55 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCC
Confidence            57899999999999999999987 3688899999999999998764

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=93.62  E-value=0.036  Score=35.01  Aligned_cols=30  Identities=23%  Similarity=0.452  Sum_probs=22.3

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      ..-.||.||+.+....+         ...+.|+.||..+
T Consensus        18 ~~k~CP~CG~~~fm~~~---------~~R~~C~kCG~t~   47 (50)
T 3j20_Y           18 KNKFCPRCGPGVFMADH---------GDRWACGKCGYTE   47 (50)
T ss_dssp             SSEECSSSCSSCEEEEC---------SSEEECSSSCCEE
T ss_pred             ecccCCCCCCceEEecC---------CCeEECCCCCCEE
Confidence            46679999997654431         3679999999875

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=93.61  E-value=0.14  Score=45.76  Aligned_cols=47  Identities=13%  Similarity=0.287  Sum_probs=42.0

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .++++||-||-|.|..++.+.+... .+|+.|||++.+++.|++.+..
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~  250 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRK  250 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchh
Confidence            3468999999999999999998765 5999999999999999999764

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=93.23  E-value=0.083  Score=34.31  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=25.2

Q ss_pred             ccCCcccCCCCCC-CcccccCCCccccccCCCceECCCCCccccc
Q 026825           67 TSKNVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        67 ~~~~~l~CPiC~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      +-+..+.||.|++ ++....         ..+.+.|..||.++..
T Consensus         7 ~ll~~~~Cp~C~~~~lv~D~---------~~ge~vC~~CGlVl~e   42 (58)
T 1dl6_A            7 DALPRVTCPNHPDAILVEDY---------RAGDMICPECGLVVGD   42 (58)
T ss_dssp             CCCSCCSBTTBSSSCCEECS---------SSCCEECTTTCCEECC
T ss_pred             hccccccCcCCCCCceeEeC---------CCCeEEeCCCCCEEec
Confidence            3456679999998 544321         4568999999998754

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=92.75  E-value=0.028  Score=38.99  Aligned_cols=42  Identities=26%  Similarity=0.644  Sum_probs=24.4

Q ss_pred             CCcccCCCCCCCcccccCC-----Cccccc-----------cCCCceECCCCCccccc
Q 026825           69 KNVLACPICYKPLTWIGDS-----SLSIES-----------AAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~-----~~~~~~-----------~~~~~l~C~~C~~~y~~  110 (232)
                      -+...||+||.+|.+.+--     ..+...           +..-.+.||.||..|-.
T Consensus         6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG   63 (95)
T 2k5c_A            6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYG   63 (95)
T ss_dssp             --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEET
T ss_pred             cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhc
Confidence            3567899999987654310     011111           11225799999988654

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=92.37  E-value=0.2  Score=42.86  Aligned_cols=51  Identities=8%  Similarity=-0.025  Sum_probs=38.9

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh----C-CCCeEEEEeCCHH--------------------------HHHHHHHHhhcc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS----G-LFSLVVALDYSEN--------------------------MLKQCYEFVQQE  224 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~----g-~~~~VvGvD~S~~--------------------------ml~~A~~~~~~~  224 (232)
                      ..++.|||+|+..|..+..++..    + .+.+|+++|..+.                          +++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34789999999999888877654    2 2568999996421                          477889998877


Q ss_pred             CC
Q 026825          225 SN  226 (232)
Q Consensus       225 ~~  226 (232)
                      +.
T Consensus       185 gl  186 (282)
T 2wk1_A          185 DL  186 (282)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=91.63  E-value=0.027  Score=42.45  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=23.0

Q ss_pred             cCCCceECCCCCcccccCCCcccccc
Q 026825           94 AAGSSLQCNTCKKTYSGVGTHFDMTA  119 (232)
Q Consensus        94 ~~~~~l~C~~C~~~y~~~~g~~d~~~  119 (232)
                      +..|.+.|++||+.|++.+|+++.+-
T Consensus        95 V~EG~L~Cp~cgr~ypI~~GIPNm~~  120 (125)
T 3q87_A           95 VVEGSLRCDMCGLIYPIKGSIVETVD  120 (125)
T ss_dssp             EEEEEEEETTTCCEEEEETTEEECSS
T ss_pred             EEEEEEECCCCCCEeeccCCcccHHH
Confidence            45679999999999999999999873

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=90.99  E-value=0.41  Score=41.69  Aligned_cols=47  Identities=19%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCC-CeE-EEEeCCHHHHHHHHHHhhcc
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLF-SLV-VALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~-~~V-vGvD~S~~ml~~A~~~~~~~  224 (232)
                      .-+++|+-||.|.+...+...|.. ..| .++|+++.+.+..+.+....
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~   58 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE   58 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC
Confidence            468999999999999999999842 256 69999999999999987653

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=90.53  E-value=0.25  Score=41.82  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=21.1

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS  198 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~  198 (232)
                      .++.+|||+||+.|.++..+++.
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~   94 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATM   94 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTS
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhh
Confidence            46899999999999999999887

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=90.24  E-value=0.092  Score=36.72  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=23.6

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      ..+.||-||.++....         ..+.+.|+.|+..+.
T Consensus        26 ~~y~Cp~CG~~~v~r~---------atGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQ---------GTGIWQCSYCDYKFT   56 (83)
T ss_dssp             SCEECSSSCCEEEEEE---------ETTEEEETTTCCEEE
T ss_pred             ccCcCCCCCCcceecc---------CCCeEECCCCCCEec
Confidence            5689999999765432         246899999998754

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=89.79  E-value=0.14  Score=36.70  Aligned_cols=28  Identities=25%  Similarity=0.549  Sum_probs=21.4

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      ..||.|+.+|.+.+           +.++|..|+..|..
T Consensus        33 ~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f~~   60 (101)
T 2jne_A           33 LHCPQCQHVLDQDN-----------GHARCRSCGEFIEM   60 (101)
T ss_dssp             CBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred             ccCccCCCcceecC-----------CEEECccccchhhc
Confidence            89999999998764           46677777776544

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=89.79  E-value=0.1  Score=33.57  Aligned_cols=40  Identities=18%  Similarity=0.483  Sum_probs=23.7

Q ss_pred             cccCCCCCCC-cccccCCCccccccCCCceECCCCCccccc
Q 026825           71 VLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        71 ~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      ...||.|++. +.....+..+.+..+...+.|.+|++.+..
T Consensus        15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            5789999983 222221122222333456899999987643

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.22  E-value=1  Score=38.55  Aligned_cols=46  Identities=22%  Similarity=0.335  Sum_probs=37.9

Q ss_pred             cCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ....++.+||-+|+|. |.++..+++. |.  +|+++|.+++.++.+++.
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~~l  209 (340)
T 3s2e_A          162 TDTRPGQWVVISGIGGLGHVAVQYARAMGL--RVAAVDIDDAKLNLARRL  209 (340)
T ss_dssp             TTCCTTSEEEEECCSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHT
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHc
Confidence            3456689999999975 8888888876 65  999999999999988763

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=89.06  E-value=0.66  Score=39.78  Aligned_cols=46  Identities=11%  Similarity=-0.042  Sum_probs=39.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHhh
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~-VvGvD~S~~ml~~A~~~~~  222 (232)
                      ...++||+-||.|.+...+...|.... |+++|+++.+.+.-+.+..
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~   61 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ   61 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC
Confidence            456899999999999999999987433 6999999999988887764

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=88.66  E-value=0.25  Score=34.28  Aligned_cols=27  Identities=37%  Similarity=0.992  Sum_probs=17.9

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      +.||.|++++.+.+           +..+|..|+.-|.
T Consensus         3 ~~CP~C~~~l~~~~-----------~~~~C~~C~~~~~   29 (81)
T 2jrp_A            3 ITCPVCHHALERNG-----------DTAHCETCAKDFS   29 (81)
T ss_dssp             CCCSSSCSCCEECS-----------SEEECTTTCCEEE
T ss_pred             CCCCCCCCccccCC-----------CceECccccccCC
Confidence            57899988887654           2455666665544

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=88.56  E-value=1.1  Score=39.05  Aligned_cols=48  Identities=27%  Similarity=0.389  Sum_probs=38.1

Q ss_pred             hcCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          172 YLKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .....++.+||-+|+|. |.++..+++. |. .+|+++|.+++.++.+++.
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          185 ALKVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             TTCCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHc
Confidence            34455689999999985 7888888876 54 2699999999999998764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=88.43  E-value=1.2  Score=38.79  Aligned_cols=56  Identities=14%  Similarity=0.188  Sum_probs=41.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .+.+.+...+...|+.+|||.......+...+.+..++-||+ +++++.-++.+.+.
T Consensus        88 ~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~  143 (334)
T 1rjd_A           88 AILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRES  143 (334)
T ss_dssp             HHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhc
Confidence            333444323468999999999988888877644458889999 77888777777654

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=88.19  E-value=0.56  Score=30.00  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=23.1

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      ....||.||+.+....         ..+.+.|..|+..+..
T Consensus        17 ~~~fCPkCG~~~~ma~---------~~dr~~C~kCgyt~~~   48 (55)
T 2k4x_A           17 KHRFCPRCGPGVFLAE---------HADRYSCGRCGYTEFK   48 (55)
T ss_dssp             SSCCCTTTTTTCCCEE---------CSSEEECTTTCCCEEC
T ss_pred             ccccCcCCCCceeEec---------cCCEEECCCCCCEEEe
Confidence            4688999999654332         1358999999888643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=88.00  E-value=0.9  Score=40.00  Aligned_cols=47  Identities=21%  Similarity=0.164  Sum_probs=37.9

Q ss_pred             hcCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH
Q 026825          172 YLKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .....++.+||.+|+|. |.++..+++. |. .+|+++|.+++.++.+++
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGA-ACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHT
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH
Confidence            34556789999999986 8888888876 53 389999999999988875

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=87.17  E-value=0.25  Score=30.99  Aligned_cols=40  Identities=18%  Similarity=0.453  Sum_probs=23.9

Q ss_pred             CCcccCCCCCCCcc-cccCCCccccccCCCceECCCCCccc
Q 026825           69 KNVLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        69 ~~~l~CPiC~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      ...+.||.|++.-. ....+..+.++.+...+.|.+|++.+
T Consensus         7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w   47 (50)
T 1tfi_A            7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence            45578999998422 11112233333344578999999865

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=86.98  E-value=1.3  Score=39.21  Aligned_cols=47  Identities=15%  Similarity=0.100  Sum_probs=33.5

Q ss_pred             CCeEEEEcCCcChHHHHH--------HHhC-------CCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          178 GGNIIDASCGSGLFSRIF--------AKSG-------LFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~l--------a~~g-------~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ..+|+|+|||+|..+..+        .++.       +.-+|+.-|+-.+.-+..=+.+...
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~  114 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPL  114 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCB
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhh
Confidence            478999999999888876        2221       3457888888887766666665543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=86.11  E-value=1.7  Score=37.65  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=37.5

Q ss_pred             hcCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          172 YLKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .....++.+||-+|+|. |..+..+++. |.  +|+++|.+++-++.+++.
T Consensus       184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          184 KGHLRAGDRVVVQGTGGVALFGLQIAKATGA--EVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             TTCCCTTCEEEEESSBHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEecCchhHHHHHHc
Confidence            34456789999999874 7777777776 65  999999999999988764

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=85.89  E-value=1.5  Score=40.28  Aligned_cols=57  Identities=21%  Similarity=0.221  Sum_probs=45.3

Q ss_pred             HHHHHHHhhcCCC------CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          164 KEFELMKGYLKPV------LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       164 ~~~~~l~~~l~~~------~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      .++..+..+++..      ..-++||+-||.|.+...|...|.. .|.++|+++.+.+.-+.+.
T Consensus        68 ~~~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~~-~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           68 KEFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGGQ-CVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             HHHHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTEE-EEEEECCCHHHHHHHHHHS
T ss_pred             HHHHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCCE-EEEEEeCCHHHHHHHHHhc
Confidence            4456666666541      2358999999999999999999872 5899999999998888876

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=85.61  E-value=0.16  Score=38.96  Aligned_cols=27  Identities=15%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             cCCCceECCCCCcccccCCCccccccc
Q 026825           94 AAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        94 ~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      +..+.+.|+.||..|++++|+++++.+
T Consensus       105 v~eg~L~C~~cg~~YPI~dGIP~mL~~  131 (141)
T 2j6a_A          105 IAEGEMKCRNCGHIYYIKNGIPNLLLP  131 (141)
T ss_dssp             EEEEEEECTTTCCEEEEETTEESSCCC
T ss_pred             ccCCEEECCCCCCcccccCCccCcCCc
Confidence            345789999999999999999999865

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=85.26  E-value=2.1  Score=36.77  Aligned_cols=46  Identities=28%  Similarity=0.338  Sum_probs=36.5

Q ss_pred             cCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ....++.+||-+|+|. |.++..+++. |.  +|+++|.+++-++.+++.
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~~l  211 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNC  211 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHT
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHh
Confidence            3445689999999874 6777777775 65  899999999999888753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=85.07  E-value=1.5  Score=34.31  Aligned_cols=46  Identities=17%  Similarity=0.110  Sum_probs=33.2

Q ss_pred             hcCCCCCCeEEEEcC--CcChHHHHHHH-hCCCCeEEEEeCCHHHHHHHHH
Q 026825          172 YLKPVLGGNIIDASC--GSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       172 ~l~~~~~~~ILDiGC--GtG~~~~~la~-~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .....++++||.+|+  |.|.....++. .|.  +|+++|.+++.++.+++
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHT
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH
Confidence            344556889999995  45655555444 476  99999999998877754

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=84.87  E-value=1.4  Score=32.31  Aligned_cols=38  Identities=16%  Similarity=0.324  Sum_probs=25.3

Q ss_pred             ccCCCCCCCc-ccccCCCccccccCCCceECCCCCcccc
Q 026825           72 LACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        72 l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      ..||.|++.- .....+..+.++.....+.|.+|++.+.
T Consensus        73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~  111 (113)
T 3h0g_I           73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE  111 (113)
T ss_dssp             SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred             cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence            8899999942 2222223444455566899999998874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=84.43  E-value=2.6  Score=36.28  Aligned_cols=48  Identities=27%  Similarity=0.387  Sum_probs=37.5

Q ss_pred             hcCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          172 YLKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .....++.+||-+|+|. |.++..+++. |. .+|+++|.+++-++.+++.
T Consensus       166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l  215 (356)
T 1pl8_A          166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEI  215 (356)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh
Confidence            34455689999999885 7888888876 43 3899999999988888753

>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A

Probab=84.40  E-value=0.73  Score=36.65  Aligned_cols=41  Identities=12%  Similarity=0.358  Sum_probs=26.6

Q ss_pred             CCcccCCCCCCCc-ccccCCCccccccCCCceECCCCCcccc
Q 026825           69 KNVLACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        69 ~~~l~CPiC~~~l-~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      ...+.||.|++.- .....+..+.+..+...+.|..||+.|.
T Consensus       135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~  176 (178)
T 3po3_S          135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK  176 (178)
T ss_dssp             BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred             cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence            4568999999842 2222223344445567899999998763

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=84.38  E-value=2.2  Score=36.34  Aligned_cols=46  Identities=17%  Similarity=0.113  Sum_probs=34.5

Q ss_pred             hcCCCCCCeEEEEcC--CcChHHHHHHH-hCCCCeEEEEeCCHHHHHHHHH
Q 026825          172 YLKPVLGGNIIDASC--GSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       172 ~l~~~~~~~ILDiGC--GtG~~~~~la~-~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      .....++++||..|+  |.|.....+++ .|.  +|+++|.+++.++.+++
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~  188 (333)
T 1v3u_A          140 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKIAYLKQ  188 (333)
T ss_dssp             TSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH
T ss_pred             hhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh
Confidence            344556899999998  45666655555 466  99999999999888843

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=84.20  E-value=2.7  Score=36.81  Aligned_cols=47  Identities=21%  Similarity=0.215  Sum_probs=37.5

Q ss_pred             cCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ....++.+||-+|+|. |.++..+++. |. .+|+++|.+++-++.+++.
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~~l  229 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQ  229 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHc
Confidence            4455689999999875 7888888886 43 3799999999999998653

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=84.09  E-value=0.77  Score=30.25  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=23.5

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~  111 (232)
                      -.+.|..|+.......          ...++|+.||.....+
T Consensus        20 v~Y~C~~Cg~~~~l~~----------~~~iRC~~CG~RILyK   51 (63)
T 3h0g_L           20 MIYLCADCGARNTIQA----------KEVIRCRECGHRVMYK   51 (63)
T ss_dssp             CCCBCSSSCCBCCCCS----------SSCCCCSSSCCCCCBC
T ss_pred             eEEECCCCCCeeecCC----------CCceECCCCCcEEEEE
Confidence            4589999999765432          3568999999876554

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=84.00  E-value=1.6  Score=38.00  Aligned_cols=44  Identities=23%  Similarity=0.206  Sum_probs=36.2

Q ss_pred             CCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH
Q 026825          174 KPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       174 ~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      ...++.+||-+|+|. |.++..+++. |.  +|+++|.+++-++.+++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence            445689999999984 7777777776 65  89999999999988876

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=83.89  E-value=1.3  Score=38.09  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=36.4

Q ss_pred             CCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH
Q 026825          174 KPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       174 ~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      ...++.+||-+|+|. |.++..+++. |.  +|+++|.+++-++.+++
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA--EVSVFARNEHKKQDALS  218 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTC--EEEEECSSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHh
Confidence            456689999999975 7788888776 65  99999999998888876

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=83.21  E-value=3.7  Score=36.52  Aligned_cols=46  Identities=9%  Similarity=0.004  Sum_probs=34.6

Q ss_pred             CCeEEEEcCCcChHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          178 GGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~-------g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      +-.|+|+|.|.|.+..-+.+.       ....+++-||+|+...+.=++++..
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            457999999999887665442       1123899999999988877777654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=83.11  E-value=2.6  Score=36.33  Aligned_cols=48  Identities=29%  Similarity=0.371  Sum_probs=38.3

Q ss_pred             hcCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          172 YLKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .....++.+||-+|+|. |.++..+++. |. ..|+++|.+++-++.+++.
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHTCCTTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh
Confidence            34455688999999875 7888888877 54 2499999999999999887

>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5

Probab=83.11  E-value=0.68  Score=34.87  Aligned_cols=31  Identities=29%  Similarity=0.711  Sum_probs=24.1

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      .+-.||.|++.....+          ...+.|+.|++.+..
T Consensus        26 ~lP~CP~C~seytYeD----------g~l~vCPeC~hEW~~   56 (138)
T 2akl_A           26 TLPPCPQCNSEYTYED----------GALLVCPECAHEWSP   56 (138)
T ss_dssp             CSCCCTTTCCCCCEEC----------SSSEEETTTTEEECT
T ss_pred             cCCCCCCCCCcceEec----------CCeEECCccccccCC
Confidence            3568999999776543          357999999999953

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=83.06  E-value=1.6  Score=38.82  Aligned_cols=33  Identities=15%  Similarity=0.014  Sum_probs=25.8

Q ss_pred             CCeEEEEcCCcChHHHHHHHh-----------------CCCCeEEEEeCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKS-----------------GLFSLVVALDYS  210 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~-----------------g~~~~VvGvD~S  210 (232)
                      ..+|+|+||++|..+..+...                 .+.-+|+.-|+-
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp  102 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF  102 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence            578999999999888876665                 233478889988

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=82.61  E-value=1.5  Score=37.51  Aligned_cols=49  Identities=10%  Similarity=0.204  Sum_probs=38.2

Q ss_pred             HhhcCCCCCCeEEEEcCC--cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          170 KGYLKPVLGGNIIDASCG--SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       170 ~~~l~~~~~~~ILDiGCG--tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .+.....++.+||-+|+|  .|..+..+++. |.  +|+++|.+++-++.+++.
T Consensus       137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~l  188 (340)
T 3gms_A          137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF--RLIAVTRNNKHTEELLRL  188 (340)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHH
T ss_pred             HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHhC
Confidence            344555678999999997  56777766665 76  999999999988888764

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=82.48  E-value=3.6  Score=32.17  Aligned_cols=42  Identities=12%  Similarity=0.067  Sum_probs=33.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY  209 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~  209 (232)
                      .+....... -.+-|||+|-|+|+.-..+.+..++..|+.+|-
T Consensus        31 ~~a~~~v~~-~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           31 EHAIAQTAG-LSGPVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             HHHHHHTTT-CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             HHHHHHhcC-CCCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            444444443 367899999999999999999988889999985

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=82.46  E-value=2  Score=36.57  Aligned_cols=49  Identities=16%  Similarity=0.152  Sum_probs=37.1

Q ss_pred             hhcCCCCCCeEEEEcC--CcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHh
Q 026825          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       171 ~~l~~~~~~~ILDiGC--GtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +.....++.+||-+|+  |.|..+..+++. |.  +|+++|.+++-++.+.+.+
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~~~  194 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGC--RVVGIAGGAEKCRFLVEEL  194 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc
Confidence            3445567899999998  456777766665 66  9999999999888885444

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=82.13  E-value=0.52  Score=31.83  Aligned_cols=32  Identities=19%  Similarity=0.448  Sum_probs=23.4

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g  113 (232)
                      .+.|| |+..+...+         ......|+ ||......+-
T Consensus         4 vv~C~-C~~~~~~~~---------~~kT~~C~-CG~~~~~~k~   35 (71)
T 1gh9_A            4 IFRCD-CGRALYSRE---------GAKTRKCV-CGRTVNVKDR   35 (71)
T ss_dssp             EEEET-TSCCEEEET---------TCSEEEET-TTEEEECCSS
T ss_pred             EEECC-CCCEEEEcC---------CCcEEECC-CCCeeeeceE
Confidence            57899 999766554         23468999 9999766543

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=82.13  E-value=0.5  Score=34.93  Aligned_cols=32  Identities=28%  Similarity=0.643  Sum_probs=23.2

Q ss_pred             CCcccCCCCCCC-cccccCCCccccccCCCceECCCCCccccc
Q 026825           69 KNVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        69 ~~~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      -....||.|+.. +....          .++++|..|+..+..
T Consensus        58 ~akytCPfCGk~~vKR~a----------vGIW~C~~Cgk~fAG   90 (116)
T 3cc2_Z           58 NEDHACPNCGEDRVDRQG----------TGIWQCSYCDYKFTG   90 (116)
T ss_dssp             HSCEECSSSCCEEEEEEE----------TTEEEETTTCCEEEC
T ss_pred             ccCCcCCCCCCceeEecC----------ceeEECCCCCCEEEC
Confidence            366899999983 33332          378999999988643

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=82.06  E-value=2.1  Score=36.60  Aligned_cols=48  Identities=19%  Similarity=0.145  Sum_probs=36.7

Q ss_pred             hcCCCCCCeEEEEcC--CcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHh
Q 026825          172 YLKPVLGGNIIDASC--GSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       172 ~l~~~~~~~ILDiGC--GtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      .....++.+||-+|+  |.|..+..+++. |.  +|+++|.+++.++.+++.+
T Consensus       150 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~--~V~~~~~~~~~~~~~~~~~  200 (345)
T 2j3h_A          150 VCSPKEGETVYVSAASGAVGQLVGQLAKMMGC--YVVGSAGSKEKVDLLKTKF  200 (345)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTS
T ss_pred             HhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc
Confidence            344556899999998  466776666664 66  9999999999888887544

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=81.97  E-value=3.1  Score=35.58  Aligned_cols=44  Identities=23%  Similarity=0.245  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEEcC--CcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH
Q 026825          174 KPVLGGNIIDASC--GSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       174 ~~~~~~~ILDiGC--GtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      ...++.+||-+|+  |.|..+..+++. |.  +|+++|.+++.++.+++
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~--~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGA--RVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh
Confidence            4456899999998  567777777665 66  99999999999988875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=81.86  E-value=3  Score=30.80  Aligned_cols=40  Identities=18%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCc-C-hHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 026825          178 GGNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       178 ~~~ILDiGCGt-G-~~~~~la~~g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      ..+|+=+|+|. | .++..|.+.|.  .|+++|.+++.++.+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~   48 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE   48 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH
Confidence            46799999874 4 44555666677  99999999999887765

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=81.31  E-value=0.67  Score=32.22  Aligned_cols=32  Identities=25%  Similarity=0.623  Sum_probs=22.8

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      ..+.||.|+..-...         ..-++++|..|+..+..
T Consensus        34 ~ky~CpfCGk~~vkR---------~a~GIW~C~kCg~~~AG   65 (83)
T 3j21_i           34 QKHTCPVCGRKAVKR---------ISTGIWQCQKCGATFAG   65 (83)
T ss_dssp             SCBCCSSSCSSCEEE---------EETTEEEETTTCCEEEC
T ss_pred             cccCCCCCCCceeEe---------cCcCeEEcCCCCCEEeC
Confidence            568899999963322         12378999999888643

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=81.22  E-value=0.97  Score=30.56  Aligned_cols=32  Identities=34%  Similarity=0.620  Sum_probs=22.9

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      ..+.||.|+..-....         .-++++|..|+..+..
T Consensus        25 ~ky~C~fCgk~~vkR~---------a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           25 ARYDCSFCGKKTVKRG---------AAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             SCBCCSSCCSSCBSBC---------SSSCBCCSSSCCCCCC
T ss_pred             cCccCCCCCCceeEec---------CCCeEECCCCCCEEeC
Confidence            5688999998643221         2478999999887643

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=81.19  E-value=1.4  Score=32.25  Aligned_cols=39  Identities=21%  Similarity=0.258  Sum_probs=27.5

Q ss_pred             CcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCC
Q 026825           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (232)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g  113 (232)
                      .+..||.|++-|....+..     -....+.|.+|+..+.....
T Consensus         3 ~m~FCp~Cgn~L~~~~~~~-----~~~~~~~C~~C~y~~~~~~~   41 (113)
T 3h0g_I            3 NFQYCIECNNMLYPREDKV-----DRVLRLACRNCDYSEIAATS   41 (113)
T ss_dssp             CCCCCSSSCCCCEECCCTT-----TCCCCEECSSSCCEECCSCS
T ss_pred             cceeCcCCCCEeeEcccCC-----CCeeEEECCCCCCeEEcCCC
Confidence            3678999999887664310     12347999999998877653

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=80.60  E-value=4  Score=34.87  Aligned_cols=47  Identities=17%  Similarity=0.163  Sum_probs=36.8

Q ss_pred             CCCCCCeEEEEcCCc-ChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       174 ~~~~~~~ILDiGCGt-G~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ...++.+||-+|+|. |.++..+++.....+|+++|.+++-++.+++.
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l  215 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV  215 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            345688999999975 78888888762124999999999999988764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=80.18  E-value=2.5  Score=36.46  Aligned_cols=45  Identities=13%  Similarity=0.118  Sum_probs=35.8

Q ss_pred             cCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYE  219 (232)
Q Consensus       173 l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~  219 (232)
                      ....++.+||-+|+|. |.++..+++. |.  +|+++|.+++-++.+++
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga--~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRKREDAMK  221 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHH
Confidence            3445689999999863 6777777765 76  89999999998888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	2e-08
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	3e-04
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	6e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	0.001
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.001
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.001
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	0.003

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 27/163 (16%)

Query: 72  LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMS 131
            +CP+C++PL+              +S  C    +       + ++      +      S
Sbjct: 2   FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 50

Query: 132 PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSG 189
              E  +            R+ F+  G   P ++     ++  L       ++D  CG G
Sbjct: 51  A--EMMQ-----------ARRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEG 96

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEYE 232
            ++  FA +        LD S+  +K   +   Q +       
Sbjct: 97  YYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH 139

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
           LK      ++D + G G  +  FA       VVA D +E++LK    F++ 
Sbjct: 13  LKG--NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG 59

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
           L++ Y K   G +++D  CG G     + ++G       +D +E  +     
Sbjct: 17  LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARV 65

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 154 FVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
                 PGP       L+    +P      +D  CG+G  +   A       V A+D + 
Sbjct: 8   IKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYAIDRNP 65

Query: 212 NMLKQCYE 219
             +     
Sbjct: 66  EAISTTEM 73

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 12/92 (13%)

Query: 135 EFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFSR 193
             +  P        G          P   +   +        V G  +ID   G  ++  
Sbjct: 21  NNYAPPRGDLCNPNGVG--------PWKLRCLAQTFAT--GEVSGRTLIDIGSGPTVYQ- 69

Query: 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQES 225
           + +    F  +   D+ E   ++   ++Q+E 
Sbjct: 70  LLSACSHFEDITMTDFLEVNRQELGRWLQEEP 101

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 7/56 (12%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
           +++ +      GN+++     G F+    +   F+ +  ++ SE  +      ++ 
Sbjct: 11  MVRAFTPFFRPGNLLELGSFKGDFTSRLQE--HFNDITCVEASEEAISHAQGRLKD 64

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY 231
              ++D  CG+G+ S   AK+G    V+ +D SE + +        +       
Sbjct: 36  DKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTITL 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.81
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.32
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.22
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.21
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.2
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.18
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.18
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.15
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.12
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.1
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.09
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.09
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.07
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.04
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.02
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.01
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.0
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.99
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.97
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.97
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.97
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.93
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.92
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.88
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.87
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.84
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.81
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.8
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.8
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.79
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.78
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.76
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.76
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.75
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.74
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.74
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.73
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.71
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.69
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.69
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.66
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.66
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.63
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.62
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.61
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.58
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.57
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.56
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.56
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.55
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.54
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.53
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.5
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.5
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.47
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.46
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.44
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.43
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.43
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.43
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.42
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.38
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.31
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.27
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.23
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.22
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.21
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	98.17
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	98.15
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.11
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	98.08
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.05
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.05
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.9
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.86
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.8
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.76
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.62
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.51
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.47
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.33
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.26
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.22
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.15
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.08
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.72
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.72
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.56
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.55
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.55
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.49
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.46
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.4
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.18
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.05
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.03
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	95.86
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	95.82
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	95.55
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.38
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.32
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.07
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.07
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	94.99
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	94.97
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.74
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.49
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.29
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.12
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	94.03
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	93.92
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.48
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	93.36
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	93.16
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	93.0
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.24
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.01
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.99
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	91.87
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.81
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	91.74
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	91.02
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.35
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.04
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	90.01
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.91
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	89.38
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	88.87
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	88.47
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.24
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	87.77
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	87.25
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.52
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	85.26
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	84.82
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	84.58
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.92
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.69
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.69
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	83.12
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.84
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	82.46
d1neea2	37	Zinc-binding domain of translation initiation fact	82.4
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.84
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	80.98
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	80.9
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	80.76
d1rqga3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro	80.58

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=9.4e-20  Score=154.93  Aligned_cols=128  Identities=18%  Similarity=0.254  Sum_probs=94.9

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccccCCcccccccchhhhhccCchhhHHHHHHH
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW  150 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~~~~~~Yd~~~~~~~~~~~~~~~s~~ye~~w  150 (232)
                      .|+||+|+++|...+           +.+.|.+||.++..++||++++.......|...         +..  ..  ...
T Consensus         1 sf~CP~C~~~L~~~~-----------~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~---------~~~--~~--~~a   56 (268)
T d1p91a_           1 SFSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPG---------DSA--EM--MQA   56 (268)
T ss_dssp             CBBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCS---------SSH--HH--HHH
T ss_pred             CccCCCCChhhhcCC-----------CeEECCCCCccccccCceEecccccccccCCCC---------CCH--HH--HHH
Confidence            489999999987654           479999999998999999999876544443333         100  00  112


Q ss_pred             HHHHHhcCCCCcH--HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          151 RQNFVWGGFPGPE--KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       151 r~~f~~~g~~~~~--~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      |+.++..|++.+.  .....+...++. ++.+|||||||+|.++..+++.+++.+++|+|+|+.|++.|+++..+
T Consensus        57 r~~~l~~g~~~~l~~~~~~~l~~~~~~-~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~  130 (268)
T d1p91a_          57 RRAFLDAGHYQPLRDAIVAQLRERLDD-KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ  130 (268)
T ss_dssp             HHHHHTTTTTHHHHHHHHHHHHHHSCT-TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTT
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHhcCC-CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccccc
Confidence            5666777777653  223444454443 57899999999999999999998777999999999999999988653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.32  E-value=1.4e-12  Score=102.84  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=48.0

Q ss_pred             HhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...|...++.+|||+|||+|..+..|+++|+  +|+|+|+|+.|++.|++++++.+
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~   66 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQP   66 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhcccc
Confidence            3445666789999999999999999999998  99999999999999999987643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-11  Score=101.49  Aligned_cols=79  Identities=16%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcCCCCcHH-HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          144 FIYERGWRQNFVWGGFPGPEK-EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       144 ~~ye~~wr~~f~~~g~~~~~~-~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ..+++.|+..-.......+.. ..+.+.+.+...++.+|||+|||+|..+..|++.|+  +|+|||+|+.|++.|+++..
T Consensus        11 e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~   88 (229)
T d2bzga1          11 EEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQN   88 (229)
T ss_dssp             HHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhh
Confidence            456667765422111222322 335566666766789999999999999999999999  99999999999999999976


Q ss_pred             cc
Q 026825          223 QE  224 (232)
Q Consensus       223 ~~  224 (232)
                      ..
T Consensus        89 ~~   90 (229)
T d2bzga1          89 LS   90 (229)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.21  E-value=1e-11  Score=101.76  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.+.+.++..++.+|||||||+|.++..+++++.  +|+|||+|+.|++.|++++...+.
T Consensus         6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~   63 (234)
T d1xxla_           6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGV   63 (234)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccc
Confidence            4566777778899999999999999999999987  999999999999999999887654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.20  E-value=1.5e-11  Score=99.85  Aligned_cols=61  Identities=21%  Similarity=0.270  Sum_probs=52.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK  229 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~  229 (232)
                      ..+++.++..++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+..+.
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i   65 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQV   65 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSE
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccc
Confidence            4455667777789999999999999999999987  999999999999999999887665443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=5.6e-11  Score=97.62  Aligned_cols=54  Identities=24%  Similarity=0.315  Sum_probs=46.9

Q ss_pred             HhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .......+.++|||||||+|.++..|++.|.  +|+|||+|++|++.|++++++.+
T Consensus        34 ~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~~   87 (251)
T d1wzna1          34 FKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN   87 (251)
T ss_dssp             HHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeecccccccccccccccc
Confidence            3334455678999999999999999999998  99999999999999999988654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.18  E-value=3.9e-11  Score=95.45  Aligned_cols=63  Identities=17%  Similarity=0.110  Sum_probs=55.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++....+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.|++.|++++++.+..
T Consensus        19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl~   81 (186)
T d1l3ia_          19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLG   81 (186)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCCC
Confidence            34456777788888899999999999999999998876  9999999999999999999987753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=5.4e-11  Score=95.72  Aligned_cols=54  Identities=33%  Similarity=0.686  Sum_probs=47.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+.+++++  +.+|||||||+|.++..+++.+.  +|+|+|+|++|++.|++++.+.+
T Consensus        30 ~~~~~l~~--~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~~   83 (226)
T d1ve3a1          30 LLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE   83 (226)
T ss_dssp             HHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCC--CCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhcccc
Confidence            44455654  78999999999999999999987  99999999999999999987654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.2e-10  Score=96.07  Aligned_cols=64  Identities=19%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ...+..+.+.+...++.+|||||||+|.++..+++... .+|+|||+|+.|++.|++++...+..
T Consensus        19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~   82 (245)
T d1nkva_          19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVS   82 (245)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhcc
Confidence            34456677788888899999999999999999988732 39999999999999999998877643

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=9.8e-11  Score=99.12  Aligned_cols=58  Identities=24%  Similarity=0.367  Sum_probs=49.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ...++...++..++++|||+|||+|.++..|++.|.  +|+|+|+|++||+.|+++..+.
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~  101 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNR  101 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhc
Confidence            344555666656678999999999999999999998  9999999999999999987654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.09  E-value=1.1e-10  Score=93.25  Aligned_cols=49  Identities=27%  Similarity=0.316  Sum_probs=44.5

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+++|||||||+|.++..|+++|+  +|+|+|+|+.|++.|++++++.+.
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~~   77 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEGL   77 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhccc
Confidence            3467999999999999999999998  999999999999999999887654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.09  E-value=7.5e-11  Score=97.10  Aligned_cols=47  Identities=19%  Similarity=0.300  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++++|||||||+|.++..|+++|.  +|+|||+|+.||+.|+++++..+
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~   83 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG   83 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccC
Confidence            468999999999999999999998  99999999999999999987654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.07  E-value=2.1e-10  Score=93.24  Aligned_cols=50  Identities=16%  Similarity=0.331  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~--g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||||||+|..+..+++.  .++.+|+|+|+|+.|++.|++++++.+.
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~   90 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS   90 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc
Confidence            4889999999999999999875  2345999999999999999999886553

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.04  E-value=3.4e-10  Score=95.12  Aligned_cols=52  Identities=17%  Similarity=0.140  Sum_probs=45.7

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+..++.+|||||||+|.++..++++ +.  +|+|||+|+.|++.|+++....+.
T Consensus        63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~i~~a~~~~~~~gl  115 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYNNQAGL  115 (282)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCCEEEEeCCCCcHHHhhhhccCCc--EEEEEeccchhhhhhhcccccccc
Confidence            34567899999999999999999887 65  999999999999999999887654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=1.8e-10  Score=96.46  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=50.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +..++.+.....  ++.+|||+|||+|.++..+++.|.  +|+|+|+|+.|++.|+++++.++.
T Consensus       108 ~l~l~~l~~~~~--~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n~~  167 (254)
T d2nxca1         108 RLALKALARHLR--PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGV  167 (254)
T ss_dssp             HHHHHHHHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTC
T ss_pred             hHHHHHHHhhcC--ccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHcCC
Confidence            333455555544  489999999999999999999887  999999999999999999987664

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=3.4e-10  Score=92.05  Aligned_cols=51  Identities=29%  Similarity=0.410  Sum_probs=44.0

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      +.+.++  .+.+|||+|||+|.++..+++.|.  +|+|+|+|+.|++.|+++...
T Consensus        36 ~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~   86 (246)
T d2avna1          36 LEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGVK   86 (246)
T ss_dssp             HHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTCS
T ss_pred             HHHhcC--CCCEEEEECCCCchhcccccccce--EEEEeeccccccccccccccc
Confidence            344444  378999999999999999999987  999999999999999998643

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.00  E-value=6e-10  Score=88.87  Aligned_cols=59  Identities=15%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +.+.+.+...++++|||+|||+|.++..+++.++  +|+|+|+|+.|++.|+++++..+..
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~  100 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLD  100 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCc
Confidence            4466677777899999999999999999999887  9999999999999999998876543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.99  E-value=3.6e-10  Score=91.82  Aligned_cols=56  Identities=20%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .++..++.+|||+|||+|..+..+++..++++|+|||+|+.|++.|++++++.+|+
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni  106 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNI  106 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSE
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCc
Confidence            35667899999999999999999999866679999999999999999999876643

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.97  E-value=5.3e-10  Score=92.53  Aligned_cols=48  Identities=17%  Similarity=0.309  Sum_probs=42.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.+|||||||+|..+..+++.+. ++|+|||+|+.|++.|++++.+.+
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~   71 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMK   71 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSC
T ss_pred             CcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcC
Confidence            488999999999999999998875 389999999999999999987644

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.97  E-value=4.3e-10  Score=92.66  Aligned_cols=56  Identities=13%  Similarity=0.205  Sum_probs=50.1

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .++..++.+|||+|||+|..+..+++.++++.|+|||+|+.|++.|++++...++.
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni  124 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENI  124 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTE
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhccc
Confidence            45667899999999999999999999987789999999999999999998876654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=9.9e-10  Score=92.95  Aligned_cols=60  Identities=22%  Similarity=0.294  Sum_probs=53.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++.+.+.+...++.+|||||||+|.++..+++. |.  +|+|||+|+++++.|++++++.++.
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~--~v~gi~ls~~q~~~a~~~~~~~~l~  101 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASIDTN  101 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSCCS
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce--eEEEecchHHHHHHHHHHHHhhccc
Confidence            356777788888999999999999999999877 65  9999999999999999999887753

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.93  E-value=4.8e-10  Score=91.26  Aligned_cols=46  Identities=13%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .++++|||||||+|.++..+++.|.  +|+|||+|++|++.|+++...
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~   64 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD   64 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccccc
Confidence            3477999999999999999999987  899999999999999988653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.6e-10  Score=91.75  Aligned_cols=51  Identities=18%  Similarity=0.240  Sum_probs=42.9

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..++.+|||||||+|.++..++..+. .+|+|||+|++||+.|+++++..+.
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~  108 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGK  108 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGG
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccc
Confidence            34578999999999999998766544 3899999999999999999876543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=2.9e-09  Score=86.41  Aligned_cols=62  Identities=18%  Similarity=0.277  Sum_probs=53.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ..+.+.+...++.+|||||||+|.++..+++. +..++|+++|+++.|++.|+++++..+..+
T Consensus        65 a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n  127 (213)
T d1dl5a1          65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN  127 (213)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc
Confidence            44566777888999999999999999999887 566799999999999999999998766543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=3.6e-09  Score=89.68  Aligned_cols=61  Identities=25%  Similarity=0.333  Sum_probs=53.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      .+.+.+.+...++.+|||||||.|.++..+++. |.  +|+||++|+++++.|++++.+.++.+
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~--~v~git~s~~Q~~~a~~~~~~~g~~~  112 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV--NVVGLTLSKNQANHVQQLVANSENLR  112 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTCCCCS
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc--ceEEEeccHHHHHHHHHHHHhhhhhh
Confidence            466777888889999999999999999987777 55  99999999999999999998877653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=5.2e-09  Score=88.93  Aligned_cols=60  Identities=22%  Similarity=0.217  Sum_probs=52.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+.+.+.+...++.+|||||||.|.++..+++. |.  +|+||++|+++++.|++++...++.
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~--~v~git~s~~q~~~a~~~~~~~~l~  110 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV--NVIGLTLSENQYAHDKAMFDEVDSP  110 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc--ceeeccchHHHHHHHHHHHHhhccc
Confidence            466777788888999999999999999988866 65  9999999999999999999987754

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.7e-09  Score=86.35  Aligned_cols=55  Identities=5%  Similarity=0.266  Sum_probs=45.7

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +...+.. ++++|||||||+|..+..+++.+. .+|+|||+|+.|++.|++++.+.+
T Consensus        46 la~~~~~-~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~  100 (229)
T d1zx0a1          46 LAAAASS-KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT  100 (229)
T ss_dssp             HHHHHTT-TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCS
T ss_pred             HHHhhcc-CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcc
Confidence            3444433 588999999999999999998754 389999999999999999987654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=6.5e-09  Score=87.26  Aligned_cols=63  Identities=24%  Similarity=0.284  Sum_probs=55.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .....+...+...++.+|||+|||+|.++..+++. ++.++|+|+|+++.|++.|++++...+.
T Consensus        90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~  153 (266)
T d1o54a_          90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL  153 (266)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc
Confidence            34567777888889999999999999999999987 5667999999999999999999988764

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.80  E-value=4.8e-09  Score=86.10  Aligned_cols=56  Identities=14%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .++..++.+|||+|||+|.++..+++. |+.++|+|+|+|+.|++.++++++..++.
T Consensus        68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~  124 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNI  124 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTE
T ss_pred             ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCc
Confidence            455678999999999999999999998 77789999999999999999998876653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.79  E-value=4.7e-09  Score=87.26  Aligned_cols=59  Identities=12%  Similarity=0.061  Sum_probs=48.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+++.++..+..+|||+|||+|.++..++..+. .+|+|||+|+.|++.|++++...++
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~  141 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGMPV  141 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTSSE
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccccccc
Confidence            4455566666788999999999999998776643 2899999999999999999875443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=9.2e-09  Score=84.11  Aligned_cols=58  Identities=21%  Similarity=0.386  Sum_probs=48.5

Q ss_pred             HHHhhc--CCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          168 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       168 ~l~~~l--~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+.+.|  ...++.+|||||||+|+.+..+++. ++.++|+|+|++++|++.|++++++.+
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~  125 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD  125 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccC
Confidence            344455  4467899999999999999999887 666799999999999999999987654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.76  E-value=8.7e-09  Score=85.74  Aligned_cols=61  Identities=15%  Similarity=0.124  Sum_probs=49.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..++..++...++.+|||+|||+|.++..+++. ++.++|+++|+++++++.|++++.+.+.
T Consensus        74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~  135 (250)
T d1yb2a1          74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD  135 (250)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC
Confidence            345666788888999999999999999999987 6667999999999999999999987543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.76  E-value=6.8e-09  Score=83.44  Aligned_cols=50  Identities=20%  Similarity=0.215  Sum_probs=44.0

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      +....+++|||+|||+|.++..++..|. .+|+|+|+++.+++.|++++..
T Consensus        44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~   93 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGG   93 (197)
T ss_dssp             HTSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTT
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcccc
Confidence            4445689999999999999999999886 3899999999999999998764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.75  E-value=1.6e-08  Score=81.29  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=46.8

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ......+++|||+|||+|.++..++..|+ .+|+|+|+++.+++.|++++...+.
T Consensus        41 ~~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~   94 (201)
T d1wy7a1          41 SLGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKG   94 (201)
T ss_dssp             HTTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTT
T ss_pred             hcCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCC
Confidence            34455689999999999999999988886 4899999999999999999887653

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.74  E-value=1.3e-08  Score=85.30  Aligned_cols=61  Identities=15%  Similarity=0.190  Sum_probs=54.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .....+...+...++.+|||+|||+|.++..|++. ++.++|+++|++++|++.|++++...
T Consensus        83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~  144 (264)
T d1i9ga_          83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC  144 (264)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhh
Confidence            34567777888888999999999999999999998 77789999999999999999998753

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.74  E-value=8.6e-09  Score=83.21  Aligned_cols=51  Identities=14%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ...|||||||+|.++..+++..++..++|+|+++.|+..|.+++.+.+..+
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N   80 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN   80 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC
Confidence            458999999999999999999988899999999999999999998877654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.73  E-value=1.2e-08  Score=85.79  Aligned_cols=52  Identities=21%  Similarity=0.240  Sum_probs=44.5

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~-~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...++.+|||||||+|.++..+++... +.+|+|+|+|+.|++.|++++...+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~   76 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP   76 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc
Confidence            345678999999999999999988633 3589999999999999999988754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.71  E-value=2e-08  Score=82.21  Aligned_cols=58  Identities=19%  Similarity=0.284  Sum_probs=51.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.+...++.+|||||||+|+++..|++.+.  +|+++|+++.+++.|++++.+.+|
T Consensus        60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~~n  117 (224)
T d1vbfa_          60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYNN  117 (224)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhcccc
Confidence            3456677778899999999999999999999986  999999999999999999876544

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.7e-08  Score=89.34  Aligned_cols=59  Identities=10%  Similarity=-0.027  Sum_probs=49.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+..+.+.+...++.++||||||+|.++..++.....++|+|||+|+.|++.|++++.+
T Consensus       204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e  262 (406)
T d1u2za_         204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEE  262 (406)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            34556666777889999999999999999998873334899999999999999998865

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.69  E-value=1.4e-08  Score=81.87  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ...|||||||+|.++..+++..++..++|+|+++.|+..|.+++.+.+..+
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N   82 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN   82 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc
Confidence            568999999999999999999888899999999999999999998876644

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.2e-08  Score=85.20  Aligned_cols=60  Identities=15%  Similarity=0.268  Sum_probs=53.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ....+...+...++.+|||+|||+|.++..|++. |++++|+++|++++|++.|++++++.
T Consensus        86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~  146 (324)
T d2b25a1          86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW  146 (324)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHh
Confidence            3456777788888999999999999999999988 77789999999999999999998753

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.66  E-value=4.2e-08  Score=76.74  Aligned_cols=49  Identities=20%  Similarity=0.184  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++.+|||+|||+|.++..++.+|.  +|+++|.++.+++.++++++..+..
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~~~~   89 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGLG   89 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTCC
T ss_pred             CCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhhccc
Confidence            488999999999999999999998  8999999999999999999877653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.6e-08  Score=84.15  Aligned_cols=58  Identities=12%  Similarity=0.022  Sum_probs=49.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       166 ~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ...+.+.+...++.+|||||||+|.++..++......+++|||+|+.|++.|++.+++
T Consensus       140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~  197 (328)
T d1nw3a_         140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE  197 (328)
T ss_dssp             HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            4566677777789999999999999999998875445899999999999999987654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4.9e-09  Score=85.93  Aligned_cols=49  Identities=14%  Similarity=0.354  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++.+.+
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhcc
Confidence            3577999999999998877776654 379999999999999999988654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=5.4e-08  Score=81.87  Aligned_cols=51  Identities=16%  Similarity=0.117  Sum_probs=46.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+.+|||+|||+|.++..++...++.+|+|+|+|+.+++.|++++...+..
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~  158 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK  158 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc
Confidence            467899999999999999999988889999999999999999999887653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.8e-08  Score=82.06  Aligned_cols=55  Identities=22%  Similarity=0.399  Sum_probs=42.6

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +.+.....++++|||||||+|.++..+++.|+ .+|+|+|.|+.|+. |++...+.+
T Consensus        27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~   81 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNK   81 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTT
T ss_pred             HHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhC
Confidence            34444445689999999999999999999986 48999999999875 455544443

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=8.1e-08  Score=76.65  Aligned_cols=59  Identities=22%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..+..++.+.+++.+||++||+|.++..+.+..++++|+|+|.++.|++.|+++++..+
T Consensus        13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~   71 (192)
T d1m6ya2          13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS   71 (192)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT
T ss_pred             HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc
Confidence            34566777788999999999999999999998767899999999999999999987653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=5.2e-08  Score=83.52  Aligned_cols=49  Identities=27%  Similarity=0.467  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++++|||||||+|.++..++++|+ .+|+|+|.|+ |+..|+++..+.+..
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~~~   86 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNGFS   86 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTTCT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhCcc
Confidence            588999999999999999999986 4999999996 778899888876653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.5e-08  Score=82.24  Aligned_cols=51  Identities=18%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHh------CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKS------GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~------g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      +..+|||||||+|.++..+++.      +....++|||+|+.|++.|++++++..+.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~   96 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL   96 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc
Confidence            3448999999999988777654      22236899999999999999998765543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.55  E-value=1.1e-07  Score=72.66  Aligned_cols=50  Identities=18%  Similarity=0.226  Sum_probs=45.3

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+|||+|||+|.++..++.+|+ .+|+++|.++.+++.+++++...+.
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~   62 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKA   62 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTC
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhccc
Confidence            3588999999999999999999987 4999999999999999999987654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=4.6e-08  Score=77.73  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=32.8

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +.+|||||||+|.++..+    .  +++|||+|+.|++.|+++
T Consensus        37 ~~~vLDiGcG~G~~~~~~----~--~~~giD~s~~~~~~a~~~   73 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPL----K--IKIGVEPSERMAEIARKR   73 (208)
T ss_dssp             SSCEEEETCTTSTTHHHH----T--CCEEEESCHHHHHHHHHT
T ss_pred             CCeEEEECCCCccccccc----c--eEEEEeCChhhccccccc
Confidence            568999999999998776    2  579999999999999986

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.53  E-value=9.1e-08  Score=78.90  Aligned_cols=59  Identities=12%  Similarity=0.171  Sum_probs=50.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..+.+.++..+.++|||||||+|.++..++++.++.+++++|+ +.|++.+++++.+.+.
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~  128 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL  128 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc
Confidence            4555566656678999999999999999999988789999998 5699999999987764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.50  E-value=1.8e-07  Score=76.82  Aligned_cols=62  Identities=15%  Similarity=0.236  Sum_probs=53.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +...+.+.+.+...++.+|||||||+|.++..+++.+.  +|++||+++.+++.++++....++
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~~~n   68 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDHDN   68 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTCCS
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhcccc
Confidence            44456677777777899999999999999999999987  999999999999999999876554

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.6e-07  Score=81.10  Aligned_cols=66  Identities=15%  Similarity=0.188  Sum_probs=56.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCCCcc
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEY  231 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~~~  231 (232)
                      ..+..+.+++...++.+|||+.||+|.|+..|++.+.  +|+|+|.++.+++.|+++++.++..+.+|
T Consensus       199 ~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~i~n~~~  264 (358)
T d1uwva2         199 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTF  264 (358)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhccccccee
Confidence            3455666777777788999999999999999999887  99999999999999999999888766543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.47  E-value=1.9e-07  Score=75.71  Aligned_cols=61  Identities=13%  Similarity=0.137  Sum_probs=52.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPK  229 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~~  229 (232)
                      ..+.+.+...++.+|||||||+|+.+..+++. +.  +|+++|.++.+++.|++++.+.+..+.
T Consensus        68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~--~V~~ie~~~~l~~~a~~~l~~~g~~nv  129 (215)
T d1jg1a_          68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKRNLERAGVKNV  129 (215)
T ss_dssp             HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCS--CEEEEESCHHHHHHHHHHHHHTTCCSE
T ss_pred             HHHHHhhccCccceEEEecCCCChhHHHHHHhhCc--eeEEEeccHHHHHHHHHHHHHcCCcee
Confidence            45666778888999999999999999999987 54  899999999999999999998876543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=1.9e-07  Score=77.79  Aligned_cols=50  Identities=20%  Similarity=0.152  Sum_probs=45.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++.+|||+|||+|.++..+++.+. ++|+++|+++.+++.++++++.++..
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~-~~V~avd~n~~a~~~~~~N~~~n~l~  156 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKVE  156 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTCT
T ss_pred             CccEEEECcceEcHHHHHHHHhCC-cEEEEecCCHHHHHHHHHHHHHhCCC
Confidence            489999999999999999998874 59999999999999999999987654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.44  E-value=1.3e-07  Score=80.89  Aligned_cols=51  Identities=24%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      .++++|||++||+|.++..++..+.  +|+++|+|+.+++.|+++++.++..+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~--~V~~vD~s~~al~~a~~n~~~ngl~~  194 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLNGLGN  194 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCC--cEEeecchHHHHHHHHHHHHHcCCCC
Confidence            3588999999999999999987766  99999999999999999999877543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.5e-07  Score=77.90  Aligned_cols=50  Identities=12%  Similarity=0.010  Sum_probs=44.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +..++||+|||+|.++..++...++++++|+|+|+.+++.|+++++.++.
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l  110 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL  110 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC
Confidence            45699999999999999999886566999999999999999999988764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=9.6e-08  Score=79.32  Aligned_cols=49  Identities=20%  Similarity=0.253  Sum_probs=39.9

Q ss_pred             CCCCCeEEEEcCCcChHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la-~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..++.++||||||+|.+....+ +.+.  +|+|+|+|+.|++.+++++.+..
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~--~v~~~D~S~~~i~~~~~~~~~~~  101 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEP  101 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCT
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCC--eEEEEeCCHHHHHHHHHHHhcCc
Confidence            3457899999999998765444 4444  89999999999999999987654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=9.3e-08  Score=81.53  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++++|||||||+|.++..+++.|+ .+|+|+|.|+. ...|++.+..++..
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~-~~~a~~~~~~n~~~   81 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSI-SDYAVKIVKANKLD   81 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTT-HHHHHHHHHHTTCT
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHH-HhhhhhHHHHhCCc
Confidence            588999999999999999999986 38999999975 56677776665543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.42  E-value=3.5e-07  Score=78.32  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||++||+|.++..++..|. .+|+++|+|+.+++.|++++..++.
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl  193 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGV  193 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             CCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCC
Confidence            488999999999999999999886 4899999999999999999998775

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.38  E-value=6e-07  Score=74.20  Aligned_cols=60  Identities=8%  Similarity=-0.048  Sum_probs=49.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       167 ~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..+.+.++....++|||||||+|.++..++++.++.+++++|+ +.+++.|++++.+.+..
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~  130 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA  130 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc
Confidence            3444455545568999999999999999999988789999998 78999999999876543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.31  E-value=4.6e-07  Score=77.21  Aligned_cols=50  Identities=16%  Similarity=-0.003  Sum_probs=45.4

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .++.+|||++||+|.++..++..|.  +|++||.|+.+++.|++++..++..
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln~~~  180 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLE  180 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCT
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhhccc
Confidence            3478999999999999999999887  9999999999999999999876654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.27  E-value=7.8e-07  Score=72.35  Aligned_cols=56  Identities=18%  Similarity=0.340  Sum_probs=44.5

Q ss_pred             HHHhhc--CCCCCCeEEEEcCCcChHHHHHHHh-C-----CCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          168 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKS-G-----LFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       168 ~l~~~l--~~~~~~~ILDiGCGtG~~~~~la~~-g-----~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+.+.|  ...++.+|||||||+|+++..+++. +     ...+|+++|+++++++.|++++..
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~  132 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT  132 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhh
Confidence            344444  4467899999999999999888876 2     123899999999999999998654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.23  E-value=1.8e-06  Score=67.91  Aligned_cols=59  Identities=20%  Similarity=0.241  Sum_probs=49.2

Q ss_pred             HHHHhhcCC-CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          167 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       167 ~~l~~~l~~-~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      +.+..+|.. ..+.+|||++||+|.++..++.+|+ .+|++||.++.+++.+++++...+.
T Consensus        30 ealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~   89 (182)
T d2fhpa1          30 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKE   89 (182)
T ss_dssp             HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            344444442 4689999999999999999999998 4899999999999999999986653

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=7.7e-07  Score=70.01  Aligned_cols=49  Identities=10%  Similarity=0.072  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .+.+|||++||+|.++..++.+|+ .+|+.||.+..+++.+++++...+.
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~   91 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKA   91 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccc
Confidence            478999999999999999999988 4999999999999999999987543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.21  E-value=1.4e-06  Score=74.39  Aligned_cols=50  Identities=12%  Similarity=0.092  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ++++|||+.||+|.++..++..|+ .+|++||+|+.+++.|++++..++..
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~  193 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLD  193 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCC
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhccc
Confidence            388999999999999999888776 48999999999999999999877754

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.17  E-value=3.6e-07  Score=58.88  Aligned_cols=46  Identities=20%  Similarity=0.171  Sum_probs=39.4

Q ss_pred             cccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      ++-+++|+||.|+++|...+         ..+.+.|..|+..|++.+|++.++.+
T Consensus         5 ~~LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~~~YPI~dgIPvLL~d   50 (59)
T d2jnya1           5 PQLLEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLID   50 (59)
T ss_dssp             GGGTCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSS
T ss_pred             HHHHHHhcCCCCCCEeEEeC---------CCCEEEcCccCccccccCCccccCHH
Confidence            35679999999999998654         34679999999999999999998865

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.15  E-value=3.7e-07  Score=58.73  Aligned_cols=45  Identities=24%  Similarity=0.333  Sum_probs=38.9

Q ss_pred             ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      +-+++|+||+|+++|....         ..+.+.|..|+..|++.+|++.++.+
T Consensus         2 kLL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~laYPI~dGIPvlL~~   46 (59)
T d2pk7a1           2 KLLDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLES   46 (59)
T ss_dssp             CGGGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGG
T ss_pred             chHhheECCCCCCcceEeC---------CCCEEecCCcCccccccCCccccCHH
Confidence            4578999999999998764         24579999999999999999999865

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=2.2e-06  Score=71.59  Aligned_cols=57  Identities=18%  Similarity=0.103  Sum_probs=46.5

Q ss_pred             HhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       170 ~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..........++||+|||+|..+..++.. ++++|+|+|+|+.+++.|++++++.+..
T Consensus       103 ~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~~~~  159 (271)
T d1nv8a_         103 LELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVS  159 (271)
T ss_dssp             HHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             hhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHcCCC
Confidence            33333334678999999999999988865 4579999999999999999999987654

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.08  E-value=5.3e-07  Score=58.06  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=38.8

Q ss_pred             ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccccCCCccccccc
Q 026825           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (232)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~g~~d~~~~  120 (232)
                      +-+++|+||+|+++|....         ..+.+.|..|+..|++.+|++.++.+
T Consensus         3 ~LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~l~YPI~dGIPvlL~~   47 (59)
T d2hf1a1           3 KFLEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLES   47 (59)
T ss_dssp             CCEEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGG
T ss_pred             hHhhhhcCCCCCCeeeEeC---------CCCEEecCCcCccccccCCccccCHH
Confidence            4568999999999998764         24679999999999999999999865

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.6e-06  Score=71.73  Aligned_cols=59  Identities=5%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ...+.+.+.+...++..|||||||+|.++..|++.+.  +|++||+++.+++..+++....
T Consensus         8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~   66 (252)
T d1qyra_           8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFLG   66 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTTG
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhhc
Confidence            3445666677777789999999999999999999987  9999999999999998866443

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.05  E-value=9.5e-08  Score=79.07  Aligned_cols=60  Identities=13%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       164 ~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ...+.+.+.+...++..|||||||+|.++..|++.+.  +|++||+++.|++.+++++...+
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~   75 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNT   75 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCS
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhcc
Confidence            3345677777777789999999999999999999987  99999999999999988876443

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.7e-05  Score=66.31  Aligned_cols=58  Identities=12%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       165 ~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      ....+.+.+...++..|||||+|.|.++..|.+.+.  +|++||+++.++...++++...
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~   66 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGT   66 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhh
Confidence            345566666666789999999999999999999987  9999999999999999988754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.86  E-value=9.7e-06  Score=65.15  Aligned_cols=51  Identities=4%  Similarity=-0.002  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      .++++|||+|||+|..+..+++. ..+++|+++|+++.+++.|++++...|.
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl  106 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL  106 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC
Confidence            34689999999999999999987 3456999999999999999999988764

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.80  E-value=5.4e-06  Score=65.73  Aligned_cols=59  Identities=20%  Similarity=0.394  Sum_probs=47.4

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHH
Q 026825          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCY  218 (232)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~  218 (232)
                      +.|....+.+.+.+...++.+|||.|||+|.|+..+.+. .....++|+|+++.++..++
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~   61 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP   61 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc
Confidence            456667778888888878999999999999999888765 43458999999998765543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.76  E-value=1.7e-05  Score=62.05  Aligned_cols=50  Identities=16%  Similarity=0.073  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      .+.++||+.||||.++.++..+|+ .+|+.||.+..+++..+++++..+..
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~   92 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCS   92 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred             ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhccc
Confidence            468999999999999999999998 59999999999999999999877643

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.9e-05  Score=60.69  Aligned_cols=52  Identities=12%  Similarity=-0.025  Sum_probs=45.7

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g-~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ...++|||||||+|.-+..+++.- .+++|+.+|+++...+.|++++.+.+..
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~  110 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE  110 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc
Confidence            447899999999999999999873 3579999999999999999999887654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.51  E-value=7.7e-05  Score=62.90  Aligned_cols=67  Identities=9%  Similarity=0.100  Sum_probs=49.5

Q ss_pred             CCCcHHHHHHHH----hhcCCCCCCeEEEEcCCcChHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          159 FPGPEKEFELMK----GYLKPVLGGNIIDASCGSGLFSRIFAKS-----GLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       159 ~~~~~~~~~~l~----~~l~~~~~~~ILDiGCGtG~~~~~la~~-----g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ++.|+.....+.    ..+...++.+|||.+||+|.++..+.+.     ....+++|+|+++.+++.|+.++...+
T Consensus        95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~  170 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR  170 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh
Confidence            566765544443    3345556789999999999999887654     223479999999999999998876544

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.47  E-value=0.00014  Score=56.80  Aligned_cols=51  Identities=22%  Similarity=0.226  Sum_probs=44.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .+...|.+.+++.++|..+|.|..+..+.+.+.  +|+|+|.++.+++.|++.
T Consensus         9 Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~--~viaiD~D~~ai~~a~~~   59 (182)
T d1wg8a2           9 EALDLLAVRPGGVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGL   59 (182)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHT
T ss_pred             HHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC--cEEEEhhhhhHHHHHhhc
Confidence            345567777899999999999999999998764  999999999999999875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.33  E-value=0.00019  Score=56.25  Aligned_cols=45  Identities=16%  Similarity=0.019  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCCcCh----HHHHHHHh----CCCCeEEEEeCCHHHHHHHHHH
Q 026825          176 VLGGNIIDASCGSGL----FSRIFAKS----GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~----~~~~la~~----g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .+.-+||++|||+|.    ++..+.+.    ++..+|+|.|+|+.+|+.|++-
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            345699999999996    33334443    2234799999999999999853

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.26  E-value=0.00031  Score=57.87  Aligned_cols=62  Identities=11%  Similarity=0.069  Sum_probs=53.0

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      |...++.+.+.... ++..|||.-||+|..+.+....|.  +.+|+|++++.++.|++|+.+...
T Consensus       236 P~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~~~~  297 (320)
T d1booa_         236 PAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDNNI  297 (320)
T ss_dssp             CTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             chHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHhccc
Confidence            45666667666544 689999999999999999999998  999999999999999999987543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.22  E-value=0.00056  Score=59.71  Aligned_cols=87  Identities=17%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             chhhHHHHHHHHHHHHh-----cCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCC-------------C
Q 026825          140 PFMSFIYERGWRQNFVW-----GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------F  201 (232)
Q Consensus       140 ~~~s~~ye~~wr~~f~~-----~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~-------------~  201 (232)
                      ..+...||...++....     +-|+.|......+.+.+.+.++.+|||-+||+|.|+..+.+...             .
T Consensus       120 d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~  199 (425)
T d2okca1         120 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  199 (425)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhh
Confidence            45677787776654322     23999999999999999887889999999999999988776521             1


Q ss_pred             CeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          202 SLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       202 ~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..++|+|+++.+...|+-++--.+.
T Consensus       200 ~~l~g~E~~~~~~~la~~n~~l~g~  224 (425)
T d2okca1         200 KALHGVDNTPLVVTLASMNLYLHGI  224 (425)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhccHHHHHHHHhhhhhcCC
Confidence            2599999999999999988765443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.15  E-value=0.00076  Score=53.77  Aligned_cols=60  Identities=18%  Similarity=0.177  Sum_probs=51.4

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .|....+.+.+.... ++..|||.-||+|..+.+..+.|.  +.+|+|++++-++.|++|+.+
T Consensus       197 kP~~L~~~lI~~~s~-~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~~  256 (256)
T d1g60a_         197 KPRDLIERIIRASSN-PNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQ  256 (256)
T ss_dssp             CCHHHHHHHHHHHCC-TTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHHhCC-CCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHcC
Confidence            345666667666653 589999999999999999999998  999999999999999999864

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.08  E-value=0.00037  Score=56.19  Aligned_cols=51  Identities=10%  Similarity=0.010  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..++|||||+++|.-+..+++. ..+++|+.+|.+++..+.|++++.+.|..
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~  110 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD  110 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc
Confidence            4689999999999999999977 34679999999999999999999987653

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0025  Score=50.40  Aligned_cols=52  Identities=15%  Similarity=0.058  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ++.++||+|+|.|.-+..++-..++.+++.+|.+..-+...++-....++.+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n  116 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN  116 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc
Confidence            4679999999999999999988888899999999999888888777766543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.72  E-value=0.002  Score=51.84  Aligned_cols=60  Identities=18%  Similarity=0.206  Sum_probs=50.9

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      |....+.+.+... .++..|||.-+|+|..+.+....|.  +.+|+|+++.-.+.|++|+...
T Consensus       193 P~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         193 PAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            4555666666554 3689999999999999999999998  9999999999999999999864

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.0033  Score=52.86  Aligned_cols=47  Identities=17%  Similarity=0.073  Sum_probs=40.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+..|||||.|.|.++..+.+.+...+|+++|+++..+...++++..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~   89 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG   89 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC
Confidence            46789999999999999998874334899999999999999988764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.55  E-value=0.0038  Score=53.69  Aligned_cols=50  Identities=20%  Similarity=0.058  Sum_probs=41.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ++.+|||..||+|..++..+......+|+..|+|+.+++.++++++.++.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~   94 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFD   94 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCc
Confidence            36899999999998888665543335999999999999999999987654

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.55  E-value=0.0027  Score=51.27  Aligned_cols=44  Identities=14%  Similarity=0.046  Sum_probs=35.5

Q ss_pred             HHHhhcC-CCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH
Q 026825          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (232)
Q Consensus       168 ~l~~~l~-~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~  211 (232)
                      .+.+..+ .....+|||||||+|.++..++++.+..+++..|+-+
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~  115 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ  115 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh
Confidence            3444444 2446899999999999999999998888999999843

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0025  Score=56.96  Aligned_cols=86  Identities=14%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             chhhHHHHHHHHHHHH-----hcCCCCcHHHHHHHHhhcCCCCCCeEEEEcCCcChHHHHHHHh----CC----------
Q 026825          140 PFMSFIYERGWRQNFV-----WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----GL----------  200 (232)
Q Consensus       140 ~~~s~~ye~~wr~~f~-----~~g~~~~~~~~~~l~~~l~~~~~~~ILDiGCGtG~~~~~la~~----g~----------  200 (232)
                      ..+...|+...++...     .+.||.|......|.+.+.+.++.+|+|-+||+|.|+..+.+.    ..          
T Consensus       122 D~lG~~YE~ll~~~~~~~~~~~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~  201 (524)
T d2ar0a1         122 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ  201 (524)
T ss_dssp             -----------------------CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhccccchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHH
Confidence            3455566655443211     1449999999999999998888889999999999999876554    11          


Q ss_pred             ----CCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          201 ----FSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       201 ----~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                          ...++|+|+++.+.+.|+-++--.+
T Consensus       202 ~~~~~~~~~G~E~~~~~~~la~~nl~l~~  230 (524)
T d2ar0a1         202 DFQIHRAFIGLELVPGTRRLALMNCLLHD  230 (524)
T ss_dssp             HHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred             HHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence                0158999999999999998876443

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.46  E-value=0.0024  Score=51.42  Aligned_cols=35  Identities=11%  Similarity=0.074  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~  211 (232)
                      ...+|||||||+|.++..++++.++.++++.|+.+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~  115 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH  115 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH
Confidence            35789999999999999999999888999999965

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.40  E-value=0.0029  Score=53.06  Aligned_cols=47  Identities=13%  Similarity=0.128  Sum_probs=42.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+++||.||.|.|..++.+.+.....+|+.||+++.+++.|++++..
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~  123 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE  123 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcc
Confidence            47899999999999999998876556999999999999999999853

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.005  Score=51.01  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             hcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      .+...++.+|||+++|.|.-+..++.. +..+.|+++|+++.-++..+++++..+..+
T Consensus        89 ~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~  146 (293)
T d2b9ea1          89 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC  146 (293)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             ccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc
Confidence            456677999999999999888888766 444699999999999999999999887544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.18  E-value=0.0063  Score=49.05  Aligned_cols=51  Identities=14%  Similarity=-0.018  Sum_probs=42.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ...+++|||+|.|.-+..++-..++.+++-+|-+..-+...+.-..+.+.-
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~  120 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE  120 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC
Confidence            467999999999999999988777779999999998888777766655543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.05  E-value=0.0047  Score=50.79  Aligned_cols=47  Identities=11%  Similarity=0.179  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..+++||.+|.|.|..+..+.+... .+|+.||+++.+++.|++.+..
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~  117 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDV-DEVIMVEIDEDVIMVSKDLIKI  117 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCC-SEEEEEESCHHHHHHHHHHTCT
T ss_pred             CCCceEEEecCCchHHHHHHHHhCC-ceEEEecCCHHHHHHHHHhhhh
Confidence            3478999999999999999887754 5899999999999999998754

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0056  Score=50.44  Aligned_cols=57  Identities=23%  Similarity=0.284  Sum_probs=50.2

Q ss_pred             hhcCCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccCCC
Q 026825          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF  227 (232)
Q Consensus       171 ~~l~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~~~  227 (232)
                      ..+...++.+|||+++|.|.=+..++..+.++.|+++|+++.-++..+++++..+..
T Consensus        96 ~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~  152 (284)
T d1sqga2          96 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK  152 (284)
T ss_dssp             HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC
T ss_pred             cccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc
Confidence            356677899999999999999999988877779999999999999999999887753

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.0059  Score=50.75  Aligned_cols=47  Identities=11%  Similarity=0.109  Sum_probs=42.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+++||-||.|.|..++.+.+.....+|+.||+++.+++.|++.+..
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~  135 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQ  135 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh
Confidence            47899999999999999999876556999999999999999998764

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.82  E-value=0.0055  Score=49.35  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCH
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~  211 (232)
                      ..+|||||||+|.++..++++.++.+++..|+.+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~  114 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ  114 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH
Confidence            5789999999999999999998888999999943

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.017  Score=44.25  Aligned_cols=36  Identities=19%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCH
Q 026825          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSE  211 (232)
Q Consensus       176 ~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~  211 (232)
                      .++.+|||+||+.|.++..+.+. +..+.|+|+|+.+
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            45889999999999999988876 5557999999865

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.38  E-value=0.024  Score=47.12  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=48.8

Q ss_pred             HHhhcCCCCCCeEEEEcCCcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhccCCCC
Q 026825          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~~~~~~  228 (232)
                      ....+...++.+|||+.+|.|.=+..++.. ...+.++++|+++.-++..++++++.+..+
T Consensus       108 ~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~  168 (313)
T d1ixka_         108 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN  168 (313)
T ss_dssp             HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS
T ss_pred             hhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc
Confidence            334566778999999999999877777766 334689999999999999999998877643

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.32  E-value=0.0081  Score=48.72  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=29.8

Q ss_pred             CCCCCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCC
Q 026825          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS  210 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S  210 (232)
                      -..+.++|+|+|||.|.++..++.+.....|.|+|+-
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            3356789999999999999999988644477888773

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.028  Score=46.20  Aligned_cols=47  Identities=17%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+++||-||-|.|..++.+.+.....+|+.||+++.+++.|++.+..
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~  124 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG  124 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchh
Confidence            47899999999999999999875446999999999999999999853

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.07  E-value=0.031  Score=46.00  Aligned_cols=47  Identities=11%  Similarity=0.126  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      ..++||-||-|.|..++.+.+.....+|+.||+++++++.|++.+..
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~  126 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD  126 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchh
Confidence            47899999999999999999886555999999999999999998753

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.99  E-value=0.023  Score=47.34  Aligned_cols=47  Identities=15%  Similarity=0.119  Sum_probs=42.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+++||-||-|.|..++.+.+.....+|+.||+++.+++.|++.+..
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~  152 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG  152 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchh
Confidence            47899999999999999999876545999999999999999999864

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=94.97  E-value=0.025  Score=46.20  Aligned_cols=47  Identities=13%  Similarity=0.152  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+++||-||-|.|..++.+.+.....+|+.||+++.+++.|++.+..
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~  121 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPS  121 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHH
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChh
Confidence            47899999999999999999875445999999999999999999853

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.74  E-value=0.037  Score=42.60  Aligned_cols=48  Identities=19%  Similarity=0.096  Sum_probs=38.6

Q ss_pred             cCCCCCCeEEEEcCCc-ChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCGt-G~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ....++.+||.+|||. |..+..+++.....+|+++|.++..++.|++.
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            4456699999999997 66777777663335999999999999999886

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.027  Score=42.03  Aligned_cols=46  Identities=13%  Similarity=0.111  Sum_probs=37.9

Q ss_pred             cCCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ....++.+||-+|+| .|.++..+++. |.  +|+++|.+++.++.|++.
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHH
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccc--cccccccchhHHHHhhcc
Confidence            345568999999998 67777777766 66  999999999999999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.29  E-value=0.057  Score=39.97  Aligned_cols=48  Identities=27%  Similarity=0.284  Sum_probs=38.5

Q ss_pred             cCCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          173 LKPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       173 l~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      ....++.+||-+||| .|.++..+++. |.  +|+++|.++.-++.|++.-.
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga   71 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA   71 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC
Confidence            345568899999998 66777777766 54  99999999999999988543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.12  E-value=0.064  Score=40.28  Aligned_cols=51  Identities=29%  Similarity=0.444  Sum_probs=39.5

Q ss_pred             HHhhcCCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          169 MKGYLKPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +.+..+..++.+||-+|+| .|.+...+++. |. .+|+++|.+++.++.|++.
T Consensus        20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEECCCccchhheeccccccc-ccccccccccccccccccc
Confidence            3344455678999999998 47777777777 43 3899999999999999765

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=94.03  E-value=0.041  Score=44.40  Aligned_cols=42  Identities=19%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             CCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       178 ~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      ..+|||.-+|.|..+..++..|.  +|+++|-++.+....++.+
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l  130 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGL  130 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHH
T ss_pred             CCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHH
Confidence            34899999999999999999998  9999999998765555444

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.92  E-value=0.017  Score=32.76  Aligned_cols=31  Identities=29%  Similarity=0.682  Sum_probs=24.2

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~  111 (232)
                      +=.||.|++...-.+          ...+.|+.|++.+...
T Consensus         3 lP~CP~C~seytYed----------g~l~vCPeC~hEW~~~   33 (38)
T d2akla2           3 LPPCPQCNSEYTYED----------GALLVCPECAHEWSPN   33 (38)
T ss_dssp             SCCCTTTCCCCCEEC----------SSSEEETTTTEEECTT
T ss_pred             CCcCCCCCCcceEcC----------CCEEECCcccCcCCcc
Confidence            347999999877553          3689999999988654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.48  E-value=0.074  Score=40.02  Aligned_cols=53  Identities=17%  Similarity=0.130  Sum_probs=39.7

Q ss_pred             HhhcCCCCCCeEEEEcCCcC-hHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhhc
Q 026825          170 KGYLKPVLGGNIIDASCGSG-LFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ  223 (232)
Q Consensus       170 ~~~l~~~~~~~ILDiGCGtG-~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~~~  223 (232)
                      .+....+++..||=+|||.. .++..+++. |. .+|+++|.+++-++.|++.-..
T Consensus        22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~   76 (176)
T d1d1ta2          22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGAT   76 (176)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCS
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCc
Confidence            33444567899999999854 555555555 43 4999999999999999988543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=93.36  E-value=0.048  Score=43.39  Aligned_cols=38  Identities=16%  Similarity=0.121  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHH----hCCCCeEEEEeCCHHHH
Q 026825          177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENML  214 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~----~g~~~~VvGvD~S~~ml  214 (232)
                      ++++|||+|++.|.-+..++.    .+.+++|+|+|+.+...
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~  121 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC  121 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhh
Confidence            468999999999976655543    35567999999986543

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.035  Score=34.61  Aligned_cols=34  Identities=12%  Similarity=0.244  Sum_probs=24.6

Q ss_pred             ccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      ..+..+.||.|+++-...+        ...+.+.|..||.+-
T Consensus         7 ~~~~~~~Cp~Cgs~~ii~D--------~~~Ge~vC~~CG~Vl   40 (58)
T d1dl6a_           7 DALPRVTCPNHPDAILVED--------YRAGDMICPECGLVV   40 (58)
T ss_dssp             CCCSCCSBTTBSSSCCEEC--------SSSCCEECTTTCCEE
T ss_pred             ccccccCCCCCCCCCEEEE--------CCCCcEecccCCCEe
Confidence            3457789999999644322        145789999999873

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=93.00  E-value=0.13  Score=43.87  Aligned_cols=52  Identities=12%  Similarity=0.078  Sum_probs=42.6

Q ss_pred             CCCCCeEEEEcCCcChHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHhhccCC
Q 026825          175 PVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESN  226 (232)
Q Consensus       175 ~~~~~~ILDiGCGtG~~~~~la~~--g~~~~VvGvD~S~~ml~~A~~~~~~~~~  226 (232)
                      ..++..++|||+-.|.++..++..  +...+|+++|+++...+..+++++..++
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            456789999999999988877654  3235999999999999999999886554

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.24  E-value=0.13  Score=38.53  Aligned_cols=50  Identities=20%  Similarity=0.147  Sum_probs=40.0

Q ss_pred             hhcCCCCCCeEEEEcCCc-ChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       171 ~~l~~~~~~~ILDiGCGt-G~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ......++.+||=+|||. |.++..+++...-..|+.+|.++.-++.|++.
T Consensus        22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            344456789999999997 88888888873324899999999999888885

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.01  E-value=0.11  Score=38.86  Aligned_cols=49  Identities=14%  Similarity=0.153  Sum_probs=37.5

Q ss_pred             hhcCCCCCCeEEEEcCCcC-hHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          171 GYLKPVLGGNIIDASCGSG-LFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       171 ~~l~~~~~~~ILDiGCGtG-~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +..+.+++.+||-+|||.. ..+..+++. |. .+|+++|.++.-++.|++.
T Consensus        21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHT
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHc
Confidence            3445567999999999854 555555555 54 4899999999999999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.99  E-value=0.21  Score=36.51  Aligned_cols=47  Identities=17%  Similarity=0.158  Sum_probs=36.6

Q ss_pred             cCCCCCCeEEEEcCC-cChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCG-tG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ....++.+||-+|+| .|..+..+++..- .+|+++|.++.-++.+++.
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhcc
Confidence            445668899999998 4566667776632 4999999999999998875

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.031  Score=33.77  Aligned_cols=41  Identities=20%  Similarity=0.480  Sum_probs=26.9

Q ss_pred             cCCcccCCCCCCC-cccccCCCccccccCCCceECCCCCccc
Q 026825           68 SKNVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        68 ~~~~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      ..+.+.||.|++. ......+..+.++.....+.|.+||+.+
T Consensus         6 ~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           6 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             ECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             ccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            4578999999984 2222223344444445578999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.81  E-value=0.21  Score=37.33  Aligned_cols=48  Identities=13%  Similarity=0.126  Sum_probs=38.3

Q ss_pred             cCCCCCCeEEEEcCCc-ChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCGt-G~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ....++.+||=+|||. |..+..+++..--.+|+++|.++.-++.|++.
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            4456688999999996 78888888873223799999999999999874

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.086  Score=34.18  Aligned_cols=42  Identities=12%  Similarity=0.311  Sum_probs=27.1

Q ss_pred             cccCCCCCCC-cccccCCCccccccCCCceECCCCCcccccCC
Q 026825           71 VLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (232)
Q Consensus        71 ~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~~  112 (232)
                      ...||.|++. ......+..+.+..+.-.+.|.+|++.|...+
T Consensus        23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~   65 (72)
T d1twfi2          23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ   65 (72)
T ss_dssp             CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred             CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCccccc
Confidence            3689999983 22222233344444555789999999887643

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.046  Score=35.18  Aligned_cols=28  Identities=25%  Similarity=0.549  Sum_probs=20.5

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      +.||.|+.+|.+.+           +..+|..|+..|..
T Consensus         3 ~~CP~C~~eL~~~~-----------~~~~C~~C~~~~~~   30 (71)
T d2jnea1           3 LHCPQCQHVLDQDN-----------GHARCRSCGEFIEM   30 (71)
T ss_dssp             CBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred             CcCCCccCcccccC-----------CCEehhhhhhhhee
Confidence            67999999998754           46677777666544

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.95  E-value=0.28  Score=36.19  Aligned_cols=50  Identities=18%  Similarity=0.173  Sum_probs=38.1

Q ss_pred             HHhhcCCCCCCeEEEEcC--CcChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          169 MKGYLKPVLGGNIIDASC--GSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGC--GtG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +.+.....++.+||-.|+  |.|..+..+++. |.  +|++++-+++-++.+++.
T Consensus        20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~~~~~~~~~~   72 (174)
T d1yb5a2          20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL--KILGTAGTEEGQKIVLQN   72 (174)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEeccccccccccccccccCc--cccccccccccccccccc
Confidence            334444567899999997  466777777776 55  999999999988888763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.35  E-value=0.39  Score=35.46  Aligned_cols=51  Identities=25%  Similarity=0.350  Sum_probs=38.2

Q ss_pred             HHhhcCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +....+..++.+||=+|||. |..+..+++. |. ..|+.+|.++.-++.|++.
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHc
Confidence            34455667799999999984 3556666655 55 4788999999999999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.45  Score=34.86  Aligned_cols=47  Identities=28%  Similarity=0.408  Sum_probs=36.4

Q ss_pred             cCCCCCCeEEEEcCCc-ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCGt-G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      .+..++.+||=+|+|. |.++..+++. |. .+|+++|.++.-++.|++.
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHh
Confidence            3455688999999985 4566666666 44 4899999999999999875

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=90.01  E-value=0.044  Score=34.00  Aligned_cols=39  Identities=18%  Similarity=0.492  Sum_probs=24.4

Q ss_pred             cccCCCCCCC-cccccCCCccccccCCCceECCCCCcccc
Q 026825           71 VLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        71 ~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      .+.||.|++. ......+....++.+.-.+.|.+|++.|.
T Consensus        15 ~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wr   54 (57)
T d1qypa_          15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR   54 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred             cCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCcce
Confidence            4789999994 22222223333444445789999998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.91  E-value=0.31  Score=35.83  Aligned_cols=52  Identities=15%  Similarity=0.088  Sum_probs=37.5

Q ss_pred             HHhhcCCCCCCeEEEEcCCcC-hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Q 026825          169 MKGYLKPVLGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG-~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +.+....+++.+||=+|+|.+ .....+++......|+++|.+++-++.|++.
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            334445567899999999985 4444444443235899999999999998875

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=89.38  E-value=0.34  Score=39.16  Aligned_cols=47  Identities=17%  Similarity=0.135  Sum_probs=40.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       177 ~~~~ILDiGCGtG~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      .+.+|||+-||.|.+...|.+.|.. .|.++|+++.+++.-+.+....
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~-~v~a~e~d~~a~~~~~~N~~~~   56 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAE-CVYSNEWDKYAQEVYEMNFGEK   56 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCE-EEEEECCCHHHHHHHHHHHSCC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCe-EEEEEeCCHHHHHHHHHHCCCC
Confidence            4679999999999999999999972 5667999999999999887643

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.87  E-value=0.067  Score=33.69  Aligned_cols=43  Identities=19%  Similarity=0.488  Sum_probs=28.3

Q ss_pred             ccccCCcccCCCCCCCcccccCCCccccccCCCceECCCCCcccc
Q 026825           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (232)
Q Consensus        65 ~~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~  109 (232)
                      .+.....+.||.|+......+.  ...-....+.++|..|+..-.
T Consensus         8 d~~~~~~y~Cp~C~~~ys~Lda--~~L~d~~~~~F~C~~C~~el~   50 (62)
T d1vd4a_           8 DSTNRASFKCPVCSSTFTDLEA--NQLFDPMTGTFRCTFCHTEVE   50 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHHH--HHHEETTTTEEBCSSSCCBCE
T ss_pred             ccccCCceECCCCCCCcchhhH--HHhcCcCCCeEEecCCCCEEe
Confidence            4566788999999995433221  112223557899999987743

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=88.47  E-value=0.62  Score=34.13  Aligned_cols=50  Identities=10%  Similarity=0.114  Sum_probs=38.9

Q ss_pred             HHhhcCCCCCCeEEEEcCC--cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          169 MKGYLKPVLGGNIIDASCG--SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCG--tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +.+.....++.+||=.|+|  .|.++..+++. |.  +|+++|.|++-++.+++.
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhc
Confidence            4444445678899999766  46778888777 66  999999999999998865

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.24  E-value=0.39  Score=35.17  Aligned_cols=51  Identities=22%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             HHhhcCCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          169 MKGYLKPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      +.+.....++.+||=+||| .|.++..+++. |. ..|+++|.++.-++.+++.
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHh
Confidence            3344555679999999998 23566666665 54 4899999999999988875

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.77  E-value=0.16  Score=30.42  Aligned_cols=30  Identities=17%  Similarity=0.419  Sum_probs=21.3

Q ss_pred             cccCCCCCCCcccccCCCccccccCCCceECCCCCccc
Q 026825           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (232)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y  108 (232)
                      ...||.|++.-...+        ...+.+.|..||.+.
T Consensus         5 ~~~Cp~Cgs~~iv~D--------~~~Ge~vC~~CG~Vi   34 (50)
T d1pfta_           5 QKVCPACESAELIYD--------PERGEIVCAKCGYVI   34 (50)
T ss_dssp             CCSCTTTSCCCEEEE--------TTTTEEEESSSCCBC
T ss_pred             cccCcCCCCCcEEEE--------CCCCeEecccCCcEe
Confidence            457999998543322        245789999999873

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.58  Score=36.89  Aligned_cols=48  Identities=13%  Similarity=0.122  Sum_probs=40.9

Q ss_pred             CCCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+++.+|=.|++.|   .++..|++.|.  +|+++|.+++.++.+.+.+.+.+
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~   58 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG   58 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            45789999999988   56677788888  99999999999999988887654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.52  E-value=0.69  Score=33.92  Aligned_cols=54  Identities=13%  Similarity=0.044  Sum_probs=38.9

Q ss_pred             HHhhcCCCCCCeEEEEcCCcC-hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhh
Q 026825          169 MKGYLKPVLGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (232)
Q Consensus       169 l~~~l~~~~~~~ILDiGCGtG-~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~  222 (232)
                      +.+....+++.+||=+|+|.+ .....+++.....+|+++|.+++-++.+++.-.
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga   74 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA   74 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC
Confidence            334455667899999999744 445555555333599999999999999988643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=85.26  E-value=0.85  Score=33.21  Aligned_cols=46  Identities=22%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             cCCCCCCeEEEEcCC-cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          173 LKPVLGGNIIDASCG-SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       173 l~~~~~~~ILDiGCG-tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ....++.+||=+|+| .|.++..+++. |.  +++++|.+++-++.+++.
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHH
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcccc--cchhhccchhHHHHHhcc
Confidence            445678999999997 46777777776 55  899999999988887654

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=84.82  E-value=0.24  Score=27.34  Aligned_cols=24  Identities=38%  Similarity=0.894  Sum_probs=17.7

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCCCCccccc
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      .||.|+..-...+              .|..||+.|..
T Consensus         4 ~CP~C~~~~a~GD--------------qCe~CG~~~~p   27 (35)
T d1pfva3           4 TCPKCKSPDQYGD--------------NCEVCGATYSP   27 (35)
T ss_dssp             ECTTTCCSSEETT--------------BCTTTCCBCCG
T ss_pred             ECCCCCCcccccc--------------cHHHcCCcCCH
Confidence            5999998654332              69999998743

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.58  E-value=0.99  Score=31.48  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=27.7

Q ss_pred             eEEEEcCCcChHHHH----HHHhCCCCeEEEEeCCHHHHHHHHHHh
Q 026825          180 NIIDASCGSGLFSRI----FAKSGLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       180 ~ILDiGCGtG~~~~~----la~~g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      +|+=+|+  |.++..    |.+.|.  .|+.+|.+++.++.+++.+
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~~   43 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAEI   43 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCC--CcceecCChhhhhhhhhhh
Confidence            5666666  555444    445576  9999999999998887664

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.92  E-value=1.4  Score=34.56  Aligned_cols=48  Identities=15%  Similarity=0.203  Sum_probs=39.4

Q ss_pred             CCCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      .+++.+|-.|.+.|   ..+..|++.|.  +|+.+|.+++-++.+.+.+...+
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~   54 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD   54 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC
Confidence            45889999998887   55667777788  99999999999998888876543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.69  E-value=1.5  Score=31.89  Aligned_cols=45  Identities=22%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             CCCCeEEEEcCCcC-hHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHh
Q 026825          176 VLGGNIIDASCGSG-LFSRIFAKS-GLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       176 ~~~~~ILDiGCGtG-~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      .++.+||-+|+|.. .++..+++. |. ..|+++|.+++-++.+++.-
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~g   77 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLG   77 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcc
Confidence            45889999999854 555566654 54 48999999999999988754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.69  E-value=1.2  Score=32.28  Aligned_cols=48  Identities=13%  Similarity=0.130  Sum_probs=36.2

Q ss_pred             hcCCCCCCeEEEEcCC--cChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          172 YLKPVLGGNIIDASCG--SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       172 ~l~~~~~~~ILDiGCG--tG~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ..+..++.+||=+|++  .|..+..+++. |. ..|+++|.++.-++.+++.
T Consensus        22 ~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          22 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHH
T ss_pred             HhCCCCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHc
Confidence            3455678999999973  55666655555 53 4999999999999999875

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=83.12  E-value=1.5  Score=36.35  Aligned_cols=52  Identities=8%  Similarity=-0.045  Sum_probs=38.1

Q ss_pred             cCCCCCCeEEEEcCCcChHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHhhcc
Q 026825          173 LKPVLGGNIIDASCGSGLFSRIFAKSG-------LFSLVVALDYSENMLKQCYEFVQQE  224 (232)
Q Consensus       173 l~~~~~~~ILDiGCGtG~~~~~la~~g-------~~~~VvGvD~S~~ml~~A~~~~~~~  224 (232)
                      +.....-.|||+|+|+|.++.-+.+..       ...+++-+|+|+.+.+.-++++...
T Consensus        75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~  133 (365)
T d1zkda1          75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI  133 (365)
T ss_dssp             TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC
T ss_pred             hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc
Confidence            443345689999999999887665431       1236899999999888888777654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.84  E-value=1.7  Score=33.87  Aligned_cols=48  Identities=23%  Similarity=0.220  Sum_probs=40.9

Q ss_pred             CCCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          176 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       176 ~~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      ..|+.+|=-|++.|   .++..|++.|.  +|+.+|.+++.++...+.+.+.+
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~   55 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG   55 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            35789999999988   67788888898  99999999999998888887543

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=82.46  E-value=0.3  Score=31.51  Aligned_cols=31  Identities=26%  Similarity=0.578  Sum_probs=22.8

Q ss_pred             CcccCCCCCCC-cccccCCCccccccCCCceECCCCCccccc
Q 026825           70 NVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (232)
Q Consensus        70 ~~l~CPiC~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~  110 (232)
                      ....||.|+.. +....          -+++.|..|+..+..
T Consensus        26 ~ky~Cp~Cgk~~vkR~a----------~GIW~C~kC~~~~AG   57 (73)
T d1jj2y_          26 KKHKCPVCGFKKLKRAG----------TGIWMCGHCGYKIAG   57 (73)
T ss_dssp             SCBCCSSSCCSCEEEEE----------TTEEEETTTCCEEEC
T ss_pred             CCccCCCCCCCceEEEE----------EEEEECCCCCCEEeC
Confidence            56789999974 33332          379999999988654

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.40  E-value=0.43  Score=26.59  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=21.8

Q ss_pred             ccCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (232)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~  111 (232)
                      ..|+.|++|-....    -  +..-..++|..||..-+..
T Consensus         2 V~C~~C~spDT~l~----k--e~R~~~l~C~aCGa~r~V~   35 (37)
T d1neea2           2 VICHECNRPDTRII----R--EGRISLLKCEACGAKAPLK   35 (37)
T ss_dssp             HHHTCCSSCSSCCE----E--ETTTTEEECSTTSCCCCSC
T ss_pred             eECCCCCCCCCEEE----E--cCCEEEEEeccCCCCcccc
Confidence            46999999743221    0  1123578999999886543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.84  E-value=1.7  Score=33.97  Aligned_cols=47  Identities=19%  Similarity=0.270  Sum_probs=39.8

Q ss_pred             CCCeEEEEcCCcC---hHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhhccC
Q 026825          177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES  225 (232)
Q Consensus       177 ~~~~ILDiGCGtG---~~~~~la~~g~~~~VvGvD~S~~ml~~A~~~~~~~~  225 (232)
                      +++++|=.|++.|   .++..|++.|.  +|+.+|.++.-++.+.+.+.+.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~   54 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG   54 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            5889999999877   56677788898  99999999999999888877654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.98  E-value=1  Score=27.13  Aligned_cols=46  Identities=17%  Similarity=0.284  Sum_probs=23.2

Q ss_pred             cCCcccCCCCCCCcccc----cCCCccccccCCCceECCCCCcccccCCC
Q 026825           68 SKNVLACPICYKPLTWI----GDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (232)
Q Consensus        68 ~~~~l~CPiC~~~l~~~----~~~~~~~~~~~~~~l~C~~C~~~y~~~~g  113 (232)
                      .+..|.||+|...+...    =.+..=..-+.+....|+.|+.......+
T Consensus         3 e~~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLGAD   52 (56)
T ss_dssp             SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSCCSS
T ss_pred             ccCCCCCcccCcccCCCEEecCCCHHhHHHHHcCCCcCcCCCCcccCCCC
Confidence            34678999998844211    00111122233344567777665544433

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=80.90  E-value=2.4  Score=31.03  Aligned_cols=52  Identities=15%  Similarity=0.052  Sum_probs=39.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCCc--ChHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHh
Q 026825          168 LMKGYLKPVLGGNIIDASCGS--GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFV  221 (232)
Q Consensus       168 ~l~~~l~~~~~~~ILDiGCGt--G~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~~  221 (232)
                      .+.+..+.+++.+||=.|.+.  |..+..+++. |.  +|++++-+++-++.+++.-
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga--~vi~~~~~~~~~~~~~~~G   74 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKIAYLKQIG   74 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC--EEEEeCCCHHHHHHHHhhh
Confidence            344455556789999888865  4777778777 55  9999999999888877763

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.76  E-value=2.5  Score=30.11  Aligned_cols=45  Identities=27%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCCcC-hHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHH
Q 026825          174 KPVLGGNIIDASCGSG-LFSRIFAKS-GLFSLVVALDYSENMLKQCYEF  220 (232)
Q Consensus       174 ~~~~~~~ILDiGCGtG-~~~~~la~~-g~~~~VvGvD~S~~ml~~A~~~  220 (232)
                      ...++.+||=+|+|.- .....+++. |.  +|+++|.++.-++.+++.
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhc
Confidence            4556899999999854 555555555 44  999999999999998774

>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Pyrococcus abyssi [TaxId: 29292]

Probab=80.58  E-value=0.36  Score=26.61  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=17.9

Q ss_pred             cCCCCCCCcccccCCCccccccCCCceECCCCCcccccC
Q 026825           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (232)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~y~~~  111 (232)
                      .||.|+..-...              =.|..||+.|...
T Consensus         4 ~CP~C~~~~a~G--------------DqCe~CG~~~~p~   28 (35)
T d1rqga3           4 TCPYCGAEDQKG--------------DQCEVCGRPLTPE   28 (35)
T ss_dssp             BCSSSCCSCCCT--------------TTCSSSCCCCCTT
T ss_pred             ECCCCCCCcccC--------------cchhhcCCccCHH
Confidence            699999854432              2699999987543