Citrus Sinensis ID: 026831

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MAFTQHGRNALRQITKESSDRVLHHPLLFSCQGLRYRRLEVILTTVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSCT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccccccEEccccccccEEEEEEEcccccccccccHHHHHcccccccEEEEEEEcccEEEccccccccEEEEEEEEEcccccHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHccccEEEEEccHHHHHHHccccccccEEEcccccccccccEEEEccEEEEccEEcccccccHHHHHHHHHHHHccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHcHHHHHHHHHHccccccccccHHHcccccEEEEccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccEEEccccccccccEEEEEEEEccHHHHHHHHHcccccEEEEcccccHHHHcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHccccccccEcccccHHHHccccccccccEEEEccEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAFTQHGRNALRQITKessdrvlhhpllfscqglryRRLEVILTtvapgyfrnhlmpkllavpnIEKFAHLIREQRrifqpeeeeeeEEEVRVIRKSEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKqkesnrpygaicaspalvlephgllkgkkatafpamcnklsdqseienrvvvdgnlitsrgpgtsMEFALAIVEKFFGRNKALELAKILLLSCT
Flexible Loop (DISEMBL)
maftqhgrnalrqitkessdrvlhHPLLfscqglryrRLEVILTTVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRrifqpeeeeeeeeevrvirksednmsREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLsdqseienrVVVDGNLitsrgpgtsMEFALAIVEKFFGRNKALELAKILLLSCT
Low Complexity Region (SEG)
MAFTQHGRNALRQITKESSDRVLHHPLLFSCQGLRYRRLEVILTTVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRIFQPeeeeeeeeeVRVIRKSEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSCT
Disordered region (IsUnstruct)
********************RVLHHPLLFSCQGLRYRRLEVILTTVAPGYFRNHLMPKLLAVPNIEKFAHLIRE***********************************************************************YGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS**
Disordered Region (DISOPRED)
********NA****T*******************RYRRLEVILTTVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSCT
Disordered Region (DISEMBL)
*********ALRQITKESSDRVLHHPLLFSCQGLRYRRLEVILTTVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRIFQ**************RKSEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSCT
Disordered Region (DISPRO)
*************ITKESSDRVLHHPLLFSCQGLRYRRLEVILTTVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSCT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFTQHGRNALRQITKESSDRVLHHPLLFSCQGLRYRRLEVILTTVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSCT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q9MAH3	438	Protein DJ-1 homolog B OS	yes	no	0.478	0.253	0.830	3e-50
Q9FPF0	392	Protein DJ-1 homolog A OS	no	no	0.474	0.280	0.714	2e-41
Q8VY09	472	Protein DJ-1 homolog C OS	no	no	0.474	0.233	0.419	6e-18
Q46948	196	Chaperone protein YajL OS	N/A	no	0.577	0.683	0.34	3e-17
Q5XJ36	189	Protein DJ-1 OS=Danio rer	yes	no	0.478	0.587	0.426	1e-13
Q8UW59	189	Protein DJ-1 OS=Gallus ga	yes	no	0.478	0.587	0.4	7e-13
P55880	196	Chaperone protein YajL OS	yes	no	0.487	0.576	0.4	3e-12
Q7TQ35	189	Protein DJ-1 OS=Mesocrice	N/A	no	0.478	0.587	0.417	8e-12
Q5E946	189	Protein DJ-1 OS=Bos tauru	yes	no	0.478	0.587	0.417	1e-11
Q99497	189	Protein DJ-1 OS=Homo sapi	yes	no	0.478	0.587	0.408	1e-11

>sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B OS=Arabidopsis thaliana GN=DJ1B PE=2 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 104/112 (92%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGA+AFA SEKLVNMLKKQ ESN+PYGAICASPALV EPHGLLKGKKATAFPAMC+K
Sbjct: 327 GGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCSK 386

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           L+DQS IE+RV+VDGNLITSRGPGTS+EFALAIVEKF+GR K L+L+K  L+
Sbjct: 387 LTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREKGLQLSKATLV 438

May be involved in oxidative stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FPF0|DJ1A_ARATH Protein DJ-1 homolog A OS=Arabidopsis thaliana GN=DJ1A PE=1 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 94/112 (83%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGL GAQ FA  EKLVNML+KQ E+N+PYG ICASPA V EP+GLLKGKKAT  P + +K
Sbjct: 281 GGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAYVFEPNGLLKGKKATTHPVVSDK 340

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           LSD+S IE+RVVVDGN+ITSR PGT+MEF+LAIVEKF+GR KAL+L K  L+
Sbjct: 341 LSDKSHIEHRVVVDGNVITSRAPGTAMEFSLAIVEKFYGREKALQLGKATLV 392

Involved in oxidative stress response. Confers protection against diverse stresses by binding both CSD1 and GPX2 and mediating the cytosolic activation of the Cu-Zn-dependent superoxide dismutase activity of CSD1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY09|DJ1C_ARATH Protein DJ-1 homolog C OS=Arabidopsis thaliana GN=DJ1C PE=2 SV=1

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 64/112 (57%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+ GA      E L  ++K+Q E  R YGAI  +PA+ L P GLL  K+ T  PA   K
Sbjct: 153 GGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTTGHPAFFGK 212

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           L     ++  + + G L TSRGPGTS +FAL++ E+ FG   A  + + LLL
Sbjct: 213 LPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLL 264

Plays an essential role in chloroplast development and is required for chloroplast integrity and viability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q46948|YAJL_ECOLI Chaperone protein YajL OS=Escherichia coli (strain K12) GN=yajL PE=1 SV=2

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 16/150 (10%)

Query: 97  SEDNMSREFEKAARRLENARL--------------GGLGGAQAFAKSEKLVNMLKKQKES 142
           S+ N++    +  + L +A L              GG+ GA+ F  S  LV  +K+   S
Sbjct: 39  SDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRS 98

Query: 143 NRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDG--NLITSRGP 200
            R   AICA+PA VL PH +      T FP + +K+  +  ++ RVV D    L+TS+GP
Sbjct: 99  GRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGP 158

Query: 201 GTSMEFALAIVEKFFGRNKALELAKILLLS 230
           GT+++F L I++   GR KA E+A  L+++
Sbjct: 159 GTAIDFGLKIIDLLVGREKAHEVASQLVMA 188

Involved in biogenesis of ribosomal proteins, probably as a ribosomal protein-folding chaperone. Interacts with ribosomal subunits, ribosomes and polysomes. Confers resistance to oxidative stress.

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q5XJ36|PARK7_DANRE Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGL GAQ  ++S  +  +LK Q+       AICA P  +L  HG+  G   T  P   +K
Sbjct: 74  GGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTALLA-HGIAYGSTVTTHPGAKDK 132

Query: 178 L--SDQSEI-ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           +   D  +  E RV  DGN+ITSRGPGTS EFAL IVE+  G   A ++   L+L
Sbjct: 133 MMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPLIL 187

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone (By similarity). Protects dopaminergic neurons against cell death arising from oxidative stress and proteasome inhibition, probably by a TP53/p53-dependent mechanism.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q8UW59|PARK7_CHICK Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  + ++LK Q+       AICA P  +L  HG+  G K    P   +K
Sbjct: 74  GGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPTALLA-HGIGFGSKVITHPLAKDK 132

Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + + +     E+RV  DGN++TSRGPGTS EF LAIVE   G+  A ++   L+L
Sbjct: 133 MMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVKAPLIL 187

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|P55880|YAJL_SALTY Chaperone protein YajL OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yajL PE=3 SV=2

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+ GA+ F  S  LV  +K+   S R   AICA+ A VL PH +      T FPA+ +K
Sbjct: 74  GGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIGNMTGFPALKDK 133

Query: 178 LSDQSEIENRVVVDG--NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
           +  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+A  L+++
Sbjct: 134 IPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGREKAHEVASQLVMA 188

Involved in biogenesis of ribosomal proteins, probably as a ribosomal protein-folding chaperone.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q7TQ35|PARK7_MESAU Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPTALLA-HEIGFGSKVTTHPGAKDK 132

Query: 178 L---SDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           +   S  S  E+RV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVKAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mesocricetus auratus (taxid: 10036)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5E946|PARK7_BOVIN Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q++      AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132

Query: 178 L---SDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           +   S  S  ENRV  DG ++TSRGPGTS EFAL IVE   G+  A ++   L+L
Sbjct: 133 MMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVEVLVGKEVADQVKAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99497|PARK7_HUMAN Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132

Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
255566579	364	conserved hypothetical protein [Ricinus	0.543	0.346	0.781	4e-53
224114830	442	predicted protein [Populus trichocarpa]	0.478	0.251	0.902	4e-53
302142910	393	unnamed protein product [Vitis vinifera]	0.482	0.284	0.876	2e-52
225461638	478	PREDICTED: uncharacterized protein LOC10	0.482	0.234	0.876	3e-52
147775474	427	hypothetical protein VITISV_008479 [Viti	0.461	0.250	0.898	1e-50
312282985	391	unnamed protein product [Thellungiella h	0.478	0.283	0.848	3e-49
297853104	437	DJ-1 family protein [Arabidopsis lyrata	0.478	0.254	0.839	9e-49
21536528	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.478	0.253	0.830	1e-48
18404397	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.478	0.253	0.830	2e-48
449438931	434	PREDICTED: uncharacterized protein LOC10	0.478	0.255	0.803	2e-48

>gi|255566579|ref|XP_002524274.1| conserved hypothetical protein [Ricinus communis] gi|223536465|gb|EEF38113.1| conserved hypothetical protein [Ricinus communis]

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 100/128 (78%), Positives = 114/128 (89%)

Query: 103 REFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGL 162
           +E        ++   GGLGGAQAFAKSEKLVNML+KQK++N+PYGAICASPALVLEPHGL
Sbjct: 235 KEINPMEWTFDDVPQGGLGGAQAFAKSEKLVNMLRKQKDTNKPYGAICASPALVLEPHGL 294

Query: 163 LKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALE 222
           LKGKKATAFPAMC+KLSD+SE ENRV+VDGNLITSRGPGTSMEFAL IVEKFFGR+KALE
Sbjct: 295 LKGKKATAFPAMCDKLSDRSEAENRVIVDGNLITSRGPGTSMEFALGIVEKFFGRHKALE 354

Query: 223 LAKILLLS 230
           LAK++L +
Sbjct: 355 LAKVMLFT 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114830|ref|XP_002316868.1| predicted protein [Populus trichocarpa] gi|222859933|gb|EEE97480.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/113 (90%), Positives = 108/113 (95%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGAQAFAKSEKLVNMLKKQ+ESNRPYGA+CASPALVLEPHGLLKGKKATAFPAMCNK
Sbjct: 328 GGLGGAQAFAKSEKLVNMLKKQRESNRPYGAMCASPALVLEPHGLLKGKKATAFPAMCNK 387

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
           LSD SEIENRVVVDGNLITSRGPGT+MEFAL IVEK FGR+KALELAK +L +
Sbjct: 388 LSDPSEIENRVVVDGNLITSRGPGTTMEFALGIVEKLFGRDKALELAKPMLFT 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142910|emb|CBI20205.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/113 (87%), Positives = 108/113 (95%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGAQAFA SEKLVN+LK Q+ESN+PYGAICASPALVLEPHGLLKGKKATAFPA+C+K
Sbjct: 279 GGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALVLEPHGLLKGKKATAFPALCSK 338

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
           LSDQSEIENRV+VDGNLITSRGPGTSMEFALAI+EKFFG  KALELAK++L S
Sbjct: 339 LSDQSEIENRVLVDGNLITSRGPGTSMEFALAIIEKFFGHGKALELAKVMLFS 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461638|ref|XP_002283063.1| PREDICTED: uncharacterized protein LOC100253735 [Vitis vinifera]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/113 (87%), Positives = 108/113 (95%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGAQAFA SEKLVN+LK Q+ESN+PYGAICASPALVLEPHGLLKGKKATAFPA+C+K
Sbjct: 364 GGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALVLEPHGLLKGKKATAFPALCSK 423

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
           LSDQSEIENRV+VDGNLITSRGPGTSMEFALAI+EKFFG  KALELAK++L S
Sbjct: 424 LSDQSEIENRVLVDGNLITSRGPGTSMEFALAIIEKFFGHGKALELAKVMLFS 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775474|emb|CAN62882.1| hypothetical protein VITISV_008479 [Vitis vinifera]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/108 (89%), Positives = 104/108 (96%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGAQAFA SEKLVN+LK Q+ESN+PYGAICASPALVLEPHGLLKGKKATAFPA+C+K
Sbjct: 289 GGLGGAQAFASSEKLVNLLKNQRESNKPYGAICASPALVLEPHGLLKGKKATAFPALCSK 348

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAK 225
           LSDQSEIENRV+VDGNLITSRGPGTSMEFALAI+EKFFG  KALELAK
Sbjct: 349 LSDQSEIENRVLVDGNLITSRGPGTSMEFALAIIEKFFGHGKALELAK 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282985|dbj|BAJ34358.1| unnamed protein product [Thellungiella halophila]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 105/112 (93%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGA+AFA SEKLV+MLK+Q ESN+PYGAICASPALV EPHGLLKGKKATAFPAMCNK
Sbjct: 280 GGLGGAEAFASSEKLVDMLKRQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCNK 339

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           LSDQS IE+RV+VDGNLITSRGPGTS+EFALAIVEKF+GR KAL+LAK  L+
Sbjct: 340 LSDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREKALQLAKATLV 391

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853104|ref|XP_002894433.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297340275|gb|EFH70692.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (505), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 104/112 (92%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGA+AFA SEKLVNMLKKQ ESN+PYGAICASPALV EPHGLLKGKKATAFPAMC+K
Sbjct: 326 GGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCSK 385

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           L+DQS IE+RV+VDGNLITSRGPGTS+EFALAIVEKF+GR K L+LAK  L+
Sbjct: 386 LTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREKGLQLAKATLV 437

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536528|gb|AAM60860.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative [Arabidopsis thaliana]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 104/112 (92%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGA+AFA SEKLVNMLKKQ ESN+PYGAICASPALV EPHGLLKGKKATAFPAMC+K
Sbjct: 327 GGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCSK 386

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           L+DQS IE+RV+VDGNLITSRGPGTS+EFALAIVEKF+GR K L+L+K  L+
Sbjct: 387 LTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREKGLQLSKATLV 438

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404397|ref|NP_564626.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana] gi|7769869|gb|AAF69547.1|AC008007_22 F12M16.18 [Arabidopsis thaliana] gi|15810459|gb|AAL07117.1| unknown protein [Arabidopsis thaliana] gi|20259561|gb|AAM14123.1| unknown protein [Arabidopsis thaliana] gi|332194795|gb|AEE32916.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 104/112 (92%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGA+AFA SEKLVNMLKKQ ESN+PYGAICASPALV EPHGLLKGKKATAFPAMC+K
Sbjct: 327 GGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCSK 386

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           L+DQS IE+RV+VDGNLITSRGPGTS+EFALAIVEKF+GR K L+L+K  L+
Sbjct: 387 LTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREKGLQLSKATLV 438

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438931|ref|XP_004137241.1| PREDICTED: uncharacterized protein LOC101212934 [Cucumis sativus] gi|449483151|ref|XP_004156507.1| PREDICTED: uncharacterized protein LOC101228984 [Cucumis sativus]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 106/112 (94%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGGA+AFAKSEKLVN+LKKQ+ESN+PYGAICASPALVLEPHGLLK KKATAFPA+C+K
Sbjct: 320 GGLGGAEAFAKSEKLVNLLKKQRESNKPYGAICASPALVLEPHGLLKDKKATAFPALCDK 379

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           LSD+SEI+NRV+VDGNLITSRGPGT+MEF+LAIVEK FGR+ A++L K ++ 
Sbjct: 380 LSDKSEIDNRVMVDGNLITSRGPGTTMEFSLAIVEKLFGRDTAVQLGKTMVF 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2009650	438	DJ1B "AT1G53280" [Arabidopsis	0.482	0.255	0.830	3.8e-46
TAIR|locus:2086295	392	DJ1A "AT3G14990" [Arabidopsis	0.482	0.285	0.714	1.3e-38
TAIR|locus:2168377	221	AT5G53070 [Arabidopsis thalian	0.409	0.429	0.540	2.2e-25
FB|FBgn0039802	205	dj-1beta "dj-1beta" [Drosophil	0.482	0.546	0.452	4.4e-20
TAIR|locus:2124246	472	DJ1C "DJ-1 homolog C" [Arabido	0.482	0.237	0.419	1.1e-17
GENEDB_PFALCIPARUM|PFF1335c	189	PFF1335c "4-methyl-5(B-hydroxy	0.474	0.582	0.419	1.6e-17
UNIPROTKB|Q46948	196	yajL "chaperone, protecting pr	0.487	0.576	0.4	3.2e-17
FB|FBgn0033885	217	DJ-1alpha "DJ-1alpha" [Drosoph	0.474	0.506	0.424	2.3e-16
WB|WBGene00015184	187	djr-1.1 [Caenorhabditis elegan	0.474	0.588	0.447	2.9e-16
ZFIN|ZDB-GENE-041010-5	189	park7 "parkinson disease (auto	0.478	0.587	0.426	2.6e-15

TAIR|locus:2009650 DJ1B "AT1G53280" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 93/112 (83%), Positives = 104/112 (92%)

Query:   118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
             GGLGGA+AFA SEKLVNMLKKQ ESN+PYGAICASPALV EPHGLLKGKKATAFPAMC+K
Sbjct:   327 GGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCSK 386

Query:   178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
             L+DQS IE+RV+VDGNLITSRGPGTS+EFALAIVEKF+GR K L+L+K  L+
Sbjct:   387 LTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREKGLQLSKATLV 438

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2086295 DJ1A "AT3G14990" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 80/112 (71%), Positives = 94/112 (83%)

Query:   118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
             GGL GAQ FA  EKLVNML+KQ E+N+PYG ICASPA V EP+GLLKGKKAT  P + +K
Sbjct:   281 GGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAYVFEPNGLLKGKKATTHPVVSDK 340

Query:   178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
             LSD+S IE+RVVVDGN+ITSR PGT+MEF+LAIVEKF+GR KAL+L K  L+
Sbjct:   341 LSDKSHIEHRVVVDGNVITSRAPGTAMEFSLAIVEKFYGREKALQLGKATLV 392

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2168377 AT5G53070 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 60/111 (54%), Positives = 79/111 (71%)

Query:    20 DRVLHHPLLFSCQGLRYRRLEVILTT-------------VAPGYFRNHLMPKLLAVPNIE 66
             +  +HHPLLF+CQG+RYR+LEVILTT             VAPGYFRNHLMPKLLAVPNI+
Sbjct:    25 ENAIHHPLLFACQGVRYRKLEVILTTGIEKLGKAGETVKVAPGYFRNHLMPKLLAVPNID 84

Query:    67 KFAHLIREQRRIFQPXXXXXXXXXVRVIRKSEDNMSREFEKAARRLENARL 117
             K+A+LIREQR+++           V+V+ K+ +  ++E+EKAA+RL NA L
Sbjct:    85 KYAYLIREQRKMYN---HEEVKEEVKVVHKTSEVQTKEYEKAAKRLANANL 132

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

FB|FBgn0039802 dj-1beta "dj-1beta" [Drosophila melanogaster (taxid:7227)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 52/115 (45%), Positives = 77/115 (66%)

Query:   118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
             GGLGG+ A  +S  + ++L+ Q+       AICA+P  VL  HG+  GK  T++P+M  +
Sbjct:    90 GGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQ 148

Query:   178 L-SDQSEIENRVVV-DGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
             L ++ S ++++ VV DGNLITSRGPGT+ EFAL I E+  G+ K  E+AK LL++
Sbjct:   149 LVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVA 203

GO:0006979 "response to oxidative stress" evidence=IDA;IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

TAIR|locus:2124246 DJ1C "DJ-1 homolog C" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 47/112 (41%), Positives = 64/112 (57%)

Query:   118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
             GG+ GA      E L  ++K+Q E  R YGAI  +PA+ L P GLL  K+ T  PA   K
Sbjct:   153 GGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTTGHPAFFGK 212

Query:   178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
             L     ++  + + G L TSRGPGTS +FAL++ E+ FG   A  + + LLL
Sbjct:   213 LPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLL 264

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GENEDB_PFALCIPARUM|PFF1335c PFF1335c "4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme" [Plasmodium falciparum (taxid:5833)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 47/112 (41%), Positives = 66/112 (58%)

Query:   118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
             GG+ G+   ++  + ++MLK+QK +NR Y AICA+P  VL+ H L+   +A A+P+    
Sbjct:    74 GGMKGSNTISECSEFIDMLKEQKANNRLYAAICAAPETVLDRHSLIDDVEAVAYPSFERN 133

Query:   178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
                  +   RV V  N ITS GPG+++EF L IVE   GR  AL LA   LL
Sbjct:   134 FKHIGK--GRVCVSKNCITSVGPGSAVEFGLKIVEHLLGRQVALSLASGFLL 183

GO:0009228 "thiamine biosynthetic process" evidence=ISS

UNIPROTKB|Q46948 yajL "chaperone, protecting proteins in response to oxidative stress" [Escherichia coli K-12 (taxid:83333)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 46/115 (40%), Positives = 69/115 (60%)

Query:   118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
             GG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +      T FP + +K
Sbjct:    74 GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDK 133

Query:   178 LSDQSEIENRVVVDGN--LITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
             +  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+A  L+++
Sbjct:   134 IPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMA 188

GO:0042254 "ribosome biogenesis" evidence=IEA;IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0042026 "protein refolding" evidence=IDA;IMP

FB|FBgn0033885 DJ-1alpha "DJ-1alpha" [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 48/113 (42%), Positives = 68/113 (60%)

Query:   118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
             GGL G +A   S  + ++L+ Q+       AICA+P   L  HG+ KGK  T+ P M  +
Sbjct:   101 GGLAGNKALMNSSAVGDVLRCQESKGGLIAAICAAPT-ALAKHGIGKGKSITSHPDMKPQ 159

Query:   178 LSD-QSEIENRVVV-DGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILL 228
             L +    I+++ VV DGN+ITSRGPGT+ +FAL I E+  G   A E+AK +L
Sbjct:   160 LKELYCYIDDKTVVQDGNIITSRGPGTTFDFALKITEQLVGAEVAKEVAKAML 212

GO:0006979 "response to oxidative stress" evidence=IDA;IMP

WB|WBGene00015184 djr-1.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 51/114 (44%), Positives = 69/114 (60%)

Query:   118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
             GG  G+   A+S  + ++LK Q ES    GAICA+P  +L  HG+ K +  T+ P++  K
Sbjct:    74 GGQPGSNTLAESLLVRDVLKSQVESGGLIGAICAAPIALLS-HGV-KAELVTSHPSVKEK 131

Query:   178 LSD--QSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
             L        E+RVVV G +ITSRGPGT+ EFAL IVE   G++KA  L   +LL
Sbjct:   132 LEKGGYKYSEDRVVVSGKIITSRGPGTAFEFALKIVELLEGKDKATSLIAPMLL 185

GO:0009636 "response to toxic substance" evidence=IMP

ZFIN|ZDB-GENE-041010-5 park7 "parkinson disease (autosomal recessive, early onset) 7" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 49/115 (42%), Positives = 64/115 (55%)

Query:   118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
             GGL GAQ  ++S  +  +LK Q+       AICA P  +L  HG+  G   T  P   +K
Sbjct:    74 GGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTALLA-HGIAYGSTVTTHPGAKDK 132

Query:   178 L--SDQSEI-ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
             +   D  +  E RV  DGN+ITSRGPGTS EFAL IVE+  G   A ++   L+L
Sbjct:   133 MMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPLIL 187

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAH3	DJ1B_ARATH	No assigned EC number	0.8303	0.4784	0.2534	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	3e-43
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	2e-37
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	8e-28
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	3e-27
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	2e-18
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	2e-11
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	2e-11
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	2e-11
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	9e-10
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	1e-09
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	6e-08
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	1e-06
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	4e-06
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	7e-06
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	5e-05
pfam01281	48	pfam01281, Ribosomal_L9_N, Ribosomal protein L9, N	2e-04
cd03141	221	cd03141, GATase1_Hsp31_like, Type 1 glutamine amid	0.001
PRK00137	147	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	0.004

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  143 bits (362), Expect = 3e-43
 Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 1/97 (1%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGL GAQ  A +EKL+ +LK+     +   AICA+PA++ +  GLLKGKKAT +P   +K
Sbjct: 68  GGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK-AGLLKGKKATCYPGFEDK 126

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKF 214
           L   + ++  VVVDGN+ITSRGPGT+ EFAL IVE  
Sbjct: 127 LGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  128 bits (324), Expect = 2e-37
 Identities = 54/110 (49%), Positives = 73/110 (66%), Gaps = 2/110 (1%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+ GA+    S+ L+N+LK Q+   +   AICA+PA++L    LL GKKAT +P    K
Sbjct: 71  GGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHGVLL-GKKATCYPGFKEK 129

Query: 178 LSDQSEIENR-VVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKI 226
           L + +   N+ VVVDGNLITSRGPGT++EFAL +VE   G+ KA E+A  
Sbjct: 130 LLNGNYSVNKTVVVDGNLITSRGPGTAIEFALELVELLAGKEKAQEVAAG 179

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score =  104 bits (261), Expect = 8e-28
 Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+ GA+ F  S  LV  +++   S R   AICA+PA VL PH L      T FP + +K
Sbjct: 74  GGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK 133

Query: 178 LSDQSEIENRVVVDG--NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           +  +   + RVV D   NL+TS+GPGT+++FAL I++   GR KA E+A  L++
Sbjct: 134 IPAEQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVM 187

Length = 196

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  101 bits (253), Expect = 3e-27
 Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 4/100 (4%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAM--C 175
           GG  GA+     EKLV  +K+  ES +P  AIC  P  VL   GLLKG++ T+FP++   
Sbjct: 43  GGHAGAEDLRDDEKLVKFVKEFYESGKPIAAICHGPV-VLAAAGLLKGRRVTSFPSVKEL 101

Query: 176 NKLSDQSEIENRVVVDGN-LITSRGPGTSMEFALAIVEKF 214
            K +    ++  VVVDGN L+TS GPG++ EFAL ++E  
Sbjct: 102 LKNAGAEYVDQPVVVDGNKLVTSAGPGSAEEFALELLEAL 141

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score = 79.5 bits (196), Expect = 2e-18
 Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 12/115 (10%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP----- 172
           GG  G +       L+  ++    + +P  AIC  PA++     LLKG+KATAFP     
Sbjct: 74  GGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEED 133

Query: 173 AMCNKLS------DQSEIENRVVVDGN-LITSRGPGTSMEFALAIVEKFFGRNKA 220
                        D     + VVVDGN L+T R P ++  FAL +++   G  KA
Sbjct: 134 VKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAEKA 188

Length = 188

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT---AFPAM 174
           GG G          L++ +++Q    +   ++C + AL+L   GLL G++AT   A    
Sbjct: 70  GGGGTRAL-VNDPALLDFIRRQAARAKYVTSVC-TGALLLAAAGLLDGRRATTHWAAIDW 127

Query: 175 CNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKIL 227
             +      ++ R VVDGN+ TS G    ++ ALA+V + FG   A  +A ++
Sbjct: 128 LKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALLI 180

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 15/92 (16%)

Query: 130 EKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIEN--- 186
              V  ++   E+ +P  AIC  P +++   G+++G+K T++P++      + ++ N   
Sbjct: 81  PDAVAFVRAFAEAGKPVAAICHGPWVLISA-GVVRGRKLTSYPSI------KDDLINAGA 133

Query: 187 -----RVVVDGNLITSRGPGTSMEFALAIVEK 213
                 VVVDGNLITSR P     F  AI++ 
Sbjct: 134 NWVDEEVVVDGNLITSRNPDDLPAFNRAILKA 165

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 18/124 (14%)

Query: 117 LGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT------- 169
           LGG       A +  L+  L++Q  +     A C +   +L   GLL G++AT       
Sbjct: 78  LGGDPDELLLADNPALIAWLRRQHANGATVAAAC-TGVFLLAEAGLLDGRRATTHWWLAP 136

Query: 170 ----AFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAK 225
                FP +  +L    + +  VV DGNLIT+ G     + AL ++E+  G   A  +A+
Sbjct: 137 QFRRRFPKV--RL----DPDRVVVTDGNLITAGGAMAWADLALHLIERLAGPELAQLVAR 190

Query: 226 ILLL 229
            LL+
Sbjct: 191 FLLI 194

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 130 EKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL----SDQSEIE 185
            K V ++++  E  +P  AIC  P L L   G+L+GKK T++PA+ + +    ++  +IE
Sbjct: 79  NKAVRLVREFVEKGKPVAAICHGPQL-LISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE 137

Query: 186 NRVVVDGNLITSRGPGTSMEFALAIVE 212
             VVVDGNL+TSR P     F    ++
Sbjct: 138 V-VVVDGNLVTSRVPDDLPAFNREFLK 163

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 19/123 (15%)

Query: 119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT--------- 169
           G  G +    +  L+  L++        G +C + A VL   GLL G++AT         
Sbjct: 84  GGLGPERPVNAPALLAWLRRAARRGARLGGLC-TGAFVLAEAGLLDGRRATTHWEHAEDF 142

Query: 170 --AFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKIL 227
              FP +          +   V+DG+ IT  G   +++  LA++ + FG   A  +A+ L
Sbjct: 143 QERFPDV-------RVTDRLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQL 195

Query: 228 LLS 230
           ++ 
Sbjct: 196 VVD 198

Length = 328

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 130 EKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCN--KLSDQSEIENR 187
           EK++ +++   E+N+P  AIC  P  +L   G+LKG++ TA+PA     +L+  + +++ 
Sbjct: 95  EKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDG 153

Query: 188 VVVDGNLITSRG 199
           VVVDGNL+T++ 
Sbjct: 154 VVVDGNLVTAQA 165

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 130 EKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT----AFPAMCNKLS--DQSE 183
             L  ++++  +  +P  AIC +    L   GLL  +K T     F           +  
Sbjct: 78  PDLAGLVRQALKQGKPVAAICGATLA-LARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYY 136

Query: 184 IENRVVVDGNLITSRGPGTS-MEFALAIVEKF 214
            E + V DGNLIT+   GT+ +EFA  I+   
Sbjct: 137 DEPQAVSDGNLITA--NGTAPVEFAAEILRAL 166

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 117 LGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT------- 169
           + G  G +A A    L+  L+    + +  GA+C S AL+L   GLL G+ AT       
Sbjct: 66  VPGGPGTRAAAADPALLAQLQLADPAGQLLGAVC-SGALLLAEAGLLDGRPATTHWTLKP 124

Query: 170 AFPAMCNKLSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVE 212
                  K+     I+   V DGNL T+ G   +++ AL ++ 
Sbjct: 125 WLREAGPKVL---LIDRPFVADGNLATAGGCLAAIDLALWLIA 164

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 136 LKKQKESNRPYGAICASPALVLEPHGLLKGKKAT-----------AFPAMCNKLSDQSEI 184
           L++        G I     L+    GLL G++AT           AFP            
Sbjct: 88  LRRAARRGVALGGIDTGAFLLAR-AGLLDGRRATVHWEHLEAFAEAFP-------RVQVT 139

Query: 185 ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
            +   +DG+ +T  G   +++  L ++ +  G   A  +A+  L 
Sbjct: 140 RDLFEIDGDRLTCAGGTAALDLMLELIARDHGAALAARVAEQFLH 184

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL 178
           G            L+  L++         ++C + A VL   GLL G++AT   A    L
Sbjct: 72  GGPDVDGRPPPPALLAALRRAAARGARVASVC-TGAFVLAEAGLLDGRRATTHWAYAEDL 130

Query: 179 SDQS-EI---ENRV-VVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +   +    + + V DGN+ TS G    ++  L +V +  G   A  +A+ L++
Sbjct: 131 ARRFPAVRVDPDVLYVDDGNVWTSAGVTAGIDLCLHLVREDLGAAVANRVARRLVV 186

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|201708 pfam01281, Ribosomal_L9_N, Ribosomal protein L9, N-terminal domain

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 17/48 (35%)

Query: 39 LEVILTT-------------VAPGYFRNHLMPKLLAVP----NIEKFA 69
          ++VIL               V PGY RN L+PK LAV     N+++  
Sbjct: 1  MKVILLEDVEGLGKKGDIVEVKPGYARNFLLPKGLAVYATPENLKELE 48

Length = 48

>gnl|CDD|153235 cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 33/125 (26%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPAL---VLEPHG--LLKGKKATAFP 172
           GG G       +  L ++L++  E+ +   A+C  PA    V    G  L+ GK  T F 
Sbjct: 98  GGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFT 157

Query: 173 AMCNKLSDQSEIENR-------------------------VVVDGNLITSRGPGTSMEFA 207
              N+  + + ++                           VVVDG LIT + P ++   A
Sbjct: 158 ---NEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVA 214

Query: 208 LAIVE 212
            A+V+
Sbjct: 215 EALVK 219

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers. Length = 221

>gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed

 Score = 36.2 bits (85), Expect = 0.004
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 26/70 (37%)

Query: 40 EVILT-------------TVAPGYFRNHLMPKLLAVP----NIEKFAHLIREQRRIFQPE 82
          +VIL               V  GY RN L+P+  AV     N+++      E RR     
Sbjct: 2  KVILLEDVKNLGKKGDVVEVKDGYARNFLIPQGKAVRATKGNLKQL-----EARR----A 52

Query: 83 EEEEEEEEVR 92
          E E +  E  
Sbjct: 53 ELEAKAAEEL 62

Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
COG4977	328	Transcriptional regulator containing an amidase do	100.0
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	100.0
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	100.0
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	100.0
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	100.0
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	100.0
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.97
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.97
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.97
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.97
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.96
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.96
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.95
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.95
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.92
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.87
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.87
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.85
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.83
PRK04155	287	chaperone protein HchA; Provisional	99.82
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.8
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.72
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.72
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.65
PRK11249	752	katE hydroperoxidase II; Provisional	99.34
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	98.82
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	98.51
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.4
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	98.36
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	97.9
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	97.9
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	97.67
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	97.56
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	97.56
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	97.51
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	97.46
COG3155	217	ElbB Uncharacterized protein involved in an early	97.38
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	97.11
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	97.08
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.07
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	96.94
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	96.83
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	96.81
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	96.8
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	96.73
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	96.7
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	96.67
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	96.6
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	96.57
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	96.55
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	96.13
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	95.83
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	95.82
PRK00784	488	cobyric acid synthase; Provisional	95.81
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	95.62
TIGR00313	475	cobQ cobyric acid synthase CobQ.	95.61
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	95.61
PRK08250	235	glutamine amidotransferase; Provisional	95.52
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	95.45
PRK07053	234	glutamine amidotransferase; Provisional	95.41
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	95.4
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	95.37
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	95.31
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	95.29
PHA03366	1304	FGAM-synthase; Provisional	95.21
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	95.18
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	95.09
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	94.86
PLN02617	538	imidazole glycerol phosphate synthase hisHF	94.79
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	94.6
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	94.3
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	94.28
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	94.24
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	94.24
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	94.16
PRK05665	240	amidotransferase; Provisional	94.15
PRK09065	237	glutamine amidotransferase; Provisional	94.11
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	94.07
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	93.92
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	93.8
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	93.79
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	93.61
PRK06490	239	glutamine amidotransferase; Provisional	93.44
PRK07765	214	para-aminobenzoate synthase component II; Provisio	93.22
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	93.02
PRK06895	190	putative anthranilate synthase component II; Provi	92.79
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	92.7
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	92.5
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	92.16
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	91.51
PRK00758	184	GMP synthase subunit A; Validated	91.5
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	91.03
PRK07567	242	glutamine amidotransferase; Provisional	91.0
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	90.93
PRK05670	189	anthranilate synthase component II; Provisional	90.77
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	90.67
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	90.63
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	90.3
PRK06186	229	hypothetical protein; Validated	89.7
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	89.45
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	89.15
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	88.84
COG2071	243	Predicted glutamine amidotransferases [General fun	88.73
PRK05380	533	pyrG CTP synthetase; Validated	87.35
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	86.23
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	85.98
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	84.41
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	84.31
PRK13566	720	anthranilate synthase; Provisional	84.24
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	84.06
CHL00101	190	trpG anthranilate synthase component 2	84.02
PRK08007	187	para-aminobenzoate synthase component II; Provisio	83.93
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	83.66
PRK08857	193	para-aminobenzoate synthase component II; Provisio	83.11
PLN02347	536	GMP synthetase	82.29
PRK05637	208	anthranilate synthase component II; Provisional	81.93
PLN02327	557	CTP synthase	81.67
PRK06774	191	para-aminobenzoate synthase component II; Provisio	81.13

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=100.00  E-value=3.9e-35  Score=258.89  Aligned_cols=180  Identities=20%  Similarity=0.302  Sum_probs=157.7

Q ss_pred             CCccEEEEEecCCccccccc----chhhhccCCCce---EEEEeccccccCCccccccccceEEeeccCCccchhHHHhh
Q 026831           37 RRLEVILTTVAPGYFRNHLM----PKLLAVPNIEKF---AHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA  109 (232)
Q Consensus        37 ~~~~~I~iLl~~gf~~~el~----p~~~a~~~~~~~---~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~  109 (232)
                      .++.+|+||++|+|.++.++    |+.+++...+..   +..++.++.   |+.++   +|+.+.      ++..+++.+
T Consensus         8 ~~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~---~V~ss---~G~~i~------~d~~~~~~~   75 (328)
T COG4977           8 PSPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG---PVRSS---SGLSIA------PDGGLEAAP   75 (328)
T ss_pred             CCceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC---CcccC---CCceEe------cCCcccccC
Confidence            55689999999999999997    666776554442   567887777   88876   599999      999999987


Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----ccCC
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SEIE  185 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~~d  185 (232)
                      +.|.++++||.. .....+.+++..|||+.+++|..+++||+| +|+||++||||||+||+||.+.+.|++.    ...+
T Consensus        76 ~~~~v~v~~g~~-~~~~~~~~~l~~~Lr~~~~~G~~l~gictG-af~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~  153 (328)
T COG4977          76 PIDILPVCGGLG-PERPVNAPALLAWLRRAARRGARLGGLCTG-AFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTD  153 (328)
T ss_pred             cceEEEEecCCC-cccccchHHHHHHHHHHHhcCCeEEEehHh-HHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCC
Confidence            888899989863 443344489999999999999999999999 5899999999999999999999999985    3678


Q ss_pred             CcEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          186 NRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       186 ~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      +.|++||++|||+|+++++||||+||++.+|+++|.+|+++|+++
T Consensus       154 ~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~  198 (328)
T COG4977         154 RLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVD  198 (328)
T ss_pred             ceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999999886

>TIGR01383 not_thiJ DJ-1 family protein

Probab=100.00  E-value=2.7e-33  Score=228.55  Aligned_cols=172  Identities=35%  Similarity=0.541  Sum_probs=147.0

Q ss_pred             EEEEEecCCccccccc-chhhhccCCCceE--EEEeccccccCCccccccccceEEeeccCCccchhHHHh--hhcccee
Q 026831           41 VILTTVAPGYFRNHLM-PKLLAVPNIEKFA--HLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA--ARRLENA  115 (232)
Q Consensus        41 ~I~iLl~~gf~~~el~-p~~~a~~~~~~~~--~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~--~~~d~li  115 (232)
                      ||+||++|||+++|++ |...+ ...+..+  .+++.+++  .++.++   .|+++.      ++..++++  ++.|.||
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l-~~a~~~~~~~~~s~~g~--~~v~~~---~g~~v~------~~~~~~~~~~~~~D~l~   68 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVL-RRAGIKVTVAIVGLNGK--LPVKGS---RGVKIL------ADASLEDVDLEEFDAIV   68 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHH-HHCCCEEEEEEeccCCC--cceEcC---CCCEEe------CCCCHHHCCcccCCEEE
Confidence            6899999999999999 88887 3334333  34777653  155554   599999      88889884  4578899


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCcc-CCCcEEEcCCE
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSE-IENRVVVDGNL  194 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~-~d~~~v~Dg~~  194 (232)
                      ||||.........++++.+|||++++++++|+++|+|+ ++||++|||+||++|+||...+.+++..+ .++.+++||++
T Consensus        69 v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i  147 (179)
T TIGR01383        69 LPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAP-AVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNI  147 (179)
T ss_pred             ECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhH-HHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCE
Confidence            99996334445678999999999999999999999995 88999999999999999999999988776 58999999999


Q ss_pred             EEcCChhhHHHHHHHHHHHhcCHHHHHHHHH
Q 026831          195 ITSRGPGTSMEFALAIVEKFFGRNKALELAK  225 (232)
Q Consensus       195 iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~  225 (232)
                      +||+|+.+++|+++++|++++|++.|++|++
T Consensus       148 ~T~~g~~a~~d~~l~li~~~~g~~~a~~va~  178 (179)
T TIGR01383       148 ITSRGPGTAIEFALALVELLCGKEKAQEVAA  178 (179)
T ss_pred             EECCChhhHHHHHHHHHHHhcCHHHHHHhhc
Confidence            9999999999999999999999999999985

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=5.8e-33  Score=227.20  Aligned_cols=174  Identities=24%  Similarity=0.366  Sum_probs=153.4

Q ss_pred             EEEEecCCccccccc-chhhhccCCC-----ceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhcccee
Q 026831           42 ILTTVAPGYFRNHLM-PKLLAVPNIE-----KFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENA  115 (232)
Q Consensus        42 I~iLl~~gf~~~el~-p~~~a~~~~~-----~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~li  115 (232)
                      |+||++|||++.+++ |.+++ ...+     ..+.+++.+++   ++.++   .|+.+.      ++..+++.++.|.|+
T Consensus         1 i~ill~~gf~~~~~~~~~d~~-~~a~~~~~~~~v~~vs~~~~---~v~~~---~g~~i~------~d~~~~~~~~~D~lv   67 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVF-GRAPRLAAPFEVFLVSETGG---PVSSR---SGLTVL------PDTSFADPPDLDVLL   67 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHH-HHhhccCCCEEEEEEECCCC---ceEeC---CCCEEc------CCcccccCCCCCEEE
Confidence            689999999999999 77777 3333     66888888876   77765   499999      888888776788899


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCc--c-CCCcEEEcC
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS--E-IENRVVVDG  192 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~--~-~d~~~v~Dg  192 (232)
                      ||||. +......++.+++||+++++++++|+++|+|+ ++|+++|+|+||++|+||...+.+++.+  + .++.+++||
T Consensus        68 ipgg~-~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~-~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg  145 (183)
T cd03139          68 VPGGG-GTRALVNDPALLDFIRRQAARAKYVTSVCTGA-LLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDG  145 (183)
T ss_pred             ECCCc-chhhhccCHHHHHHHHHhcccCCEEEEEchHH-HHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecC
Confidence            99996 35546789999999999999999999999995 7899999999999999999999998753  3 889999999


Q ss_pred             CEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          193 NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       193 ~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      +++||+|+.+++|+++++|++++|++.|+++++.|+++
T Consensus       146 ~i~T~~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~~~~  183 (183)
T cd03139         146 NIWTSGGVSAGIDMALALVARLFGEELAQAVALLIEYD  183 (183)
T ss_pred             CEEEcCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=4.4e-33  Score=230.55  Aligned_cols=176  Identities=22%  Similarity=0.252  Sum_probs=150.9

Q ss_pred             EEEEecCCccccccc-chhhhc---cC--------CCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh
Q 026831           42 ILTTVAPGYFRNHLM-PKLLAV---PN--------IEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA  109 (232)
Q Consensus        42 I~iLl~~gf~~~el~-p~~~a~---~~--------~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~  109 (232)
                      |+||+||||.+++++ |.+++.   ..        .+..+.+++.+++   ++.++   .|+++.      ++.++++.+
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~---~v~s~---~g~~i~------~d~~~~~~~   68 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG---PVLLA---GGILIL------PDATLADVP   68 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC---eeecC---CCceec------ccccccccC
Confidence            689999999999999 766552   11        2456788888876   77665   599999      888888777


Q ss_pred             hccceeccCChhhHH--hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCc----c
Q 026831          110 RRLENARLGGLGGAQ--AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS----E  183 (232)
Q Consensus       110 ~~d~livpGg~~~~~--~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~----~  183 (232)
                      +.|.||||||.....  .+..++.+++||+++++++++|++||+|+ ++|+++|+|+||++|+||...+.|++.+    +
T Consensus        69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~  147 (195)
T cd03138          69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGV-FLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRL  147 (195)
T ss_pred             CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHH-HHHHHccCcCCCeeeehHhhHHHHHHHCCCcee
Confidence            788899999864333  46689999999999999999999999996 7899999999999999999999988742    3


Q ss_pred             C-CCcEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          184 I-ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       184 ~-d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      . +..+++||+++||+|+.+++|+++++|++++|+++|++|++.|+++
T Consensus       148 ~~~~~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~  195 (195)
T cd03138         148 DPDRVVVTDGNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID  195 (195)
T ss_pred             ccCcEEEeCCCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            3 5899999999999999999999999999999999999999999864

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=6.8e-33  Score=227.88  Aligned_cols=175  Identities=20%  Similarity=0.261  Sum_probs=150.6

Q ss_pred             EEEEecCCccccccc-chhhhccC------CCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccce
Q 026831           42 ILTTVAPGYFRNHLM-PKLLAVPN------IEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLEN  114 (232)
Q Consensus        42 I~iLl~~gf~~~el~-p~~~a~~~------~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~l  114 (232)
                      |+||++|||++.|++ |.+++...      ....+.+++.+++   ++.++   .|+++.      ++..+++.++.|.|
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~---~v~~~---~g~~v~------~d~~~~~~~~~D~l   68 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG---PVRSS---SGLSLV------ADAGLDALAAADTV   68 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC---ceeec---CCcEEE------cCcCccccCCCCEE
Confidence            689999999999999 77776221      1256788888776   77665   499999      88888876678889


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----cc-CCCcEE
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SE-IENRVV  189 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~-~d~~~v  189 (232)
                      +||||.. ......++.+.+|||++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.    .+ .+..++
T Consensus        69 iipGg~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v  146 (187)
T cd03137          69 IVPGGPD-VDGRPPPPALLAALRRAAARGARVASVCTGA-FVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYV  146 (187)
T ss_pred             EECCCcc-cccccCCHHHHHHHHHHHhcCCEEEEECHHH-HHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEE
Confidence            9999963 4446789999999999999999999999995 789999999999999999999999874    23 346789


Q ss_pred             EcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          190 VDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       190 ~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      +||+++||+|+.+++|+++++|++++|++.|+++++.|+++
T Consensus       147 ~dg~i~Ta~g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~~  187 (187)
T cd03137         147 DDGNVWTSAGVTAGIDLCLHLVREDLGAAVANRVARRLVVP  187 (187)
T ss_pred             ecCCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999998764

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=6.8e-33  Score=227.78  Aligned_cols=174  Identities=20%  Similarity=0.233  Sum_probs=151.2

Q ss_pred             EEEEecCCccccccc-chhhhcc---C---CCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccce
Q 026831           42 ILTTVAPGYFRNHLM-PKLLAVP---N---IEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLEN  114 (232)
Q Consensus        42 I~iLl~~gf~~~el~-p~~~a~~---~---~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~l  114 (232)
                      |+|++||||.++|++ |.+++..   .   ....+.+++.+++   ++.++   .|+++.      ++..+++.++.|.|
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~---~v~~~---~g~~i~------~d~~~~~~~~~D~l   68 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA---PVTSS---NGLRVA------PDAALEDAPPLDYL   68 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC---eeecC---CCcEEe------CCccccccCCCCEE
Confidence            689999999999998 7776621   1   1245778888776   77665   499999      88888776678889


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----ccCCCcEEE
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SEIENRVVV  190 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~~d~~~v~  190 (232)
                      |||||.. .. ...++++++||+++++++++|+++|+|+ ++|+++|+|+||++|+||...+.|++.    .+.++.++.
T Consensus        69 iipgg~~-~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~-~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~  145 (185)
T cd03136          69 FVVGGLG-AR-RAVTPALLAWLRRAARRGVALGGIDTGA-FLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEI  145 (185)
T ss_pred             EEeCCCC-cc-ccCCHHHHHHHHHHHhcCCEEEEEcHHH-HHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEE
Confidence            9999963 33 6789999999999999999999999995 789999999999999999999999874    467889999


Q ss_pred             cCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          191 DGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       191 Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      ||+++||+|+.+++|+++++|++++|++.|+++++.|+++
T Consensus       146 dg~i~Ta~g~~~~~d~~l~ii~~~~g~~~a~~va~~~~~~  185 (185)
T cd03136         146 DGDRLTCAGGTAALDLMLELIARDHGAALAARVAEQFLHD  185 (185)
T ss_pred             cCCEEEeccHHHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999875

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.97  E-value=1.2e-30  Score=209.48  Aligned_cols=160  Identities=36%  Similarity=0.533  Sum_probs=138.9

Q ss_pred             EEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHh--hhccceeccC
Q 026831           42 ILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA--ARRLENARLG  118 (232)
Q Consensus        42 I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~--~~~d~livpG  118 (232)
                      |+||++|||.+.|+. |.+++ ...+..+.+++.+++   ++...  +.|+.+.      ++..+++.  ++.|.|||||
T Consensus         1 v~il~~~gf~~~e~~~~~~~~-~~a~~~v~~vs~~~~---~~~~~--~~g~~v~------~~~~~~~~~~~~~D~liipG   68 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVL-RRAGIEVTTASLEKK---LAVGS--SHGIKVK------ADKTLSDVNLDDYDAIVIPG   68 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHH-HHCCCEEEEEEcCCC---ceEec--cCCCEEE------ecCCHhHcCCCCCCEEEECC
Confidence            689999999999999 88888 455678889998877   55321  2599999      99899887  4578899999


Q ss_pred             ChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCccCCCcEEEcCCEEEcC
Q 026831          119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNLITSR  198 (232)
Q Consensus       119 g~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~~d~~~v~Dg~~iTa~  198 (232)
                      |........+++++++||+++++++++|+++|+|+ ++||++|||+||++|+||...+.+....+.++.+++|||++||+
T Consensus        69 g~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~  147 (163)
T cd03135          69 GLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAP-AVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSR  147 (163)
T ss_pred             CCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhH-HHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcC
Confidence            96235556689999999999999999999999995 78999999999999999999998877777788999999999999


Q ss_pred             ChhhHHHHHHHHHHHh
Q 026831          199 GPGTSMEFALAIVEKF  214 (232)
Q Consensus       199 g~~a~~d~~l~lI~~~  214 (232)
                      |+.+++|+++++|+++
T Consensus       148 g~~s~~d~al~li~~l  163 (163)
T cd03135         148 GPGTAFEFALKIVEAL  163 (163)
T ss_pred             CcccHHHHHHHHHHhC
Confidence            9999999999999974

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.97  E-value=9.4e-30  Score=211.16  Aligned_cols=183  Identities=30%  Similarity=0.390  Sum_probs=152.4

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hcccee
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENA  115 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~li  115 (232)
                      .+||.||++|||+++|+. |.+++ ...+..+..++....--.|+.++   .|+++.      ++..+++++  +.|.|+
T Consensus         2 ~~~~~il~~~g~~~~e~~~p~~~l-~~ag~~v~~~s~~~~~~~~v~ss---~G~~v~------~d~~l~~~~~~~~D~l~   71 (196)
T PRK11574          2 SASALVCLAPGSEETEAVTTIDLL-VRGGIKVTTASVASDGNLEITCS---RGVKLL------ADAPLVEVADGDFDVIV   71 (196)
T ss_pred             CceEEEEeCCCcchhhHhHHHHHH-HHCCCeEEEEEccCCCCceEEcC---CCCEEe------CCCCHHHCCCCCCCEEE
Confidence            468999999999999999 99999 44577777777543200145544   599999      888888863  467799


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCccCCCcEEEcC--C
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDG--N  193 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~~d~~~v~Dg--~  193 (232)
                      ||||..+...+..++.+.+|||+++++|++|++||+|+.++|+.+|+|+|+++|.+....+.+....+.++.++.|+  |
T Consensus        72 ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~  151 (196)
T PRK11574         72 LPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVN  151 (196)
T ss_pred             ECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCcc
Confidence            99996434546678899999999999999999999997545777999999999998888888877777777888886  9


Q ss_pred             EEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          194 LITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       194 ~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      ++||+|+.+++|+++++|++++|++.|++|++.|+++.
T Consensus       152 iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~~~~~  189 (196)
T PRK11574        152 LLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAA  189 (196)
T ss_pred             EEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhhccCc
Confidence            99999999999999999999999999999999998763

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.97  E-value=2.7e-30  Score=229.62  Aligned_cols=177  Identities=19%  Similarity=0.271  Sum_probs=151.1

Q ss_pred             ccEEEEEecCCccccccc-chhhhc---cCCC---ceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhc
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAV---PNIE---KFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARR  111 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~---~~~~---~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~  111 (232)
                      +++|+|++||||+++|++ |.+++.   ...+   ..+.+++.+++   |+.++   .|+.+.      ++..+++.++.
T Consensus         9 ~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~---~v~ss---~g~~i~------~d~~~~~~~~~   76 (322)
T PRK09393          9 NHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG---PLRAA---GGITVV------ADGGLELLDRA   76 (322)
T ss_pred             ccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC---ceEeC---CCcEEe------CCCCccccCCC
Confidence            368999999999999999 777662   1111   35678888776   77765   499999      99888887778


Q ss_pred             cceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----cc-CCC
Q 026831          112 LENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SE-IEN  186 (232)
Q Consensus       112 d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~-~d~  186 (232)
                      |.||||||.+ .. ...++++.+||+++.+++++|++||+|+ ++||++|||+|+++|+||...+.|++.    .+ .+.
T Consensus        77 D~livpGg~~-~~-~~~~~~l~~~l~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~  153 (322)
T PRK09393         77 DTIVIPGWRG-PD-APVPEPLLEALRAAHARGARLCSICSGV-FVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDV  153 (322)
T ss_pred             CEEEECCCCc-cc-ccCCHHHHHHHHHHHHcCCEEEEEcHHH-HHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCc
Confidence            8899999853 33 3468999999999999999999999995 789999999999999999999999863    22 345


Q ss_pred             cEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          187 RVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       187 ~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      .+++|||++||+|+.+++|+++++|++.+|.++++.+++.|+++
T Consensus       154 ~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~  197 (322)
T PRK09393        154 LYVDEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVP  197 (322)
T ss_pred             eEEecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcC
Confidence            78999999999999999999999999999999999999999874

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.97  E-value=2e-30  Score=209.57  Aligned_cols=154  Identities=27%  Similarity=0.368  Sum_probs=128.4

Q ss_pred             EecCCccccccc-chhhhccCC------CceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccceecc
Q 026831           45 TVAPGYFRNHLM-PKLLAVPNI------EKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARL  117 (232)
Q Consensus        45 Ll~~gf~~~el~-p~~~a~~~~------~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~livp  117 (232)
                      |+||||++++++ +.+++....      ...+++++.+++   |+.++   +|+++.      ++..+++.++.|.|+||
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~---~v~~s---~g~~i~------~~~~~~~~~~~D~lvvp   68 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG---PVTSS---SGLRIQ------PDGSLDDAPDFDILVVP   68 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC---EEEBT---TSEEEE------ESEETCCCSCCSEEEEE
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC---eeeec---CCeEEE------eccChhhcccCCEEEeC
Confidence            789999999999 777763221      356889999887   77775   599999      99999988788999999


Q ss_pred             CChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCc----c-CCCcEEEcC
Q 026831          118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS----E-IENRVVVDG  192 (232)
Q Consensus       118 Gg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~----~-~d~~~v~Dg  192 (232)
                      ||.. ......++.+++||+++++++++|+++|+| +++||++|||+|+++|+||...+.|++.+    + .++.+|.||
T Consensus        69 g~~~-~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg  146 (166)
T PF13278_consen   69 GGPG-FDAAAKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDG  146 (166)
T ss_dssp             -STT-HHHHTT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEET
T ss_pred             CCCC-chhcccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECC
Confidence            9974 455678899999999999999999999999 58899999999999999999999999863    2 389999999


Q ss_pred             CEEEcCChhhHHHHHHHHHH
Q 026831          193 NLITSRGPGTSMEFALAIVE  212 (232)
Q Consensus       193 ~~iTa~g~~a~~d~~l~lI~  212 (232)
                      |++||+|+.+++|++++||+
T Consensus       147 ~i~Ta~g~~~~~dl~l~li~  166 (166)
T PF13278_consen  147 NIITAGGPTAAIDLALYLIE  166 (166)
T ss_dssp             TEEEESSCCHHHHHHHHHHH
T ss_pred             CeEEecHHHHHHHHHHHHhC
Confidence            99999999999999999996

...

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.96  E-value=2.2e-28  Score=197.38  Aligned_cols=159  Identities=22%  Similarity=0.356  Sum_probs=137.6

Q ss_pred             EEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hccceecc
Q 026831           41 VILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENARL  117 (232)
Q Consensus        41 ~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~livp  117 (232)
                      +|+||++|||...|+. |..++ ...+..+++++.+++   ++.++   .|+.+.      ++..+++++  +.|.|+||
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~~~---~v~~~---~g~~i~------~~~~~~~~~~~~~D~vvv~   67 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRL-REAGHEVDTVSKEAG---TTVGK---HGYSVT------VDATIDEVNPEEYDALVIP   67 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHH-HHCCCEEEEEecCCC---ceecc---CCceee------ccCChhhCCHHHCcEEEEC
Confidence            6899999999999999 88888 455778888887766   66654   499999      888888764  46789999


Q ss_pred             CChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCC-CcEEEcCCE
Q 026831          118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIE-NRVVVDGNL  194 (232)
Q Consensus       118 Gg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d-~~~v~Dg~~  194 (232)
                      ||.. ...+..++.+.+||+++++++++++++|+|+ ++||++|||+||++|+||...+.+++.  .+.+ +.+|.|||+
T Consensus        68 Gg~~-~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~i  145 (166)
T TIGR01382        68 GGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGP-QLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNL  145 (166)
T ss_pred             CCCC-HHHhccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCE
Confidence            9963 5545678999999999999999999999995 789999999999999999999999874  4566 799999999


Q ss_pred             EEcCChhhHHHHHHHHHHHh
Q 026831          195 ITSRGPGTSMEFALAIVEKF  214 (232)
Q Consensus       195 iTa~g~~a~~d~~l~lI~~~  214 (232)
                      |||+|+.++.+++.++++++
T Consensus       146 iT~~~~~~~~~fa~~~~~~l  165 (166)
T TIGR01382       146 VTSRVPDDLPAFNREFLKLL  165 (166)
T ss_pred             EEeCCcccHHHHHHHHHHHh
Confidence            99999999999999999975

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.96  E-value=2.5e-28  Score=196.89  Aligned_cols=157  Identities=24%  Similarity=0.358  Sum_probs=136.6

Q ss_pred             EEEEEecCCccccccc-chhhhccCCCceEEEEecc-ccccCCccccccccce-EEeeccCCccchhHHHhh--hcccee
Q 026831           41 VILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQ-RRIFQPEEEEEEEEEV-RVIRKSEDNMSREFEKAA--RRLENA  115 (232)
Q Consensus        41 ~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~-~~~~~pv~s~~~~~Gl-~v~~~~~~~~~~~~~~~~--~~d~li  115 (232)
                      ||+||++|||++.|+. +...+ ...+.++.+++.+ .+   ++.++   .|+ .+.      ++..+++.+  +.|.|+
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l-~~a~~~v~~vs~~~~~---~v~~~---~g~~~i~------~d~~~~~~~~~~~D~lv   67 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRL-REAGAEVVVAGPEAGG---EIQGK---HGYDTVT------VDLTIADVDADDYDALV   67 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHH-HHCCCEEEEEccCCCc---ccccC---cCceeec------CCCChHHCCHHHCCEEE
Confidence            6899999999999999 77776 5557888999988 55   77665   488 888      888888763  468899


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcEEEcCC
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRVVVDGN  193 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~v~Dg~  193 (232)
                      ||||. +...+..++.+++||+++++++++|+++|+|+ ++||++|+|+|+++|+||...+.+++.  .+.++.+++|||
T Consensus        68 vpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~  145 (165)
T cd03134          68 IPGGT-NPDKLRRDPDAVAFVRAFAEAGKPVAAICHGP-WVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGN  145 (165)
T ss_pred             ECCCC-ChhhhccCHHHHHHHHHHHHcCCeEEEEchHH-HHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECC
Confidence            99997 45556678999999999999999999999995 789999999999999999999999873  466888999999


Q ss_pred             EEEcCChhhHHHHHHHHHH
Q 026831          194 LITSRGPGTSMEFALAIVE  212 (232)
Q Consensus       194 ~iTa~g~~a~~d~~l~lI~  212 (232)
                      +|||+|+.++++|+..+|+
T Consensus       146 iiT~~~~~~~~~f~~~~~~  164 (165)
T cd03134         146 LITSRNPDDLPAFNRAILK  164 (165)
T ss_pred             EEEecCcchHHHHHHHHHh
Confidence            9999999999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.95  E-value=1e-27  Score=194.88  Aligned_cols=157  Identities=20%  Similarity=0.236  Sum_probs=131.6

Q ss_pred             EEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHh--hhccceeccC
Q 026831           42 ILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA--ARRLENARLG  118 (232)
Q Consensus        42 I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~--~~~d~livpG  118 (232)
                      |+++++|||++.|++ |..++....+..+.+++.+++   ++.++   +|+.+.      ++..+++.  .+.|.|+|||
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~---~v~ss---~g~~i~------~~~~~~~~~~~~~D~l~I~G   68 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE---PVTSI---GGLRVV------PDYSLDDLPPEDYDLLILPG   68 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC---eeEec---CCeEEc------cccchhHCCHhHccEEEEcC
Confidence            689999999999999 888884433566788888876   77665   599999      99888886  4578899999


Q ss_pred             ChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCcc-chhhhcc-----CccCCCcEEEcC
Q 026831          119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPA-MCNKLSD-----QSEIENRVVVDG  192 (232)
Q Consensus       119 g~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~-~~~~~~~-----~~~~d~~~v~Dg  192 (232)
                      |.. .. ...++++.+|||++++++++|+++|+|+ ++||++|||+||++|+||. ..+.+++     ..+.++.+++||
T Consensus        69 g~~-~~-~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg  145 (170)
T cd03140          69 GDS-WD-NPEAPDLAGLVRQALKQGKPVAAICGAT-LALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDG  145 (170)
T ss_pred             Ccc-cc-cCCcHHHHHHHHHHHHcCCEEEEEChHH-HHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcC
Confidence            963 33 3478999999999999999999999996 7899999999999999986 4566654     246789999999


Q ss_pred             CEEEcCChhhHHHHHHHHHHHh
Q 026831          193 NLITSRGPGTSMEFALAIVEKF  214 (232)
Q Consensus       193 ~~iTa~g~~a~~d~~l~lI~~~  214 (232)
                      |+|||+|. +++|+++++|+++
T Consensus       146 ~iiT~~g~-a~~d~al~~i~~l  166 (170)
T cd03140         146 NLITANGT-APVEFAAEILRAL  166 (170)
T ss_pred             CEEECCCc-CHHHHHHHHHHHc
Confidence            99999875 5899999999976

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.95  E-value=4.9e-27  Score=192.48  Aligned_cols=165  Identities=22%  Similarity=0.334  Sum_probs=136.1

Q ss_pred             EEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCcccc----------ccccceEEeeccCCccchhHHHhh
Q 026831           41 VILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEE----------EEEEEVRVIRKSEDNMSREFEKAA  109 (232)
Q Consensus        41 ~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~----------~~~~Gl~v~~~~~~~~~~~~~~~~  109 (232)
                      ||+|+++|||...|+. |..++ ...+..+.+++.+++...++.+.          ....|+.+.      ++..+++.+
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l-~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~------~~~~~~~~~   73 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQAL-QEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFA------VTADFDEVD   73 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHH-HHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEe------ccCCcccCC
Confidence            6899999999999999 99988 55688888998877522222221          012478888      888888754


Q ss_pred             --hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCC
Q 026831          110 --RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIE  185 (232)
Q Consensus       110 --~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d  185 (232)
                        ..|.|+||||. +......++.+.+||+++++++++|++||+|+ ++|+++|||+||++|+||...+.+++.  .+.+
T Consensus        74 ~~~~D~liv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~  151 (180)
T cd03169          74 PDDYDALVIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVD  151 (180)
T ss_pred             HhHCCEEEEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecccchHHHHHHCCCEEee
Confidence              45789999996 34445568999999999999999999999995 789999999999999999999988874  3567


Q ss_pred             CcEEEcCCEEEcCChhhHHHHHHHHHHHh
Q 026831          186 NRVVVDGNLITSRGPGTSMEFALAIVEKF  214 (232)
Q Consensus       186 ~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~  214 (232)
                      +.++.|||+|||+|+.+..+|+.++++.+
T Consensus       152 ~~~v~D~~iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         152 DGVVVDGNLVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             ccEEEECCEEEecCCchHHHHHHHHHHhC
Confidence            88999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.92  E-value=1.4e-24  Score=180.25  Aligned_cols=181  Identities=35%  Similarity=0.483  Sum_probs=156.7

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHh-h-hcccee
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA-A-RRLENA  115 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~-~-~~d~li  115 (232)
                      ...+.+|.-+|.+++|+. |.+++ +..|..++.++..++  .+++.++   |..+.      ++..+.+. . ..|+++
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVL-rr~Gi~Vt~ag~~~~--~~vkcs~---~v~~~------~d~~l~D~~~~~yDvii   72 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVL-RRGGIDVTVAGPNKK--EGVKCSR---GVHIL------PDNALFDVVDSKYDVII   72 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHH-HhcCceEEEecCCCC--ccccccc---ceEec------ccccchhhccccccEEE
Confidence            456777778899999999 98888 677888899997766  3888775   88887      77655543 2 467799


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhcc--CccCCCcEEEcCC
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSD--QSEIENRVVVDGN  193 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~--~~~~d~~~v~Dg~  193 (232)
                      ||||.++...+.+++.+.+.+++|.+.|+.|++||+|+.++|+.-|++.|+++|+|+...+.+.+  ..|.+.+++.|||
T Consensus        73 lPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~  152 (247)
T KOG2764|consen   73 LPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGN  152 (247)
T ss_pred             ecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCc
Confidence            99997677888999999999999999999999999998677778888889999999999999998  4578999999999


Q ss_pred             EEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          194 LITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       194 ~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      ++||.|+...+++++.|+|++.|++.+.++.+.+++.+
T Consensus       153 liTSrGpgT~~eFal~lvEqL~GKeka~~v~~~l~l~~  190 (247)
T KOG2764|consen  153 LITSRGPGTAFEFALKLVEQLGGKEKANEVKKPLSLLF  190 (247)
T ss_pred             EEeccCCCchHHHHHHHHHHhcCchhhhhhhccceeec
Confidence            99999999999999999999999999999999887654

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.87  E-value=9.2e-22  Score=162.07  Aligned_cols=169  Identities=26%  Similarity=0.412  Sum_probs=136.8

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hcccee
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENA  115 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~li  115 (232)
                      .++|+++++|||+..|+. |..++ ...+..+..++...+. .+..+.  ..+..+.      ++..+++++  +.|.|+
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l-~~ag~~v~~~~~~~~~-~~~~~~--~g~~~~~------~~~~~~~~~~~~ydal~   71 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVL-RRAGFEVDVASPEGKG-KSVTSK--RGGLVVA------DDKAFDDADAADYDALV   71 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHH-HHCCCeEEEEecCCCc-ceeecc--cCcceEe------cccccccCCHhHCCEEE
Confidence            468999999999999999 99999 6667777777766531 122222  1245555      556676664  677899


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC-CCCCCeeecCccchhhhcc------CccCCC--
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLKGKKATAFPAMCNKLSD------QSEIEN--  186 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG-LL~g~~~T~h~~~~~~~~~------~~~~d~--  186 (232)
                      +|||..+......++.+++|+|++++++++|++||+|+ .+|+.+| +++||++|+++...+...+      ..+.|.  
T Consensus        72 ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~-~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~  150 (188)
T COG0693          72 IPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGP-AVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPL  150 (188)
T ss_pred             ECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhH-HHHhccccccCCceEeecCchHHHHHhHHHhcCceEecccc
Confidence            99993245556667999999999999999999999997 6799999 9999999999998888777      356666  


Q ss_pred             ---cEEEcCC-EEEcCChhhHHHHHHHHHHHhcCHH
Q 026831          187 ---RVVVDGN-LITSRGPGTSMEFALAIVEKFFGRN  218 (232)
Q Consensus       187 ---~~v~Dg~-~iTa~g~~a~~d~~l~lI~~~~G~~  218 (232)
                         .++.||+ ++|+.++.+..+++..+++++.+..
T Consensus       151 ~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         151 WTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             CcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence               9999999 9999999999999999999998754

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.87  E-value=2.5e-22  Score=170.08  Aligned_cols=160  Identities=20%  Similarity=0.271  Sum_probs=122.6

Q ss_pred             cCCccccccc-chhhhccCCCceEEEEeccccccCCccccc--------------cccceEEeeccCCccchhHHHhh--
Q 026831           47 APGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEE--------------EEEEVRVIRKSEDNMSREFEKAA--  109 (232)
Q Consensus        47 ~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~--------------~~~Gl~v~~~~~~~~~~~~~~~~--  109 (232)
                      -+||+..|+. |..++ ...|..+.+++.++........+.              ...+..+.      ++..+++++  
T Consensus        17 ~~G~~~~E~~~p~~~l-~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~   89 (221)
T cd03141          17 PTGLWLEELAHPYDVF-TEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLA------NTKKLSDVDPS   89 (221)
T ss_pred             cCccCHHHHHHHHHHH-HHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHH------ccCChhHCCHh
Confidence            3799999999 99998 667888888887765211110100              01233344      666777764  


Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC------CCCCCeeecCccchhhh-----
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG------LLKGKKATAFPAMCNKL-----  178 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG------LL~g~~~T~h~~~~~~~-----  178 (232)
                      +.|.|+||||.+....+..++++++||+++.+++++|++||+|+ ++|+++|      ||+||++|+||...+.+     
T Consensus        90 ~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~  168 (221)
T cd03141          90 DYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKK  168 (221)
T ss_pred             HceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccC
Confidence            46779999997434456789999999999999999999999996 7799999      79999999999876553     


Q ss_pred             ----------ccC--ccC-----CCcEEEcCCEEEcCChhhHHHHHHHHHHHh
Q 026831          179 ----------SDQ--SEI-----ENRVVVDGNLITSRGPGTSMEFALAIVEKF  214 (232)
Q Consensus       179 ----------~~~--~~~-----d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~  214 (232)
                                ++.  .+.     +..+|+|||++|++|+.++.++++++|+.+
T Consensus       169 ~~~~~~~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         169 VVPFLLEDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             cCCcCHHHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence                      332  222     366999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.85  E-value=6.4e-21  Score=151.47  Aligned_cols=134  Identities=36%  Similarity=0.604  Sum_probs=107.8

Q ss_pred             EEEEeccccccCCccccccccc---eEEeeccCCccchhHHHhhh--ccceeccCChhhHHhhhcC-HHHHHHHHHHHhC
Q 026831           69 AHLIREQRRIFQPEEEEEEEEE---VRVIRKSEDNMSREFEKAAR--RLENARLGGLGGAQAFAKS-EKLVNMLKKQKES  142 (232)
Q Consensus        69 ~~~v~~~~~~~~pv~s~~~~~G---l~v~~~~~~~~~~~~~~~~~--~d~livpGg~~~~~~~~~~-~~l~~~Lr~~~~~  142 (232)
                      +.+++...+  .++.++   .|   ..+.      ++..+++++.  .|.||+|||.++...+..+ +.++++|++++++
T Consensus         2 V~~vs~~~~--~~v~~~---~g~~~~~v~------~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~   70 (147)
T PF01965_consen    2 VDVVSPGDG--KEVTGS---HGSFGIKVT------PDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEA   70 (147)
T ss_dssp             EEEEESSSS--SEEEBT---TSHHHHEEE------SSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCC--CeEEcC---CCcCCEEEE------CCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHc
Confidence            445555444  134443   36   9999      9999998754  5679999998656667645 9999999999999


Q ss_pred             CCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccC--CCcEEEcC-CEEEcCChhhHHHHHHHHHHHh
Q 026831          143 NRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEI--ENRVVVDG-NLITSRGPGTSMEFALAIVEKF  214 (232)
Q Consensus       143 g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~--d~~~v~Dg-~~iTa~g~~a~~d~~l~lI~~~  214 (232)
                      +++|++||+|+ .+|+++|+|+|+++|+|+...+.++..  .+.  +..+++|| |+||+.|+.+++++++.+|+.+
T Consensus        71 ~k~iaaIC~g~-~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L  146 (147)
T PF01965_consen   71 GKPIAAICHGP-AVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL  146 (147)
T ss_dssp             T-EEEEETTCH-HHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             CCeEEecCCCc-chhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence            99999999997 679999999999999999988866653  344  48889999 9999999999999999999986

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.83  E-value=1.6e-20  Score=159.99  Aligned_cols=157  Identities=18%  Similarity=0.253  Sum_probs=119.3

Q ss_pred             CCccccccc-chhhhccCCCceEEEEeccccccCCccc-c-----------------ccccceEEeeccCCccchhHHHh
Q 026831           48 PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEE-E-----------------EEEEEVRVIRKSEDNMSREFEKA  108 (232)
Q Consensus        48 ~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s-~-----------------~~~~Gl~v~~~~~~~~~~~~~~~  108 (232)
                      .||++.|+. |++++ ...|..+.+++.++..  +... +                 ....+.++.      .+..++++
T Consensus        20 tG~~~~E~~~p~~~l-~~aG~~VdiaS~~g~~--~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~l~dv   90 (231)
T cd03147          20 TGVFFSEALHPFNVF-REAGFEVDFVSETGTF--GFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLK------NIKKADEV   90 (231)
T ss_pred             cccCHHHHHHHHHHH-HHCCCEEEEECCCCCC--CCCccccccccCCHHHHHHHhcchHHHHHHHh------ccCChhHC
Confidence            799999999 99998 6778888888876541  1100 0                 000122233      44556664


Q ss_pred             --hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc-------CCCCCCeeecCccch----
Q 026831          109 --ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLKGKKATAFPAMC----  175 (232)
Q Consensus       109 --~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a-------GLL~g~~~T~h~~~~----  175 (232)
                        .+.|.||||||++++.++..|+.++++|++++++|++|++||+|++ +|+.+       ||++||++|+|+..+    
T Consensus        91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~  169 (231)
T cd03147          91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIM  169 (231)
T ss_pred             CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhh
Confidence              2467799999987677789999999999999999999999999985 57776       999999999998754    


Q ss_pred             ---------------hhhcc--CccC------CCcEEEcCCEEEcCChhhHHHHHHHHHHHh
Q 026831          176 ---------------NKLSD--QSEI------ENRVVVDGNLITSRGPGTSMEFALAIVEKF  214 (232)
Q Consensus       176 ---------------~~~~~--~~~~------d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~  214 (232)
                                     +.+++  ..+.      +..+|+|||+||+.++.++.++++.+|+++
T Consensus       170 ~~~~~~~~~~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         170 GVMEILKKRNLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             hhhhhhcccCCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                           22332  2222      456899999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>PRK04155 chaperone protein HchA; Provisional

Probab=99.82  E-value=8.7e-20  Score=159.77  Aligned_cols=170  Identities=20%  Similarity=0.233  Sum_probs=125.1

Q ss_pred             CCCccEEEEEec--------------CCccccccc-chhhhccCCCceEEEEeccccccCCccccccc------------
Q 026831           36 YRRLEVILTTVA--------------PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEE------------   88 (232)
Q Consensus        36 ~~~~~~I~iLl~--------------~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~------------   88 (232)
                      |...++|.+++.              .||++.|+. |.+.+ ...|..+.+++..++   ++....++            
T Consensus        46 ~~~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L-~~AG~eVdiAS~~G~---~~~~d~~s~~~~d~~v~~~~  121 (287)
T PRK04155         46 YRGGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHL-HKAGFEFDVATLSGN---PVKFEYWAMPHEDEAVMGFY  121 (287)
T ss_pred             CCCCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHH-HHCCCEEEEEecCCC---ccccccccccccchhHHHHH
Confidence            444458888864              688888998 98888 677888888888664   22111000            


Q ss_pred             --cceEEeeccCCccchhHHHh--------hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831           89 --EEVRVIRKSEDNMSREFEKA--------ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE  158 (232)
Q Consensus        89 --~Gl~v~~~~~~~~~~~~~~~--------~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA  158 (232)
                        .+-++.      .+..++++        .+.|.||||||++.+.++..++.+.++|+.+++++++|++||+|++ +|.
T Consensus       122 ~~~~~~l~------~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll  194 (287)
T PRK04155        122 EKYKSKFK------QPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALL  194 (287)
T ss_pred             HHhhhhcc------CceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHH
Confidence              011111      22223332        1356699999987778889999999999999999999999999985 477


Q ss_pred             hcC------CCCCCeeecCccc-------------------hhhhccC--ccCC----CcEEEcCCEEEcCChhhHHHHH
Q 026831          159 PHG------LLKGKKATAFPAM-------------------CNKLSDQ--SEIE----NRVVVDGNLITSRGPGTSMEFA  207 (232)
Q Consensus       159 ~aG------LL~g~~~T~h~~~-------------------~~~~~~~--~~~d----~~~v~Dg~~iTa~g~~a~~d~~  207 (232)
                      .+|      |++||++|+++..                   ++.+++.  .+.+    ..+|+|||+||+.|+.++.+++
T Consensus       195 ~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa  274 (287)
T PRK04155        195 AAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALG  274 (287)
T ss_pred             HcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHH
Confidence            788      9999999998765                   3344432  2333    6899999999999999999999


Q ss_pred             HHHHHHhcC
Q 026831          208 LAIVEKFFG  216 (232)
Q Consensus       208 l~lI~~~~G  216 (232)
                      +.+++.+.-
T Consensus       275 ~~~~~~Ll~  283 (287)
T PRK04155        275 KLAAQELLA  283 (287)
T ss_pred             HHHHHHHHH
Confidence            999998753

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.80  E-value=3.3e-19  Score=151.97  Aligned_cols=164  Identities=15%  Similarity=0.147  Sum_probs=124.0

Q ss_pred             EEEecCCccccccc-chhhhccCCCceEEEEeccccccCCcccc-c-----------cccceEEeeccCCccchhHHHh-
Q 026831           43 LTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEE-E-----------EEEEVRVIRKSEDNMSREFEKA-  108 (232)
Q Consensus        43 ~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~-~-----------~~~Gl~v~~~~~~~~~~~~~~~-  108 (232)
                      +-.+..||++.|+. |++++ ...|..+.+++.+++.. +.... .           ...+..+.      .+..++++ 
T Consensus        16 ~~~~~tG~~~~El~~p~~~l-~~aG~~V~~aS~~g~~~-~~d~~s~~~~~~~~~~~~~~~~~~l~------~~~~l~~v~   87 (232)
T cd03148          16 GKLFSTGNHPVEMLLPLYHL-HAAGFDFDVATLSGLPV-KFEYWAMPHEDEAVMPFFEKHKSKLR------NPKKLADVV   87 (232)
T ss_pred             CCCcCCCCcHHHHHHHHHHH-HHCCCEEEEEeCCCCcC-ccCccccccccHHHHHHHHHHHHHhc------CCCCHHHhh
Confidence            34457999999999 99999 67788899888866511 11000 0           00122222      45556655 


Q ss_pred             -------hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCC------CCCCeeecCccch
Q 026831          109 -------ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGL------LKGKKATAFPAMC  175 (232)
Q Consensus       109 -------~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGL------L~g~~~T~h~~~~  175 (232)
                             .+.|.||+|||+++++++..|+.+.+++++++++|++|++||+||+ +|..+++      ++||++|+++..+
T Consensus        88 ~~~~~~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~e  166 (232)
T cd03148          88 ASLNADDSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSL  166 (232)
T ss_pred             hhccCChhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHH
Confidence                   2467799999987788899999999999999999999999999985 4777888      9999999999877


Q ss_pred             hhhc--------------------cC--cc----CCCcEEEcCCEEEcCChhhHHHHHHHHHHHhc
Q 026831          176 NKLS--------------------DQ--SE----IENRVVVDGNLITSRGPGTSMEFALAIVEKFF  215 (232)
Q Consensus       176 ~~~~--------------------~~--~~----~d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~  215 (232)
                      |...                    +.  .+    .+..+|+||++||+.++.|+..++..+|+.+.
T Consensus       167 E~~~~~~~~~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~  232 (232)
T cd03148         167 DEGANIEIGYMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML  232 (232)
T ss_pred             HHhhhhccccccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence            6432                    10  11    24578999999999999999999999998763

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.72  E-value=2.5e-17  Score=129.72  Aligned_cols=110  Identities=16%  Similarity=0.141  Sum_probs=92.8

Q ss_pred             cEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hccceec
Q 026831           40 EVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENAR  116 (232)
Q Consensus        40 ~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~liv  116 (232)
                      ++|+||++|||++.|+. |.+.+ ...+.++.+++.+++   ++.++   .|+.+.      ++.+|++.+  +.|.|+|
T Consensus         2 ~~v~ill~~g~~~~e~~~~~~~~-~~a~~~v~vvs~~~~---~v~s~---~g~~i~------~~~~l~~~~~~~~D~liV   68 (142)
T cd03132           2 RKVGILVADGVDAAELSALKAAL-KAAGANVKVVAPTLG---GVVDS---DGKTLE------VDQTYAGAPSVLFDAVVV   68 (142)
T ss_pred             CEEEEEEcCCcCHHHHHHHHHHH-HHCCCEEEEEecCcC---ceecC---CCcEEe------cceeecCCChhhcCEEEE
Confidence            68999999999999999 88888 455788899999887   77765   499998      888887754  3678999


Q ss_pred             cCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCC
Q 026831          117 LGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLL  163 (232)
Q Consensus       117 pGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL  163 (232)
                      |||......+..++++.+||+++++++++|+++|+|+ ++||++|||
T Consensus        69 pGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~-~~La~aGll  114 (142)
T cd03132          69 PGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS-DLLEAAGIP  114 (142)
T ss_pred             CCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH-HHHHHcCCC
Confidence            9996433334678999999999999999999999995 789999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.72  E-value=4.8e-17  Score=137.36  Aligned_cols=157  Identities=17%  Similarity=0.178  Sum_probs=109.2

Q ss_pred             cEEEEEec-----CCccccccc-chhhhccCCCceEEEEeccccccCCcccc-----ccccceEEeec-cCCccchhHHH
Q 026831           40 EVILTTVA-----PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEE-----EEEEEVRVIRK-SEDNMSREFEK  107 (232)
Q Consensus        40 ~~I~iLl~-----~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~-----~~~~Gl~v~~~-~~~~~~~~~~~  107 (232)
                      ++|+|++.     |||+..|+. |.+.+ ...|..+.+++.+++........     ....++.+... ........+++
T Consensus         2 kkVlills~~~~~dG~e~~E~~~P~~~L-~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (217)
T PRK11780          2 KKIAVILSGCGVYDGSEIHEAVLTLLAL-DRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE   80 (217)
T ss_pred             CEEEEEEccCCCCCCEehhHHHHHHHHH-HHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence            58999997     999999999 99988 67788888888766421110000     00112222200 00001145666


Q ss_pred             h--hhccceeccCChhhHHh----------hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecC--cc
Q 026831          108 A--ARRLENARLGGLGGAQA----------FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAF--PA  173 (232)
Q Consensus       108 ~--~~~d~livpGg~~~~~~----------~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h--~~  173 (232)
                      +  .+.|.||+|||++....          +..++.+++++++++++|++|++||+|++ +|+.+.. +||++|++  +.
T Consensus        81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~~T~~~~~~  158 (217)
T PRK11780         81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVKLTIGNDED  158 (217)
T ss_pred             CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcEEEecCChh
Confidence            5  24677999999754322          24589999999999999999999999985 5777632 89999999  88


Q ss_pred             chhhhccC--ccCCC---cEEEc--CCEEEcCC
Q 026831          174 MCNKLSDQ--SEIEN---RVVVD--GNLITSRG  199 (232)
Q Consensus       174 ~~~~~~~~--~~~d~---~~v~D--g~~iTa~g  199 (232)
                      ..+.++++  .+.+.   .+|+|  ||++||..
T Consensus       159 ~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~  191 (217)
T PRK11780        159 TAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPA  191 (217)
T ss_pred             hHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCc
Confidence            88888874  45553   67777  78999985

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.65  E-value=5.5e-16  Score=130.41  Aligned_cols=152  Identities=17%  Similarity=0.210  Sum_probs=102.9

Q ss_pred             ecCCccccccc-chhhhccCCCceEEEEeccccccCCcc-----ccccccceEEeecc-CCccchhHHHh--hhccceec
Q 026831           46 VAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEE-----EEEEEEEVRVIRKS-EDNMSREFEKA--ARRLENAR  116 (232)
Q Consensus        46 l~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~-----s~~~~~Gl~v~~~~-~~~~~~~~~~~--~~~d~liv  116 (232)
                      .+|||++.|+. |..++ ...|..+.+++.+++......     ......++.+.... .......++++  .+.|.|||
T Consensus        10 ~~dg~E~~El~~p~~~L-~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalvi   88 (213)
T cd03133          10 VYDGSEIHEAVLTLLAL-DRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIF   88 (213)
T ss_pred             CCCCccHHHHHHHHHHH-HHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEE
Confidence            48999999999 99988 677888888887654211000     00011244333000 00011456664  24677999


Q ss_pred             cCChhhHHhh----------hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCc--cchhhhccC--c
Q 026831          117 LGGLGGAQAF----------AKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP--AMCNKLSDQ--S  182 (232)
Q Consensus       117 pGg~~~~~~~----------~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~--~~~~~~~~~--~  182 (232)
                      |||.++...+          ..++.+++++++++++|++|++||+|++ +|++++. +||++|+|+  ..++.+++.  .
T Consensus        89 PGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~  166 (213)
T cd03133          89 PGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAE  166 (213)
T ss_pred             CCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCE
Confidence            9997543222          2488999999999999999999999985 5888765 999999999  777788763  3


Q ss_pred             cCC---CcEEEc--CCEEEcCCh
Q 026831          183 EIE---NRVVVD--GNLITSRGP  200 (232)
Q Consensus       183 ~~d---~~~v~D--g~~iTa~g~  200 (232)
                      +.+   ..+++|  ||+|||...
T Consensus       167 ~~d~~~~~vvvd~dg~lITs~~~  189 (213)
T cd03133         167 HVNCPVEEIVVDEKNKVVTTPAY  189 (213)
T ss_pred             EEeCCCCeEEEECCCCEEeCccc
Confidence            443   355555  799999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.34  E-value=2.9e-12  Score=124.13  Aligned_cols=113  Identities=11%  Similarity=0.020  Sum_probs=96.4

Q ss_pred             CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhh--ccce
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAAR--RLEN  114 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~--~d~l  114 (232)
                      +.++|+||++|||...++. +..++ ...|..+.+|+.+.+   ++.+.   .|..+.      ++.+|++.+.  .|.|
T Consensus       596 ~gRKIaILVaDG~d~~ev~~~~daL-~~AGa~V~VVSp~~G---~V~~s---~G~~I~------aD~t~~~~~Sv~FDAV  662 (752)
T PRK11249        596 KGRKVAILLNDGVDAADLLAILKAL-KAKGVHAKLLYPRMG---EVTAD---DGTVLP------IAATFAGAPSLTFDAV  662 (752)
T ss_pred             cccEEEEEecCCCCHHHHHHHHHHH-HHCCCEEEEEECCCC---eEECC---CCCEEe------cceeeccCCccCCCEE
Confidence            4689999999999999998 77777 556788899998887   77665   499999      9989988754  6789


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCC
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  164 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~  164 (232)
                      +||||..+...+..+++++.||+++++++|+|+++|+|+ .+|+++||.+
T Consensus       663 vVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~-~LLaaAGL~~  711 (752)
T PRK11249        663 IVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDAR-KLKAALKLPD  711 (752)
T ss_pred             EECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccH-HHHHhcCCCC
Confidence            999996446667789999999999999999999999995 7899999955

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.82  E-value=1.1e-08  Score=86.69  Aligned_cols=57  Identities=25%  Similarity=0.310  Sum_probs=45.4

Q ss_pred             hccceeccCChhhHH-----hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCe
Q 026831          110 RRLENARLGGLGGAQ-----AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK  167 (232)
Q Consensus       110 ~~d~livpGg~~~~~-----~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~  167 (232)
                      +.|.|+||||....+     ....++.+.+||+++.++++++++||+|+ ++|+++|||+|+-
T Consensus        41 ~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~GLL~g~l  102 (219)
T PRK03619         41 GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGF-QILTEAGLLPGAL  102 (219)
T ss_pred             CCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCeE
Confidence            456699999853211     12345789999999999999999999995 7899999999964

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=98.51  E-value=1.6e-07  Score=80.50  Aligned_cols=87  Identities=17%  Similarity=0.082  Sum_probs=57.1

Q ss_pred             hccceeccCChhhHHhhh-----cCHH-HHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhcc-Cc
Q 026831          110 RRLENARLGGLGGAQAFA-----KSEK-LVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSD-QS  182 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~-----~~~~-l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~-~~  182 (232)
                      +.|.|+||||....+.+.     .... +.++|+++.++++++.+||.|. .+|+++|+|.|+. +.++........ ..
T Consensus        43 ~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~-QlL~~~gll~g~~-~~~~~~~~~~~~~~~  120 (238)
T cd01740          43 DYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGF-QILVELGLLPGAL-IRNKGLKFICRWQNR  120 (238)
T ss_pred             hCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHH-HHHHHcCCCcccc-ccCCCCceeccccCc
Confidence            356699999963222111     1122 8899999999999999999996 6799999999977 555443322221 12


Q ss_pred             cCCCcEEEcCCEEEcC
Q 026831          183 EIENRVVVDGNLITSR  198 (232)
Q Consensus       183 ~~d~~~v~Dg~~iTa~  198 (232)
                      +.+..++.+++++|+.
T Consensus       121 ~v~~~v~~~~si~t~~  136 (238)
T cd01740         121 FVTLRVENNDSPFTKG  136 (238)
T ss_pred             eEEEEEcCCCCceecC
Confidence            3344445566777764

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.40  E-value=9.3e-07  Score=75.21  Aligned_cols=56  Identities=23%  Similarity=0.302  Sum_probs=43.9

Q ss_pred             hccceeccCChhhHH-----hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCC
Q 026831          110 RRLENARLGGLGGAQ-----AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK  166 (232)
Q Consensus       110 ~~d~livpGg~~~~~-----~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~  166 (232)
                      +.|.|+||||....+     ....+..+.++|+++.+.+++|.+||.|. .+|+++|+|+|.
T Consensus        40 ~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~-QlLa~~GlL~G~  100 (227)
T TIGR01737        40 DYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGF-QILVEAGLLPGA  100 (227)
T ss_pred             CCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHH-HHHHHcCCCCCc
Confidence            456799999863111     12235668899999999999999999995 789999999984

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.36  E-value=1.1e-06  Score=76.38  Aligned_cols=98  Identities=13%  Similarity=0.085  Sum_probs=61.7

Q ss_pred             cEEEEEecCCcc-cccccchhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccceeccC
Q 026831           40 EVILTTVAPGYF-RNHLMPKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARLG  118 (232)
Q Consensus        40 ~~I~iLl~~gf~-~~el~p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~livpG  118 (232)
                      ++|+||.+||+. +.|..  ..+ ...|..+.++.....      .         .      ....   ..+.|.|+|||
T Consensus         4 ~kvaVl~~pG~n~d~e~~--~Al-~~aG~~v~~v~~~~~------~---------~------~~~~---l~~~DgLvipG   56 (261)
T PRK01175          4 IRVAVLRMEGTNCEDETV--KAF-RRLGVEPEYVHINDL------A---------A------ERKS---VSDYDCLVIPG   56 (261)
T ss_pred             CEEEEEeCCCCCCHHHHH--HHH-HHCCCcEEEEeeccc------c---------c------cccc---hhhCCEEEECC
Confidence            589999999996 55554  222 233544444432110      0         0      0011   22467799999


Q ss_pred             ChhhHHhhhc--------CHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCC
Q 026831          119 GLGGAQAFAK--------SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG  165 (232)
Q Consensus       119 g~~~~~~~~~--------~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g  165 (232)
                      |....+.+..        .+.+.+.|+++.++++++.+||.|. .+|+++|||.|
T Consensus        57 Gfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~-QlLa~~GlLpg  110 (261)
T PRK01175         57 GFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGF-QVLVELGLLPG  110 (261)
T ss_pred             CCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHH-HHHHHCCCCCC
Confidence            9532111111        1234588899999999999999995 67999999988

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=97.90  E-value=2.5e-05  Score=65.82  Aligned_cols=53  Identities=21%  Similarity=0.332  Sum_probs=42.3

Q ss_pred             ccceeccCChhhHHhhh------cCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCC
Q 026831          111 RLENARLGGLGGAQAFA------KSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKG  165 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~------~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g  165 (232)
                      .|.|++|||+. .-++.      .-+.+++-++++.++|+++.+||+| ..+|.++|||.|
T Consensus        44 ~d~vv~pGGFS-yGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNG-fQiL~e~gLlPG  102 (231)
T COG0047          44 FDGVVLPGGFS-YGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNG-FQILSEAGLLPG  102 (231)
T ss_pred             ccEEEEcCCCC-cccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcch-hHHHHHcCcCCc
Confidence            45589999973 22221      2378888899999999999999999 577999999999

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.90  E-value=3e-05  Score=55.58  Aligned_cols=91  Identities=18%  Similarity=0.231  Sum_probs=59.3

Q ss_pred             EEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccceeccCCh
Q 026831           42 ILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENARLGGL  120 (232)
Q Consensus        42 I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~livpGg~  120 (232)
                      |++++++++...++. +...+ ...+..+..++....   +.           .      .   .+...+.|.+++|||.
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~---~~-----------~------~---~~~~~~~d~lii~g~~   56 (115)
T cd01653           1 VAVLLFPGFEELELASPLDAL-REAGAEVDVVSPDGG---PV-----------E------S---DVDLDDYDGLILPGGP   56 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHH-HHCCCeEEEEcCCCC---ce-----------e------c---cCChhccCEEEECCCC
Confidence            578889999887666 44444 333444555544332   11           1      0   1122345679999986


Q ss_pred             hhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhh
Q 026831          121 GGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVL  157 (232)
Q Consensus       121 ~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lL  157 (232)
                      ........++..+++++++..++++++++|.|+ ++|
T Consensus        57 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~-~~l   92 (115)
T cd01653          57 GTPDDLARDEALLALLREAAAAGKPILGICLGA-QLL   92 (115)
T ss_pred             CchhhhccCHHHHHHHHHHHHcCCEEEEECchh-HhH
Confidence            433222247999999999999999999999995 655

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=97.67  E-value=4.6e-05  Score=62.53  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=41.2

Q ss_pred             hhhccceeccCChhhHH--hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh----cCCCCC
Q 026831          108 AARRLENARLGGLGGAQ--AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP----HGLLKG  165 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~--~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~----aGLL~g  165 (232)
                      ....|.|++|||.. ..  .+.++..+.+.|+++.+ ++++.+||.|+ .+|++    .|+++|
T Consensus        37 l~~~D~LILPGG~~-t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~-qlL~~~s~~Lg~idg   97 (179)
T PRK13526         37 FDSIDRLVIPGGES-TTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGS-IILSKGEGYLNLLDL   97 (179)
T ss_pred             HhCCCEEEECCChH-HHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHH-HHHHccCCCCCCccE
Confidence            34567799999953 33  45566679999999885 78999999997 66887    355554

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=97.56  E-value=8.8e-05  Score=61.16  Aligned_cols=52  Identities=15%  Similarity=0.091  Sum_probs=40.0

Q ss_pred             hhhccceeccCChhhH-HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          108 AARRLENARLGGLGGA-QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       108 ~~~~d~livpGg~~~~-~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .++.|.|+||||.... ..+..+..+.++||++.++++++.+||.|. .+|++.
T Consensus        34 l~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~-qlL~~~   86 (184)
T TIGR03800        34 LDEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL-IMLAKE   86 (184)
T ss_pred             hccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH-HHHHhh
Confidence            3456779999996422 123345678899999999999999999995 679977

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=97.56  E-value=8.9e-05  Score=61.73  Aligned_cols=50  Identities=18%  Similarity=0.187  Sum_probs=39.6

Q ss_pred             hhccceeccCChhh--HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          109 ARRLENARLGGLGG--AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       109 ~~~d~livpGg~~~--~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      ++.|.|++|||...  ...+.++..+.+.|+++.++|++|.+||.|. .+|++
T Consensus        39 ~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~-qlL~~   90 (198)
T cd03130          39 PDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGL-MYLGE   90 (198)
T ss_pred             CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccH-HHHHH
Confidence            34577999999643  2345566789999999999999999999996 56874

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=97.51  E-value=0.00022  Score=59.32  Aligned_cols=52  Identities=19%  Similarity=0.231  Sum_probs=39.1

Q ss_pred             hhhccceeccCChhhH-HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          108 AARRLENARLGGLGGA-QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       108 ~~~~d~livpGg~~~~-~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +++.|.|++|||.... .....+..+.++|+++.+.++++.+||.|. .+|+++
T Consensus        41 l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~-Qll~~~   93 (200)
T PRK13527         41 LPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL-ILLAKE   93 (200)
T ss_pred             hccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH-HHHHhh
Confidence            3356779999996422 122344568999999999999999999995 678876

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.46  E-value=0.00033  Score=47.82  Aligned_cols=44  Identities=23%  Similarity=0.336  Sum_probs=34.3

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchh
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASP  153 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~  153 (232)
                      ..|.+++|||.........+....++++++..++++++++|.|+
T Consensus        46 ~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~   89 (92)
T cd03128          46 DYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGA   89 (92)
T ss_pred             cCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEeccc
Confidence            35669999986422222246899999999999999999999995

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.38  E-value=0.0018  Score=52.02  Aligned_cols=100  Identities=22%  Similarity=0.327  Sum_probs=62.7

Q ss_pred             hccceeccCChhhHHhhh----------cCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc-CCCCCCeeecC--ccchh
Q 026831          110 RRLENARLGGLGGAQAFA----------KSEKLVNMLKKQKESNRPYGAICASPALVLEPH-GLLKGKKATAF--PAMCN  176 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~----------~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a-GLL~g~~~T~h--~~~~~  176 (232)
                      +.|.|++|||++...++.          -++++....+.+++.||+++-+|..|+. |.+- |  .+.+.|..  ....+
T Consensus        85 ~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m-~pki~g--~~~~~TIGnD~dTa~  161 (217)
T COG3155          85 ELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAM-LPKIFG--FPLRLTIGNDIDTAE  161 (217)
T ss_pred             hcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHH-HHHHcC--CceeEEecCCccHHH
Confidence            467899999986433322          2799999999999999999999999864 6643 3  23345543  33345


Q ss_pred             hhccC-----c-cCCCcEEE-cCCEEEcCChhhHHHHHHHHHHHhcC
Q 026831          177 KLSDQ-----S-EIENRVVV-DGNLITSRGPGTSMEFALAIVEKFFG  216 (232)
Q Consensus       177 ~~~~~-----~-~~d~~~v~-Dg~~iTa~g~~a~~d~~l~lI~~~~G  216 (232)
                      .|.+.     . ..|..+++ +.+++|...    +-++-.+-+.-.|
T Consensus       162 a~~~mG~eHv~cPvd~iV~D~~~KvvtTPA----YMLA~~IaeAAsG  204 (217)
T COG3155         162 ALEEMGAEHVPCPVDDIVVDEDNKVVTTPA----YMLAQNIAEAASG  204 (217)
T ss_pred             HHHHhCcccCCCCccceeecCCCceecChH----HHHHHHHHHHHhh
Confidence            55553     1 23444443 467888753    3344444444444

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.11  E-value=0.00074  Score=56.22  Aligned_cols=52  Identities=15%  Similarity=0.101  Sum_probs=38.6

Q ss_pred             hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..+.|.+++|||..........+.+.++|+++.++++++.+||.|. .+|+++
T Consensus        36 ~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~-q~l~~~   87 (200)
T PRK13143         36 ILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGM-QLLFES   87 (200)
T ss_pred             HccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH-HHHhhh
Confidence            3456778999963212223445678899999999999999999996 678875

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=97.08  E-value=0.00081  Score=55.57  Aligned_cols=53  Identities=17%  Similarity=0.135  Sum_probs=39.4

Q ss_pred             HhhhccceeccCChhhH-HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          107 KAARRLENARLGGLGGA-QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       107 ~~~~~d~livpGg~~~~-~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++.+.|.+++|||.... +....+..+.++||++.++++++.+||.|. .+|+++
T Consensus        35 ~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~-QlL~~~   88 (189)
T PRK13525         35 DLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGM-ILLAKE   88 (189)
T ss_pred             HhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHH-HHHHhh
Confidence            34456779999996322 123345667899999999999999999996 668863

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.07  E-value=0.00061  Score=54.64  Aligned_cols=51  Identities=18%  Similarity=0.171  Sum_probs=40.5

Q ss_pred             hhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          109 ARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       109 ~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++.|.|++|||.+...+  +.++..+.+.||++.++|.+|.++|.| ..+|.+.
T Consensus         6 ~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG-~~~Lg~~   58 (158)
T PF07685_consen    6 PDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG-YQYLGES   58 (158)
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH-HHHHHHH
Confidence            35678999999854332  345778999999999999999999999 4667754

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=96.94  E-value=0.00063  Score=56.42  Aligned_cols=50  Identities=18%  Similarity=0.110  Sum_probs=36.7

Q ss_pred             hccceeccCChhhHHhhhc--CHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAK--SEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~--~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|++|||......+..  +..+.+.|+++.++|++|.+||.|. .+|++.
T Consensus        37 ~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~-qlL~~~   88 (194)
T cd01750          37 DADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGY-QMLGKY   88 (194)
T ss_pred             CCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHH-HHhhhh
Confidence            4566999999622222222  4468899999999999999999996 668755

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=96.83  E-value=0.0018  Score=55.82  Aligned_cols=54  Identities=20%  Similarity=0.239  Sum_probs=39.9

Q ss_pred             HHhhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          106 EKAARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       106 ~~~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++++..|.||+|||... +..+.....+.+.|+++.++|+++.++|.|. .+|++.
T Consensus        34 ~~L~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gm-qlLa~~   88 (248)
T PLN02832         34 EQLEGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGL-IFLAER   88 (248)
T ss_pred             HHhccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhH-HHHHHH
Confidence            45556678999999742 2233333458889999988999999999995 668754

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=96.81  E-value=0.0016  Score=53.95  Aligned_cols=52  Identities=17%  Similarity=0.133  Sum_probs=37.8

Q ss_pred             HhhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          107 KAARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       107 ~~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++.+.|.|++||+.. ...   ...++.+.++|+++.++++++.+||.|. .+|+++
T Consensus        33 ~l~~~d~iiipG~~~-~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~-q~l~~~   87 (198)
T cd01748          33 EILSADKLILPGVGA-FGDAMANLRERGLIEALKEAIASGKPFLGICLGM-QLLFES   87 (198)
T ss_pred             HhccCCEEEECCCCc-HHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH-HHhccc
Confidence            344567789999732 221   1233457899999999999999999995 679886

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=96.80  E-value=0.0018  Score=53.18  Aligned_cols=53  Identities=15%  Similarity=0.176  Sum_probs=38.9

Q ss_pred             HhhhccceeccCChhhHH-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          107 KAARRLENARLGGLGGAQ-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       107 ~~~~~d~livpGg~~~~~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +..+.|.+++|||..... ....+..+.++|+++.++++++.++|.|. .+|+++
T Consensus        32 ~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~-qlL~~~   85 (183)
T cd01749          32 DLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGL-ILLAKE   85 (183)
T ss_pred             HhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHH-HHHHHH
Confidence            344567799999863211 12244567899999999999999999995 678854

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=96.73  E-value=0.0018  Score=53.01  Aligned_cols=55  Identities=18%  Similarity=0.111  Sum_probs=44.3

Q ss_pred             hHHHhhhccceeccCChh-hHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          104 EFEKAARRLENARLGGLG-GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       104 ~~~~~~~~d~livpGg~~-~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      .-++++..|.|+||||.. .+..+.....+.+-|+++..+|+++.+.|.|. .+||+
T Consensus        32 ~~~dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGl-IlLak   87 (194)
T COG0311          32 RPEDLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGL-ILLAK   87 (194)
T ss_pred             CHHHhccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhh-hhhhh
Confidence            455565678899999963 24556677889999999999999999999995 66885

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=96.70  E-value=0.0027  Score=55.12  Aligned_cols=56  Identities=20%  Similarity=0.180  Sum_probs=38.9

Q ss_pred             hccceeccCChhhHHhh----------hcCHHHHHHHHHHHhC-CCcEEEEcchhHHhhhhcCCCCCC
Q 026831          110 RRLENARLGGLGGAQAF----------AKSEKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLKGK  166 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~----------~~~~~l~~~Lr~~~~~-g~~v~aic~G~~~lLA~aGLL~g~  166 (232)
                      +.+.|++|||...-+.+          ..++.+++.|+++.++ ++.+.+||.| .-+|.++|||.|.
T Consensus        46 ~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNG-fQiL~~~Gllp~~  112 (259)
T PF13507_consen   46 DFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNG-FQILVELGLLPGG  112 (259)
T ss_dssp             C-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHH-HHHHCCCCCSTT-
T ss_pred             hCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchH-hHHHHHhCcCCCc
Confidence            34558999986422211          1235568889999998 9999999999 5889999999983

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=96.67  E-value=0.0019  Score=60.30  Aligned_cols=50  Identities=16%  Similarity=0.162  Sum_probs=40.2

Q ss_pred             hhccceeccCChhh--HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          109 ARRLENARLGGLGG--AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       109 ~~~d~livpGg~~~--~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      |+.|.|++|||.+.  ...+..+..+.+.|+++.++|++|.++|.|. .+|++
T Consensus       286 ~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~-~~L~~  337 (451)
T PRK01077        286 PDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGL-MYLGE  337 (451)
T ss_pred             CCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHH-HHHHh
Confidence            44577999999743  2345677889999999999999999999996 56774

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.60  E-value=0.0021  Score=53.60  Aligned_cols=53  Identities=17%  Similarity=0.102  Sum_probs=37.2

Q ss_pred             HhhhccceeccCChhhHHhh--hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          107 KAARRLENARLGGLGGAQAF--AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       107 ~~~~~d~livpGg~~~~~~~--~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++.+.|.|+|||+.......  ...+.+.++|+++.++++++.+||.|. .+|++.
T Consensus        34 ~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~-Qll~~~   88 (205)
T PRK13141         34 EILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGM-QLLFES   88 (205)
T ss_pred             HhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH-HHhhhc
Confidence            44456778999964211111  122357899999999999999999995 679885

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=96.57  E-value=0.0016  Score=53.59  Aligned_cols=52  Identities=17%  Similarity=0.154  Sum_probs=38.0

Q ss_pred             HhhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCC-CcEEEEcchhHHhhhh
Q 026831          107 KAARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESN-RPYGAICASPALVLEP  159 (232)
Q Consensus       107 ~~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g-~~v~aic~G~~~lLA~  159 (232)
                      ++...|.||||||... +..+.....+.+-||++.++| ++|.+.|.|. .+||+
T Consensus        30 dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl-IlLa~   83 (188)
T PF01174_consen   30 DLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL-ILLAK   83 (188)
T ss_dssp             GGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHH-HHHEE
T ss_pred             HHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHH-HHhhh
Confidence            3344677999999642 445566778999999999998 9999999995 67886

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=96.55  E-value=0.0062  Score=63.04  Aligned_cols=108  Identities=15%  Similarity=0.074  Sum_probs=67.4

Q ss_pred             CccEEEEEecCCcc-ccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhH-HHhhhccce
Q 026831           38 RLEVILTTVAPGYF-RNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREF-EKAARRLEN  114 (232)
Q Consensus        38 ~~~~I~iLl~~gf~-~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~-~~~~~~d~l  114 (232)
                      +.+||+|+.+||.. ..|.. .+..    .|..+..+.-+.-.-.....     ++.           .+ ..+.+.+.|
T Consensus       976 ~kpkvaIl~~pGtNce~d~a~Af~~----aG~~~~~v~~~dl~~~~i~~-----s~~-----------~~~~~l~~~~~l 1035 (1239)
T TIGR01857       976 EKPRVVIPVFPGTNSEYDSAKAFEK----EGAEVNLVIFRNLNEEALVE-----SVE-----------TMVDEIDKSQIL 1035 (1239)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH----cCCceEEEEEecCccccccc-----chh-----------hhhcccccCcEE
Confidence            45799999999975 35555 3333    35444433322110001101     111           12 123345669


Q ss_pred             eccCChhhHH----------hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCC
Q 026831          115 ARLGGLGGAQ----------AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK  166 (232)
Q Consensus       115 ivpGg~~~~~----------~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~  166 (232)
                      ++|||+..-+          ....++.+.+-++++.++++.+.+||+| ..+|.+.|||.+.
T Consensus      1036 ~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNG-fQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857      1036 MLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNG-FQALVKSGLLPYG 1096 (1239)
T ss_pred             EEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechH-HHHHHHcCCCcCc
Confidence            9999863211          2334688999999999999999999999 5789999999853

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.13  E-value=0.0051  Score=51.06  Aligned_cols=53  Identities=23%  Similarity=0.118  Sum_probs=36.4

Q ss_pred             HhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          107 KAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       107 ~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++.+.|.||+||+......  ......+.++|+++.+.++++.+||.|. .+|+.+
T Consensus        34 ~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~-Qll~~~   88 (199)
T PRK13181         34 EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM-QLLFES   88 (199)
T ss_pred             HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH-HHhhhh
Confidence            3445677889996321111  1122346788998889999999999995 678886

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=95.83  E-value=0.0095  Score=55.70  Aligned_cols=50  Identities=14%  Similarity=0.130  Sum_probs=39.1

Q ss_pred             hhccceeccCChhhHH--hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          109 ARRLENARLGGLGGAQ--AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       109 ~~~d~livpGg~~~~~--~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      |+.|.|++|||.+...  .+..+..+.+.|+++.++|.+|.++|.| ..+|++
T Consensus       285 ~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG-~~~L~~  336 (449)
T TIGR00379       285 PDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGG-LMYLSQ  336 (449)
T ss_pred             CCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHH-HHHHHh
Confidence            3456799999985322  2445778899999999999999999999 466774

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=95.82  E-value=0.012  Score=49.61  Aligned_cols=60  Identities=20%  Similarity=0.197  Sum_probs=40.6

Q ss_pred             hhccceeccCChhhHHhh---hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc---------CCCCCCeeec
Q 026831          109 ARRLENARLGGLGGAQAF---AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH---------GLLKGKKATA  170 (232)
Q Consensus       109 ~~~d~livpGg~~~~~~~---~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a---------GLL~g~~~T~  170 (232)
                      ...|.|++||+. .....   ..+..+.+.|++..++++++.+||.|. .+|++.         |+++|+-...
T Consensus        38 ~~~d~iIlPG~g-~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~-Qll~~~~~~~~~~glg~~~G~v~~~  109 (210)
T CHL00188         38 AQVHALVLPGVG-SFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGL-HLLFETSEEGKEEGLGIYKGQVKRL  109 (210)
T ss_pred             hhCCEEEECCCC-chHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHH-HHHhhccccCCcCCccceeEEEEEC
Confidence            346778999943 12111   122245677888888899999999995 678864         5788766544

>PRK00784 cobyric acid synthase; Provisional

Probab=95.81  E-value=0.0089  Score=56.46  Aligned_cols=53  Identities=11%  Similarity=0.099  Sum_probs=39.6

Q ss_pred             HHhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          106 EKAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       106 ~~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +++|+.|.|++|||......  +..+..+.+.|+++.++|.++.++|.| ..+|++
T Consensus       286 ~~l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G-~~~L~~  340 (488)
T PRK00784        286 EPLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGG-YQMLGR  340 (488)
T ss_pred             cccccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHH-HHHHhh
Confidence            34555677999999743222  234556889999999999999999999 467875

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=95.62  E-value=0.013  Score=47.94  Aligned_cols=50  Identities=18%  Similarity=0.261  Sum_probs=37.0

Q ss_pred             hccceeccCChhhH-H-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGA-Q-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~-~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|+++||..+. . .....+.+.++|+++.++++++.+||.|. .+|+.+
T Consensus        46 ~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~-q~l~~~   97 (188)
T cd01741          46 DYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH-QLLARA   97 (188)
T ss_pred             cCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH-HHHHHH
Confidence            45669999996432 1 11123678999999999999999999996 667754

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=95.61  E-value=0.014  Score=54.98  Aligned_cols=51  Identities=10%  Similarity=0.001  Sum_probs=38.7

Q ss_pred             hhhccceeccCChhhHHhh--hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          108 AARRLENARLGGLGGAQAF--AKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~~~--~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +|+.|.|++|||.......  ..+..+.+.|+++.++|.+|.++|.| ..+|.+
T Consensus       282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG-~q~Lg~  334 (475)
T TIGR00313       282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGG-YQMLGK  334 (475)
T ss_pred             cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHH-HHHhhh
Confidence            4556789999997433222  23455788999999999999999999 577887

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=95.61  E-value=0.033  Score=58.39  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=42.6

Q ss_pred             ccceeccCChhh-------H---HhhhcCHHHHHHHHHHH-hCCCcEEEEcchhHHhhh-hcCCCCCC
Q 026831          111 RLENARLGGLGG-------A---QAFAKSEKLVNMLKKQK-ESNRPYGAICASPALVLE-PHGLLKGK  166 (232)
Q Consensus       111 ~d~livpGg~~~-------~---~~~~~~~~l~~~Lr~~~-~~g~~v~aic~G~~~lLA-~aGLL~g~  166 (232)
                      .+.|++|||+..       .   .....++.+.+.++++. +.++.+.+||+| ..+|. +.|||.|.
T Consensus      1101 ~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNG-fQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1101 FRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNG-CQMLSNLLEWIPGT 1167 (1310)
T ss_pred             eeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHH-HHHHHHHhCcCCCC
Confidence            355899998521       0   11345788999999998 889999999999 57788 99999874

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK08250 glutamine amidotransferase; Provisional

Probab=95.52  E-value=0.016  Score=49.52  Aligned_cols=49  Identities=6%  Similarity=0.110  Sum_probs=35.6

Q ss_pred             ccceeccCChhhHHh-hhcC-----HHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQA-FAKS-----EKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~-~~~~-----~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.+||.||..+..+ ....     ....+|||++.+.++++.+||.|. -+||++
T Consensus        46 ~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~-Qlla~a  100 (235)
T PRK08250         46 FDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGA-QLIGEA  100 (235)
T ss_pred             cCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhH-HHHHHH
Confidence            456889998533221 1111     467899999999999999999996 668865

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=95.45  E-value=0.042  Score=57.62  Aligned_cols=55  Identities=11%  Similarity=0.146  Sum_probs=41.6

Q ss_pred             hccceeccCChhh----------HHhhhcCHHHHHHHHHHH-hCCCcEEEEcchhHHhhhhcC-CCCC
Q 026831          110 RRLENARLGGLGG----------AQAFAKSEKLVNMLKKQK-ESNRPYGAICASPALVLEPHG-LLKG  165 (232)
Q Consensus       110 ~~d~livpGg~~~----------~~~~~~~~~l~~~Lr~~~-~~g~~v~aic~G~~~lLA~aG-LL~g  165 (232)
                      +.+.|++|||+..          ......|+.+.+.++++. ++++.+.+||+| ..+|.+.| |+.|
T Consensus      1080 ~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNG-fQ~L~~lg~l~p~ 1146 (1290)
T PRK05297       1080 DFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNG-CQMMSNLKEIIPG 1146 (1290)
T ss_pred             hCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHH-HHHHHHhCCccCC
Confidence            3456899998521          112335788999999966 889999999999 57899998 7765

>PRK07053 glutamine amidotransferase; Provisional

Probab=95.41  E-value=0.015  Score=49.65  Aligned_cols=49  Identities=16%  Similarity=0.139  Sum_probs=36.0

Q ss_pred             ccceeccCChhhHHhh---hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAF---AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~---~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.|||+||..+..+.   ..-....++||++.+.++++.+||.|. -+|+++
T Consensus        48 ~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~-Qlla~a   99 (234)
T PRK07053         48 PDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGA-QLIARA   99 (234)
T ss_pred             CCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccH-HHHHHH
Confidence            4558999985332221   122478899999999999999999995 678865

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.40  E-value=0.019  Score=48.11  Aligned_cols=55  Identities=16%  Similarity=0.118  Sum_probs=33.9

Q ss_pred             HHhhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC
Q 026831          106 EKAARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG  161 (232)
Q Consensus       106 ~~~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG  161 (232)
                      +++.+.|.|||||+......   +........+++...+.++++.+||.|. -+|+++|
T Consensus        37 ~~l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~-q~l~~~~   94 (209)
T PRK13146         37 DAVAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGM-QLLFERG   94 (209)
T ss_pred             HHhcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHH-HHHhhcc
Confidence            44456778999997421111   1111122334454556899999999995 6799873

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=95.37  E-value=0.024  Score=46.15  Aligned_cols=47  Identities=15%  Similarity=0.119  Sum_probs=35.9

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|+++||.+++.   .+....++++++.++++++.+||.|. .+|+.+
T Consensus        39 ~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~PvlGIC~G~-Q~l~~~   85 (178)
T cd01744          39 DPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIPIFGICLGH-QLLALA   85 (178)
T ss_pred             CCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCCEEEECHHH-HHHHHH
Confidence            356689999853332   34678889999999999999999996 567753

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.31  E-value=0.031  Score=46.98  Aligned_cols=55  Identities=20%  Similarity=0.182  Sum_probs=39.0

Q ss_pred             hHHHhhhccceeccCChh---hHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          104 EFEKAARRLENARLGGLG---GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       104 ~~~~~~~~d~livpGg~~---~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..+++...|.|++||+..   .+..+ ....+.+.|+++.++++++.+||.|. .+|+++
T Consensus        31 ~~~~l~~~d~iIlPG~g~~~~~~~~l-~~~gl~~~i~~~~~~~~pilGiC~G~-Q~l~~~   88 (210)
T PRK14004         31 DPETIENSKALILPGDGHFDKAMENL-NSTGLRSTIDKHVESGKPLFGICIGF-QILFES   88 (210)
T ss_pred             CHHHhccCCEEEECCCCchHHHHHHH-HHcCcHHHHHHHHHcCCCEEEECHhH-HHHHHh
Confidence            344444667799999852   12222 23358888999889999999999995 678874

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=95.29  E-value=0.017  Score=43.98  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=32.4

Q ss_pred             hccceeccCChhhHH-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831          110 RRLENARLGGLGGAQ-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLE  158 (232)
Q Consensus       110 ~~d~livpGg~~~~~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA  158 (232)
                      ..|.|++|||..... ....... .+.|+++.++|+++.+||.|+ . +|
T Consensus        44 ~ad~lVlPGGa~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGA-y-~a   90 (114)
T cd03144          44 KTALLVVPGGADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGA-Y-LA   90 (114)
T ss_pred             CCCEEEECCCChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCc-c-ce
Confidence            457799999853211 1122333 888888889999999999995 5 55

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PHA03366 FGAM-synthase; Provisional

Probab=95.21  E-value=0.057  Score=56.65  Aligned_cols=97  Identities=8%  Similarity=-0.038  Sum_probs=62.3

Q ss_pred             CccEEEEEecCCccc-cccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhcccee
Q 026831           38 RLEVILTTVAPGYFR-NHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENA  115 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~-~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~li  115 (232)
                      +.+||+|+.+||..- .|.+ .+..    .|..++.|.-+.-     .+.                . .+   .+.+.|+
T Consensus      1027 ~~prVaIl~~pG~N~~~e~~~Af~~----aGf~~~~v~~~dL-----~~~----------------~-~l---~~f~glv 1077 (1304)
T PHA03366       1027 KRHRVAVLLLPGCPGPHALLAAFTN----AGFDPYPVSIEEL-----KDG----------------T-FL---DEFSGLV 1077 (1304)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH----cCCceEEEEeecC-----CCC----------------C-cc---ccceEEE
Confidence            357999999999764 4444 3332    3544444332111     000                0 01   1233478


Q ss_pred             ccCChhh----------HHhhhcCHHHHHHHHHHH-hCCCcEEEEcc-hhHHhhhhcCCCC
Q 026831          116 RLGGLGG----------AQAFAKSEKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLLK  164 (232)
Q Consensus       116 vpGg~~~----------~~~~~~~~~l~~~Lr~~~-~~g~~v~aic~-G~~~lLA~aGLL~  164 (232)
                      +|||+..          ......|+.+.+.++++. +.++.+.+||+ | ..+|.+.|+|.
T Consensus      1078 ~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G-~Q~L~~lgll~ 1137 (1304)
T PHA03366       1078 IGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELG-CQILFALKAVG 1137 (1304)
T ss_pred             EcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHH-HHHHHHcCCcc
Confidence            8888632          112346889999999998 56999999999 9 68899999994

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=95.18  E-value=0.029  Score=46.50  Aligned_cols=49  Identities=14%  Similarity=0.001  Sum_probs=31.5

Q ss_pred             hccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|++||+......   +.... ...+++++.+.++++.+||.|. .+|+++
T Consensus        36 ~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~~~~~~pvlGiC~G~-Qll~~~   87 (196)
T TIGR01855        36 LADKLILPGVGAFGAAMARLRENG-LDLFVELVVRLGKPVLGICLGM-QLLFER   87 (196)
T ss_pred             cCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHHHhCCCCEEEECHHH-HHhhhc
Confidence            4566888995311111   11111 3344477888899999999995 679987

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.09  E-value=0.026  Score=46.77  Aligned_cols=51  Identities=16%  Similarity=0.164  Sum_probs=29.7

Q ss_pred             HHhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          106 EKAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       106 ~~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +++...|.||+||.......  ..+...+.+.|+   +.+++|.+||.|. .+|+++
T Consensus        34 ~~~~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~---~~~~PilGIClG~-Qll~~~   86 (196)
T PRK13170         34 DVILAADKLFLPGVGTAQAAMDQLRERELIDLIK---ACTQPVLGICLGM-QLLGER   86 (196)
T ss_pred             HHhCCCCEEEECCCCchHHHHHHHHHcChHHHHH---HcCCCEEEECHHH-HHHhhh
Confidence            34444567889994211111  111123444444   4589999999995 678866

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=94.86  E-value=0.025  Score=52.32  Aligned_cols=49  Identities=16%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             hccceeccCChhhH--HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          110 RRLENARLGGLGGA--QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       110 ~~d~livpGg~~~~--~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +.|.|++|||++..  ..+.++..+.+.|+++++.|++|-+-|.| -+.|.+
T Consensus       288 ~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGG-lMYL~~  338 (451)
T COG1797         288 DVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGG-LMYLGE  338 (451)
T ss_pred             CCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEeccc-ceeehh
Confidence            36779999998643  34667899999999999999999999999 466764

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=94.79  E-value=0.043  Score=52.50  Aligned_cols=52  Identities=13%  Similarity=0.130  Sum_probs=36.7

Q ss_pred             HhhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          107 KAARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       107 ~~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++...|.||+||+.. ...   ...+..+.+.|+++.+.++++.+||.|. .+|+++
T Consensus        41 ~l~~~D~lIlpG~gs-~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~-QlLa~~   95 (538)
T PLN02617         41 DILNADRLIFPGVGA-FGSAMDVLNNRGMAEALREYIQNDRPFLGICLGL-QLLFES   95 (538)
T ss_pred             hhccCCEEEECCCCC-HHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHH-HHHhhh
Confidence            444567799999642 221   1223346788888888999999999995 679864

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=94.60  E-value=0.057  Score=44.43  Aligned_cols=50  Identities=16%  Similarity=0.102  Sum_probs=34.8

Q ss_pred             hccceeccCChhhHHh--------------hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQA--------------FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~--------------~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|++|||......              ..++....++|+++.+.++++.+||.|. .+|+.+
T Consensus        53 ~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~-Q~l~~~  116 (189)
T cd01745          53 LLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGM-QLLNVA  116 (189)
T ss_pred             hCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchH-HHHHHH
Confidence            4677999999521110              1123345788999988999999999996 557754

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=94.30  E-value=0.091  Score=43.83  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             cchhHHHhhhccceeccCChh---hHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          101 MSREFEKAARRLENARLGGLG---GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       101 ~~~~~~~~~~~d~livpGg~~---~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      ...+.+++...|-||+||-..   .+..+ +.-.+.+.|++....++++.+||-|. .+|.+
T Consensus        30 vs~d~~~i~~AD~liLPGVGaf~~am~~L-~~~gl~~~i~~~~~~~kP~LGIClGM-QlLfe   89 (204)
T COG0118          30 VSRDPEEILKADKLILPGVGAFGAAMANL-RERGLIEAIKEAVESGKPFLGICLGM-QLLFE   89 (204)
T ss_pred             EecCHHHHhhCCEEEecCCCCHHHHHHHH-HhcchHHHHHHHHhcCCCEEEEeHhH-Hhhhh
Confidence            444555666678899999421   12222 33478999999999999999999996 55664

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=94.28  E-value=0.11  Score=43.19  Aligned_cols=52  Identities=15%  Similarity=0.102  Sum_probs=33.3

Q ss_pred             HhhhccceeccCChhhHHhhhc---CHHHHHHHHHH-HhCCCcEEEEcchhHHhhhhc
Q 026831          107 KAARRLENARLGGLGGAQAFAK---SEKLVNMLKKQ-KESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       107 ~~~~~d~livpGg~~~~~~~~~---~~~l~~~Lr~~-~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++...|.||+||+.. ..+...   +-.+...|++. .+.++++.+||.|. .+|+.+
T Consensus        34 ~l~~~d~lilPG~g~-~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~-Q~l~~~   89 (201)
T PRK13152         34 DLQKADKLLLPGVGS-FKEAMKNLKELGFIEALKEQVLVQKKPILGICLGM-QLFLER   89 (201)
T ss_pred             HHcCCCEEEECCCCc-hHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhH-HHHhhc
Confidence            344567788899852 222111   11234556554 47899999999995 679876

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=94.24  E-value=0.061  Score=44.06  Aligned_cols=44  Identities=18%  Similarity=0.105  Sum_probs=33.2

Q ss_pred             cceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          112 LENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       112 d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      |.||+|||....    .+.....++++..+.++++.+||-|. -+|+.+
T Consensus        43 ~glii~Gg~~~~----~~~~~~~~i~~~~~~~~PilGIC~G~-Qll~~~   86 (188)
T TIGR00888        43 KGIILSGGPSSV----YAENAPRADEKIFELGVPVLGICYGM-QLMAKQ   86 (188)
T ss_pred             CEEEECCCCCCc----CcCCchHHHHHHHhCCCCEEEECHHH-HHHHHh
Confidence            469999996322    22335678888889999999999995 678865

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=94.24  E-value=0.048  Score=50.81  Aligned_cols=49  Identities=20%  Similarity=0.200  Sum_probs=35.6

Q ss_pred             hhccceeccCChhhHH--hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          109 ARRLENARLGGLGGAQ--AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       109 ~~~d~livpGg~~~~~--~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      |+.|.|++|||.+...  .+..+... +.|+++.++|.+|.++|.| ..+|++
T Consensus       273 p~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG-~q~L~~  323 (433)
T PRK13896        273 PDCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGG-LMALAE  323 (433)
T ss_pred             CCCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehH-HHHhhc
Confidence            4457799999985322  12233334 8899999999999999999 466875

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=94.16  E-value=0.068  Score=44.41  Aligned_cols=51  Identities=16%  Similarity=0.081  Sum_probs=33.4

Q ss_pred             HHhhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          106 EKAARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       106 ~~~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +++.+.|.||+||+.. ...   ......+.+.|++  ..++++.+||.|. .+|++.
T Consensus        33 ~~l~~~D~lIlPG~g~-~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGm-QlL~~~   86 (192)
T PRK13142         33 KIIDQAETIILPGVGH-FKDAMSEIKRLNLNAILAK--NTDKKMIGICLGM-QLMYEH   86 (192)
T ss_pred             HHhccCCEEEECCCCC-HHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHH-HHHhhh
Confidence            4444567799999842 111   1122246777777  5689999999995 668753

>PRK05665 amidotransferase; Provisional

Probab=94.15  E-value=0.052  Score=46.62  Aligned_cols=50  Identities=14%  Similarity=0.009  Sum_probs=36.9

Q ss_pred             hccceeccCChhhHHh-hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQA-FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~-~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.+||.||..+..+ ..--.++.+|||+..++++++.+||-|. -+||++
T Consensus        57 ~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~Gh-Qlla~A  107 (240)
T PRK05665         57 KFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGH-QLLALL  107 (240)
T ss_pred             cCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHH-HHHHHH
Confidence            3566899998533221 1122578899999999999999999995 678865

>PRK09065 glutamine amidotransferase; Provisional

Probab=94.11  E-value=0.044  Score=46.88  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=36.1

Q ss_pred             hccceeccCChhhHHh-hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQA-FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~-~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|||.||..+..+ ...-.++.+||+++.+.+++|.+||-|. -+|+.+
T Consensus        54 ~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~-Qlla~a  104 (237)
T PRK09065         54 DFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH-QLLAHA  104 (237)
T ss_pred             hcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH-HHHHHH
Confidence            4566888888532211 1112567899999999999999999995 678865

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=94.07  E-value=0.041  Score=44.93  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=36.8

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.++|+||.....   ..+....+++++...++++.+||-|. -+||.+
T Consensus        42 ~~d~iii~Gg~~~~~---d~~~~~~~i~~~~~~~~PilGIC~G~-Q~la~~   88 (192)
T PF00117_consen   42 DYDGIIISGGPGSPY---DIEGLIELIREARERKIPILGICLGH-QILAHA   88 (192)
T ss_dssp             TSSEEEEECESSSTT---SHHHHHHHHHHHHHTTSEEEEETHHH-HHHHHH
T ss_pred             CCCEEEECCcCCccc---cccccccccccccccceEEEEEeehh-hhhHHh
Confidence            467799999864332   15788888999988999999999995 678854

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=93.92  E-value=0.19  Score=52.68  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=42.7

Q ss_pred             ccceeccCChhh----------HHhhhcCHHHHHHHHHHH-hCCCcEEEEcchhHHhhhhcCCCCCC
Q 026831          111 RLENARLGGLGG----------AQAFAKSEKLVNMLKKQK-ESNRPYGAICASPALVLEPHGLLKGK  166 (232)
Q Consensus       111 ~d~livpGg~~~----------~~~~~~~~~l~~~Lr~~~-~~g~~v~aic~G~~~lLA~aGLL~g~  166 (232)
                      .+.|++|||+..          ......++.+.+.++++. +.++.+.+||+| ..+|.+.|||.|-
T Consensus      1083 ~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNG-fQiL~~lgllPg~ 1148 (1307)
T PLN03206       1083 FRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNG-CQLMALLGWVPGP 1148 (1307)
T ss_pred             eeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHH-HHHHHHcCCCCCC
Confidence            345888998621          112345788999999998 559999999999 5889999999875

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=93.80  E-value=0.075  Score=50.13  Aligned_cols=51  Identities=12%  Similarity=0.062  Sum_probs=34.1

Q ss_pred             HHHhhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          105 FEKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       105 ~~~~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .+++...|.||+|||.. .....-...+.++|+++   |++|.+||.| ..+|++.
T Consensus        31 ~~~l~~~D~lILPGG~~-~~~~~l~~~l~~~i~~~---g~pvlGICgG-~QmLg~~   81 (476)
T PRK06278         31 IKEIKDLDGLIIPGGSL-VESGSLTDELKKEILNF---DGYIIGICSG-FQILSEK   81 (476)
T ss_pred             hHHhccCCEEEECCCch-hhcchHHHHHHHHHHHc---CCeEEEEcHH-HHhcccc
Confidence            34555678899999851 11100124566666665   9999999999 5778876

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=93.79  E-value=0.079  Score=44.43  Aligned_cols=53  Identities=17%  Similarity=0.001  Sum_probs=37.8

Q ss_pred             HHHhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          105 FEKAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       105 ~~~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      .+.+...|.|++|||.. ...  ......+.+.|++.+++|++++++|.|+ .++.+
T Consensus        75 ~~~l~~ad~I~l~GG~~-~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa-~i~~~  129 (212)
T cd03146          75 LDALLEADVIYVGGGNT-FNLLAQWREHGLDAILKAALERGVVYIGWSAGS-NCWFP  129 (212)
T ss_pred             HHHHhcCCEEEECCchH-HHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH-HhhCC
Confidence            34445678899999853 211  1233467788888889999999999995 56776

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=93.61  E-value=0.091  Score=44.97  Aligned_cols=51  Identities=16%  Similarity=0.054  Sum_probs=37.2

Q ss_pred             hhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          108 AARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       108 ~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +...|.|+|+||..- .-.......+.+.|++..++|+++++.|.|+ .+++.
T Consensus        77 l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA-ii~~~  128 (233)
T PRK05282         77 IENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA-NVAGP  128 (233)
T ss_pred             HhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH-Hhhhc
Confidence            456788999999631 1112345568888999999999999999995 55554

>PRK06490 glutamine amidotransferase; Provisional

Probab=93.44  E-value=0.064  Score=45.98  Aligned_cols=49  Identities=18%  Similarity=0.299  Sum_probs=35.0

Q ss_pred             ccceeccCChhhHHhh-hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAF-AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~-~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.++|.||..+..+. ..-..+.+||+++.+.++++.+||-|. -+|+++
T Consensus        53 ~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~-Qlla~a  102 (239)
T PRK06490         53 HAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGA-QMLARH  102 (239)
T ss_pred             cCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhH-HHHHHH
Confidence            4557888875322211 112457799999999999999999995 779876

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=93.22  E-value=0.094  Score=44.15  Aligned_cols=47  Identities=11%  Similarity=0.165  Sum_probs=35.5

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|||.||..++.   ++....+|++++.+++++|.+||-|. -+|+.+
T Consensus        46 ~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~PiLGIC~G~-Qlla~a   92 (214)
T PRK07765         46 QFDGVLLSPGPGTPE---RAGASIDMVRACAAAGTPLLGVCLGH-QAIGVA   92 (214)
T ss_pred             CCCEEEECCCCCChh---hcchHHHHHHHHHhCCCCEEEEccCH-HHHHHH
Confidence            466688888854332   34456799999999999999999995 668754

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=93.02  E-value=0.23  Score=45.22  Aligned_cols=47  Identities=17%  Similarity=0.176  Sum_probs=35.7

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.||++||.+++.   +++...++++++.+.++++.+||-|. -+|+.+
T Consensus       218 ~~DGIvLSgGPgdp~---~~~~~~~~i~~~~~~~~PilGIClG~-QlLa~a  264 (360)
T PRK12564        218 NPDGVFLSNGPGDPA---ALDYAIEMIRELLEKKIPIFGICLGH-QLLALA  264 (360)
T ss_pred             CCCEEEEeCCCCChH---HHHHHHHHHHHHHHcCCeEEEECHHH-HHHHHH
Confidence            356799998854333   34677889999988899999999996 567754

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=92.79  E-value=0.16  Score=41.67  Aligned_cols=46  Identities=13%  Similarity=0.093  Sum_probs=32.5

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|||.||.+...   ..+.+.++|++ .+.++++.+||-|. -+|+.+
T Consensus        43 ~~d~iIi~gGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~-Qlla~~   88 (190)
T PRK06895         43 NFSHILISPGPDVPR---AYPQLFAMLER-YHQHKSILGVCLGH-QTLCEF   88 (190)
T ss_pred             cCCEEEECCCCCChH---HhhHHHHHHHH-hcCCCCEEEEcHHH-HHHHHH
Confidence            456677776643222   23567888986 67899999999995 678865

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=92.70  E-value=0.31  Score=42.13  Aligned_cols=50  Identities=16%  Similarity=0.046  Sum_probs=36.2

Q ss_pred             hccceeccCChhhHH-------------hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQ-------------AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~-------------~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|-|+++||..+..             +..+|....++|+.+.+++++|.+||-|. -+|+.+
T Consensus        61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~-Qllnva  123 (254)
T PRK11366         61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGL-QELVVA  123 (254)
T ss_pred             hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhH-HHHHHH
Confidence            367799999832221             11234566799999999999999999995 667755

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=92.50  E-value=0.25  Score=40.16  Aligned_cols=54  Identities=17%  Similarity=0.062  Sum_probs=38.5

Q ss_pred             hHHHhhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCC-CcEEEEcchhHHhhh
Q 026831          104 EFEKAARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESN-RPYGAICASPALVLE  158 (232)
Q Consensus       104 ~~~~~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g-~~v~aic~G~~~lLA  158 (232)
                      +-.++..+|.|+||||... +....+...+.+-|-.+..++ +++.+.|.|. ++|.
T Consensus        50 T~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGm-I~LS  105 (226)
T KOG3210|consen   50 TKNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGM-IYLS  105 (226)
T ss_pred             CHHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhh-hhhh
Confidence            4456666789999999642 233344455888888887776 9999999995 4455

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=92.16  E-value=0.3  Score=39.73  Aligned_cols=46  Identities=9%  Similarity=0.087  Sum_probs=29.4

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.||+.||.....   ++. ....+++...+++++.+||-|. -+|+.+
T Consensus        42 ~~dgvil~gG~~~~~---~~~-~~~~i~~~~~~~~PvlGIC~G~-Qlla~~   87 (184)
T cd01743          42 NPDAIVISPGPGHPE---DAG-ISLEIIRALAGKVPILGVCLGH-QAIAEA   87 (184)
T ss_pred             CCCEEEECCCCCCcc---cch-hHHHHHHHHhcCCCEEEECHhH-HHHHHH
Confidence            456677766643221   222 4455555566789999999995 678865

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=91.51  E-value=0.57  Score=49.11  Aligned_cols=53  Identities=11%  Similarity=-0.007  Sum_probs=40.8

Q ss_pred             cceeccCChhh----------HHhhhcCHHHHHHHHHHH-hCCCcEEEEcc-hhHHhhhhcCCCCC
Q 026831          112 LENARLGGLGG----------AQAFAKSEKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLLKG  165 (232)
Q Consensus       112 d~livpGg~~~----------~~~~~~~~~l~~~Lr~~~-~~g~~v~aic~-G~~~lLA~aGLL~g  165 (232)
                      +.|++|||...          ......++.+.+.++++. +.++.+.+||+ | ..+|.+.|+|..
T Consensus       975 ~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G-~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739       975 SGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELG-CQLLLALNIVGY 1039 (1202)
T ss_pred             EEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHH-HHHHHHcCCCcC
Confidence            34777887631          112345889999999998 56999999999 9 688999999853

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK00758 GMP synthase subunit A; Validated

Probab=91.50  E-value=0.23  Score=40.45  Aligned_cols=46  Identities=17%  Similarity=0.172  Sum_probs=31.5

Q ss_pred             Hhhhc-cceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          107 KAARR-LENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       107 ~~~~~-d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++.+. |.|+++||. +..   ....+.+||+   +.++++.+||-|. .+|+.+
T Consensus        37 ~l~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~PilGIC~G~-Q~L~~a   83 (184)
T PRK00758         37 EIKAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVPILGICLGH-QLIAKA   83 (184)
T ss_pred             HHhhcCCEEEECCCC-Chh---hccccHHHHH---hCCCCEEEEeHHH-HHHHHh
Confidence            33344 779999985 332   2234566776   4589999999995 678866

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=91.03  E-value=0.31  Score=44.43  Aligned_cols=48  Identities=15%  Similarity=0.095  Sum_probs=35.3

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      ..+.||+|||..-.....-+..-.+.||++.++|....+||.|+ . +|.
T Consensus        49 ~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGa-Y-~as   96 (367)
T PF09825_consen   49 KCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGA-Y-YAS   96 (367)
T ss_pred             CCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcch-h-hhc
Confidence            34568999997322222236777889999999999999999995 5 563

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK07567 glutamine amidotransferase; Provisional

Probab=91.00  E-value=0.34  Score=41.57  Aligned_cols=49  Identities=18%  Similarity=0.116  Sum_probs=31.4

Q ss_pred             ccceeccCChhhHHhh--hcC-------HHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAF--AKS-------EKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~--~~~-------~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.+||.||..+..+.  ...       ..+.++++.+...++++.+||-|. .+|+.+
T Consensus        52 ~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~-Qlla~a  109 (242)
T PRK07567         52 YSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV-GTLGHH  109 (242)
T ss_pred             ccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH-HHHHHH
Confidence            4668888885322211  011       223445555568999999999995 678865

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=90.93  E-value=0.22  Score=41.56  Aligned_cols=47  Identities=15%  Similarity=0.113  Sum_probs=35.5

Q ss_pred             cceeccCChhhHHhhhc--CHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          112 LENARLGGLGGAQAFAK--SEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       112 d~livpGg~~~~~~~~~--~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      |.+||.||..+.. ...  .++..+||++....+++|.+||.|. -+||++
T Consensus        47 ~giIlsGgp~sv~-~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~-Ql~A~~   95 (198)
T COG0518          47 DGIIISGGPMSVY-DEDPWLPREKDLIKDAGVPGKPVLGICLGH-QLLAKA   95 (198)
T ss_pred             CEEEEcCCCCCCc-cccccchhHHHHHHHhCCCCCCEEEEChhH-HHHHHH
Confidence            5589999853221 223  5788999999998999999999995 668853

>PRK05670 anthranilate synthase component II; Provisional

Probab=90.77  E-value=0.52  Score=38.63  Aligned_cols=45  Identities=9%  Similarity=0.122  Sum_probs=30.7

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.||+.||.+++.+   ......+|++. ..++++.+||-|. .+|+.+
T Consensus        44 ~dglIlsgGpg~~~d---~~~~~~~l~~~-~~~~PvLGIClG~-Qlla~a   88 (189)
T PRK05670         44 PDAIVLSPGPGTPAE---AGISLELIREF-AGKVPILGVCLGH-QAIGEA   88 (189)
T ss_pred             CCEEEEcCCCCChHH---cchHHHHHHHh-cCCCCEEEECHHH-HHHHHH
Confidence            466888777544432   23456677764 5679999999995 678865

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=90.67  E-value=0.29  Score=40.22  Aligned_cols=45  Identities=9%  Similarity=0.082  Sum_probs=31.6

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +|.|||-||.+++.   ++....++++++ .++++|.+||-|. .+|+.+
T Consensus        44 ~d~iilsgGpg~p~---~~~~~~~~i~~~-~~~~PvLGIC~G~-Qll~~~   88 (188)
T TIGR00566        44 PLLIVISPGPCTPN---EAGISLEAIRHF-AGKLPILGVCLGH-QAMGQA   88 (188)
T ss_pred             CCEEEEcCCCCChh---hcchhHHHHHHh-ccCCCEEEECHHH-HHHHHH
Confidence            45577777754343   233447888877 6789999999995 668855

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=90.63  E-value=0.36  Score=41.30  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=33.2

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE  158 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA  158 (232)
                      ..|.|++|||.+ ..   ..+....+++...+.++++.+||.|. -+|+
T Consensus        55 ~~dgivl~GG~~-~~---~~~~~~~~i~~~~~~~~PvlGIClG~-Q~l~   98 (235)
T cd01746          55 GADGILVPGGFG-IR---GVEGKILAIKYARENNIPFLGICLGM-QLAV   98 (235)
T ss_pred             cCCEEEECCCCC-Cc---chhhHHHHHHHHHHCCceEEEEEhHH-HHHH
Confidence            456699999863 22   23466788999889999999999995 4454

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=90.30  E-value=0.64  Score=42.32  Aligned_cols=45  Identities=20%  Similarity=0.180  Sum_probs=34.1

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +|.||++||.+++.   ..+..+++++++.+ ++|+.+||-|. -+|+.+
T Consensus       215 pDGIiLSgGPgdp~---~~~~~i~~i~~~~~-~~PILGIClG~-QlLa~a  259 (358)
T TIGR01368       215 PDGIFLSNGPGDPA---AVEPAIETIRKLLE-KIPIFGICLGH-QLLALA  259 (358)
T ss_pred             CCEEEECCCCCCHH---HHHHHHHHHHHHHc-CCCEEEECHHH-HHHHHH
Confidence            37799999854332   34667888888887 89999999995 668754

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK06186 hypothetical protein; Validated

Probab=89.70  E-value=0.42  Score=40.79  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=33.1

Q ss_pred             hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchh
Q 026831          109 ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASP  153 (232)
Q Consensus       109 ~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~  153 (232)
                      ...|-++||||.+ .   +.-+--+..++.+..+++|+.+||-|.
T Consensus        52 ~~~dgilvpgGfg-~---rg~~Gki~ai~~Are~~iP~LGIClGm   92 (229)
T PRK06186         52 AGFDGIWCVPGSP-Y---RNDDGALTAIRFARENGIPFLGTCGGF   92 (229)
T ss_pred             hhCCeeEeCCCCC-c---ccHhHHHHHHHHHHHcCCCeEeechhh
Confidence            3457799999985 2   345677788999999999999999995

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=89.45  E-value=0.71  Score=40.36  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=30.6

Q ss_pred             hHHH-hhhccceeccCChhhHHh---hhcCHHHHHHHHHHHhCC--CcEEEEcchhHHhhhh
Q 026831          104 EFEK-AARRLENARLGGLGGAQA---FAKSEKLVNMLKKQKESN--RPYGAICASPALVLEP  159 (232)
Q Consensus       104 ~~~~-~~~~d~livpGg~~~~~~---~~~~~~l~~~Lr~~~~~g--~~v~aic~G~~~lLA~  159 (232)
                      .+++ ....|-|++|||..+...   ......+.++..+..++|  .+|.++|-|. .+|+.
T Consensus        47 ~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~-QlL~~  107 (273)
T cd01747          47 YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGF-ELLTY  107 (273)
T ss_pred             HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHH-HHHHH
Confidence            3444 234566999998422211   111123334444444444  7999999995 56775

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=89.15  E-value=0.8  Score=41.63  Aligned_cols=46  Identities=17%  Similarity=0.165  Sum_probs=34.0

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|-||++||.+++.   ......++++++.++ +|+.+||-|. -+|+.+
T Consensus       208 ~~DGIiLsgGPgdp~---~~~~~~~~i~~~~~~-~PvlGIClG~-QlLa~a  253 (354)
T PRK12838        208 NPDGIVLSNGPGDPK---ELQPYLPEIKKLISS-YPILGICLGH-QLIALA  253 (354)
T ss_pred             CCCEEEEcCCCCChH---HhHHHHHHHHHHhcC-CCEEEECHHH-HHHHHH
Confidence            357799999864332   345677888888776 9999999995 668754

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=88.84  E-value=0.36  Score=38.96  Aligned_cols=46  Identities=13%  Similarity=0.091  Sum_probs=29.1

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.||+|||.....+ ...+.+.   +...+.++++.+||.|. .+|+.+
T Consensus        41 ~~dgvIl~Gg~~~~~~-~~~~~~~---~~~~~~~~PilGIC~G~-Qll~~~   86 (181)
T cd01742          41 NPKGIILSGGPSSVYE-EDAPRVD---PEIFELGVPVLGICYGM-QLIAKA   86 (181)
T ss_pred             CCCEEEECCCcccccc-cccchhh---HHHHhcCCCEEEEcHHH-HHHHHh
Confidence            3566999998532211 1122333   44445699999999995 668874

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=88.73  E-value=1.1  Score=38.36  Aligned_cols=48  Identities=15%  Similarity=0.127  Sum_probs=36.3

Q ss_pred             ccceeccCChhhHH---------------hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQ---------------AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~---------------~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      -|-|+++||. +.+               +..+|.--+..||++.++++||.+||-|. -+|.-+
T Consensus        61 iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~-QllNVa  123 (243)
T COG2071          61 IDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGL-QLLNVA  123 (243)
T ss_pred             ccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccch-HHHHHH
Confidence            5669999993 211               12346778899999999999999999995 667643

>PRK05380 pyrG CTP synthetase; Validated

Probab=87.35  E-value=0.75  Score=43.91  Aligned_cols=46  Identities=20%  Similarity=0.237  Sum_probs=34.6

Q ss_pred             hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831          108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE  158 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA  158 (232)
                      ....|-|++|||.+ ..   ..+..+.+++.+.++++|+.+||-|. -+++
T Consensus       341 L~~~DGIIlpGGfG-~~---~~~g~i~~i~~a~e~~iPiLGIClGm-Qll~  386 (533)
T PRK05380        341 LKGVDGILVPGGFG-ER---GIEGKILAIRYARENNIPFLGICLGM-QLAV  386 (533)
T ss_pred             hhcCCEEEecCCCC-cc---ccccHHHHHHHHHHCCCcEEEEchHH-HHHH
Confidence            33467799999974 22   24456788888889999999999995 4455

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=86.23  E-value=1.6  Score=40.13  Aligned_cols=47  Identities=19%  Similarity=0.133  Sum_probs=33.3

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.||+.||.+++.   .....++.++++.+.+.++.+||-|- -+|+.+
T Consensus       233 ~~dgIilSgGPg~p~---~~~~~i~~i~~~~~~~~PilGIClGh-QlLa~a  279 (382)
T CHL00197        233 QPDGILLSNGPGDPS---AIHYGIKTVKKLLKYNIPIFGICMGH-QILSLA  279 (382)
T ss_pred             CCCEEEEcCCCCChh---HHHHHHHHHHHHHhCCCCEEEEcHHH-HHHHHH
Confidence            356688888854332   23456677777777789999999995 667754

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.98  E-value=1  Score=35.55  Aligned_cols=51  Identities=14%  Similarity=-0.004  Sum_probs=35.2

Q ss_pred             hhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          108 AARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       108 ~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +...|.|++-||... ......+..+.+.|++..++|+++++...|+ .++..
T Consensus        33 i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA-~i~~~   84 (154)
T PF03575_consen   33 IREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGA-MILGP   84 (154)
T ss_dssp             HHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHH-HCTSS
T ss_pred             HHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHH-hhccC
Confidence            456788999999631 1122345678999999999999999999995 55553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.41  E-value=2.3  Score=35.75  Aligned_cols=55  Identities=15%  Similarity=0.160  Sum_probs=30.7

Q ss_pred             hHHHh-hhccceeccCChhhHH---------------hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          104 EFEKA-ARRLENARLGGLGGAQ---------------AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       104 ~~~~~-~~~d~livpGg~~~~~---------------~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      .++.. ...|-|++|||..+..               +..+|.--..+++.+.+++++|.+||-|. -+|.-
T Consensus        51 ~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~-Q~lnv  121 (217)
T PF07722_consen   51 ELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGM-QLLNV  121 (217)
T ss_dssp             HHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHH-HHHHH
T ss_pred             HHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHH-HHHHH
Confidence            34443 3467799999962220               11234445567788888999999999995 55653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=84.31  E-value=2.9  Score=35.08  Aligned_cols=50  Identities=16%  Similarity=0.051  Sum_probs=36.7

Q ss_pred             hhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831          108 AARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE  158 (232)
Q Consensus       108 ~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA  158 (232)
                      +...|.|++.||... ..+......+.+.|++.+++|.++++...|+ .++.
T Consensus        81 l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA-~i~~  131 (217)
T cd03145          81 LRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGA-AVMS  131 (217)
T ss_pred             HHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHH-Hhhh
Confidence            445788999999631 1122345678889999999999999999996 4454

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>PRK13566 anthranilate synthase; Provisional

Probab=84.24  E-value=1.9  Score=42.90  Aligned_cols=45  Identities=11%  Similarity=0.014  Sum_probs=32.7

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.||+.||.+.+.    +..+..+|+++.+++++|.+||-|. -+|+.+
T Consensus       570 ~DgVVLsgGpgsp~----d~~~~~lI~~a~~~~iPILGIClG~-QlLa~a  614 (720)
T PRK13566        570 PDLVVLSPGPGRPS----DFDCKATIDAALARNLPIFGVCLGL-QAIVEA  614 (720)
T ss_pred             CCEEEECCCCCChh----hCCcHHHHHHHHHCCCcEEEEehhH-HHHHHH
Confidence            45566655543332    3357899999999999999999995 678865

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=84.06  E-value=1.9  Score=35.89  Aligned_cols=51  Identities=14%  Similarity=0.089  Sum_probs=35.2

Q ss_pred             HhhhccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          107 KAARRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       107 ~~~~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      .+...|.|+++||.. ..-  ......+.+.|++.+++|.++++.|.|+ .++.+
T Consensus        77 ~l~~ad~I~~~GG~~-~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA-~~~~~  129 (210)
T cd03129          77 RLLEADGIFVGGGNQ-LRLLSVLRETPLLDAILKRVARGVVIGGTSAGA-AVMGE  129 (210)
T ss_pred             HHhhCCEEEEcCCcH-HHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHH-HHhhh
Confidence            345678899999963 221  1223346666777777999999999996 56776

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>CHL00101 trpG anthranilate synthase component 2

Probab=84.02  E-value=0.84  Score=37.50  Aligned_cols=45  Identities=11%  Similarity=-0.008  Sum_probs=29.1

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.|||-||.+.+.+   + .....+.+..+.++++.+||-|. -+||.+
T Consensus        44 ~dgiiisgGpg~~~~---~-~~~~~i~~~~~~~~PiLGIClG~-Qlla~~   88 (190)
T CHL00101         44 IRHIIISPGPGHPRD---S-GISLDVISSYAPYIPILGVCLGH-QSIGYL   88 (190)
T ss_pred             CCEEEECCCCCChHH---C-cchHHHHHHhcCCCcEEEEchhH-HHHHHH
Confidence            566777777543332   2 22333444567899999999995 678865

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=83.93  E-value=0.98  Score=37.07  Aligned_cols=45  Identities=7%  Similarity=0.104  Sum_probs=30.8

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.||+-||-+.+.   +......+++. ...++++.+||-|. -+|+.+
T Consensus        44 ~d~iils~GPg~p~---~~~~~~~~~~~-~~~~~PiLGIClG~-Q~la~a   88 (187)
T PRK08007         44 PQKIVISPGPCTPD---EAGISLDVIRH-YAGRLPILGVCLGH-QAMAQA   88 (187)
T ss_pred             CCEEEEcCCCCChH---HCCccHHHHHH-hcCCCCEEEECHHH-HHHHHH
Confidence            45677777754443   23445666766 45789999999995 678865

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=83.66  E-value=2.2  Score=40.22  Aligned_cols=49  Identities=8%  Similarity=0.003  Sum_probs=31.6

Q ss_pred             hccceeccCChhhHHhhh--cCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          110 RRLENARLGGLGGAQAFA--KSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~--~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      ++|.+++||......++.  +..-+-.-|+++.+++.+|.+||.| .-+|.+
T Consensus       290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG-~QmLG~  340 (486)
T COG1492         290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGG-YQMLGR  340 (486)
T ss_pred             CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcch-HHhhhh
Confidence            367789999864333321  2222333555666679999999999 566874

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=83.11  E-value=1.2  Score=36.54  Aligned_cols=45  Identities=7%  Similarity=0.044  Sum_probs=29.9

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +|.+++-||..++.   ++.....+++. .+.+.++.+||-|. .+|+.+
T Consensus        44 ~~~iilsgGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~-Qlia~a   88 (193)
T PRK08857         44 PTHLVISPGPCTPN---EAGISLQAIEH-FAGKLPILGVCLGH-QAIAQV   88 (193)
T ss_pred             CCEEEEeCCCCChH---HCcchHHHHHH-hcCCCCEEEEcHHH-HHHHHH
Confidence            45566666643333   23344667765 46799999999995 668865

>PLN02347 GMP synthetase

Probab=82.29  E-value=2.3  Score=40.89  Aligned_cols=48  Identities=13%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             ccceeccCChhhHHhhhcCHHHH-HHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLV-NMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~-~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.||++||..... ....+.+. .+++.+.+.+.+|.+||-|. -+|+.+
T Consensus        54 ~dgIILsGGP~sv~-~~~~p~~~~~i~~~~~~~~iPILGIClG~-QlLa~a  102 (536)
T PLN02347         54 PRVVILSGGPHSVH-VEGAPTVPEGFFDYCRERGVPVLGICYGM-QLIVQK  102 (536)
T ss_pred             CCEEEECCCCCccc-ccCCchhhHHHHHHHHhcCCcEEEECHHH-HHHHHH
Confidence            56699999853222 11222222 23333445789999999995 678865

>PRK05637 anthranilate synthase component II; Provisional

Probab=81.93  E-value=3.1  Score=34.80  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=29.1

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.||+-||-+++.+   .....++++... .+++|.+||-|. -+|+.+
T Consensus        45 ~~~iIlsgGPg~~~d---~~~~~~li~~~~-~~~PiLGIClG~-Qlla~a   89 (208)
T PRK05637         45 PDLICLSPGPGHPRD---AGNMMALIDRTL-GQIPLLGICLGF-QALLEH   89 (208)
T ss_pred             CCEEEEeCCCCCHHH---hhHHHHHHHHHh-CCCCEEEEcHHH-HHHHHH
Confidence            455777666543432   233456665543 579999999995 668865

>PLN02327 CTP synthase

Probab=81.67  E-value=1.9  Score=41.37  Aligned_cols=46  Identities=22%  Similarity=0.239  Sum_probs=32.3

Q ss_pred             hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhh
Q 026831          108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE  158 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA  158 (232)
                      +...|.|++|||.+. .   ..+..+..++.+..+++++.+||-|. -+++
T Consensus       360 L~~~DGIvvpGGfG~-~---~~~G~i~ai~~are~~iP~LGIClGm-Ql~v  405 (557)
T PLN02327        360 LKGADGILVPGGFGD-R---GVEGKILAAKYARENKVPYLGICLGM-QIAV  405 (557)
T ss_pred             hccCCEEEeCCCCCC-c---ccccHHHHHHHHHHcCCCEEEEcHHH-HHHH
Confidence            334677999999742 2   22344667777778999999999995 4344

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=81.13  E-value=1.9  Score=35.24  Aligned_cols=45  Identities=9%  Similarity=0.071  Sum_probs=30.2

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +|.||+-||.+++.   ++.....+++. .++++++.+||-|. -+|+.+
T Consensus        44 ~~~iilsgGP~~~~---~~~~~~~~i~~-~~~~~PiLGIC~G~-Qlla~~   88 (191)
T PRK06774         44 PSHLVISPGPCTPN---EAGISLAVIRH-FADKLPILGVCLGH-QALGQA   88 (191)
T ss_pred             CCeEEEcCCCCChH---hCCCchHHHHH-hcCCCCEEEECHHH-HHHHHH
Confidence            45677777754343   23335566665 46789999999995 678876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		3e-20
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		3e-18
1j42_A	189	Crystal Structure Of Human Dj-1 Length = 189		7e-13
3cy6_A	197	Crystal Structure Of E18q Dj-1 Length = 197		7e-13
3sf8_B	191	Structural Insights Into Thiol Stabilization Of Dj-		7e-13
2rk4_A	197	Structure Of M26i Dj-1 Length = 197		7e-13
1ucf_A	189	The Crystal Structure Of Dj-1, A Protein Related To		7e-13
3b36_A	192	Structure Of M26l Dj-1 Length = 192		7e-13
3cza_A	197	Crystal Structure Of E18d Dj-1 Length = 197		8e-13
2r1u_A	187	Dj-1 Activation By Catechol Quinone Modification Le		8e-13
3cz9_A	197	Crystal Structure Of E18l Dj-1 Length = 197		8e-13
1pe0_A	197	Crystal Structure Of The K130r Mutant Of Human Dj-1		8e-13
1pdv_A	197	Crystal Structure Of Human Dj-1, P 31 2 1 Space Gro		1e-12
3bwe_A	189	Crystal Structure Of Aggregated Form Of Dj1 Length		1e-12
3b38_A	192	Structure Of A104v Dj-1 Length = 192		2e-12
2rk3_A	197	Structure Of A104t Dj-1 Length = 197		2e-12
3f71_A	196	Crystal Structure Of E18d Dj-1 With Oxidized C106 L		8e-12
3ezg_A	196	Crystal Structure Of E18q Dj-1 With Oxidized C106 L		8e-12
2r1t_B	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		1e-11
2r1t_A	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		1e-11
3b3a_A	192	Structure Of E163kR145E DJ-1 Length = 192		1e-11
3cyf_A	197	Crystal Structure Of E18n Dj-1 Length = 197		2e-11
3sf8_A	191	Structural Insights Into Thiol Stabilization Of Dj-		2e-11
1soa_A	189	Human Dj-1 With Sulfinic Acid Length = 189		2e-11
2rk6_A	192	Structure Of E163k Dj-1 Length = 192		5e-11
3ot1_A	208	Crystal Structure Of Vc2308 Protein Length = 208		5e-10
3ot1_B	208	Crystal Structure Of Vc2308 Protein Length = 208		1e-08
3mgk_A	211	Crystal Structure Of Probable ProteaseAMIDASE FROM		3e-07
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		2e-06
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		4e-06
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		1e-05
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		1e-05
4ge0_A	194	Schizosaccharomyces Pombe Dj-1 T114p Mutant Length		2e-05
3l18_A	168	Ton1285, An Intracellular Protease From Thermococcu		3e-05
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		3e-05
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		8e-05
4gdh_A	194	Schizosaccharomyces Pombe Dj-1 Length = 194		1e-04
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		1e-04
4ge3_A	194	Schizosaccharomyces Pombe Dj-1 T114v Mutant Length		1e-04

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 3/115 (2%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGG+ A  +S  + ++L+ Q+       AICA+P  VL  HG+  GK  T++P+M  +
Sbjct: 75  GGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQ 133
Query: 178 L-SDQSEIENRVVV-DGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
           L ++ S ++++ VV DGNLITSRGPGT+ EFAL I E+  G+ K  E+AK LL++
Sbjct: 134 LVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVA 188

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +      T FP + +K
Sbjct: 74  GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDK 133
Query: 178 LSDQSEIENRVVVDG--NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
           +  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+A  L+++
Sbjct: 134 IPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMA 188

>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1 Length = 189

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGCGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1 Length = 197

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|2RK4|A Chain A, Structure Of M26i Dj-1 Length = 197

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson's Disease Length = 189

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3B36|A Chain A, Structure Of M26l Dj-1 Length = 192

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 77  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 135
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 190

>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1 Length = 197

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification Length = 187

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 73  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 131
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186

>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1 Length = 197

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1 Length = 197

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL-AHEIGFGSKVTTHPLARDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group Length = 197

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
             +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 XXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1 Length = 189

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
             +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 XXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3B38|A Chain A, Structure Of A104v Dj-1 Length = 192

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+        ICA P  +L  H +  G K T  P   +K
Sbjct: 77  GGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLA-HEIGFGSKVTTHPLAKDK 135
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 190

>pdb|2RK3|A Chain A, Structure Of A104t Dj-1 Length = 197

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+        ICA P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G K T  P   +K
Sbjct: 73  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLA-HEIGFGSKVTTHPLAKDK 131
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186

>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G K T  P   +K
Sbjct: 73  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLA-HEIGFGSKVTTHPLAKDK 131
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186

>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1 Length = 192

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 77  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 135
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       EN V  DG ++TSRGPGTS +FALAIVE   G+  A ++   L+L
Sbjct: 136 MMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVL 190

>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1 Length = 197

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL-AHEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid Length = 189

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGSKVTTHPLAKDK 132
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>pdb|2RK6|A Chain A, Structure Of E163k Dj-1 Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AI A P  +L  H +  G K T  P   +K
Sbjct: 77  GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLA-HEIGFGSKVTTHPLAKDK 135
Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS +FALAIVE   G+  A ++   L+L
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVL 190

>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+GGAQAFA S  L+ ++    +  +   AICA+PALV        G + T  P   + 
Sbjct: 79  GGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXTCHPNFFDH 138
Query: 178 LSDQSEIENRVV--VDGNLITSRGPGTSMEF 206
           +  +     RV      +L+TS+GPGT++EF
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEF 169

>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+GGAQAFA S  L+ ++    +  +   AI A+PALV        G + T  P   + 
Sbjct: 79  GGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXTCHPNFFDH 138
Query: 178 LSDQSEIENRVV--VDGNLITSRGPGTSMEF 206
           +  +     RV      +L+TS+GPGT++EF
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEF 169

>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM Clostridium Acetobutylicum Atcc 824 Length = 211

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 119 GLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL 178
           G  G +     +  +N +    + ++   ++C   AL L   G+L GK+AT        +
Sbjct: 73  GGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSAL-LSKAGILNGKRATTNKRSFKWV 131
Query: 179 SDQSEI-----ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAK 225
           ++Q+E      E R V DGN+ TS G    ++  L  +E   G+ KALE+++
Sbjct: 132 TEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISR 183

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 129 SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS--EIEN 186
           +EK V++ +K     +P  +IC  P +++   G+L+G+K T++P + +   +     ++ 
Sbjct: 79  NEKAVSIARKXFSEGKPVASICHGPQILISA-GVLRGRKGTSYPGIKDDXINAGVEWVDA 137
Query: 187 RVVVDGNLITSRGP 200
            VVVDGN ++SR P
Sbjct: 138 EVVVDGNWVSSRVP 151

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 133 VNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSE--IENRVVV 190
           V  +++  E  +   A+   P +++E   LL+GK+AT F A+     +     ++  +VV
Sbjct: 95  VRFVQEAXEQGKLVAAVXHGPQVLIEGD-LLRGKQATGFIAISKDXXNAGADYLDEALVV 153
Query: 191 DGNLITSRGPGTSMEFALAIVEK--FFGRNKAL 221
           DGNLITSR PG    F  AI+ +  + G++ AL
Sbjct: 154 DGNLITSREPGDLAIFTTAILSRLGYGGKDAAL 186

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
           G  A  +  + +  +++Q    R   ++C S +LVL   GLL+GK+AT   A    L+  
Sbjct: 76  GVGALMEDPQALAFIRQQAARARYVTSVC-SGSLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
             I    RVV DGNL+T  G    ++FAL +  + F    A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
           G  A  +  + +  +++Q    R   ++C   +LVL   GLL+GK+AT   A    L+  
Sbjct: 76  GVGALMEDPQALAFIRQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
             I    RVV DGNL+T  G    ++FAL +  + F    A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175

>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant Length = 194

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
Query: 97  SEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKK-QKESNRPYGAICASPAL 155
           S D+ +++++ A         GG  GA+  + +  +  ++K+  K+ N+  G I A P L
Sbjct: 66  SADDFAKQYDIAIIP------GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGP-L 118
Query: 156 VLEPHGLLKGKKATAFPAMCNKLSDQSE--IENRVVVDGNLITSRGPGTSMEFALAIVEK 213
             +  GL   K+ T  P++  +L +     ++  VV++ NLITS+GPGT+M F L ++E+
Sbjct: 119 TAKTSGL-PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQ 177
Query: 214 FFGRNK 219
              ++K
Sbjct: 178 VASKDK 183

>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus Onnurineus Na1 Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 129 SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKL--SDQSEIEN 186
           +EK V + ++  E ++P  +IC  P +++    +LKG++ T+   + + +  +    I+ 
Sbjct: 81  NEKAVMITRRMFEDDKPVASICHGPQILISAK-VLKGRRGTSTITIRDDVINAGAEWIDA 139
Query: 187 RVVVDGNLITSRGPG 201
            VVVDGN ++SR PG
Sbjct: 140 EVVVDGNWVSSRHPG 154

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
           G  A  +  + +  +++Q    R Y    A+ +LVL   GLL+GK+AT   A    L+  
Sbjct: 76  GVGALMEDPQALAFIRQQAARAR-YVTSVATGSLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
             I    RVV DGNL+T  G    ++FAL +  + F    A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
           G  A  +  + +  +++Q    R Y    ++ +LVL   GLL+GK+AT   A    L+  
Sbjct: 76  GVGALMEDPQALAFIRQQAARAR-YVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
             I    RVV DGNL+T  G    ++FAL +  + F    A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175

>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1 Length = 194

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 97  SEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKK-QKESNRPYGAICASPAL 155
           S D+ +++++ A         GG  GA+  + +  +  ++K+  K+ N+  G I A   L
Sbjct: 66  SADDFAKQYDIAIIP------GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAG-TL 118
Query: 156 VLEPHGLLKGKKATAFPAMCNKLSDQSE--IENRVVVDGNLITSRGPGTSMEFALAIVEK 213
             +  GL   K+ T  P++  +L +     ++  VV++ NLITS+GPGT+M F L ++E+
Sbjct: 119 TAKTSGL-PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQ 177
Query: 214 FFGRNK 219
              ++K
Sbjct: 178 VASKDK 183

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 122 GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ 181
           G  A  +  + +  +++Q    R Y     + +LVL   GLL+GK+AT   A    L+  
Sbjct: 76  GVGALMEDPQALAFIRQQAARAR-YVTSVXTGSLVLGAAGLLQGKRATTHWAYHELLAPL 134
Query: 182 SEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
             I    RVV DGNL+T  G    ++FAL +  + F    A
Sbjct: 135 GAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATA 175

>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant Length = 194

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 97  SEDNMSREFEKAARRLENARLGGLGGAQAFAKSEKLVNMLKK-QKESNRPYGAICASPAL 155
           S D+ +++++ A         GG  GA+  + +  +  ++K+  K+ N+  G I A   L
Sbjct: 66  SADDFAKQYDIAIIP------GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAG-VL 118
Query: 156 VLEPHGLLKGKKATAFPAMCNKLSDQSE--IENRVVVDGNLITSRGPGTSMEFALAIVEK 213
             +  GL   K+ T  P++  +L +     ++  VV++ NLITS+GPGT+M F L ++E+
Sbjct: 119 TAKTSGL-PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQ 177
Query: 214 FFGRNK 219
              ++K
Sbjct: 178 VASKDK 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	4e-50
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	6e-49
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	3e-48
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	7e-48
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	5e-44
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	1e-36
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	7e-36
2fex_A	188	Conserved hypothetical protein; structural genomic	9e-34
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	8e-33
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	4e-30
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	3e-29
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	2e-27
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	1e-24
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	8e-21
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	2e-23
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	5e-20
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	9e-15
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	6e-13
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	9e-13
1u9c_A	224	APC35852; structural genomics, protein structure i	1e-10
3gra_A	202	Transcriptional regulator, ARAC family; transcript	1e-10
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	5e-10
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	7e-08
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	5e-07
3er6_A	209	Putative transcriptional regulator protein; struct	2e-06
3n7t_A	247	Macrophage binding protein; seattle structural gen	3e-06
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	5e-05
3bbo_J	197	Ribosomal protein L9; large ribosomal subunit, spi	6e-04

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  161 bits (409), Expect = 4e-50
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +      T FP + +K
Sbjct: 74  GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDK 133

Query: 178 LSDQSEIENRVVVDG--NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
           +  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+A  L+++
Sbjct: 134 IPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMA 188

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  158 bits (401), Expect = 6e-49
 Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGLGG+ A  +S  + ++L+ Q+       AICA+P  VL  HG+  GK  T++P+M  +
Sbjct: 75  GGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQ 133

Query: 178 LSDQSEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
           L +      +  VV DGNLITSRGPGT+ EFAL I E+  G+ K  E+AK LL++
Sbjct: 134 LVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVA 188

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  156 bits (397), Expect = 3e-48
 Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+        ICA P   L  H +  G K T  P   +K
Sbjct: 74  GGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132

Query: 178 LSDQSE---IENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  155 bits (395), Expect = 7e-48
 Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+GGAQAFA S  L+ ++    +  +   AICA+PALV        G + T  P   + 
Sbjct: 79  GGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDH 138

Query: 178 LSDQ--SEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           +  +  S          +L+TS+GPGT++EFALA++    G   A  +A  ++L
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMVL 192

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  145 bits (369), Expect = 5e-44
 Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQ-KESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCN 176
           GG  GA+  + +  +  ++K+  K+ N+  G ICA    +      L  K+ T  P++  
Sbjct: 81  GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT--LTAKTSGLPNKQITGHPSVRG 138

Query: 177 KLSDQSE--IENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           +L +     ++  VV++ NLITS+GPGT+M F L ++E+   ++K   + K L +
Sbjct: 139 QLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSM 193

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  125 bits (317), Expect = 1e-36
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
                      +  L+ ++K   E  +     CA   ++ +  G+ KGKK    P     
Sbjct: 79  PVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA-MMFDFTGITKGKKVAVHPLAKPA 137

Query: 178 LSDQSEIENRVVVDGNLITSRGPGTSMEFALAIVEK 213
           + +    + +  +DGN  T++   T       ++E 
Sbjct: 138 IQNGIATDEKSEIDGNFFTAQDENTIWTMLPKVIEA 173

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  125 bits (317), Expect = 7e-36
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
            G  G  A  + E  ++ LK    S +  G+ICA    VL   GLLKGKK T  P     
Sbjct: 88  SGYRGIPAALQDENFMSALKLD-PSRQLIGSICAGS-FVLHELGLLKGKKLTTNPDAKAV 145

Query: 178 LSDQSEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILL 228
           L        +  +V++GN+ T+ G  + +     + E+ F   K  ++   L+
Sbjct: 146 LQGMGGDVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSVKRKQIQNQLI 198

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  118 bits (299), Expect = 9e-34
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GGL   +  A    L  ++K+ ++ +R    ICA+    L   G+L     T      +K
Sbjct: 71  GGLSWEKGTA--ADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLNDVAHTGNALASHK 127

Query: 178 LSDQSEIEN------RVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILL 228
                  E       R V DG ++T+ G    + FA+ I++         E    + 
Sbjct: 128 AYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEAELQIF 183

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  121 bits (304), Expect = 8e-33
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+       ++   V  +++  E  +   A+C  P  VL    LL+GK+AT F A+   
Sbjct: 81  GGMA-PDKMRRNPNTVRFVQEAMEQGKLVAAVCHGP-QVLIEGDLLRGKQATGFIAISKD 138

Query: 178 LSD--QSEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELA 224
           + +     ++  +VVDGNLITSR PG    F  AI+ +     K   L 
Sbjct: 139 MMNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAALP 187

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  110 bits (276), Expect = 4e-30
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG   ++     + ++  + +  +      AIC +    L   G L  +K T+      K
Sbjct: 82  GGTTWSEEIH--QPILERIGQALKIGTIVAAICGAT-DALANMGYLDTRKHTSNNLEYTK 138

Query: 178 LSDQS------EIENRVVVDGNLITSRGPGTSMEFALAIVEKF 214
           +   +            V D NL+T+ G    +EFA+ +++K 
Sbjct: 139 MVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFAMEVLKKI 180

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  107 bits (270), Expect = 3e-29
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG   +     ++KL++ +K   + N P  AIC +    L  +GLL     T       K
Sbjct: 71  GGDSWSN---DNKKLLHFVKTAFQKNIPIAAICGAV-DFLAKNGLLNNHSHTGNFVYLWK 126

Query: 178 LSDQ-----SEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
              Q     S +E + V D NL+T+ G    +EF   I+E     +    + K++ +
Sbjct: 127 DYKQYKPISSFVEKQAVRDKNLVTANGTA-PIEFTNLILEM-IDFDTPENIEKMMYM 181

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  102 bits (257), Expect = 2e-27
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 15/114 (13%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG          E  +  ++   ++ +P  AIC  P   L   G+ +G K T++ ++   
Sbjct: 83  GGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP-WSLSETGIAQGLKMTSWSSL--- 138

Query: 178 LSDQSEIEN--------RVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALEL 223
              + E+            V D  ++TSR P     F   IVE+F   + +   
Sbjct: 139 ---KRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSRR 189

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 99.4 bits (248), Expect = 1e-24
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG    +  A +E ++N++K+   S +P  +IC     +L   G+LKG+K TA+PA+   
Sbjct: 290 GG-RAPEYLALNEHVLNIVKEFMNSEKPVASICHGQ-QILAAAGVLKGRKCTAYPAVKLN 347

Query: 178 LSD------QSEIENRVVVDGNLITSRGPGTSMEFALAIVEKF 214
           +        + +  +R   DGNL+T        EF   ++   
Sbjct: 348 VVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALL 390

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 88.6 bits (220), Expect = 8e-21
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 129 SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLS-------DQ 181
           +  +V ++K+   S +P  +IC    L+L     + G+K TA+  +   L        + 
Sbjct: 107 TASVVELVKEFSRSGKPIASICHGQ-LILAAADTVNGRKCTAYATVGPSLVAAGAKWVEP 165

Query: 182 SEIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
              +   VVDG+LIT+       EF    V+   G+        + L  
Sbjct: 166 ITPD-VCVVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRILFLCG 213

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score = 91.4 bits (228), Expect = 2e-23
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 15/94 (15%)

Query: 129 SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIEN-- 186
           +EK V + ++  E ++P  +IC  P  +L    +LKG++ T+   +      + ++ N  
Sbjct: 81  NEKAVMITRRMFEDDKPVASICHGP-QILISAKVLKGRRGTSTITI------RDDVINAG 133

Query: 187 ------RVVVDGNLITSRGPGTSMEFALAIVEKF 214
                  VVVDGN ++SR PG    +    V+  
Sbjct: 134 AEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLL 167

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score = 83.1 bits (206), Expect = 5e-20
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 16/97 (16%)

Query: 129 SEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIEN-- 186
             + V   +    S +P  AIC  P  +L    +++G+K TA   +        +++N  
Sbjct: 104 DNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVIRGRKLTAVKPI------IIDVKNAG 156

Query: 187 ------RVVVDGN-LITSRGPGTSMEFALAIVEKFFG 216
                  VVVD + L+TSR P     F    +     
Sbjct: 157 AEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA 193

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 70.4 bits (173), Expect = 9e-15
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  G  A A   + +  +  +    +   ++C S +L+L   GLLKG KAT+  +  + 
Sbjct: 92  GGTDGTLAAASDAETLAFMADRGARAKYITSVC-SGSLILGAAGLLKGYKATSHWSCRDA 150

Query: 178 LSDQSEIE--NRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKIL 227
           L+    I    RVV D N IT  G    ++F L++V +   +  A     + 
Sbjct: 151 LAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLMS 202

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG G   A  +  + +  +++Q    R   ++  + +LVL   GLL+GK+AT   A    
Sbjct: 73  GGTG-VGALMEDPQALAFIRQQAARARYVTSVS-TGSLVLGAAGLLQGKRATTHWAYHEL 130

Query: 178 LSDQSEIEN--RVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKIL 227
           L+    I    RVV DGNL+T  G    ++FAL +  + F    A  +   L
Sbjct: 131 LAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQL 182

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 64.1 bits (157), Expect = 9e-13
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG G  +     +  +N +    + ++   ++C + + +L   G+L GK+AT        
Sbjct: 73  GGSG-TREKVNDDNFINFIGNMVKESKYIISVC-TGSALLSKAGILNGKRATTNKRSFKW 130

Query: 178 LSDQS-----EIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKIL 227
           +++Q+       E R V DGN+ TS G    ++  L  +E   G+ KALE+++ +
Sbjct: 131 VTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISRSI 185

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 27/122 (22%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPAL---VLEPHG--LLKGKKATAFP 172
           GG G    F  +E L  +L++  E  R   A+C  P+         G  ++KGK  T+F 
Sbjct: 97  GGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFT 156

Query: 173 AMCNKLSD---------QSEIENR-------------VVVDGNLITSRGPGTSMEFALAI 210
               +            +S +  R              V DGNLIT + P +S   A  +
Sbjct: 157 DEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKV 216

Query: 211 VE 212
           V 
Sbjct: 217 VA 218

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 121 GGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT----------- 169
           GG +   K  +L  +L          G +  + A  L   G+L     +           
Sbjct: 79  GGLRTPLKYPELDRLLNDCAAHGMALGGLW-NGAWFLGRAGVLDDYGCSIHPEQRASLSE 137

Query: 170 AFPAMCNKLSDQSEIENRV-VVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILL 228
             P           I      +D + +++  P  +ME  L +V + +G   A  + +IL 
Sbjct: 138 RSPQT--------RITPASFTLDRDRLSAASPNGAMELMLGLVRRLYGDGLAEGVEEILS 189

Query: 229 LS 230
            S
Sbjct: 190 FS 191

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 57.3 bits (138), Expect = 5e-10
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 28/124 (22%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVL---EPHGLLKGKKATAFPAM 174
           GG G      +S+ +   L+   +++R   ++C  PA  L        L G    AFP  
Sbjct: 153 GGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDA 212

Query: 175 CNKLSD-------------QSEIENR------------VVVDGNLITSRGPGTSMEFALA 209
            +K +                E++              V  D  L+T   P  +      
Sbjct: 213 ADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKL 272

Query: 210 IVEK 213
             ++
Sbjct: 273 AAQE 276

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 50.8 bits (121), Expect = 7e-08
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 33/128 (25%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVL----EPHG--LLKGKKATAF 171
            G G    + K++ L ++  +   +     A+C  PA+      +  G  L++GK  T F
Sbjct: 106 AGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKSITGF 165

Query: 172 P-------------AMCNKLSDQSEIENR--------------VVVDGNLITSRGPGTSM 204
                            N  + +   +                 + DG L+T   P ++ 
Sbjct: 166 TDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAH 225

Query: 205 EFALAIVE 212
             A+  ++
Sbjct: 226 STAVRSID 233

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 33/129 (25%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVL------EPHGLLKGKKATAF 171
            G G    + K++ L ++  K   +     AIC  P L            L++GK  T F
Sbjct: 106 AGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGF 165

Query: 172 P-------------AMCNKLSDQSEIENR--------------VVVDGNLITSRGPGTSM 204
           P                   + +                     + DG L+T     +S 
Sbjct: 166 PLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSY 225

Query: 205 EFALAIVEK 213
              +  +  
Sbjct: 226 STTIRAINA 234

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 22/116 (18%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKAT-------- 169
            G            L + +++         AI  +   V+   GLL+  KA         
Sbjct: 83  IGDPLESLDKIDPALFDWIRELHLKGSKIVAID-TGIFVVAKAGLLQQNKAVMHSYFAHL 141

Query: 170 ---AFPAMCNKLSDQSEIENRV--VVDGNLITSRGPGTSMEFALAIVEKFFGRNKA 220
               FP +         +      ++DGN+  S GP +     L IVE++FG++  
Sbjct: 142 FGELFPEI--------MLMTEQKALIDGNVYLSSGPYSHSSVMLEIVEEYFGKHTR 189

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Length = 247

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 32/127 (25%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVL---EPHG--LLKGKKATAFP 172
           GG G    F  ++ L N+ +   +     GA+C  PA++    + +G  ++K K  T F 
Sbjct: 113 GGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKTVTGFT 172

Query: 173 AMCNKLSD-------------QSEIENR--------------VVVDGNLITSRGPGTSME 205
                +                   +                  VDG ++T   P ++  
Sbjct: 173 TKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATN 232

Query: 206 FALAIVE 212
            A   ++
Sbjct: 233 TARDTIK 239

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 26/130 (20%)

Query: 118 GGLGGAQAFAKS-----------EKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGK 166
           GG G A+ F+              +  N +++   + +P GA+C SPA+V+     +   
Sbjct: 115 GGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKV 174

Query: 167 KATAFPAMCNKLSD-----QSEIENRVVVD--GNLITSRGP----GTSMEFALAIVEKFF 215
           K T        +             + V D    + +          S+      ++   
Sbjct: 175 KVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSC--SAYMRNDSLYNVYLGIQDMI 232

Query: 216 GRNKALELAK 225
             +  +   K
Sbjct: 233 --SSMVNYLK 240

>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 197

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 28/122 (22%)

Query: 4   TQHGRNALRQITKESSDRVLHHPLLFSCQGLRYRRLEVILT-------------TVAPGY 50
           +        +  K S  R          Q    +  +VIL               V  G+
Sbjct: 18  SHSFNGGANETLKVSERRF---NFEVVSQKKAKKLRKVILKEDVTDLGKQGQLLDVKAGF 74

Query: 51  FRNHLMPKLLAVP----NIEKFAHLIREQRRIFQPEEEE--------EEEEEVRVIRKSE 98
           FRN L+P   A       +++            Q  +EE        +     +V RK  
Sbjct: 75  FRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLAMVFQTVGAFKVKRKGG 134

Query: 99  DN 100
             
Sbjct: 135 KG 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	100.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	99.98
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	99.98
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	99.97
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	99.97
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	99.97
1u9c_A	224	APC35852; structural genomics, protein structure i	99.96
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.95
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.95
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.95
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.94
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.93
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.93
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.92
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.89
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.72
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.48
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.06
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	98.85
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	98.5
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.14
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	97.07
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	96.95
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	96.94
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	96.86
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	96.52
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	96.32
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	95.89
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	95.88
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	95.78
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	95.62
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	95.42
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	95.23
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	95.04
3m3p_A	250	Glutamine amido transferase; structural genomics,	94.97
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	94.86
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	94.82
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	94.68
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	94.39
2a9v_A	212	GMP synthase; structural genomics, joint center fo	93.68
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	93.43
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	93.32
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	92.42
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	89.6
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	88.8
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	87.43
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	87.33
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	86.57
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	85.89
3uow_A	556	GMP synthetase; structural genomics consortium, SG	84.76
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	82.54
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	82.0

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=1.1e-37  Score=264.35  Aligned_cols=180  Identities=23%  Similarity=0.285  Sum_probs=161.7

Q ss_pred             CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccceec
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENAR  116 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~liv  116 (232)
                      .+++|+||+||||+++|+. |.+++....+..+.+++.+++   ++.++   .|+.+.      ++..++++++.|.|||
T Consensus         4 m~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~---~V~~~---~G~~v~------~d~~l~~~~~~D~liv   71 (231)
T 3noq_A            4 MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG---PVVAS---SGLVLQ------ATTSFADCPPLDVICI   71 (231)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE---EEECT---TSCEEE------ECEETTTCCCCSEEEE
T ss_pred             CcEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC---cEEcC---CCCEEe------cccChhHCCcCCEEEE
Confidence            4579999999999999999 999995446778899999887   77665   499999      9988988877888999


Q ss_pred             cCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcEEEcCCE
Q 026831          117 LGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRVVVDGNL  194 (232)
Q Consensus       117 pGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~v~Dg~~  194 (232)
                      |||. +...+..++++++|||++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.  .+.++.+|+|||+
T Consensus        72 pGG~-g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~-~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~i  149 (231)
T 3noq_A           72 PGGT-GVGALMEDPQALAFIRQQAARARYVTSVSTGS-LVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL  149 (231)
T ss_dssp             CCST-THHHHTTCHHHHHHHHHHHTTCSEEEEETTHH-HHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTE
T ss_pred             CCCC-ChhhhccCHHHHHHHHHHHhcCCEEEEECHHH-HHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCE
Confidence            9997 46667789999999999999999999999995 889999999999999999999988752  3568899999999


Q ss_pred             EEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          195 ITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       195 iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      |||+|+++++||+++||++++|++.|++|++.|+|+.
T Consensus       150 iTs~G~~a~~d~aL~li~~~~G~~~A~~va~~l~~~~  186 (231)
T 3noq_A          150 LTGGGITAGIDFALTLAAELFDAATAQRVQLQLEYAP  186 (231)
T ss_dssp             EEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCC
T ss_pred             EECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhceeCC
Confidence            9999999999999999999999999999999999873

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=2.3e-37  Score=265.70  Aligned_cols=183  Identities=22%  Similarity=0.271  Sum_probs=162.9

Q ss_pred             CCCccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhc-cc
Q 026831           36 YRRLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARR-LE  113 (232)
Q Consensus        36 ~~~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~-d~  113 (232)
                      |..+++|+||+||||+++|+. |.+++....+..+.+++.+++   ++.++   .|+.+.      ++..+++++.. |.
T Consensus        20 ~~m~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~---~V~~~---~G~~i~------~d~~l~~~~~~yD~   87 (253)
T 3ewn_A           20 WMGDEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD---PVTSD---AGLAIV------PTATFGTCPRDLTV   87 (253)
T ss_dssp             CCCCCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS---CEECT---TSCEEC------CSEETTTSCSSCSE
T ss_pred             cCCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC---eEEcC---CCCEEe------CCcCHHHcCCCCCE
Confidence            445689999999999999999 999986566788999999887   77765   499999      99889887654 77


Q ss_pred             eeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcEEEc
Q 026831          114 NARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRVVVD  191 (232)
Q Consensus       114 livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~v~D  191 (232)
                      ||||||..+...+..++++++|||++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.  .+.++.+|+|
T Consensus        88 liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~-~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~D  166 (253)
T 3ewn_A           88 LFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGS-LILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRD  166 (253)
T ss_dssp             EEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH-HHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEE
T ss_pred             EEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEE
Confidence            9999997235567789999999999999999999999995 889999999999999999999999852  3568899999


Q ss_pred             CCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          192 GNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       192 g~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      ||+|||+|+++++||+++||++++|+++|++|++.|+|+.
T Consensus       167 g~iiTs~G~~a~idlaL~lv~~l~G~~~A~~va~~l~~~~  206 (253)
T 3ewn_A          167 RNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLMSEYDP  206 (253)
T ss_dssp             TTEEEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCC
T ss_pred             CCEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhcccCC
Confidence            9999999999999999999999999999999999999874

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.4e-37  Score=260.28  Aligned_cols=182  Identities=20%  Similarity=0.242  Sum_probs=158.6

Q ss_pred             CCCccEEEEEecCCccccccc-chhhhccCC-CceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhccc
Q 026831           36 YRRLEVILTTVAPGYFRNHLM-PKLLAVPNI-EKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLE  113 (232)
Q Consensus        36 ~~~~~~I~iLl~~gf~~~el~-p~~~a~~~~-~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~  113 (232)
                      |.++++|+||++|||+++|+. |.+++.... +..+.+++.+++   ++.++   .|+++.      ++..++++++.|.
T Consensus         1 m~~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~---~V~~~---~G~~v~------~d~~~~~~~~~D~   68 (211)
T 3mgk_A            1 MSLSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG---LVESS---QKVRVE------TSLYTRDENIEKI   68 (211)
T ss_dssp             ---CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE---EEECT---TCCEEE------EBCCCCCSSSEEE
T ss_pred             CCCceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC---eEecC---CCcEEE------eccchhhCCCCCE
Confidence            346789999999999999999 888884332 467889998877   77665   499999      8888887766788


Q ss_pred             eeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCc----c-CCCcE
Q 026831          114 NARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS----E-IENRV  188 (232)
Q Consensus       114 livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~----~-~d~~~  188 (232)
                      ||||||. +...+..++++++|||++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.+    + .++.+
T Consensus        69 livpGG~-~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~-~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~  146 (211)
T 3mgk_A           69 LFVPGGS-GTREKVNDDNFINFIGNMVKESKYIISVCTGS-ALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARW  146 (211)
T ss_dssp             EEECCST-HHHHHTTCHHHHHHHHHHHHHCSEEEECTTHH-HHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSE
T ss_pred             EEECCCc-chhhhcCCHHHHHHHHHHHHcCCEEEEEchHH-HHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeE
Confidence            9999997 45556789999999999999999999999996 7899999999999999999999998752    3 47899


Q ss_pred             EEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          189 VVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       189 v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      |+|||+|||+|+++++||+++||++++|+++|++|++.|+++.
T Consensus       147 v~Dg~iiTs~G~~a~~dlal~lv~~~~G~~~A~~va~~l~~~~  189 (211)
T 3mgk_A          147 VKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISRSIEYFW  189 (211)
T ss_dssp             EEETTEEEECSHHHHHHHHHHHHHHHHCHHHHHHHHHHHTCCC
T ss_pred             EEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHhcEECC
Confidence            9999999999999999999999999999999999999999873

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=5.4e-37  Score=251.98  Aligned_cols=180  Identities=32%  Similarity=0.474  Sum_probs=160.2

Q ss_pred             CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccc-cccCCccccccccceEEeeccCCccchhHHHhh--hccc
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQR-RIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLE  113 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~-~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~  113 (232)
                      .+++|+|+++|||++.|+. |.+++ ...+..+.+++.++ +   |+.++   .|+++.      ++..+++++  +.|.
T Consensus         4 m~kkv~ill~~g~~~~e~~~~~~~l-~~ag~~v~~~s~~~~~---~v~~~---~g~~i~------~d~~l~~~~~~~~D~   70 (190)
T 4e08_A            4 MSKSALVILAPGAEEMEFIIAADVL-RRAGIKVTVAGLNGGE---AVKCS---RDVQIL------PDTSLAQVASDKFDV   70 (190)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEESSSSS---CEECT---TSCEEE------CSEETGGGTTCCCSE
T ss_pred             CCcEEEEEECCCchHHHHHHHHHHH-HHCCCEEEEEECCCCc---ceecC---CCcEEE------CCCCHHHCCcccCCE
Confidence            3579999999999999999 88888 55678899999887 5   66665   499999      999998875  3577


Q ss_pred             eeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC-ccC-CCcEEEc
Q 026831          114 NARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ-SEI-ENRVVVD  191 (232)
Q Consensus       114 livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~-~~~-d~~~v~D  191 (232)
                      ||||||.++...+..++++++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++. .+. ++.+|+|
T Consensus        71 livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~d  149 (190)
T 4e08_A           71 VVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAP-TVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKD  149 (190)
T ss_dssp             EEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEE
T ss_pred             EEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEE
Confidence            9999996445567789999999999999999999999996 789999999999999999999999884 344 5899999


Q ss_pred             CCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          192 GNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       192 g~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      ||+|||+|+.+++||++++|++++|+++|++|++.|+++.
T Consensus       150 g~iiTs~g~~a~~d~al~li~~~~g~~~a~~va~~l~~~~  189 (190)
T 4e08_A          150 GNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVAY  189 (190)
T ss_dssp             TTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHHHHTCCC
T ss_pred             CCEEECCChHHHHHHHHHHHHHhcCHHHHHHHHHhhCccc
Confidence            9999999999999999999999999999999999999874

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=1.3e-36  Score=251.14  Aligned_cols=180  Identities=30%  Similarity=0.357  Sum_probs=158.3

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHh---hhccce
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA---ARRLEN  114 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~---~~~d~l  114 (232)
                      +++|+||++|||++.|+. |.+++ ...+..+.+++.+++  .++.++   .|+++.      ++..++++   ++.|.|
T Consensus         3 ~~~v~ill~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~~~--~~v~~~---~g~~v~------~d~~l~~~~~~~~~D~l   70 (197)
T 2rk3_A            3 SKRALVILAKGAEEMETVIPVDVM-RRAGIKVTVAGLAGK--DPVQCS---RDVVIC------PDASLEDAKKEGPYDVV   70 (197)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEETTCS--SCEECT---TSCEEC------CSEEHHHHHTTCCCSEE
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHH-HHCCCEEEEEEcCCC--CccccC---CCCEEe------CCcCHHHcCCccCCCEE
Confidence            468999999999999999 88888 555788889988764  156554   599999      99899887   467889


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCc---cCCCcEEEc
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS---EIENRVVVD  191 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~---~~d~~~v~D  191 (232)
                      |||||.++...+..++++++|||++++++++|++||+|+ ++|+++|||+||++|+||...+.|++..   +.+..+|+|
T Consensus        71 ivpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~-~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~D  149 (197)
T 2rk3_A           71 VLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP-TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKD  149 (197)
T ss_dssp             EECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEE
T ss_pred             EECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEe
Confidence            999997445556789999999999999999999999996 7899999999999999999999998642   678999999


Q ss_pred             CCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          192 GNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       192 g~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      ||+|||+|+.+++|+++++|++++|++.|++|++.|++++
T Consensus       150 g~iiTs~g~~a~~d~al~li~~l~g~~~a~~va~~~~~~~  189 (197)
T 2rk3_A          150 GLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKD  189 (197)
T ss_dssp             TTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTC--
T ss_pred             CCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999876

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=2.8e-37  Score=257.90  Aligned_cols=181  Identities=15%  Similarity=0.162  Sum_probs=154.8

Q ss_pred             CCccEEEEEecCCccccccc-chhhhcc------CCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh
Q 026831           37 RRLEVILTTVAPGYFRNHLM-PKLLAVP------NIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA  109 (232)
Q Consensus        37 ~~~~~I~iLl~~gf~~~el~-p~~~a~~------~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~  109 (232)
                      .++++|+||+||||+++|+. |.+++..      ..+..+.+++.+++   |+.++   .|+++.      ++..+++++
T Consensus         6 ~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~---~v~~~---~G~~v~------~d~~~~~~~   73 (209)
T 3er6_A            6 KKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR---PLIGR---GGISVQ------PTAQWQSFD   73 (209)
T ss_dssp             -CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS---CEEET---TTEEEE------CSSCGGGCS
T ss_pred             CCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC---ceecC---CCeEEe------CCcCccccC
Confidence            35789999999999999999 7776631      12356888888876   77765   499999      999998887


Q ss_pred             hccceeccCChhhHHh--hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----cc
Q 026831          110 RRLENARLGGLGGAQA--FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SE  183 (232)
Q Consensus       110 ~~d~livpGg~~~~~~--~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~  183 (232)
                      +.|.||||||.. ...  +..++++++|||++++++++|++||+|+ ++||++|||+||++|+||...+.|++.    .+
T Consensus        74 ~~D~livpGg~~-~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~-~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~  151 (209)
T 3er6_A           74 FTNILIIGSIGD-PLESLDKIDPALFDWIRELHLKGSKIVAIDTGI-FVVAKAGLLQQNKAVMHSYFAHLFGELFPEIML  151 (209)
T ss_dssp             CCSEEEECCCSC-HHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEE
T ss_pred             CCCEEEECCCCC-chhhhccCCHHHHHHHHHHHhcCCEEEEEcHHH-HHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEE
Confidence            788899999973 332  2579999999999999999999999996 889999999999999999999988763    34


Q ss_pred             C-CCcEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          184 I-ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       184 ~-d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      . +..+|+|||+|||+|+++++||+++||++++|+++|++|++.|+++.
T Consensus       152 ~~~~~~v~Dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~  200 (209)
T 3er6_A          152 MTEQKALIDGNVYLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIE  200 (209)
T ss_dssp             CTTCSEEEETTEEEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC--
T ss_pred             ecCCEEEEeCCEEECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCc
Confidence            3 45799999999999999999999999999999999999999999864

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=4.1e-36  Score=248.22  Aligned_cols=181  Identities=23%  Similarity=0.275  Sum_probs=151.6

Q ss_pred             CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh-------
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA-------  109 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~-------  109 (232)
                      .|+||+|+++|||+++|+. |.+++ ...+..+.+++....--.++.++   .|+++.      ++..+++++       
T Consensus         3 ~M~kV~ill~dGfe~~E~~~p~~vl-~~ag~~v~~~s~~~~~~~~v~~~---~g~~v~------~d~~~~~~~~~d~~~~   72 (194)
T 4gdh_A            3 HMVKVCLFVADGTDEIEFSAPWGIF-KRAEIPIDSVYVGENKDRLVKMS---RDVEMY------ANRSYKEIPSADDFAK   72 (194)
T ss_dssp             --CCEEEEEETTCCHHHHHHHHHHH-HHTTCCEEEEEESSCTTCEEECT---TSCEEE------CSEEGGGSCCHHHHHH
T ss_pred             CCCEEEEEECCCcCHHHHHHHHHHH-HHCCCeEEEEEEcCCCCceEecC---CCceee------ccccHhhCCccccccc
Confidence            5789999999999999999 99988 55576676666543311134443   599998      777766542       


Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhC-CCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCC
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIEN  186 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~-g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~  186 (232)
                      +.|.|+||||.++.+.+..++.+++|||+++++ ++++++||+|+ + |+++|+|+||++|+||...+.+++.  .+.++
T Consensus        73 ~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~-l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~  150 (194)
T 4gdh_A           73 QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-L-TAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQ  150 (194)
T ss_dssp             HCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-H-HHHHTTCCCSEECCCGGGHHHHHHTTCEECCS
T ss_pred             cCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-c-chhhceecCCceEecCcHHHHHHhcCCeeecc
Confidence            357799999976677788999999999999865 78999999995 4 8889999999999999999999874  57899


Q ss_pred             cEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          187 RVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       187 ~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      ++|+|||+|||+|+.+++||+++||++++|++.|++|++.|+|+
T Consensus       151 ~vV~Dg~iiTs~g~~~~~d~al~lve~l~G~~~a~~va~~l~~P  194 (194)
T 4gdh_A          151 PVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP  194 (194)
T ss_dssp             SEEEETTEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTCC
T ss_pred             eEEEcCCEEECCCHhHHHHHHHHHHHHHcCHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999999999999985

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=4.5e-37  Score=255.43  Aligned_cols=177  Identities=15%  Similarity=0.156  Sum_probs=150.0

Q ss_pred             CccEEEEEecCCccccccc-chhhhccC---C--CceEEEEeccccccCCccccccccceEEeeccCCccchhHHHh--h
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPN---I--EKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA--A  109 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~---~--~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~--~  109 (232)
                      ++++|+||+||||+++|+. |.+++...   .  +..+.+++.+++   ++.++   .|+++.      ++ .++++  +
T Consensus         4 ~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~---~v~~~---~G~~i~------~d-~l~~~~~~   70 (202)
T 3gra_A            4 APYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD---RVLSD---LGLELV------AT-ELSAAALK   70 (202)
T ss_dssp             -CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS---EEEBT---TSCEEE------CE-ECCSGGGT
T ss_pred             CcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC---ceEcC---CCCEEE------CC-CcccccCC
Confidence            4679999999999999999 77776211   1  256888998876   77765   499999      88 88873  4


Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC----ccCC
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ----SEIE  185 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~----~~~d  185 (232)
                      +.|.||||||.+ ... .. +++++|||++++++++|++||+|+ ++||++|||+||++|+||...+.|++.    .+.+
T Consensus        71 ~~D~livpGG~~-~~~-~~-~~l~~~l~~~~~~g~~iaaIC~G~-~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~  146 (202)
T 3gra_A           71 ELDLLVVCGGLR-TPL-KY-PELDRLLNDCAAHGMALGGLWNGA-WFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITP  146 (202)
T ss_dssp             TCSEEEEECCTT-CCS-CC-TTHHHHHHHHHHHTCEEEEETTHH-HHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECS
T ss_pred             CCCEEEEeCCCc-hhh-cc-HHHHHHHHHHHhhCCEEEEECHHH-HHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecC
Confidence            678899999974 322 24 899999999999999999999996 889999999999999999999988763    3567


Q ss_pred             CcEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          186 NRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       186 ~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      +.+|+|||+|||+|+++++||+++||++++|++.|++|++.|+++.
T Consensus       147 ~~~v~dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~  192 (202)
T 3gra_A          147 ASFTLDRDRLSAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSG  192 (202)
T ss_dssp             SSEEEETTEEEESSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC---
T ss_pred             CeEEEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCc
Confidence            7999999999999999999999999999999999999999999863

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=8.1e-36  Score=248.73  Aligned_cols=179  Identities=27%  Similarity=0.350  Sum_probs=158.5

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccc-cccCCccccccccceEEeeccCCccchhHHHhh--hccce
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQR-RIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLEN  114 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~-~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~l  114 (232)
                      +++|+||++|||++.|+. |.+++ ...+..+.+++.++ .   |+.++   .|+.+.      ++..+++++  +.|.|
T Consensus         9 ~~~v~ill~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~g~~---~v~~~---~G~~v~------~d~~l~~~~~~~~D~l   75 (208)
T 3ot1_A            9 SKRILVPVAHGSEEMETVIIVDTL-VRAGFQVTMAAVGDKL---QVQGS---RGVWLT------AEQTLEACSAEAFDAL   75 (208)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEESSSCS---EEECT---TSCEEE------CSEEGGGCCGGGCSEE
T ss_pred             CCeEEEEECCCCcHHHHHHHHHHH-HHCCCEEEEEEcCCCc---ceecC---CCcEEe------CCCCHHHCCCcCCCEE
Confidence            479999999999999999 88888 55678899999875 4   66665   499999      998898873  56789


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCccCCCcEEE--cC
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVV--DG  192 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~~d~~~v~--Dg  192 (232)
                      |||||.++...+..++++++||+++++++++|++||+|++++|+++|||+||++|+||...+.|.+..+.++.+++  ||
T Consensus        76 ivpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg  155 (208)
T 3ot1_A           76 ALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQ  155 (208)
T ss_dssp             EECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGG
T ss_pred             EECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCC
Confidence            9999975466677899999999999999999999999953789999999999999999999999877777777886  55


Q ss_pred             CEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          193 NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       193 ~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      |+|||+|+.+++|+++++|++++|++.|++|++.|++.
T Consensus       156 ~iiTs~g~~a~~d~al~lv~~l~G~~~a~~va~~l~~~  193 (208)
T 3ot1_A          156 HLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMVLH  193 (208)
T ss_dssp             TEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             CEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhheeC
Confidence            99999999999999999999999999999999999874

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=5.3e-35  Score=243.16  Aligned_cols=182  Identities=29%  Similarity=0.391  Sum_probs=159.4

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hcccee
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENA  115 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~li  115 (232)
                      +++|+||++|||++.|+. |.+++ ...+..+.+++.+++...|+.++   .|+.+.      ++..+++++  +.|.||
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~~~~~~~v~~~---~g~~v~------~~~~l~~~~~~~~D~li   71 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLL-VRGGIKVTTASVASDGNLAITCS---RGVKLL------ADAPLVEVADGEYDVIV   71 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEECSSTTCCEEECT---TSCEEE------CSEEHHHHTTSCCSEEE
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHH-HHCCCEEEEEeCCCCCCceeecC---CCeEEe------cCCCHHHCCcccCCEEE
Confidence            468999999999999999 88888 55678888888876410144444   599999      998998873  467899


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCccCCCcEEEcCCE-
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNL-  194 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~~d~~~v~Dg~~-  194 (232)
                      ||||.++...+..++.+.+|||++++++++|++||+|++++|+++|||+||++|+||...+.+.+..+.++.+|+|||+ 
T Consensus        72 vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~  151 (205)
T 2ab0_A           72 LPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVK  151 (205)
T ss_dssp             ECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTT
T ss_pred             ECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcC
Confidence            9999754666678999999999999999999999999537899999999999999999999998888888899999999 


Q ss_pred             -EEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          195 -ITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       195 -iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                       |||+|+.+++|+++++|++++|++.|++|++.|+++
T Consensus       152 viTs~g~~s~~d~al~li~~l~g~~~a~~va~~l~~~  188 (205)
T 2ab0_A          152 LLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMA  188 (205)
T ss_dssp             EEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTTTCC
T ss_pred             eEECcChhhHHHHHHHHHHHhcChHHHHHHHHhcccC
Confidence             999999999999999999999999999999999986

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=100.00  E-value=4.4e-35  Score=249.15  Aligned_cols=176  Identities=19%  Similarity=0.229  Sum_probs=153.5

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCC--ceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhcccee
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIE--KFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENA  115 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~--~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~li  115 (232)
                      +++|+||++|||+++|+. |.+++.. .+  ..+.+++ +++   ++.++   .|+.+.      ++..+++.++.|.||
T Consensus        20 ~~kV~ill~dGf~~~e~~~p~dvl~~-~~~~~~v~~vs-~~~---~V~ss---~G~~v~------~d~~l~~~~~~D~li   85 (236)
T 3bhn_A           20 MYKVGIVLFDDFTDVDFFLMNDLLGR-TSDSWTVRILG-TKP---EHHSQ---LGMTVK------TDGHVSEVKEQDVVL   85 (236)
T ss_dssp             CEEEEEECCTTBCHHHHHHHHHHHTT-CSSSEEEEEEE-SSS---EEEBT---TCCEEE------CSEEGGGGGGCSEEE
T ss_pred             CCEEEEEeCCCChHHHHHHHHHHHHc-CCCCEEEEEEE-CCC---cEEec---CCcEEe------cCcccccccCCCEEE
Confidence            468999999999999999 9888844 33  5788888 766   67665   499999      888888866788899


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCC-cEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcEEEcC
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNR-PYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRVVVDG  192 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~-~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~v~Dg  192 (232)
                      ||||..+...+..++++++||  ++++++ +|++||+|+ ++|+++|||+||++|+||...+.|++.  .+.+..+|+||
T Consensus        86 VPGG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~-~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg  162 (236)
T 3bhn_A           86 ITSGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGS-FVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEG  162 (236)
T ss_dssp             ECCCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHH-HHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEET
T ss_pred             EcCCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHH-HHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeC
Confidence            999932455577899999999  555666 999999996 789999999999999999999999875  46899999999


Q ss_pred             CEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          193 NLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       193 ~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      |+|||+|+.+++||++++|++++|++.|++|++.|+++.
T Consensus       163 ~iiTs~G~~a~~dlal~lIe~l~G~~~A~~va~~l~~~~  201 (236)
T 3bhn_A          163 NIATAGGCLSLLYLVGWLAERLFDSVKRKQIQNQLIPAG  201 (236)
T ss_dssp             TEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHTTTSCTT
T ss_pred             CEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhcccCC
Confidence            999999999999999999999999999999999999873

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=3.2e-34  Score=239.82  Aligned_cols=175  Identities=14%  Similarity=0.046  Sum_probs=151.7

Q ss_pred             ccEEEEEecCCccccccc-chhhhc--c-----CCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh-
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAV--P-----NIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA-  109 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~--~-----~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~-  109 (232)
                      +++|+||++|||+++|+. |.+++.  +     ..+..+.+++.+++   ++.++   .|+++.      ++..+++++ 
T Consensus         5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~---~v~~~---~G~~i~------~d~~~~~~~~   72 (212)
T 3efe_A            5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE---MITTM---GGLRIK------PDISLDECTL   72 (212)
T ss_dssp             CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC---CEECT---TCCEEC------CSEEGGGCCC
T ss_pred             ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC---eEEcC---CCCEEe------cCcCHHHCCc
Confidence            679999999999999999 777763  1     34567889999887   77765   499999      999999886 


Q ss_pred             -hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCc-cchhhhccC-----c
Q 026831          110 -RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP-AMCNKLSDQ-----S  182 (232)
Q Consensus       110 -~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~-~~~~~~~~~-----~  182 (232)
                       +.|.||||||.+ . ....++++++|||++++++++|++||+|+ ++||++|||+||++|+|| ...+.|++.     .
T Consensus        73 ~~~D~livpGG~~-~-~~~~~~~l~~~l~~~~~~gk~iaaiC~G~-~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~  149 (212)
T 3efe_A           73 ESKDLLILPGGTT-W-SEEIHQPILERIGQALKIGTIVAAICGAT-DALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKF  149 (212)
T ss_dssp             CTTCEEEECCCSC-T-TSGGGHHHHHHHHHHHHHTCEEEEETHHH-HHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTT
T ss_pred             cCCCEEEECCCCc-c-ccccCHHHHHHHHHHHHCCCEEEEEcHHH-HHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccc
Confidence             678899999963 3 35789999999999999999999999996 789999999999999997 666777653     3


Q ss_pred             cCCCcEEEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          183 EIENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       183 ~~d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      +.++.+|+|||+|||+|+. ++||++++|+++.|. .|.+|++++++.
T Consensus       150 ~~~~~~V~Dg~iiTs~G~~-~~d~al~li~~l~g~-~a~~va~~~~~~  195 (212)
T 3efe_A          150 YELGPAVSDANLVTASGIA-PLEFAMEVLKKIDVF-TLDALHSWYNLN  195 (212)
T ss_dssp             BCCCSEEEETTEEEECTTC-HHHHHHHHHHHHTCS-CHHHHHHHHHHH
T ss_pred             cCCCcEEEECCEEECCCch-HHHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence            5789999999999999985 999999999999997 999999999864

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=1.8e-33  Score=226.23  Aligned_cols=162  Identities=23%  Similarity=0.291  Sum_probs=143.6

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hcccee
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENA  115 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~li  115 (232)
                      .++|+||++|||++.|+. |.+++ ...+..+.+++.+++   ++.++   .|+.+.      ++..+++++  +.|.|+
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~~~---~v~~~---~g~~i~------~~~~~~~~~~~~~D~li   68 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRI-KEEGHEVYVASFQRG---KITGK---HGYSVN------VDLTFEEVDPDEFDALV   68 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHH-HHTTCEEEEEESSSE---EEECT---TSCEEE------ECEEGGGCCGGGCSEEE
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHH-HHCCCEEEEEECCCC---EEecC---CCcEEe------ccCChhHCCHhhCCEEE
Confidence            469999999999999999 88888 556788999999887   66665   499999      898898874  467899


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcEEEcCC
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRVVVDGN  193 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~v~Dg~  193 (232)
                      ||||. +...+..++++.+|||++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.  .+.++.+|.|||
T Consensus        69 vpGG~-~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~  146 (168)
T 3l18_A           69 LPGGK-APEIVRLNEKAVMITRRMFEDDKPVASICHGP-QILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGN  146 (168)
T ss_dssp             ECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETT
T ss_pred             ECCCc-CHHHhccCHHHHHHHHHHHHCCCEEEEECHhH-HHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCC
Confidence            99997 45556789999999999999999999999996 789999999999999999999999885  467889999999


Q ss_pred             EEEcCChhhHHHHHHHHHHHhc
Q 026831          194 LITSRGPGTSMEFALAIVEKFF  215 (232)
Q Consensus       194 ~iTa~g~~a~~d~~l~lI~~~~  215 (232)
                      +|||+|+.+++|+++++|+++.
T Consensus       147 iiT~~g~~~~~d~~l~li~~l~  168 (168)
T 3l18_A          147 WVSSRHPGDLYAWMREFVKLLH  168 (168)
T ss_dssp             EEEECSGGGHHHHHHHHGGGCC
T ss_pred             EEEcCCHHHHHHHHHHHHHhhC
Confidence            9999999999999999999763

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=1.7e-33  Score=230.70  Aligned_cols=173  Identities=20%  Similarity=0.255  Sum_probs=145.7

Q ss_pred             CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccc--cccceEEeeccCCccchhHHHh--hhcc
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEE--EEEEVRVIRKSEDNMSREFEKA--ARRL  112 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~--~~~Gl~v~~~~~~~~~~~~~~~--~~~d  112 (232)
                      ++++|+||++|||+..|+. |.+++ ...+..+.+++.+.+   ++.+..  .+.|+.+.      ++..++++  .+.|
T Consensus         8 ~~~~v~il~~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~~~---~v~~~~~~~~~g~~v~------~~~~~~~~~~~~~D   77 (190)
T 2vrn_A            8 TGKKIAILAADGVEEIELTSPRAAI-EAAGGTTELISLEPG---EIQSMKGDIEPQEKYR------VDHVVSEVQVSDYD   77 (190)
T ss_dssp             TTCEEEEECCTTCBHHHHHHHHHHH-HHTTCEEEEEESSSS---EEEEEETTTEEEEEEE------CSEEGGGCCGGGCS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH-HHCCCEEEEEecCCC---ccccccccccCCcEEe------CCCChhhCChhhCC
Confidence            3479999999999999999 88888 455788889998876   554410  03489998      88888876  3567


Q ss_pred             ceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcEEE
Q 026831          113 ENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRVVV  190 (232)
Q Consensus       113 ~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~v~  190 (232)
                      .||||||..+...+..++++++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.  .+.+..+++
T Consensus        78 ~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~-~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~  156 (190)
T 2vrn_A           78 GLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP-WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVT  156 (190)
T ss_dssp             EEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTT-HHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEE
T ss_pred             EEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhH-HHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEE
Confidence            89999996445556789999999999999999999999996 789999999999999999999999875  455666788


Q ss_pred             cCCEEEcCChhhHHHHHHHHHHHh-cCHHHHH
Q 026831          191 DGNLITSRGPGTSMEFALAIVEKF-FGRNKAL  221 (232)
Q Consensus       191 Dg~~iTa~g~~a~~d~~l~lI~~~-~G~~~a~  221 (232)
                      |||+|||+|+.+++|+++++|+++ +|++.|+
T Consensus       157 Dg~iiTs~g~~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          157 DKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             ETTEEECSSGGGHHHHHHHHHHHHHHCCCGGG
T ss_pred             cCCEEEcCChhhHHHHHHHHHHHHhccccccc
Confidence            999999999999999999999999 8887664

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=100.00  E-value=5e-33  Score=227.94  Aligned_cols=173  Identities=16%  Similarity=0.164  Sum_probs=147.6

Q ss_pred             ccEEEEEecCCccccccc-chhhhccC-CCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hccce
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPN-IEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLEN  114 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~-~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~l  114 (232)
                      |++|+||++|||++.|+. |...+ .. .+..+.+++.+++   ++.++   .|+.+.      ++..+++++  +.|.|
T Consensus         1 m~~i~ill~~g~~~~e~~~~~~~l-~~a~~~~v~~vs~~~~---~v~~~---~g~~v~------~~~~~~~~~~~~~D~l   67 (188)
T 2fex_A            1 MTRIAIALAQDFADWEPALLAAAA-RSYLGVEIVHATPDGM---PVTSM---GGLKVT------PDTSYDALDPVDIDAL   67 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHH-HHHSCCEEEEEETTSS---CEECT---TCCEEE------CSEEGGGCCTTTCSEE
T ss_pred             CcEEEEEeCCCchHHHHHHHHHHH-hhcCCceEEEEeCCCC---ceeeC---CCcEEe------ccccHHHCCcccCCEE
Confidence            368999999999999999 88877 34 5778899999877   77765   499999      888888875  56789


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC-----ccCCCc-E
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ-----SEIENR-V  188 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~-----~~~d~~-~  188 (232)
                      |||||.+ .. ...++.+++|||++++++++|++||+|+ ++|+++|||+||++|+||...+.+++.     .+.++. +
T Consensus        68 ivpGG~~-~~-~~~~~~l~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~  144 (188)
T 2fex_A           68 VIPGGLS-WE-KGTAADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRA  144 (188)
T ss_dssp             EECCBSH-HH-HTCCCCCHHHHHHHHHTTCEEEEETHHH-HHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSC
T ss_pred             EECCCCc-cc-ccccHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCE
Confidence            9999973 33 4678999999999999999999999996 789999999999999999876665543     356778 9


Q ss_pred             EEcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          189 VVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       189 v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      |+|||+|||+|++ ++||++++|+++.|.+.+.  ++++.|-
T Consensus       145 v~Dg~iiTs~g~~-~~d~al~lv~~l~~~~~~~--~~~~~~~  183 (188)
T 2fex_A          145 VSDGGVVTAAGSA-PVSFAVEILKSLGLFGPEA--EAELQIF  183 (188)
T ss_dssp             EEETTEEEECTTC-HHHHHHHHHHHTTCCSHHH--HHHHGGG
T ss_pred             EEECCEEECCCcc-HHHHHHHHHHHccCCCHHH--HHHHHHH
Confidence            9999999999986 8999999999999998887  7777653

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=99.98  E-value=1.2e-32  Score=224.68  Aligned_cols=166  Identities=14%  Similarity=0.178  Sum_probs=145.7

Q ss_pred             CCCc-cEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hc
Q 026831           36 YRRL-EVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RR  111 (232)
Q Consensus        36 ~~~~-~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~  111 (232)
                      |.+. ++|.||+.|||++.|+. |.+++ ...|..+.+++.+.+   ++.+.   .|+++.      ++..+++++  +.
T Consensus         4 m~~t~~~v~il~~~gFe~~E~~~p~~~l-~~ag~~V~~~s~~~~---~v~~~---~G~~v~------~d~~l~~v~~~~y   70 (177)
T 4hcj_A            4 MGKTNNILYVMSGQNFQDEEYFESKKIF-ESAGYKTKVSSTFIG---TAQGK---LGGMTN------IDLLFSEVDAVEF   70 (177)
T ss_dssp             -CCCCEEEEECCSEEECHHHHHHHHHHH-HHTTCEEEEEESSSE---EEEET---TSCEEE------ECEEGGGCCGGGC
T ss_pred             cccCCCEEEEECCCCccHHHHHHHHHHH-HHCCCEEEEEECCCC---eEeeC---CCCEEe------cCccHHHCCHhHC
Confidence            5444 56777889999999999 99999 667889999998887   77665   499999      999998863  35


Q ss_pred             cceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcEE
Q 026831          112 LENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRVV  189 (232)
Q Consensus       112 d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~v  189 (232)
                      |.|+||||. +...+..++++++|||++++++++|++||+|+ ++|+++|||+||++|+||...+.+++.  .+.++.+|
T Consensus        71 D~liiPGG~-g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~-~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV  148 (177)
T 4hcj_A           71 DAVVFVGGI-GCITLWDDWRTQGLAKLFLDNQKIVAGIGSGV-VIMANAKILEEINVTCLSADESHVRHGNANIMSENVV  148 (177)
T ss_dssp             SEEEECCSG-GGGGGTTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEE
T ss_pred             CEEEECCCc-cHHHHhhCHHHHHHHHHHHHhCCEEEEecccH-HHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEE
Confidence            779999997 46678899999999999999999999999996 789999999999999999999999874  57899999


Q ss_pred             EcCCEEEcCChhhHHHHHHHHHHHhcC
Q 026831          190 VDGNLITSRGPGTSMEFALAIVEKFFG  216 (232)
Q Consensus       190 ~Dg~~iTa~g~~a~~d~~l~lI~~~~G  216 (232)
                      +|||+|||+|+.+++||++++|+.+.+
T Consensus       149 ~Dg~liTs~g~~~~~~~a~~lve~L~s  175 (177)
T 4hcj_A          149 VSGNIVTANGPTSSKDFANAVVGVLNS  175 (177)
T ss_dssp             EETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             EECCEEECCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998854

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=99.98  E-value=9.1e-33  Score=230.31  Aligned_cols=171  Identities=19%  Similarity=0.177  Sum_probs=144.5

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh-hccceec
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA-RRLENAR  116 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~-~~d~liv  116 (232)
                      +++|+||++|||+++|+. |...+....+..+.+++.+++    +.++   .|+++.      ++..+++++ +.|.|+|
T Consensus         3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~----V~~~---~G~~v~------~d~~l~~~~~~~D~liv   69 (206)
T 3f5d_A            3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI----VSSI---GGFKTS------VDYIIGLEPANFNLLVM   69 (206)
T ss_dssp             CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE----EEBT---TSCEEE------CSEETTSSCSCCSEEEE
T ss_pred             ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC----EEec---CCcEEe------cCcChhhCCcCCCEEEE
Confidence            679999999999999999 888884443778888988765    3333   599999      998888875 4678999


Q ss_pred             cCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhc-------cCccCCCcEE
Q 026831          117 LGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLS-------DQSEIENRVV  189 (232)
Q Consensus       117 pGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~-------~~~~~d~~~v  189 (232)
                      |||. +.. . .++++++|||++++++++|++||+|+ ++||++|||+||++|+||..  .++       ...+.++.+|
T Consensus        70 pGG~-~~~-~-~~~~l~~~l~~~~~~gk~iaaiC~G~-~~La~aGLL~Gr~aTthw~~--~~~~~~~~~~~~~~~~~~~V  143 (206)
T 3f5d_A           70 IGGD-SWS-N-DNKKLLHFVKTAFQKNIPIAAICGAV-DFLAKNGLLNNHSHTGNFVY--LWKDYKQYKPISSFVEKQAV  143 (206)
T ss_dssp             CCBS-CCC-C-CCHHHHHHHHHHHHTTCCEEEETHHH-HHHHHTTTTTTSCBCCSCGG--GGTTCTTCCCSSCBCCSSEE
T ss_pred             cCCC-Chh-h-cCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHcCCCCCCEEEccCHH--HhhhhHhhcCCCeEccCCEE
Confidence            9997 344 3 89999999999999999999999996 78999999999999999942  232       1346788999


Q ss_pred             EcCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          190 VDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       190 ~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      +|||+|||+|+. ++|+++++|+++ |.+.|++|++.|++.
T Consensus       144 ~Dg~iiTs~G~a-~id~al~li~~l-~~~~a~~va~~~~~~  182 (206)
T 3f5d_A          144 RDKNLVTANGTA-PIEFTNLILEMI-DFDTPENIEKMMYMN  182 (206)
T ss_dssp             EETTEEEECTTC-HHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             EECCEEECCCch-HHHHHHHHHHHh-CcchHHHHHHHhhhh
Confidence            999999999986 999999999975 568999999999864

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=99.97  E-value=1.2e-31  Score=220.92  Aligned_cols=165  Identities=18%  Similarity=0.221  Sum_probs=143.2

Q ss_pred             CCCccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCC-ccccccccce-EEeeccCCccchhHHHh--hh
Q 026831           36 YRRLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQP-EEEEEEEEEV-RVIRKSEDNMSREFEKA--AR  110 (232)
Q Consensus        36 ~~~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~p-v~s~~~~~Gl-~v~~~~~~~~~~~~~~~--~~  110 (232)
                      +.++++|+||++|||+..|+. |...+ ...+..+.+++.+.+   + +.++   .|+ .+.      ++..++++  .+
T Consensus        20 ~~~~~kV~ill~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~~~---~~v~~~---~g~~~v~------~~~~l~~~~~~~   86 (193)
T 1oi4_A           20 AGLSKKIAVLITDEFEDSEFTSPADEF-RKAGHEVITIEKQAG---KTVKGK---KGEASVT------IDKSIDEVTPAE   86 (193)
T ss_dssp             TTCCCEEEEECCTTBCTHHHHHHHHHH-HHTTCEEEEEESSTT---CEEECT---TSSCEEE------CCEEGGGCCGGG
T ss_pred             hccCCEEEEEECCCCCHHHHHHHHHHH-HHCCCEEEEEECCCC---cceecC---CCCeEEE------CCCChHHCCccc
Confidence            355789999999999999998 88888 455788889998876   5 6654   488 888      88888876  35


Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcE
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRV  188 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~  188 (232)
                      .|.||||||. +...+..++.+.+||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++.  .+.++.+
T Consensus        87 ~D~livpGG~-~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~-~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~  164 (193)
T 1oi4_A           87 FDALLLPGGH-SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEV  164 (193)
T ss_dssp             CSEEEECCBT-HHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSC
T ss_pred             CCEEEECCCc-CHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCE
Confidence            6789999996 46666678999999999999999999999995 789999999999999999999999874  5677788


Q ss_pred             EEcCC-EEEcCChhhHHHHHHHHHHHhc
Q 026831          189 VVDGN-LITSRGPGTSMEFALAIVEKFF  215 (232)
Q Consensus       189 v~Dg~-~iTa~g~~a~~d~~l~lI~~~~  215 (232)
                      |+||| +|||+|+.+++|+++++|+++.
T Consensus       165 v~Dg~~iiTs~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          165 VVDKDQLVTSRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             EEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             EEECCEEEECCCcchHHHHHHHHHHHhh
Confidence            99999 9999999999999999999874

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.97  E-value=8.7e-33  Score=247.95  Aligned_cols=174  Identities=21%  Similarity=0.260  Sum_probs=151.6

Q ss_pred             CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCC-ccccccccce-EEeeccCCccchhHHHhh--hcc
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQP-EEEEEEEEEV-RVIRKSEDNMSREFEKAA--RRL  112 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~p-v~s~~~~~Gl-~v~~~~~~~~~~~~~~~~--~~d  112 (232)
                      ++++|+||++|||+++|+. |..++ ...+..+.+++.+++   + +.++   .|+ .+.      ++..+++++  +.|
T Consensus         9 ~mkkV~ILl~dgf~~~El~~p~dvL-~~Ag~~v~vvS~~~g---~~V~ss---~G~~~i~------~d~~l~~v~~~~~D   75 (365)
T 3fse_A            9 GKKKVAILIEQAVEDTEFIIPCNGL-KQAGFEVVVLGSRMN---EKYKGK---RGRLSTQ------ADGTTTEAIASEFD   75 (365)
T ss_dssp             --CEEEEECCTTBCHHHHHHHHHHH-HHTTCEEEEEESSSS---CCEECT---TSCCEEC------CSEETTTCCGGGCS
T ss_pred             CceEEEEEECCCCcHHHHHHHHHHH-HHCCCEEEEEECCCC---ceeecC---CCceEEe------CCCCHhhCCCcCCC
Confidence            4689999999999999999 88888 556788999999887   5 6654   499 999      888888874  467


Q ss_pred             ceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhcc--CccCCCcEEE
Q 026831          113 ENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSD--QSEIENRVVV  190 (232)
Q Consensus       113 ~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~--~~~~d~~~v~  190 (232)
                      .||||||. +...+..++.+.+||+++++++++|++||+|+ ++||++|||+||++|+||...+.|++  ..+.+..+|+
T Consensus        76 aLiVPGG~-g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~-~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~  153 (365)
T 3fse_A           76 AVVIPGGM-APDKMRRNPNTVRFVQEAMEQGKLVAAVCHGP-QVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVV  153 (365)
T ss_dssp             EEEECCBT-HHHHHTTCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEE
T ss_pred             EEEEECCc-chhhccCCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEE
Confidence            89999997 46566789999999999999999999999996 78999999999999999999999986  3567889999


Q ss_pred             cCCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHh
Q 026831          191 DGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKI  226 (232)
Q Consensus       191 Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~  226 (232)
                      |||+|||+|+.+++||++++|+++.|.+.|.++++.
T Consensus       154 DGniITs~G~~a~~d~al~lIe~L~g~~~A~~lA~~  189 (365)
T 3fse_A          154 DGNLITSREPGDLAIFTTAILSRLGYGGKDAALPDE  189 (365)
T ss_dssp             ETTEEEECSGGGHHHHHHHHHHHTTCCCSSSCCCCT
T ss_pred             ECCEEECCCHHHHHHHHHHHHHHhcCchHHHHHhhh
Confidence            999999999999999999999999998776665543

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.97  E-value=6.9e-31  Score=212.61  Aligned_cols=157  Identities=14%  Similarity=0.179  Sum_probs=135.1

Q ss_pred             ccEEEEEecC---C---cccccccchhhhccCCCceEEEEeccc-cccCCccccccccceEEeeccCCccchhHHHh---
Q 026831           39 LEVILTTVAP---G---YFRNHLMPKLLAVPNIEKFAHLIREQR-RIFQPEEEEEEEEEVRVIRKSEDNMSREFEKA---  108 (232)
Q Consensus        39 ~~~I~iLl~~---g---f~~~el~p~~~a~~~~~~~~~~v~~~~-~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~---  108 (232)
                      .++|+||++|   |   |+++|+.-      ..+..+.+++.+. .   ++.++   .|+++.      ++..++++   
T Consensus         2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~---~v~~~---~g~~v~------~d~~~~~~~~~   63 (175)
T 3cne_A            2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTK---EIKTN---SGMVLI------VDDVIANLKGH   63 (175)
T ss_dssp             CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSS---EEEBT---TSCEEE------CSEEGGGGTTC
T ss_pred             CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCC---ceecC---CCeEEE------eccCHHHhccC
Confidence            3689999999   9   88877762      3467788898874 4   66654   599999      88888876   


Q ss_pred             -hhccceeccCC--hhhHHhhh---cCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCc
Q 026831          109 -ARRLENARLGG--LGGAQAFA---KSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQS  182 (232)
Q Consensus       109 -~~~d~livpGg--~~~~~~~~---~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~  182 (232)
                       ++.|.||||||  .++...+.   .++++++|||++++++++|++||+|+ ++||++|||+||++|+||...+.|++..
T Consensus        64 ~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~-~~La~aGlL~G~~~T~~~~~~~~l~~~~  142 (175)
T 3cne_A           64 EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA-MMFDFTGITKGKKVAVHPLAKPAIQNGI  142 (175)
T ss_dssp             GGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHH-HHHHHTTTTTTCEEECCGGGGGGCCSSE
T ss_pred             cccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCCEEEeCccHHHHhhcCE
Confidence             56788999999  53344444   78999999999999999999999996 7899999999999999999999998877


Q ss_pred             cCCCcEEEcCCEEEcCChhhHHHHHHHHHHHh
Q 026831          183 EIENRVVVDGNLITSRGPGTSMEFALAIVEKF  214 (232)
Q Consensus       183 ~~d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~  214 (232)
                      +.++.+|+|||+|||+|+.+++|+++++|+++
T Consensus       143 ~~~~~~v~Dg~iiTs~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          143 ATDEKSEIDGNFFTAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             EESSSEEEETTEEEESSGGGGGGTHHHHHHHH
T ss_pred             EeCCCEEEeCCEEeCCChHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999986

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.96  E-value=6.4e-30  Score=214.57  Aligned_cols=167  Identities=23%  Similarity=0.257  Sum_probs=136.2

Q ss_pred             cEEEEEec----------CCccccccc-chhhhccCCCceEEEEeccccccCCccccccc-----cc-----eEEeeccC
Q 026831           40 EVILTTVA----------PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEE-----EE-----VRVIRKSE   98 (232)
Q Consensus        40 ~~I~iLl~----------~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~-----~G-----l~v~~~~~   98 (232)
                      ++|+||++          |||++.|++ |..++ ...+..+.+++.+++   ++.+...+     .|     +++.    
T Consensus         6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l-~~ag~~v~~vs~~~~---~v~~~~~~~~~~~~~~~~~~~~i~----   77 (224)
T 1u9c_A            6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVF-QEKGYDVKVASIQGG---EVPLDPRSINEKDPSWAEAEAALK----   77 (224)
T ss_dssp             CEEEEEECCCCEEETTEECCBCHHHHHHHHHHH-HHTTCEEEEEESSCB---CCCBCGGGSSSCCGGGHHHHHHTT----
T ss_pred             ceEEEEECCcccccCCCCCceeHHHHHHHHHHH-HHCCCeEEEECCCCC---ccccCccccccHHHHHhhhhHhhc----
Confidence            79999999          999999999 98888 456788899998876   54432100     13     4555    


Q ss_pred             CccchhHHHhh--hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC------CCCCCeeec
Q 026831           99 DNMSREFEKAA--RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG------LLKGKKATA  170 (232)
Q Consensus        99 ~~~~~~~~~~~--~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG------LL~g~~~T~  170 (232)
                        ++..+++++  +.|.||||||.+...++..++.+.+|||++++++++|++||+|+ ++|+++|      ||+||++|+
T Consensus        78 --~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~-~~La~ag~~~g~~lL~Gr~~T~  154 (224)
T 1u9c_A           78 --HTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGP-SGLVNATYKDGTPIVKGKTVTS  154 (224)
T ss_dssp             --SBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTSCBTTTTCEECC
T ss_pred             --CCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHH-HHHHHccccCCCceecCcEEec
Confidence              666777764  46779999997544457789999999999999999999999996 7899999      999999999


Q ss_pred             Cccchhh---------------hccC--ccCCC-----cEEEcCCEEEcCChhhHHHHHHHHHHHhcCH
Q 026831          171 FPAMCNK---------------LSDQ--SEIEN-----RVVVDGNLITSRGPGTSMEFALAIVEKFFGR  217 (232)
Q Consensus       171 h~~~~~~---------------~~~~--~~~d~-----~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~  217 (232)
                      ||...+.               |++.  .+.+.     .+|+|||+|||+|+.+++|+++++|+++.|+
T Consensus       155 ~~~~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~  223 (224)
T 1u9c_A          155 FTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  223 (224)
T ss_dssp             SCHHHHHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             CCCHHHhhccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence            9987664               4432  34444     4999999999999999999999999999885

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.95  E-value=6.5e-28  Score=218.49  Aligned_cols=171  Identities=19%  Similarity=0.264  Sum_probs=142.1

Q ss_pred             CCCccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCcc-------------ccccccceEEeeccCCcc
Q 026831           36 YRRLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEE-------------EEEEEEEVRVIRKSEDNM  101 (232)
Q Consensus        36 ~~~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~-------------s~~~~~Gl~v~~~~~~~~  101 (232)
                      |.++++|+||++|||++.|+. |.+.+ ...+..+.+++.+..   |..             ...++.|+.+.      +
T Consensus         9 m~~~~kv~ill~dg~e~~E~~~~~~~l-~~ag~~v~~vs~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~i~------~   78 (396)
T 3uk7_A            9 MANSRTVLILCGDYMEDYEVMVPFQAL-QAFGITVHTVCPGKK---AGDSCPTAVHDFCGHQTYFESRGHNFT------L   78 (396)
T ss_dssp             --CCCEEEEECCTTEEHHHHHHHHHHH-HHTTCEEEEECTTCC---TTCEECEEEEECSSSSSCEEEECCCEE------C
T ss_pred             hhcCCeEEEEeCCCccHHHHHHHHHHH-HHCCCEEEEEcCCCc---CCCcccccccccccchhhhhccCceee------c
Confidence            344689999999999999999 88888 566888888888754   211             01124588888      8


Q ss_pred             chhHHHh--hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhc
Q 026831          102 SREFEKA--ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLS  179 (232)
Q Consensus       102 ~~~~~~~--~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~  179 (232)
                      +..++++  ++.|.||||||.+ ...+..++.+.+||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|+
T Consensus        79 ~~~~~~~~~~~~D~livpGG~~-~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~  156 (396)
T 3uk7_A           79 NATFDEVDLSKYDGLVIPGGRA-PEYLALTASVVELVKEFSRSGKPIASICHGQ-LILAAADTVNGRKCTAYATVGPSLV  156 (396)
T ss_dssp             CSCGGGCCGGGCSEEEECCBSH-HHHHTTCHHHHHHHHHHHHTTCCEEEETTTH-HHHHHTTCCTTCEECCCGGGHHHHH
T ss_pred             cCChhhcCcccCCEEEECCCcc-hhhcccCHHHHHHHHHHHHcCCEEEEECchH-HHHHhccccCCCEeecCcchHHHHH
Confidence            8888886  4567899999974 5557789999999999999999999999996 7899999999999999999999998


Q ss_pred             cC--ccC----CCcEEEcCCEEEcCChhhHHHHHHHHHHHhcCHH
Q 026831          180 DQ--SEI----ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRN  218 (232)
Q Consensus       180 ~~--~~~----d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~~  218 (232)
                      +.  .+.    +..+|+|||+|||+|+.+++||++++|+++.|++
T Consensus       157 ~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~  201 (396)
T 3uk7_A          157 AAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKI  201 (396)
T ss_dssp             HTTCEECCCSSTTCEEEETTEEEESSGGGHHHHHHHHHHHTTCEE
T ss_pred             HCCCEEECCCCCcceEecCCEEEecCcccHHHHHHHHHHHHhccc
Confidence            63  232    3458999999999999999999999999999964

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.95  E-value=8.6e-28  Score=210.00  Aligned_cols=171  Identities=16%  Similarity=0.133  Sum_probs=138.2

Q ss_pred             ccEEEEEecC--------------Cccccccc-chhhhccCCCceEEEEeccccccCCccccc-----------ccc---
Q 026831           39 LEVILTTVAP--------------GYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEE-----------EEE---   89 (232)
Q Consensus        39 ~~~I~iLl~~--------------gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~-----------~~~---   89 (232)
                      .++|+|++.+              ||++.|++ |.+++ ...+..+.+++.+++   ++..+.           ...   
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL-~~ag~~v~i~S~~g~---~v~~d~~s~~~~~~~~~~~~~~~  123 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHL-HAAGFEFEVATISGL---MTKFEYWAMPHKDEKVMPFFEQH  123 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHH-HHTTCCEEEEESSSC---CCCBCGGGCCTTCTTHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHH-HHCCCEEEEEeCCCC---cccccccccccccHHHHHHHHhc
Confidence            4699999885              79999999 99888 556788899998876   433210           011   


Q ss_pred             ceEEeeccCCccchhHHHh-------hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc--
Q 026831           90 EVRVIRKSEDNMSREFEKA-------ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH--  160 (232)
Q Consensus        90 Gl~v~~~~~~~~~~~~~~~-------~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a--  160 (232)
                      |+.+.      ++..++++       .+.|.||||||.+..+.+..++.+.+|||++++++++|++||+|+ ++|+++  
T Consensus       124 g~~l~------~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp-~~La~a~~  196 (291)
T 1n57_A          124 KSLFR------NPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGP-AAFLALRH  196 (291)
T ss_dssp             HHHHH------SCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGGGGTT
T ss_pred             cceec------CCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccH-HHHHhhcc
Confidence            66666      77778773       346779999997534367789999999999999999999999997 567777  


Q ss_pred             --CCCCCCeeecCccchhhhcc---------------------CccC----CCcEEEcCCEEEcCChhhHHHHHHHHHHH
Q 026831          161 --GLLKGKKATAFPAMCNKLSD---------------------QSEI----ENRVVVDGNLITSRGPGTSMEFALAIVEK  213 (232)
Q Consensus       161 --GLL~g~~~T~h~~~~~~~~~---------------------~~~~----d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~  213 (232)
                        |||+||++|+||...+.+++                     ..+.    +..+|+|||+|||+|+.+++||+++||++
T Consensus       197 ~~GLL~Gr~~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~  276 (291)
T 1n57_A          197 GDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQE  276 (291)
T ss_dssp             SCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHH
T ss_pred             cCccCCCCEEEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHH
Confidence              59999999999998887642                     2344    78999999999999999999999999999


Q ss_pred             hcCHHHH
Q 026831          214 FFGRNKA  220 (232)
Q Consensus       214 ~~G~~~a  220 (232)
                      +.|.+..
T Consensus       277 l~g~~~~  283 (291)
T 1n57_A          277 MLAAYAG  283 (291)
T ss_dssp             HHHHHCC
T ss_pred             HhCchhh
Confidence            9987643

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.95  E-value=9.8e-28  Score=217.31  Aligned_cols=169  Identities=20%  Similarity=0.250  Sum_probs=141.1

Q ss_pred             CCccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCcc-------------ccccccceEEeeccCCccc
Q 026831           37 RRLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEE-------------EEEEEEEVRVIRKSEDNMS  102 (232)
Q Consensus        37 ~~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~-------------s~~~~~Gl~v~~~~~~~~~  102 (232)
                      ..+++|+||++|||++.|+. |.+.+ ...+..+.+++.+++   ++.             ...++.|..+.      ++
T Consensus       203 ~~~~ki~ill~dg~~~~e~~~~~~~l-~~ag~~v~~vs~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~i~------~~  272 (396)
T 3uk7_A          203 GANKRILFLCGDYMEDYEVKVPFQSL-QALGCQVDAVCPEKK---AGDRCPTAIHDFEGDQTYSEKPGHTFA------LT  272 (396)
T ss_dssp             CCCCEEEEECCTTEEHHHHHHHHHHH-HHHTCEEEEECTTCC---TTCEECEEEEECCSSSSCEEEECCCEE------CC
T ss_pred             hccceEEEEecCCCcchhHHHHHHHH-HHCCCEEEEECCCCC---CCcccccccccccccchhhhcCCceee------cc
Confidence            45689999999999999999 88887 455788889988765   210             01123588888      88


Q ss_pred             hhHHHhh--hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhcc
Q 026831          103 REFEKAA--RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSD  180 (232)
Q Consensus       103 ~~~~~~~--~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~  180 (232)
                      ..+++++  +.|.|+||||.+ ...+..++++++|||++++++++|++||+|+ ++||++|||+||++|+||...+.++.
T Consensus       273 ~~~~~~~~~~~D~livpGg~~-~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~-~~La~aGlL~g~~~T~~~~~~~~~~~  350 (396)
T 3uk7_A          273 TNFDDLVSSSYDALVIPGGRA-PEYLALNEHVLNIVKEFMNSEKPVASICHGQ-QILAAAGVLKGRKCTAYPAVKLNVVL  350 (396)
T ss_dssp             SCGGGCCGGGCSEEEECCBSH-HHHHTTCHHHHHHHHHHHHTTCCEEEEGGGH-HHHHHTTTTTTCEECCCGGGHHHHHH
T ss_pred             CCHHHCCcccCCEEEECCCcc-hhhhccCHHHHHHHHHHHHCCCEEEEEchHH-HHHHHcCCcCCCEEecCccHHHHHHH
Confidence            8888863  567899999974 5556789999999999999999999999996 78999999999999999999988875


Q ss_pred             C--ccCCC----cEEEcCCEEEcCChhhHHHHHHHHHHHhcCH
Q 026831          181 Q--SEIEN----RVVVDGNLITSRGPGTSMEFALAIVEKFFGR  217 (232)
Q Consensus       181 ~--~~~d~----~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G~  217 (232)
                      .  .+.+.    ++|+|||+|||+|+.+++||++++|+++.|.
T Consensus       351 ~~~~~~~~~~~~~~v~Dg~iiTs~g~~~~~d~~l~li~~l~~~  393 (396)
T 3uk7_A          351 GGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALLGIQ  393 (396)
T ss_dssp             TTCEECCCSSTTCEEEETTEEEESSGGGHHHHHHHHHHHHTCE
T ss_pred             CCCEEEcCCCceeEEEcCCEEECCCchhHHHHHHHHHHHhccc
Confidence            3  34443    5999999999999999999999999999874

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.94  E-value=2.3e-27  Score=202.05  Aligned_cols=168  Identities=14%  Similarity=0.211  Sum_probs=133.6

Q ss_pred             ccEEEEEec------------CCccccccc-chhhhccCCCceEEEEeccccccCCcc--cc----------------cc
Q 026831           39 LEVILTTVA------------PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEE--EE----------------EE   87 (232)
Q Consensus        39 ~~~I~iLl~------------~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~--s~----------------~~   87 (232)
                      +++|+|++.            +||++.|++ |.+++ ...+..+.+++.+++.  ++.  +.                ..
T Consensus         3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl-~~ag~~v~~~s~~g~~--~~d~~s~~~~~~~~~~~~~~~~~~~   79 (243)
T 1rw7_A            3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTF-RKEGFEVDFVSETGKF--GWDEHSLAKDFLNGQDETDFKNKDS   79 (243)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHH-HHTTCEEEEECSSSCC--CBCGGGGSTTTSCHHHHHHHHCTTS
T ss_pred             CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHH-HHCCCEEEEECCCCCC--CcCcccccccccChHHHHHHHhhhH
Confidence            468999996            799999999 99988 5568888889887761  121  10                00


Q ss_pred             ccceEEeeccCCccchhHHHh--hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC----
Q 026831           88 EEEVRVIRKSEDNMSREFEKA--ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG----  161 (232)
Q Consensus        88 ~~Gl~v~~~~~~~~~~~~~~~--~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG----  161 (232)
                      +.|+.+.      ++..++++  .+.|.||||||.+..+++..++.+.+|||++++++++|++||+|+ ++|+++|    
T Consensus        80 ~~g~~l~------~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~-~~La~ag~~~~  152 (243)
T 1rw7_A           80 DFNKTLA------KIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGP-AIFDGLTDKKT  152 (243)
T ss_dssp             HHHHHHH------TCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTT
T ss_pred             HHHhhhc------cCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCH-HHHHhcCcccC
Confidence            1255555      66677765  346789999998655667889999999999999999999999997 6899999    


Q ss_pred             ---CCCCCeeecCccchhh-------------------hcc--CccC------CCcEEEcCCEEEcCChhhHHHHHHHHH
Q 026831          162 ---LLKGKKATAFPAMCNK-------------------LSD--QSEI------ENRVVVDGNLITSRGPGTSMEFALAIV  211 (232)
Q Consensus       162 ---LL~g~~~T~h~~~~~~-------------------~~~--~~~~------d~~~v~Dg~~iTa~g~~a~~d~~l~lI  211 (232)
                         ||+||++|+||...+.                   +++  ..+.      +..+|+|||+|||+|+.+++|++++||
T Consensus       153 g~~lL~G~~~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv  232 (243)
T 1rw7_A          153 GRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSI  232 (243)
T ss_dssp             SSBTTTTCEECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHH
T ss_pred             CceeeCCcEEeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHH
Confidence               9999999999987665                   332  2344      789999999999999999999999999


Q ss_pred             HHhcC
Q 026831          212 EKFFG  216 (232)
Q Consensus       212 ~~~~G  216 (232)
                      +++..
T Consensus       233 ~~l~~  237 (243)
T 1rw7_A          233 DALKN  237 (243)
T ss_dssp             HCCC-
T ss_pred             HHHhh
Confidence            98754

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.93  E-value=8.3e-26  Score=192.82  Aligned_cols=170  Identities=15%  Similarity=0.204  Sum_probs=131.3

Q ss_pred             ccEEEEEec------------CCccccccc-chhhhccCCCceEEEEeccccccCCcccc-c-----------------c
Q 026831           39 LEVILTTVA------------PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEE-E-----------------E   87 (232)
Q Consensus        39 ~~~I~iLl~------------~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~-~-----------------~   87 (232)
                      +++|+|++.            +||+..|+. |++++ ...|..+.+++.++..  ++... .                 .
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l-~~aG~~V~iaS~~g~~--~~d~~s~~~~~~~~~~~~~~~~~~~   79 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTF-EKHGFEVDFVSETGGF--GWDEHYLPKSFIGGEDKMNFETKNS   79 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHH-HTTTCEEEEEESSSCC--CBCTTC-------------------
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHH-HHCCCEEEEEeCCCCC--CcCCccccccccCHHHHHHHHHhhH
Confidence            467887765            589999999 99998 6679999999987662  22110 0                 0


Q ss_pred             ccceEEeeccCCccchhHHHhh--hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc-----
Q 026831           88 EEEVRVIRKSEDNMSREFEKAA--RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH-----  160 (232)
Q Consensus        88 ~~Gl~v~~~~~~~~~~~~~~~~--~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a-----  160 (232)
                      +.+.++.      ++..++++.  +.|.||||||.+..+++..++.+.+||+++++++++|++||+|+ ++|+++     
T Consensus        80 ~~~~~l~------~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~-~~La~a~~~~~  152 (244)
T 3kkl_A           80 AFNKALA------RIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGP-LLFDGLIDIKT  152 (244)
T ss_dssp             -CHHHHH------TCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTT
T ss_pred             HHHHHhc------CCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhhcccc
Confidence            0122333      555666653  45779999998655678899999999999999999999999997 679998     


Q ss_pred             --CCCCCCeeecCccchhh-------------------hcc--CccCC------CcEEEcCCEEEcCChhhHHHHHHHHH
Q 026831          161 --GLLKGKKATAFPAMCNK-------------------LSD--QSEIE------NRVVVDGNLITSRGPGTSMEFALAIV  211 (232)
Q Consensus       161 --GLL~g~~~T~h~~~~~~-------------------~~~--~~~~d------~~~v~Dg~~iTa~g~~a~~d~~l~lI  211 (232)
                        |||+||++|+||..++.                   +++  ..+.+      ..+|+|||+||++|+.+++++++++|
T Consensus       153 g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv  232 (244)
T 3kkl_A          153 TRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAI  232 (244)
T ss_dssp             SSBTTTTCEECCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHH
T ss_pred             CCceeCCceecCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHH
Confidence              99999999999987543                   222  23333      68999999999999999999999999


Q ss_pred             HHhcCHH
Q 026831          212 EKFFGRN  218 (232)
Q Consensus       212 ~~~~G~~  218 (232)
                      +++.+-+
T Consensus       233 ~~l~~~~  239 (244)
T 3kkl_A          233 NALYSVE  239 (244)
T ss_dssp             HHHTC--
T ss_pred             HHHhhhh
Confidence            9998754

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.93  E-value=3e-26  Score=193.74  Aligned_cols=172  Identities=17%  Similarity=0.220  Sum_probs=130.5

Q ss_pred             ccEEEEEec-----CCccccccc-chhhhccCCCceEEEEecccccc---CC-----ccccccccceEEeeccCCccc--
Q 026831           39 LEVILTTVA-----PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIF---QP-----EEEEEEEEEVRVIRKSEDNMS--  102 (232)
Q Consensus        39 ~~~I~iLl~-----~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~---~p-----v~s~~~~~Gl~v~~~~~~~~~--  102 (232)
                      +++|+||++     |||++.|++ |.+++ ...+..+.+++.+++..   .+     +.+   +.|+.+.      ++  
T Consensus         6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l-~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~---~~g~~i~------~~~~   75 (232)
T 1vhq_A            6 MKKIGVILSGCGVYDGSEIHEAVLTLLAI-SRSGAQAVCFAPDKQQVDVINHLTGEAMTE---TRNVLIE------AARI   75 (232)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHH-HHTTCEEEEEECSSBCSCCBCTTTCCBCSC---CCBHHHH------HTTT
T ss_pred             CCeEEEEEccCCCCCCeeHHHHHHHHHHH-HHCCCEEEEEecCCCCCcccccccccchhh---hhhhhHH------HHHh
Confidence            468999999     999999999 98888 55678888898876510   11     122   3477665      44  


Q ss_pred             -----hhHHHh--hhccceeccCChhhHHhh----------hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCC-
Q 026831          103 -----REFEKA--ARRLENARLGGLGGAQAF----------AKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK-  164 (232)
Q Consensus       103 -----~~~~~~--~~~d~livpGg~~~~~~~----------~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~-  164 (232)
                           ..++++  .+.|.||||||.+....+          ..++.+.+|||+++++|++|++||+|+ ++|+++  |+ 
T Consensus        76 ~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~-~~La~a--L~~  152 (232)
T 1vhq_A           76 TRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP-AMLPKI--FDF  152 (232)
T ss_dssp             TTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGG-GGHHHH--CSS
T ss_pred             hhcCCCCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHH--hcC
Confidence                 566664  356789999997532211          248999999999999999999999996 679999  79 


Q ss_pred             CCeeecC-c-cchhhhccC--ccCC----CcEEE-cCCEEEcCChhhHHHHHHHHHHHhcCHHH-HHHHHHhh
Q 026831          165 GKKATAF-P-AMCNKLSDQ--SEIE----NRVVV-DGNLITSRGPGTSMEFALAIVEKFFGRNK-ALELAKIL  227 (232)
Q Consensus       165 g~~~T~h-~-~~~~~~~~~--~~~d----~~~v~-Dg~~iTa~g~~a~~d~~l~lI~~~~G~~~-a~~va~~l  227 (232)
                      ||++|+| | ...+.|++.  .+.+    ..+++ |||+|||+    ++|++++||++++|++. ++++.+++
T Consensus       153 Gr~~Tth~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~~~~~~~~~  221 (232)
T 1vhq_A          153 PLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKLVSRVLVLA  221 (232)
T ss_dssp             CCEECCCSCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEeccCCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHHHHHHHHHhh
Confidence            9999999 6 667788763  3433    34554 59999997    88999999999999964 45555543

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.92  E-value=4.5e-25  Score=188.55  Aligned_cols=168  Identities=17%  Similarity=0.187  Sum_probs=129.8

Q ss_pred             ccEEEEEecC------------Cccccccc-chhhhccCCCceEEEEeccccccCCcccc-cc-----------------
Q 026831           39 LEVILTTVAP------------GYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEE-EE-----------------   87 (232)
Q Consensus        39 ~~~I~iLl~~------------gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~-~~-----------------   87 (232)
                      +++|+|++..            ||++.|+. |++++ ...|..+.+++.+++.  ++... ..                 
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l-~~aG~~V~~aSp~g~~--~~d~~s~~~~~~~~~~~~~~~~~~~   85 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNEL-TAAGFEVDVASETGTF--GWDEHSLTQEYLSKEDEKVLHSEHN   85 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHH-HHTTCEEEEEESSSCC--CBCSGGGSGGGCCHHHHHHHTCSSC
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHH-HHCCCEEEEEeCCCCc--ccCcccccccccCHHHHHHHHhhhH
Confidence            5799999876            89999999 99998 6778999999987652  22111 00                 


Q ss_pred             ccceEEeeccCCcc-chhHHHhh--hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc----
Q 026831           88 EEEVRVIRKSEDNM-SREFEKAA--RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH----  160 (232)
Q Consensus        88 ~~Gl~v~~~~~~~~-~~~~~~~~--~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a----  160 (232)
                      ..+.++.      . +..++++.  +.|.||||||.+..+++..++.+.+||+++++++++|++||+|+ ++|+++    
T Consensus        86 ~~~~~l~------~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp-~~La~a~~~~  158 (247)
T 3n7t_A           86 HFMEKMN------KQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGP-AMLPGIHDEN  158 (247)
T ss_dssp             HHHHHHH------HCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGGGCBCTT
T ss_pred             HHHHHHh------ccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHHhhccc
Confidence            0011121      2 34555542  45779999998544667899999999999999999999999997 679999    


Q ss_pred             --CCCCCCeeecCccchhh-------------------hcc--CccCC------CcEEEcCCEEEcCChhhHHHHHHHHH
Q 026831          161 --GLLKGKKATAFPAMCNK-------------------LSD--QSEIE------NRVVVDGNLITSRGPGTSMEFALAIV  211 (232)
Q Consensus       161 --GLL~g~~~T~h~~~~~~-------------------~~~--~~~~d------~~~v~Dg~~iTa~g~~a~~d~~l~lI  211 (232)
                        |||+||++|+||..++.                   +++  ..+.+      ..+|+|||+||+.|+.+++++++++|
T Consensus       159 g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv  238 (247)
T 3n7t_A          159 GDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTI  238 (247)
T ss_dssp             SSBTTTTCEECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHH
T ss_pred             CCccccCceecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHH
Confidence              99999999999997654                   222  23333      58999999999999999999999999


Q ss_pred             HHhcC
Q 026831          212 EKFFG  216 (232)
Q Consensus       212 ~~~~G  216 (232)
                      +++.+
T Consensus       239 ~~L~~  243 (247)
T 3n7t_A          239 KVYEG  243 (247)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98865

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.89  E-value=1.3e-23  Score=179.01  Aligned_cols=165  Identities=15%  Similarity=0.085  Sum_probs=120.5

Q ss_pred             ccEEEEEec-----CCccccccc-chhhhccCCCceEEEEeccccccC--------CccccccccceEEeeccCCccc--
Q 026831           39 LEVILTTVA-----PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQ--------PEEEEEEEEEVRVIRKSEDNMS--  102 (232)
Q Consensus        39 ~~~I~iLl~-----~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~--------pv~s~~~~~Gl~v~~~~~~~~~--  102 (232)
                      +++|+||+.     |||++.|++ |.+++ ...+..+.+++.+++...        ++.+   +.|+.+.      ++  
T Consensus        23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL-~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~---s~g~~v~------~d~~   92 (242)
T 3l3b_A           23 ALNSAVILAGCGHMDGSEIREAVLVMLEL-DRHNVNFKCFAPNKNQKQVVDHKKKESVGE---VRNILVE------SARI   92 (242)
T ss_dssp             -CEEEEECCCSSTTTSCCHHHHHHHHHHH-HHTTCEEEEEECSSBCSCEEETTTTEEESC---CCBHHHH------HHHH
T ss_pred             cCEEEEEEecCCCCCCeeHHHHHHHHHHH-HHCCCEEEEEecCCCcccccccccCccccc---cCCeEEe------cchh
Confidence            479999997     999999999 99988 566888899998765110        1211   2355555      44  


Q ss_pred             -----hhHHHh--hhccceeccCChhhHH---h--------hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC-CC
Q 026831          103 -----REFEKA--ARRLENARLGGLGGAQ---A--------FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG-LL  163 (232)
Q Consensus       103 -----~~~~~~--~~~d~livpGg~~~~~---~--------~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG-LL  163 (232)
                           ..++++  .+.|.||||||.+...   +        ...++.+.+|||++++++++|++||+|+ ++|+++| ||
T Consensus        93 ~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~-~~La~ag~lL  171 (242)
T 3l3b_A           93 ARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISP-AVVVALLKDI  171 (242)
T ss_dssp             TTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHH-HHHHHHHTTT
T ss_pred             ccccCCChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhCccc
Confidence                 457765  2467799999975322   1        2468999999999999999999999996 7799999 99


Q ss_pred             CCCeeecCccchhhhcc--CccCC---CcEEEc--CCEEEcCChhhHHHHHHHHHHHhcCHH
Q 026831          164 KGKKATAFPAMCNKLSD--QSEIE---NRVVVD--GNLITSRGPGTSMEFALAIVEKFFGRN  218 (232)
Q Consensus       164 ~g~~~T~h~~~~~~~~~--~~~~d---~~~v~D--g~~iTa~g~~a~~d~~l~lI~~~~G~~  218 (232)
                      +||++|+||.....+++  ..+.+   ..+|+|  ||+||+.+...    +..+.+...|.+
T Consensus       172 ~Gr~~T~~~~~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~----~~~~~e~~~g~~  229 (242)
T 3l3b_A          172 AKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMR----NDSLYNVYLGIQ  229 (242)
T ss_dssp             CCCEECCCC----CHHHHTCEECCCCTTCCEEETTTTEEEECGGGS----CCCHHHHHHHHH
T ss_pred             CCCEEEecCChHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCccc----CCCHHHHHhCHH
Confidence            99999999988776665  34554   578888  99999997653    334555555543

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.72  E-value=6.6e-18  Score=162.29  Aligned_cols=148  Identities=12%  Similarity=0.054  Sum_probs=119.5

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hcccee
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENA  115 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~li  115 (232)
                      .++|+||++|||+..|+. |..++ ...+..+.+++.+++   ++.++   .|+.+.      ++..+++++  ..|.||
T Consensus       534 ~rkVaILl~dGfe~~El~~p~dvL-~~AG~~V~ivS~~gg---~V~ss---~G~~v~------~d~~l~~v~~~~yDaVi  600 (715)
T 1sy7_A          534 SRRVAIIIADGYDNVAYDAAYAAI-SANQAIPLVIGPRRS---KVTAA---NGSTVQ------PHHHLEGFRSTMVDAIF  600 (715)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHH-HHTTCEEEEEESCSS---CEEBT---TSCEEC------CSEETTTCCGGGSSEEE
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHH-HhcCCEEEEEECCCC---ceecC---CCceEe------cccccccCCcccCCEEE
Confidence            479999999999999999 88888 555788999998887   66654   499988      888887753  467899


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc-CCCCCCeeecCccchhhhccCccCCCcEEEcCCE
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH-GLLKGKKATAFPAMCNKLSDQSEIENRVVVDGNL  194 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a-GLL~g~~~T~h~~~~~~~~~~~~~d~~~v~Dg~~  194 (232)
                      ||||..+...+..++++++||+++++++++|++||+|+ ++|+++ ||.+-+.+.               ...+|+||++
T Consensus       601 VPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~-~lLA~AlGL~~L~~aG---------------a~~VVvDg~l  664 (715)
T 1sy7_A          601 IPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAV-DLVAKAIALPQVTVSS---------------EAEVHESYGV  664 (715)
T ss_dssp             ECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHHHCCTTSCCCC---------------SSSCEEETTE
T ss_pred             EcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHH-HHHHHccCcHhHHhcC---------------CCcEEEeCCE
Confidence            99996456667789999999999999999999999996 789999 984322211               2678999999


Q ss_pred             EEcCChh------------hHHHHHHHHHHHhc
Q 026831          195 ITSRGPG------------TSMEFALAIVEKFF  215 (232)
Q Consensus       195 iTa~g~~------------a~~d~~l~lI~~~~  215 (232)
                      ||+.|+.            +..+++..+++.+.
T Consensus       665 ITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~  697 (715)
T 1sy7_A          665 VTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIA  697 (715)
T ss_dssp             EEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHH
T ss_pred             EECCCCcccccccccccccCHHHHHHHHHHHHH
Confidence            9999985            45667777777663

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.48  E-value=2.9e-14  Score=136.48  Aligned_cols=110  Identities=9%  Similarity=-0.006  Sum_probs=94.9

Q ss_pred             CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhh--ccce
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAAR--RLEN  114 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~--~d~l  114 (232)
                      +.++|+||+.|||++.|+. |...+ ...|..+.+++.+.+   ++.++   .|+.+.      ++..|++++.  .|.|
T Consensus       599 ~grKVaILlaDGfEe~El~~pvdaL-r~AG~~V~vVS~~~g---~V~gs---~G~~V~------aD~t~~~v~s~~fDAL  665 (753)
T 3ttv_A          599 KGRVVAILLNDEVRSADLLAILKAL-KAKGVHAKLLYSRMG---EVTAD---DGTVLP------IAATFAGAPSLTVDAV  665 (753)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHH-HHHTCEEEEEESSSS---EEECT---TSCEEE------CCEETTTSCGGGCSEE
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHH-HHCCCEEEEEEcCCC---eEEeC---CCCEEe------cccchhhCCCcCCCEE
Confidence            3479999999999999999 77777 556888999999876   66665   499999      9999998753  6779


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCC
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLL  163 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL  163 (232)
                      |||||  +...+..++++++||+++++++|+|++||+|+ .+|+++||-
T Consensus       666 VVPGG--g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp-~lLa~AGL~  711 (753)
T 3ttv_A          666 IVPCG--NIADIADNGDANYYLMEAYKHLKPIALAGDAR-KFKATIKIA  711 (753)
T ss_dssp             EECCS--CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGG-GGGGGGTCC
T ss_pred             EECCC--ChHHhhhCHHHHHHHHHHHhcCCeEEEECchH-HHHHHcCCC
Confidence            99999  36668899999999999999999999999997 679999983

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.06  E-value=1.5e-10  Score=110.42  Aligned_cols=103  Identities=10%  Similarity=0.033  Sum_probs=83.0

Q ss_pred             ccEEEEEec--CCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hccc
Q 026831           39 LEVILTTVA--PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLE  113 (232)
Q Consensus        39 ~~~I~iLl~--~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~  113 (232)
                      .++|+||+.  +||+..|+. |...+ ...|..+.+|+.+.+   .            .      +|..|++.+  ..|.
T Consensus       529 g~kVaIL~a~~dGfe~~E~~~~~~~L-~~aG~~V~vVs~~~g---~------------~------vD~t~~~~~s~~fDA  586 (688)
T 2iuf_A          529 GLKVGLLASVNKPASIAQGAKLQVAL-SSVGVDVVVVAERXA---N------------N------VDETYSASDAVQFDA  586 (688)
T ss_dssp             TCEEEEECCTTCHHHHHHHHHHHHHH-GGGTCEEEEEESSCC---T------------T------CCEESTTCCGGGCSE
T ss_pred             CCEEEEEecCCCCCcHHHHHHHHHHH-HHCCCEEEEEeccCC---c------------c------cccchhcCCccccCe
Confidence            479999999  999999998 77777 667888888887543   1            1      455565542  4567


Q ss_pred             eeccCChhh----------------HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCC
Q 026831          114 NARLGGLGG----------------AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK  164 (232)
Q Consensus       114 livpGg~~~----------------~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~  164 (232)
                      ||||||..+                ...+..+++++.||+++++.||+|++||+|++ +|.++|+..
T Consensus       587 VvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~~aGi~~  652 (688)
T 2iuf_A          587 VVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSD-ALESGQISS  652 (688)
T ss_dssp             EEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHHHTTCCT
T ss_pred             EEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHH-HHHHcCCCC
Confidence            999999655                45577899999999999999999999999985 699999854

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=98.85  E-value=1.9e-09  Score=102.66  Aligned_cols=103  Identities=10%  Similarity=-0.018  Sum_probs=81.6

Q ss_pred             CccEEEEEecCC-ccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hccc
Q 026831           38 RLEVILTTVAPG-YFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLE  113 (232)
Q Consensus        38 ~~~~I~iLl~~g-f~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~  113 (232)
                      ..++|+||+.|| |+..|+. |...+ ...|..+.+|+.+.+           .|          ++..|++++  ..|.
T Consensus       536 ~grKVaILvadG~fE~~El~~p~~aL-~~aGa~V~vVsp~~g-----------~G----------vD~t~~~~~s~~fDA  593 (688)
T 3ej6_A          536 ATLRVGVLSTTKGGSLDKAKALKEQL-EKDGLKVTVIAEYLA-----------SG----------VDQTYSAADATAFDA  593 (688)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHHHH-HHTTCEEEEEESSCC-----------TT----------CCEETTTCCGGGCSE
T ss_pred             cCCEEEEEccCCCccHHHHHHHHHHH-HHCCCEEEEEeCCCC-----------CC----------cccCcccCChhcCcE
Confidence            358999999999 9999998 77777 677888888887653           03          344455543  3566


Q ss_pred             eeccCChhhH-------HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCC
Q 026831          114 NARLGGLGGA-------QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLL  163 (232)
Q Consensus       114 livpGg~~~~-------~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL  163 (232)
                      |+||||..+.       ..+..+++++.|++++++++|+|++||+|+ .+|.++|+-
T Consensus       594 VvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp-~lL~~AGI~  649 (688)
T 3ej6_A          594 VVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAK-KALQSIGVE  649 (688)
T ss_dssp             EEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGH-HHHHHTTCC
T ss_pred             EEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccH-HHHHHcCCC
Confidence            9999996432       457789999999999999999999999997 569999984

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=98.50  E-value=1.9e-08  Score=82.58  Aligned_cols=57  Identities=26%  Similarity=0.246  Sum_probs=44.5

Q ss_pred             hccceeccCChhhHHh-----hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCe
Q 026831          110 RRLENARLGGLGGAQA-----FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK  167 (232)
Q Consensus       110 ~~d~livpGg~~~~~~-----~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~  167 (232)
                      ..|.||||||......     ...++.+.+||+++.+++++|.+||.|. .+|+++|+|+|+-
T Consensus        41 ~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~-qlLa~aGll~g~v  102 (213)
T 3d54_D           41 DYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGF-QILIEMGLLKGAL  102 (213)
T ss_dssp             SCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHH-HHHHHHTSSCSEE
T ss_pred             cCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCCe
Confidence            4566999999632221     1235678999999999999999999995 7899999999853

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.14  E-value=0.00067  Score=55.99  Aligned_cols=54  Identities=17%  Similarity=0.140  Sum_probs=40.3

Q ss_pred             HHhhhccceeccCChhhHH-hhhcC--HHHHHHHHHHHhC-CCcEEEEcchhHHhhhhc
Q 026831          106 EKAARRLENARLGGLGGAQ-AFAKS--EKLVNMLKKQKES-NRPYGAICASPALVLEPH  160 (232)
Q Consensus       106 ~~~~~~d~livpGg~~~~~-~~~~~--~~l~~~Lr~~~~~-g~~v~aic~G~~~lLA~a  160 (232)
                      ++++..|.||+|||..... ....+  ..+.++|+++.+. +++|.+||.|. .+|+++
T Consensus        39 ~~l~~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~-QlL~~~   96 (227)
T 2abw_A           39 HDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGC-ILLSKN   96 (227)
T ss_dssp             HHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHH-HHTEEE
T ss_pred             cccccCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHH-HHHHHH
Confidence            3455678899999963222 22233  5689999999999 99999999995 678865

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=97.07  E-value=0.00031  Score=56.64  Aligned_cols=52  Identities=13%  Similarity=0.185  Sum_probs=37.8

Q ss_pred             hhhccceeccCChhhHHh-hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          108 AARRLENARLGGLGGAQA-FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~~-~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .++.|.|++|||.....+ +..+..+.++|+++.++++++.+||.|. .+|+.+
T Consensus        36 l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~-q~l~~~   88 (196)
T 2nv0_A           36 LNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGL-IILAKE   88 (196)
T ss_dssp             GGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHH-HHHSBC
T ss_pred             HhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHH-HHHHHH
Confidence            345677999999643321 2223455789999999999999999996 668863

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=96.95  E-value=0.00037  Score=56.88  Aligned_cols=51  Identities=18%  Similarity=0.130  Sum_probs=37.0

Q ss_pred             hhccceeccCChhhHHh-hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          109 ARRLENARLGGLGGAQA-FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       109 ~~~d~livpGg~~~~~~-~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ++.|.|++|||.+.... +..+..+.++|+++.++++++.+||.|. .+|+.+
T Consensus        56 ~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~-QlL~~~  107 (208)
T 2iss_D           56 DMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGV-ILLAKR  107 (208)
T ss_dssp             GGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHH-HHHEEE
T ss_pred             hhCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHH-HHHHHH
Confidence            35677999999642221 1223346789999999999999999995 668864

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=96.94  E-value=0.00037  Score=57.38  Aligned_cols=51  Identities=18%  Similarity=0.183  Sum_probs=37.6

Q ss_pred             hhccceeccCChhhHH-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          109 ARRLENARLGGLGGAQ-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       109 ~~~d~livpGg~~~~~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +..|.|++|||..... .+..+..+.++|+++.+++++|.+||.|. .+|+.+
T Consensus        59 ~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~-QlL~~~  110 (219)
T 1q7r_A           59 EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGL-ILLAKR  110 (219)
T ss_dssp             TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHH-HHHEEE
T ss_pred             hhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHH-HHHHHH
Confidence            3567799999964322 22234456799999999999999999996 668864

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=96.86  E-value=0.0012  Score=67.45  Aligned_cols=100  Identities=8%  Similarity=-0.046  Sum_probs=64.4

Q ss_pred             CccEEEEEecCCccc-cccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhhcccee
Q 026831           38 RLEVILTTVAPGYFR-NHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAARRLENA  115 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~-~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~~d~li  115 (232)
                      ..++|+|+.|||... .++. .+..+    |.....+....-     .+                ..   +.+...|.|+
T Consensus      1046 ~~pkVaIi~~~G~N~~~~~~~A~~~a----G~~~~~v~~~dl-----~~----------------~~---~~l~~~d~lv 1097 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVNSHVEMAAAFHRA----GFDAIDVHMSDL-----LG----------------GR---IGLGNFHALV 1097 (1303)
T ss_dssp             CCCEEEEEECTTCCCHHHHHHHHHHT----TCEEEEEEHHHH-----HT----------------TS---CCGGGCSEEE
T ss_pred             CCCEEEEEecCCcCCHHHHHHHHHHh----CCceEEEeeccc-----cc----------------Cc---ccHhhCCEEE
Confidence            356999999999886 6766 43333    443333221000     00                00   0122456699


Q ss_pred             ccCChhhHH----------hhhcCHHHHHHHHHHH-hCCCcEEEEcchhHHhhhhc-CCCCCC
Q 026831          116 RLGGLGGAQ----------AFAKSEKLVNMLKKQK-ESNRPYGAICASPALVLEPH-GLLKGK  166 (232)
Q Consensus       116 vpGg~~~~~----------~~~~~~~l~~~Lr~~~-~~g~~v~aic~G~~~lLA~a-GLL~g~  166 (232)
                      +|||...-+          ....++.+.+.|+++. ++++++.+||.|. .+|.++ |||.|.
T Consensus      1098 lPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~-QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1098 ACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGC-QMMSNLRELIPGS 1159 (1303)
T ss_dssp             ECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHH-HHHHTTGGGSTTC
T ss_pred             ECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHH-HHHHHhcCcCCCC
Confidence            999952111          1345678888898865 6899999999995 779998 999986

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.52  E-value=0.0011  Score=52.92  Aligned_cols=51  Identities=16%  Similarity=0.145  Sum_probs=37.1

Q ss_pred             hhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCC-CcEEEEcchhHHhhhhc
Q 026831          109 ARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESN-RPYGAICASPALVLEPH  160 (232)
Q Consensus       109 ~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g-~~v~aic~G~~~lLA~a  160 (232)
                      +..|.|++|||.+. ...+..+..+.++|+++.+++ ++|.+||.|. .+|+.+
T Consensus        38 ~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~-Q~l~~~   90 (191)
T 2ywd_A           38 EGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGA-IWLAKE   90 (191)
T ss_dssp             TTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHH-HHHEEE
T ss_pred             ccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHH-HHHHHH
Confidence            34577999999532 222222345788999999899 9999999995 678864

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=96.32  E-value=0.0019  Score=52.38  Aligned_cols=53  Identities=15%  Similarity=0.050  Sum_probs=36.0

Q ss_pred             HHhhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          106 EKAARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       106 ~~~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +++...|.||+||+. ...+....-+...+++...+.++|+.+||-|. .+|+++
T Consensus        36 ~~l~~~D~lilPG~g-~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~-QlL~~~   88 (211)
T 4gud_A           36 QVVLAADKLFLPGVG-TASEAMKNLTERDLIELVKRVEKPLLGICLGM-QLLGKL   88 (211)
T ss_dssp             HHHHHCSEEEECCCS-CHHHHHHHHHHTTCHHHHHHCCSCEEEETHHH-HTTSSE
T ss_pred             HHHhCCCEEEECCCC-CHHHHHHHHHhcChHHHHHHcCCCEEEEchhH-hHHHHH
Confidence            445556789999963 23333333344456777888999999999995 678754

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=95.89  E-value=0.0026  Score=51.30  Aligned_cols=50  Identities=20%  Similarity=0.191  Sum_probs=35.6

Q ss_pred             hccceeccC-ChhhHH-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLG-GLGGAQ-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpG-g~~~~~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|++|| |..... ....+..+.++|+++.++++++.+||.|. .+|+.+
T Consensus        40 ~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~-Qll~~~   91 (200)
T 1ka9_H           40 EADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGM-QVLYEG   91 (200)
T ss_dssp             SCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHH-HTTSSE
T ss_pred             cCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHH-HHHHHh
Confidence            456688899 432111 11223457899999999999999999995 679987

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=95.88  E-value=0.0059  Score=50.66  Aligned_cols=50  Identities=14%  Similarity=0.182  Sum_probs=36.5

Q ss_pred             hccceeccCChhhHHhhhcC------HHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKS------EKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~------~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|||+||..++.....+      ....++|+++.+.+++|.+||-|. .+|+.+
T Consensus        45 ~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~-QlL~~~  100 (236)
T 3l7n_A           45 DFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGA-QLMGVA  100 (236)
T ss_dssp             GCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHH-HHHHHH
T ss_pred             ccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHH-HHHHHH
Confidence            45679999986432211111      457899999999999999999995 668865

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=95.78  E-value=0.0088  Score=48.92  Aligned_cols=53  Identities=13%  Similarity=0.029  Sum_probs=39.4

Q ss_pred             HHhhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          106 EKAARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       106 ~~~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +.+...|.|++|||... .-.......+.+.|++..++|+++.++|.|+ .+|++
T Consensus        75 ~~l~~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa-~~l~~  128 (206)
T 3l4e_A           75 TKLRKNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGA-VITSP  128 (206)
T ss_dssp             HHHHHSSEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHH-HTTSS
T ss_pred             HHHHhCCEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHH-HHhcc
Confidence            34556788999999631 1123356678899999999999999999995 55763

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=95.62  E-value=0.0071  Score=50.16  Aligned_cols=53  Identities=11%  Similarity=-0.015  Sum_probs=39.0

Q ss_pred             HHhhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          106 EKAARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       106 ~~~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +.+...|.||+|||... .........+.+.|++..++|+++.++|.|+ .+|++
T Consensus        75 ~~l~~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~-~~l~~  128 (229)
T 1fy2_A           75 AAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGA-NLACP  128 (229)
T ss_dssp             HHHHHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHH-HHTSS
T ss_pred             HHHhcCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHH-Hhhcc
Confidence            55556788999999631 1122344568889999999999999999995 56765

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=95.42  E-value=0.0093  Score=47.53  Aligned_cols=45  Identities=18%  Similarity=0.198  Sum_probs=34.4

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.|++|||. .+.   ......++|+++.+.++++.+||.|. .+|+.+
T Consensus        44 ~dglil~Gg~-~~~---~~~~~~~~i~~~~~~~~PilGIC~G~-Q~l~~~   88 (189)
T 1wl8_A           44 PKGIIFSGGP-SLE---NTGNCEKVLEHYDEFNVPILGICLGH-QLIAKF   88 (189)
T ss_dssp             CSEEEECCCS-CTT---CCTTHHHHHHTGGGTCSCEEEETHHH-HHHHHH
T ss_pred             CCEEEECCCC-Chh---hhhhHHHHHHHHhhCCCeEEEEcHHH-HHHHHH
Confidence            6779999995 332   24456888987778899999999996 668754

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=95.23  E-value=0.0088  Score=49.83  Aligned_cols=50  Identities=18%  Similarity=0.186  Sum_probs=35.9

Q ss_pred             hccceeccCChhhHHhh---hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAF---AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~---~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.||+|||..+....   ..-....++|+++.++++++.+||-|. .+|+.+
T Consensus        57 ~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~-QlL~~a  109 (239)
T 1o1y_A           57 EYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGS-QMLAKV  109 (239)
T ss_dssp             GCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHH-HHHHHH
T ss_pred             cCCEEEECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhH-HHHHHH
Confidence            45779999985332211   111367899999988899999999995 678864

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=95.04  E-value=0.022  Score=48.87  Aligned_cols=47  Identities=9%  Similarity=0.049  Sum_probs=36.9

Q ss_pred             hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +...|.||+|||.+. .   ..+...++|+++.+.+++|.+||.|. .+|+.
T Consensus        88 l~~~dgiil~GG~~~-~---~~~~~~~~i~~~~~~~~PilGIC~G~-Q~l~~  134 (289)
T 2v4u_A           88 LCKADGILVPGGFGI-R---GTLGKLQAISWARTKKIPFLGVXLGM-QLAVI  134 (289)
T ss_dssp             HHHCSEEEECSCCSS-T---THHHHHHHHHHHHHTTCCEEEETHHH-HHHHH
T ss_pred             HhhCCEEEecCCCCc-h---hHHHHHHHHHHHHHcCCcEEEECccH-HHHHH
Confidence            345677999999642 2   22578899999999999999999995 66875

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=94.97  E-value=0.014  Score=49.14  Aligned_cols=50  Identities=16%  Similarity=0.174  Sum_probs=36.3

Q ss_pred             hccceeccCChhhHHh-hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQA-FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~-~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +.|.||||||..+..+ ...-....++|+++.+.++++.+||.|. .+|+.+
T Consensus        48 ~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~-Qll~~~   98 (250)
T 3m3p_A           48 DCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGG-QLLAKA   98 (250)
T ss_dssp             GSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHH-HHHHHH
T ss_pred             cCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHH-HHHHHH
Confidence            4566999998532221 1122467899999988999999999995 668865

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=94.86  E-value=0.02  Score=45.41  Aligned_cols=47  Identities=26%  Similarity=0.227  Sum_probs=30.9

Q ss_pred             hccceeccCChhhHHh-hhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQA-FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~-~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|++|||...... ......+.++|+   +.++++.+||.|. .+|+.+
T Consensus        37 ~~dglil~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G~-Qll~~~   84 (186)
T 2ywj_A           37 GIDALIIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAGM-VLLSKG   84 (186)
T ss_dssp             TCSEEEECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHHH-HHHSSC
T ss_pred             cCCEEEECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHHH-HHHHHH
Confidence            4577999999632221 111122455665   7899999999995 678876

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=94.82  E-value=0.015  Score=46.68  Aligned_cols=48  Identities=10%  Similarity=0.054  Sum_probs=31.9

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.|+++||.+........+...++|+++ +.++++.+||-|. .+|+.+
T Consensus        46 ~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~~PvLGIC~G~-QlL~~~   93 (195)
T 1qdl_B           46 PDRLIISPGPGTPEKREDIGVSLDVIKYL-GKRTPILGVCLGH-QAIGYA   93 (195)
T ss_dssp             CSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTTSCEEEETHHH-HHHHHH
T ss_pred             CCEEEECCCCCChhhhhhhhHHHHHHHHh-cCCCcEEEEehHH-HHHHHH
Confidence            56789977743222111112346888875 7899999999995 668865

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=94.68  E-value=0.017  Score=46.39  Aligned_cols=50  Identities=14%  Similarity=0.030  Sum_probs=34.7

Q ss_pred             hccceeccCChhhHHhh---hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcC
Q 026831          110 RRLENARLGGLGGAQAF---AKSEKLVNMLKKQKESNRPYGAICASPALVLEPHG  161 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~---~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aG  161 (232)
                      ..|.|++||+. .....   ..+..+.++|+++.+++++|.+||.|. .+|+.+.
T Consensus        42 ~~dglilpG~g-~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~-Qll~~~~   94 (201)
T 1gpw_B           42 LYDLLFIPGVG-HFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGM-QLLFEES   94 (201)
T ss_dssp             CCSEEEECCCS-CSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHH-HTTSSEE
T ss_pred             CCCEEEECCCC-cHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhH-HHHHHhh
Confidence            45668889953 21111   111237789999988999999999995 6788763

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=94.39  E-value=0.033  Score=46.67  Aligned_cols=51  Identities=14%  Similarity=0.148  Sum_probs=37.0

Q ss_pred             hhccceeccCChh-hHH-------------hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          109 ARRLENARLGGLG-GAQ-------------AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       109 ~~~d~livpGg~~-~~~-------------~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ...|.|+++||.. .+.             +..+|...+++||++.++++++.+||-|. .+|+.+
T Consensus        60 ~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~-Qll~~a  124 (254)
T 3fij_A           60 SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGM-QLVNVA  124 (254)
T ss_dssp             HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHH-HHHHHH
T ss_pred             hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHH-HHHHHH
Confidence            3567899999941 011             11234557899999999999999999995 668865

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=93.68  E-value=0.032  Score=45.47  Aligned_cols=47  Identities=17%  Similarity=0.188  Sum_probs=31.2

Q ss_pred             hccceeccCC-hhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGG-LGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg-~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +.|.||+||| .+........+.+.+++   .+.++++.+||-|. .+|+.+
T Consensus        54 ~~DglIl~GG~p~~~~~~~~~~~l~~~~---~~~~~PiLGIC~G~-Qll~~~  101 (212)
T 2a9v_A           54 GLDGLVLSGGAPNIDEELDKLGSVGKYI---DDHNYPILGICVGA-QFIALH  101 (212)
T ss_dssp             TCSEEEEEEECSCGGGTGGGHHHHHHHH---HHCCSCEEEETHHH-HHHHHH
T ss_pred             CCCEEEECCCCCCCCcccccchhHHHHH---HhCCCCEEEEChHH-HHHHHH
Confidence            3677999999 43333222234455554   46799999999995 668864

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=93.43  E-value=0.07  Score=47.62  Aligned_cols=46  Identities=20%  Similarity=0.183  Sum_probs=36.8

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|-||++||.+++   ..+...+++||++.++++|+.+||-|. .+|+.+
T Consensus       232 ~DGliLsGGPgdp---~~~~~~~~~Ir~~~~~~~PILGIClG~-QLLa~A  277 (379)
T 1a9x_B          232 PDGIFLSNGPGDP---APCDYAITAIQKFLETDIPVFGICLGH-QLLALA  277 (379)
T ss_dssp             CSEEEECCCSBCS---TTCHHHHHHHHHHTTSCCCEEEETHHH-HHHHHH
T ss_pred             CCEEEEeCCCCCh---HHHHHHHHHHHHHHHcCCCEEEECchH-HHHHHH
Confidence            5779999985432   245788899999998899999999995 678854

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=93.32  E-value=0.068  Score=45.32  Aligned_cols=47  Identities=15%  Similarity=0.056  Sum_probs=35.5

Q ss_pred             hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +...|.|++|||.+ ..   ..+...++++.+.+.++|+.+||-|. .+|+.
T Consensus        65 ~~~~dgiil~GG~~-~~---~~~~~~~~i~~~~~~~~PilGIC~G~-Qll~~  111 (273)
T 2w7t_A           65 LLGCDGIFVPGGFG-NR---GVDGKCAAAQVARMNNIPYFGVXLGM-QVAVI  111 (273)
T ss_dssp             HHTCSEEEECCCCT-TT---THHHHHHHHHHHHHHTCCEEEETHHH-HHHHH
T ss_pred             HhhCCEEEecCCCC-Cc---CchhHHHHHHHHHHCCCcEEEECcCH-HHHHH
Confidence            34567799999964 22   23457788998888899999999995 56764

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=92.42  E-value=0.18  Score=43.62  Aligned_cols=50  Identities=12%  Similarity=-0.039  Sum_probs=32.8

Q ss_pred             hccceeccCChhhHHhh---hcCHHHHHHHHHHHhCC--CcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAF---AKSEKLVNMLKKQKESN--RPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~---~~~~~l~~~Lr~~~~~g--~~v~aic~G~~~lLA~a  160 (232)
                      ..|.||+|||..+....   .....+.+++++..++|  ++|.+||-|. .+|+.+
T Consensus        86 ~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~-Qll~~a  140 (315)
T 1l9x_A           86 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF-EELSLL  140 (315)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH-HHHHHH
T ss_pred             cCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH-HHHHHH
Confidence            46779999995332111   01135677777776654  9999999995 667743

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=89.60  E-value=0.16  Score=47.07  Aligned_cols=47  Identities=21%  Similarity=0.233  Sum_probs=36.2

Q ss_pred             hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +...|.|++|||.+..    ..+...++|+.+.++++++.+||-|. .+|+.
T Consensus       348 L~~~DgIIlpGG~G~~----~~~g~i~~ir~a~~~~~PiLGIClG~-Qll~v  394 (535)
T 3nva_A          348 LGNVNGIIVLPGFGSR----GAEGKIKAIKYAREHNIPFLGICFGF-QLSIV  394 (535)
T ss_dssp             TTSCSEEEECCCCSST----THHHHHHHHHHHHHHTCCEEEETHHH-HHHHH
T ss_pred             ccCCCEEEECCCCCCc----cHHHHHHHHHHHHHcCCcEEEECcch-hHHHH
Confidence            3346779999997422    33577889999999999999999995 55664

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=88.80  E-value=0.19  Score=46.98  Aligned_cols=50  Identities=14%  Similarity=-0.035  Sum_probs=34.6

Q ss_pred             hccceeccCC-hhhHH-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGG-LGGAQ-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg-~~~~~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.||+||| ..... ....+..+.++|+++.++++++.+||.|. .+|+.+
T Consensus        44 ~~DglILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~-QlL~~a   95 (555)
T 1jvn_A           44 GTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGL-QALFAG   95 (555)
T ss_dssp             TCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHH-HTTEEE
T ss_pred             cCCEEEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhh-hhhhhh
Confidence            4567899995 32111 11112236788999989999999999995 678875

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=87.43  E-value=0.49  Score=44.19  Aligned_cols=47  Identities=21%  Similarity=0.193  Sum_probs=35.4

Q ss_pred             hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          109 ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       109 ~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ...|-||+|||.+..    ..+..+..++.+.++++|+.+||-|. -+|+.+
T Consensus       354 ~~~DGIILpGGfGd~----~~~g~i~~ir~a~e~~iPiLGICLGm-QlL~~a  400 (550)
T 1vco_A          354 RDVSGILVPGGFGVR----GIEGKVRAAQYARERKIPYLGICLGL-QIAVIE  400 (550)
T ss_dssp             TTCSCEEECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHH-HHHHHH
T ss_pred             hcCCEEEECCCCCCc----chhhhHHHHHHHHHCCCcEEEECcCH-HHHHHH
Confidence            346779999997432    22456788888888899999999995 667643

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=87.33  E-value=0.67  Score=39.69  Aligned_cols=70  Identities=10%  Similarity=0.038  Sum_probs=50.1

Q ss_pred             HhhhccceeccCChhh-HHhhhcCHHHHHHHHHHHhCC-CcEEEEcchhHHhhhh----------------------cCC
Q 026831          107 KAARRLENARLGGLGG-AQAFAKSEKLVNMLKKQKESN-RPYGAICASPALVLEP----------------------HGL  162 (232)
Q Consensus       107 ~~~~~d~livpGg~~~-~~~~~~~~~l~~~Lr~~~~~g-~~v~aic~G~~~lLA~----------------------aGL  162 (232)
                      .+.+.|.|+|.||... .-....+..+.+.|++.+++| .++++.|.|+ .++..                      .||
T Consensus       107 ~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA-~i~~~~m~~~g~s~~~p~~~~v~~~~GLGl  185 (291)
T 3en0_A          107 FVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGA-AVMGHHMIAGGSSGEWPNRALVDMAVGLGI  185 (291)
T ss_dssp             HHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHH-HTTSSEEEEEECCSSCCCGGGEEEEECCCS
T ss_pred             HHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHH-HhhhHheEcCCCCccCcccCceeecCcccc
Confidence            3456788999999631 222345778999999999999 8999999996 44431                      367


Q ss_pred             CCCCeeecCccchhh
Q 026831          163 LKGKKATAFPAMCNK  177 (232)
Q Consensus       163 L~g~~~T~h~~~~~~  177 (232)
                      |.+-.+..|+..+..
T Consensus       186 l~~~~id~Hf~~r~R  200 (291)
T 3en0_A          186 VPEIVVDQHFHNRNR  200 (291)
T ss_dssp             STTEEEECSTTTTTT
T ss_pred             cCCCccccccCCcch
Confidence            777667788765443

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=86.57  E-value=0.51  Score=44.02  Aligned_cols=45  Identities=24%  Similarity=0.250  Sum_probs=34.8

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      ..|.||+|||.+..    ..+...++++.+.+.++|+.+||-|. -+|+.
T Consensus       343 ~~DGIilsGGpg~~----~~~g~~~~i~~a~~~~~PiLGIClG~-Qll~v  387 (545)
T 1s1m_A          343 GLDAILVPGGFGYR----GVEGMITTARFARENNIPYLGICLGM-QVALI  387 (545)
T ss_dssp             TCSEEEECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHH-HHHHH
T ss_pred             cCCEEEECCCCCCc----cchhhHHHHHHHHHCCCcEEEECChH-HHHHH
Confidence            35679999997532    23567788998888899999999995 66774

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=85.89  E-value=0.17  Score=41.27  Aligned_cols=46  Identities=13%  Similarity=0.016  Sum_probs=26.2

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|++|||.....    ++....+.+...+.++++.+||.|. .+|+.+
T Consensus        67 ~~dglil~Gg~~~~~----~~~~~~~~~~~~~~~~PilGIC~G~-Qll~~~  112 (218)
T 2vpi_A           67 GFRAIIISGGPNSVY----AEDAPWFDPAIFTIGKPVLGICYGM-QMMNKV  112 (218)
T ss_dssp             TCSEEEEEC-------------CCCCCGGGGTSSCCEEEETHHH-HHHHHH
T ss_pred             CCCEEEECCCCcccc----cccchhHHHHHHHcCCCEEEEcHHH-HHHHHH
Confidence            367799999953221    1111122344456899999999995 668864

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=84.76  E-value=0.29  Score=45.71  Aligned_cols=49  Identities=16%  Similarity=0.067  Sum_probs=30.4

Q ss_pred             hccceeccCChhhHHhhhcCHHHH-HHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLV-NMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~-~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.||+|||....... ..+.+. ..++.+.++++++.+||.|. .+|+.+
T Consensus        50 ~~dgIIlsGGp~s~~~~-~~~~~~~~l~~~a~~~g~PvLGIC~G~-QlLa~~   99 (556)
T 3uow_A           50 NIKGVILSGGPYSVTEA-GSPHLKKEVFEYFLEKKIPIFGICYGM-QEIAVQ   99 (556)
T ss_dssp             CEEEEEECCCSCCTTST-TCCCCCHHHHHHHHHTTCCEEEETHHH-HHHHHH
T ss_pred             CCCEEEECCCCCccccc-CCcchhHHHHHHhhhcCCCEEEECHHH-HHHHHH
Confidence            34669999986433211 111122 33444566799999999995 668865

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=82.54  E-value=0.67  Score=44.09  Aligned_cols=49  Identities=20%  Similarity=0.274  Sum_probs=34.5

Q ss_pred             hccceeccCChhhHHhhhcC---HHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKS---EKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~---~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.|||+||.++..+. .+   ..+.++|+++.+.++++.+||-|. -+|+.+
T Consensus       486 ~~DgIIlsGGPg~p~d~-~~p~i~~~~~lI~~a~~~~iPiLGIClG~-QlLa~a  537 (645)
T 3r75_A          486 RYDVVVMGPGPGDPSDA-GDPRIARLYAWLRHLIDEGKPFMAVCLSH-QILNAI  537 (645)
T ss_dssp             GCSEEEECCCSSCTTCT-TSHHHHHHHHHHHHHHHHTCCEEEETHHH-HHHHHH
T ss_pred             CCCEEEECCCCCChhhh-hhhhHHHHHHHHHHHHHCCCCEEEECHHH-HHHHHH
Confidence            35668888885433221 22   246788888888899999999995 668754

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=82.00  E-value=0.6  Score=36.92  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=25.5

Q ss_pred             eeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          114 NARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       114 livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +++.||.+...+   ......+++ ..+.++++.+||-|. .+|+.+
T Consensus        51 iil~gGpg~~~~---~~~~~~l~~-~~~~~~PilGIC~G~-Qll~~~   92 (192)
T 1i1q_B           51 LMLSPGPGVPSE---AGCMPELLT-RLRGKLPIIGICLGH-QAIVEA   92 (192)
T ss_dssp             EEECCCSSCGGG---STTHHHHHH-HHBTTBCEEEETHHH-HHHHHH
T ss_pred             EEECCCCcCchh---CchHHHHHH-HHhcCCCEEEECcCh-HHHHHH
Confidence            666555433322   222333444 456789999999995 678864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	3e-23
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	6e-20
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	3e-19
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	3e-18
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	4e-18
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	1e-16
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	2e-16
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	5e-16
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	3e-14
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	2e-12
d2j01i2	55	d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {	0.001
d2hbaa1	52	d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {	0.002

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 91.0 bits (225), Expect = 3e-23
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG+ GA+ F  S  LV  +K+   S R   AICA+PA VL PH +      T FP + +K
Sbjct: 73  GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDK 132

Query: 178 LSDQSEIENRVVVDGN--LITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS 230
           +  +  ++ RVV D    L+TS+GPGT+++F L I++   GR KA E+A  L+++
Sbjct: 133 IPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMA 187

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 82.6 bits (203), Expect = 6e-20
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 27/127 (21%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVL-----EPHGLLKGKKATAFP 172
           GG G    F  +E L  +L++  E  R   A+C  P+ ++     +   ++KGK  T+F 
Sbjct: 94  GGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFT 153

Query: 173 AMCNKL----------------------SDQSEIENRVVVDGNLITSRGPGTSMEFALAI 210
               +                           +  +  V DGNLIT + P +S   A  +
Sbjct: 154 DEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKV 213

Query: 211 VEKFFGR 217
           V     R
Sbjct: 214 VAALEER 220

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 3e-19
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNK 177
           GG  GAQ  ++S  +  +LK+Q+       AICA P  +L  H +  G K T  P   +K
Sbjct: 72  GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDK 130

Query: 178 LSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLL 229
           + +       ENRV  DG ++TSRGPGTS EFALAIVE   G+  A ++   L+L
Sbjct: 131 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 185

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 79.0 bits (194), Expect = 3e-18
 Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 28/124 (22%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE---PHGLLKGKKATAFPAM 174
           GG G      +S+ +   L+   +++R   ++C  PA  L        L G    AFP  
Sbjct: 149 GGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDA 208

Query: 175 CNKLSD-------------------------QSEIENRVVVDGNLITSRGPGTSMEFALA 209
            +K +                            +I  RV  D  L+T   P  +      
Sbjct: 209 ADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKL 268

Query: 210 IVEK 213
             ++
Sbjct: 269 AAQE 272

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 76.4 bits (187), Expect = 4e-18
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 126 FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSE-- 183
              +EK V++ +K     +P  +IC  P +++   G+L+G+K T++P + + + +     
Sbjct: 76  VRLNEKAVSIARKMFSEGKPVASICHGPQILIS-AGVLRGRKGTSYPGIKDDMINAGVEW 134

Query: 184 IENRVVVDGNLITSRGPGTSMEFALAIVEK 213
           ++  VVVDGN ++SR P     +    V+ 
Sbjct: 135 VDAEVVVDGNWVSSRVPADLYAWMREFVKL 164

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 73.0 bits (178), Expect = 1e-16
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 134 NMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLS--DQSEIENRVVVD 191
           + +++     +  GA   +  L +     L     ++   +          +++     D
Sbjct: 88  HWIREAFGHLKAIGATGEAVDL-VAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTD 146

Query: 192 GNLITSRGPGTSMEFALAIVE-KFFGR 217
              I     G   EF  AI + + + R
Sbjct: 147 AVKIAKGAAGFLGEFFYAIAQHRNWDR 173

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (180), Expect = 2e-16
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 33/129 (25%)

Query: 118 GGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLE------PHGLLKGKKATAF 171
            G G    + K++ L ++  +   +     A+C  PA+            L++GK  T F
Sbjct: 105 AGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGF 164

Query: 172 PAMCNKLSDQSEI---------------------------ENRVVVDGNLITSRGPGTSM 204
             +   +     I                           ++  + DG L+T   P ++ 
Sbjct: 165 TDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAH 224

Query: 205 EFALAIVEK 213
             A+  ++ 
Sbjct: 225 STAVRSIDA 233

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 71.6 bits (175), Expect = 5e-16
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 126 FAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIE 185
              +  L  ++K+ ++ +R    ICA+ + +    G+L     T      +K       E
Sbjct: 77  KGTAADLGGLVKRFRDRDRLVAGICAAASALGG-TGVLNDVAHTGNALASHKAYPAYRGE 135

Query: 186 N------RVVVDGNLITSRGPGTSMEFALAIVEKF--FGRNKALELA 224
                  R V DG ++T+ G    + FA+ I++    FG     EL 
Sbjct: 136 AHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEAELQ 181

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score = 66.0 bits (160), Expect = 3e-14
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 117 LGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCN 176
           L G           + V   +    S +P  AIC  P L++    +++G+K TA   +  
Sbjct: 70  LPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISAD-VIRGRKLTAVKPIII 128

Query: 177 KLSDQSEI---ENRVVVDGNLITSRGPGTSMEFALAIVEK 213
            + +       +  VV    L+TSR P     F    +  
Sbjct: 129 DVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRL 168

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 25/129 (19%)

Query: 118 GGLGGAQAFAKS----------EKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK 167
           GG G A+  +             +L  + +   ++ +P G +C +PA++ +         
Sbjct: 93  GGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLT 152

Query: 168 ATAFPAMCNKLSD-----QSEIENRVVVD--GNLITSRGPGTSMEFALAIVEKFFGRNKA 220
                     L +          + +VVD    ++T+     +   A  I E   G +K 
Sbjct: 153 IGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKL 208

Query: 221 ----LELAK 225
               L LA+
Sbjct: 209 VSRVLVLAE 217

>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]} Length = 55

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: Ribosomal protein L9 N-domain
domain: Ribosomal protein L9 N-domain
species: Thermus thermophilus [TaxId: 274]

 Score = 33.8 bits (78), Expect = 0.001
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 43 LTTVAPGYFRNHLMPKLLAVP----NIEKFAHLIREQ 75
          +  V PGY RN+L+P+ LAV     N++     IR Q
Sbjct: 18 VVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQ 54

>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 52

class: Alpha and beta proteins (a+b)
fold: MbtH/L9 domain-like
superfamily: L9 N-domain-like
family: Ribosomal protein L9 N-domain
domain: Ribosomal protein L9 N-domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 13/51 (25%)

Query: 40 EVILT-------------TVAPGYFRNHLMPKLLAVPNIEKFAHLIREQRR 77
          +VI                VA GY  N L  + LA+         +  Q++
Sbjct: 2  KVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQ 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.97
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	99.96
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.95
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.84
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.83
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.76
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.74
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.68
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	97.87
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	97.71
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	96.06
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	95.8
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	95.72
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	95.24
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	94.87
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	93.76
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	90.86
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	90.69
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	90.41
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	88.71
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	87.88
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	85.92
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	85.78
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	85.66

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-37  Score=250.70  Aligned_cols=179  Identities=31%  Similarity=0.375  Sum_probs=159.4

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhh---ccce
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAAR---RLEN  114 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~---~d~l  114 (232)
                      .+||+||++|||++.|+. |.+++ ...|.++.+++.+++  .|+.++   .|+++.      ++..+++++.   .|.|
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l-~~ag~~v~~~s~~~~--~~v~~~---~g~~i~------~d~~l~d~~~~~~~D~l   68 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVM-RRAGIKVTVAGLAGK--DPVQCS---RDVVIC------PDASLEDAKKEGPYDVV   68 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEETTCS--SCEECT---TSCEEC------CSEEHHHHHHTCCCSEE
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH-HHCCCEEEEEEecCC--cceecC---CCcccc------CccchhccCCcccccEE
Confidence            479999999999999999 99998 566888999997654  266665   499999      9999988643   4679


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC---ccCCCcEEEc
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ---SEIENRVVVD  191 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~---~~~d~~~v~D  191 (232)
                      +||||..+...+..++.+.+|||++++++++|+++|+|+ ++||++|||+||++|+||...+.+++.   .+.+..+|+|
T Consensus        69 iipGG~~~~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~vv~D  147 (186)
T d1p5fa_          69 VLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKD  147 (186)
T ss_dssp             EECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEE
T ss_pred             EEecCccccccccchHHHHHHHHHhhccccceeecccCc-chhhhcCCccccccccchhHHHHHHhcCceEEecccEEec
Confidence            999997556667889999999999999999999999996 789999999999999999999999874   3568899999


Q ss_pred             CCEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhccc
Q 026831          192 GNLITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLS  230 (232)
Q Consensus       192 g~~iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~  230 (232)
                      ||+|||+|+.+++||++++|+++.|++.|+++++.|+++
T Consensus       148 g~iiT~~g~~~~~d~al~li~~l~g~~~a~~va~~l~l~  186 (186)
T d1p5fa_         148 GLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK  186 (186)
T ss_dssp             TTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred             CCEEECCCccHHHHHHHHHHHHhcCHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999999875

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.8e-36  Score=245.33  Aligned_cols=182  Identities=29%  Similarity=0.398  Sum_probs=159.4

Q ss_pred             cEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhh--ccceec
Q 026831           40 EVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAAR--RLENAR  116 (232)
Q Consensus        40 ~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~--~d~liv  116 (232)
                      .++.|+++|||+..|+. |..++ ...+..+.+++....--.++.++   .|+++.      ++..+++++.  .|.|+|
T Consensus         2 ~~ali~l~~Gfe~~E~~~p~d~L-~rag~~v~~~s~~~~~~~~v~~~---~G~~v~------~d~~~~d~~~~d~D~lii   71 (195)
T d2ab0a1           2 ASALVCLAPGSEETEAVTTIDLL-VRGGIKVTTASVASDGNLAITCS---RGVKLL------ADAPLVEVADGEYDVIVL   71 (195)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEECSSTTCCEEECT---TSCEEE------CSEEHHHHTTSCCSEEEE
T ss_pred             ceEEEEecCCccHHHHHHHHHHH-HHCCCEEEEEEEcCCCCceEEeC---CCcEee------cCcChHHcCcccceEEEE
Confidence            57899999999999998 99988 56688888888654411244444   599999      9999998743  567999


Q ss_pred             cCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccCccCCCcEEEcCC--E
Q 026831          117 LGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQSEIENRVVVDGN--L  194 (232)
Q Consensus       117 pGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~~~~d~~~v~Dg~--~  194 (232)
                      |||.++...+..++.+++|||++++++++|+++|+|++++|+++|||+||++|+||...+.+....+.++.+|+|||  +
T Consensus        72 PGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~~~~~~~~~vv~Dgn~~l  151 (195)
T d2ab0a1          72 PGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKL  151 (195)
T ss_dssp             CCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTE
T ss_pred             ccccCccccccccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcccceEeecceEEECCCeE
Confidence            99976566677899999999999999999999999976889999999999999999999999888888999999996  7


Q ss_pred             EEcCChhhHHHHHHHHHHHhcCHHHHHHHHHhhcccc
Q 026831          195 ITSRGPGTSMEFALAIVEKFFGRNKALELAKILLLSC  231 (232)
Q Consensus       195 iTa~g~~a~~d~~l~lI~~~~G~~~a~~va~~l~~~~  231 (232)
                      |||+|+.+++|+++++|++++|++.|+++++.|+++.
T Consensus       152 iTa~g~~a~~d~al~lie~l~g~e~A~~va~~l~~~~  188 (195)
T d2ab0a1         152 LTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAA  188 (195)
T ss_dssp             EEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTTTCCT
T ss_pred             EECCCHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999999999999875

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.5e-33  Score=225.10  Aligned_cols=160  Identities=22%  Similarity=0.323  Sum_probs=143.2

Q ss_pred             cEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hccceec
Q 026831           40 EVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENAR  116 (232)
Q Consensus        40 ~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~liv  116 (232)
                      +||+||++|||++.|+. |.+++ ...|..+++++.+++   ++.++   .|+.+.      ++.+++++.  +.|.|+|
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l-~~ag~~v~~vs~~~~---~V~~~---~g~~i~------~d~~~~~~~~~~~d~vii   67 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRL-KEEGHEVYIASFERG---TITGK---HGYSVK------VDLTFDKVNPEEFDALVL   67 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHH-HHTTCEEEEEESSSE---EEECT---TSCEEE------ECEEGGGCCGGGCSEEEE
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHH-HHCCCEEEEEeCCCc---eEeec---CCcEEe------ccccHHHcCcccccEEEE
Confidence            48999999999999999 99888 566888999999887   77765   499999      999998863  4577999


Q ss_pred             cCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCCcEEEcCCE
Q 026831          117 LGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIENRVVVDGNL  194 (232)
Q Consensus       117 pGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~~~v~Dg~~  194 (232)
                      |||. +......++++++|||++++++++|++||+|+ ++||++|||+||++|+||...+.+++.  .+.++++|.|||+
T Consensus        68 pGg~-~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~i  145 (166)
T d1g2ia_          68 PGGR-APERVRLNEKAVSIARKMFSEGKPVASICHGP-QILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNW  145 (166)
T ss_dssp             CCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTT-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTE
T ss_pred             eccc-chhhhccChHHHHHHHHHHhcCCeeeeccccc-hhhhhcCcccCCccccCccHHHHHHHcCCeEcCCCEEEeCCE
Confidence            9997 45556789999999999999999999999996 789999999999999999999998874  5788999999999


Q ss_pred             EEcCChhhHHHHHHHHHHHh
Q 026831          195 ITSRGPGTSMEFALAIVEKF  214 (232)
Q Consensus       195 iTa~g~~a~~d~~l~lI~~~  214 (232)
                      |||+|+.++.|+++++|+.+
T Consensus       146 iTs~g~~~~~~f~~~~i~~L  165 (166)
T d1g2ia_         146 VSSRVPADLYAWMREFVKLL  165 (166)
T ss_dssp             EEECSGGGHHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHhh
Confidence            99999999999999999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.97  E-value=7.7e-32  Score=219.75  Aligned_cols=173  Identities=18%  Similarity=0.240  Sum_probs=142.7

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hcccee
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENA  115 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~li  115 (232)
                      |+||+++++|||+++|+. +...+....|..+.+++.+++   |+.++   .|+.+.      |+..+++++  +.|.|+
T Consensus         1 M~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~---~V~s~---~G~~v~------~d~~l~~~~~~~~D~li   68 (188)
T d2fexa1           1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM---PVTSM---GGLKVT------PDTSYDALDPVDIDALV   68 (188)
T ss_dssp             CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS---CEECT---TCCEEE------CSEEGGGCCTTTCSEEE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC---cEEcC---CCCEEe------ecCchHHCChhhccEEE
Confidence            579999999999999998 666664456888999999987   88876   499999      999999863  467799


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccc-hhhhccC----c-cCCCcEE
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAM-CNKLSDQ----S-EIENRVV  189 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~-~~~~~~~----~-~~d~~~v  189 (232)
                      ||||.+ .. ...++++++|||++++++++|+++|+|+ ++||++|||+|+++|+||.. .+.++..    . ..+..+|
T Consensus        69 ipGG~~-~~-~~~~~~l~~~lr~~~~~~~~i~aiC~g~-~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV  145 (188)
T d2fexa1          69 IPGGLS-WE-KGTAADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAV  145 (188)
T ss_dssp             ECCBSH-HH-HTCCCCCHHHHHHHHHTTCEEEEETHHH-HHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCE
T ss_pred             ecCCcc-cc-ccccHHHHHHHHHHHHhCCEEEEecchh-HHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCCEEE
Confidence            999974 43 4567889999999999999999999996 77999999999999999653 3444432    2 3456789


Q ss_pred             EcCCEEEcCChhhHHHHHHHHHHHh--cCHHHHHHHHHhhc
Q 026831          190 VDGNLITSRGPGTSMEFALAIVEKF--FGRNKALELAKILL  228 (232)
Q Consensus       190 ~Dg~~iTa~g~~a~~d~~l~lI~~~--~G~~~a~~va~~l~  228 (232)
                      +|||+|||+| .+++|+++++|+++  +|++.++++ +.+.
T Consensus       146 ~DgnliTs~G-~aa~d~al~ii~~L~~~~~e~~~~~-~~~~  184 (188)
T d2fexa1         146 SDGGVVTAAG-SAPVSFAVEILKSLGLFGPEAEAEL-QIFA  184 (188)
T ss_dssp             EETTEEEECT-TCHHHHHHHHHHHTTCCSHHHHHHH-GGGG
T ss_pred             ECCCEEECCC-chHHHHHHHHHHHhcccCHHHHHHH-HHhh
Confidence            9999999988 57899999999997  699998887 4443

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.9e-29  Score=201.07  Aligned_cols=163  Identities=17%  Similarity=0.231  Sum_probs=137.0

Q ss_pred             ccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hcccee
Q 026831           39 LEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLENA  115 (232)
Q Consensus        39 ~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~li  115 (232)
                      .+||+||++|||+..|+. |..++ ...+..+.+++...+  +++.++  ..++++.      ++..++++.  +.|.|+
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l-~~ag~~v~~vs~~~~--~~v~~~--~~~~~v~------~d~~l~~~~~~~yDali   69 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEF-RKAGHEVITIEKQAG--KTVKGK--KGEASVT------IDKSIDEVTPAEFDALL   69 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHH-HHTTCEEEEEESSTT--CEEECT--TSSCEEE------CCEEGGGCCGGGCSEEE
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHH-HHCCCEEEeccCCCC--ceeeee--ccCeEEe------cCCcHHHCChhhceEEE
Confidence            368999999999999999 88888 566888888887654  244433  2358999      999998863  346799


Q ss_pred             ccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhccC--ccCCC-cEEEcC
Q 026831          116 RLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSDQ--SEIEN-RVVVDG  192 (232)
Q Consensus       116 vpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~~--~~~d~-~~v~Dg  192 (232)
                      ||||.+ ...+..|+++++||+++++++++|++||+|+ ++|+++|||+||++|+||...+++++.  .+.++ .+|+||
T Consensus        70 vpGG~~-~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~-~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~  147 (170)
T d1oi4a1          70 LPGGHS-PDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKD  147 (170)
T ss_dssp             ECCBTH-HHHHTTSHHHHHHHHHHHHTTCCEEEETTTH-HHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETT
T ss_pred             Eccchh-hhhhccChHHHHHHHHHhhcCCeeeecccch-HHHhhhhhccccccccCchHHHHHHhCCCEEecCCEEEECC
Confidence            999974 6567789999999999999999999999996 679999999999999999999888774  34444 556778


Q ss_pred             CEEEcCChhhHHHHHHHHHHHh
Q 026831          193 NLITSRGPGTSMEFALAIVEKF  214 (232)
Q Consensus       193 ~~iTa~g~~a~~d~~l~lI~~~  214 (232)
                      ++|||.|+.++.++++++|+.+
T Consensus       148 ~liTs~g~~~~~~fa~~~i~~L  169 (170)
T d1oi4a1         148 QLVTSRTPDDLPAFNREALRLL  169 (170)
T ss_dssp             TEEEESSGGGHHHHHHHHHHHH
T ss_pred             EEEECCChhhHHHHHHHHHHHh
Confidence            9999999999999999999976

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.95  E-value=4.8e-29  Score=201.20  Aligned_cols=162  Identities=13%  Similarity=0.089  Sum_probs=139.8

Q ss_pred             CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhhh--ccce
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAAR--RLEN  114 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~~--~d~l  114 (232)
                      +.+||+||++|||...|+. |...+ ...+..+.+++.+.+   ++.++   .|+.+.      ++.++++.+.  .|.+
T Consensus         2 ~~rkI~ilv~dG~~~~e~~~~~~~l-~~ag~~v~ivs~~~~---~v~~~---~g~~v~------~d~~~~~~~~~~~dal   68 (184)
T d1sy7a1           2 KSRRVAIIIADGYDNVAYDAAYAAI-SANQAIPLVIGPRRS---KVTAA---NGSTVQ------PHHHLEGFRSTMVDAI   68 (184)
T ss_dssp             TTCEEEEECCTTBCHHHHHHHHHHH-HHTTCEEEEEESCSS---CEEBT---TSCEEC------CSEETTTCCGGGSSEE
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHH-HHCCCEEEEEEecCC---ccccc---cccccc------ccccccccccccceEE
Confidence            4579999999999999999 88888 566888999999887   77765   499998      8888888654  4569


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCccchhhhcc--CccCCCcEEEcC
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPAMCNKLSD--QSEIENRVVVDG  192 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~~~~~~~~~--~~~~d~~~v~Dg  192 (232)
                      ++|||......+..++++++|||++++++++|++||+|+ ++||++|+|+||++|+||...+++..  ..+.+..++.||
T Consensus        69 ivpgg~~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~-~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg  147 (184)
T d1sy7a1          69 FIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAV-DLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDA  147 (184)
T ss_dssp             EECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTTTTTSC
T ss_pred             EEeeccccccccccccchhHHHHHHHhcCCceEEechHH-HHHHHcCCCCCceeccCcchhhhhccccceeccCceEeEC
Confidence            999997556667789999999999999999999999995 78999999999999999999888875  356778899999


Q ss_pred             CEEEcCChhhHHHHHHHHHHH
Q 026831          193 NLITSRGPGTSMEFALAIVEK  213 (232)
Q Consensus       193 ~~iTa~g~~a~~d~~l~lI~~  213 (232)
                      +++|+++.....+|+.++.+.
T Consensus       148 ~~it~~~~~~~~~f~~~i~~h  168 (184)
T d1sy7a1         148 VKIAKGAAGFLGEFFYAIAQH  168 (184)
T ss_dssp             CCCSTTCSSHHHHHHHHHHTC
T ss_pred             CEEecCCHhHHHHHHHHHHHh
Confidence            999999998888998777653

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.84  E-value=9.9e-21  Score=157.10  Aligned_cols=173  Identities=22%  Similarity=0.234  Sum_probs=124.2

Q ss_pred             ccEEEEEecC----------Cccccccc-chhhhccCCCceEEEEeccccccCCccccc-c-ccceEEe--eccCCccch
Q 026831           39 LEVILTTVAP----------GYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEE-E-EEEVRVI--RKSEDNMSR  103 (232)
Q Consensus        39 ~~~I~iLl~~----------gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~-~-~~Gl~v~--~~~~~~~~~  103 (232)
                      .+||.|++-.          ||+..|+. |++++ ...|..+.+++..++.   ..... + .......  ....-..+.
T Consensus         2 ~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l-~~aG~~V~~aS~~gg~---~~~d~~~~~~~~~~~~~~~~~l~~~~   77 (221)
T d1u9ca_           2 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVF-QEKGYDVKVASIQGGE---VPLDPRSINEKDPSWAEAEAALKHTA   77 (221)
T ss_dssp             CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHH-HHTTCEEEEEESSCBC---CCBCGGGSSSCCGGGHHHHHHTTSBE
T ss_pred             CceEEEEecCchhccCCCcccccHHHHHHHHHHH-HHCCCEEEEEecCCCc---ceeccCccccccchhHHHHHHhhCCC
Confidence            4678888853          88999999 99999 6779999999987762   11110 0 0000000  000000222


Q ss_pred             hHHHhh--hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc------CCCCCCeeecCccch
Q 026831          104 EFEKAA--RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH------GLLKGKKATAFPAMC  175 (232)
Q Consensus       104 ~~~~~~--~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a------GLL~g~~~T~h~~~~  175 (232)
                      .++++.  +.|.||||||+++.+++..++.+.++++++++++++|++||+|++ +|+.+      +||+||++|+|+..+
T Consensus        78 ~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~-~l~~a~~~~g~~ll~Gk~~T~~p~~~  156 (221)
T d1u9ca_          78 RLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSFTDEE  156 (221)
T ss_dssp             ECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCSCHHH
T ss_pred             ChhHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccce-eeeccccCCCCceeCCceeeccCCHH
Confidence            333332  356699999997778889999999999999999999999999985 57764      499999999998755


Q ss_pred             hh---------------hccC--c-----cCCCcEEEcCCEEEcCChhhHHHHHHHHHHHhcC
Q 026831          176 NK---------------LSDQ--S-----EIENRVVVDGNLITSRGPGTSMEFALAIVEKFFG  216 (232)
Q Consensus       176 ~~---------------~~~~--~-----~~d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G  216 (232)
                      +.               +++.  .     ..+..+|+|||+||+.|+.++.++++.+|+.+..
T Consensus       157 e~~~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~  219 (221)
T d1u9ca_         157 EREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEE  219 (221)
T ss_dssp             HHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             HhhcccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhc
Confidence            43               2321  2     2345689999999999999999999999998854

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=8.4e-21  Score=159.01  Aligned_cols=173  Identities=14%  Similarity=0.206  Sum_probs=123.0

Q ss_pred             ccEEEEEecC------------Cccccccc-chhhhccCCCceEEEEeccccccCCcc-ccccccceE-------Eeecc
Q 026831           39 LEVILTTVAP------------GYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEE-EEEEEEEVR-------VIRKS   97 (232)
Q Consensus        39 ~~~I~iLl~~------------gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~-s~~~~~Gl~-------v~~~~   97 (232)
                      ++||.|++..            ||+..|++ |++.+ ...|..+.+.+..++.  +.. .+.....+.       ..+..
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l-~~aG~~V~iASp~G~~--~~d~~s~~~~~~~~~~~~~~~~~~~   78 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTF-RKEGFEVDFVSETGKF--GWDEHSLAKDFLNGQDETDFKNKDS   78 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHH-HHTTCEEEEECSSSCC--CBCGGGGSTTTSCHHHHHHHHCTTS
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHH-HHCCCeEEEECCCCCC--CCCcccccccccccHHHHHHhhhhH
Confidence            5678888743            88889999 99999 6778888888887652  111 110000000       00000


Q ss_pred             C----CccchhHHHh--hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc-------CCCC
Q 026831           98 E----DNMSREFEKA--ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLK  164 (232)
Q Consensus        98 ~----~~~~~~~~~~--~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a-------GLL~  164 (232)
                      .    -..+..++++  .+.|.|++|||++.++++..++.+.++|++++++|++|++||+|++. |+.+       +|++
T Consensus        79 ~~~~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~-L~~~~~~~~g~~ll~  157 (236)
T d1qvwa_          79 DFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAM-FDGLTDKKTGRPLIE  157 (236)
T ss_dssp             HHHHHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGG-GTTCBCTTTCSBTTT
T ss_pred             HHHHHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHH-HHHHhhccccccccc
Confidence            0    0012233333  23567999999987888999999999999999999999999999864 6543       5999


Q ss_pred             CCeeecCccchhh-------------------hccC--c------cCCCcEEEcCCEEEcCChhhHHHHHHHHHHHhc
Q 026831          165 GKKATAFPAMCNK-------------------LSDQ--S------EIENRVVVDGNLITSRGPGTSMEFALAIVEKFF  215 (232)
Q Consensus       165 g~~~T~h~~~~~~-------------------~~~~--~------~~d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~  215 (232)
                      ||++|+++..++.                   +++.  .      ..+..+|+|||+||+.++.++..++..+|+.+.
T Consensus       158 Gk~vT~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         158 GKSITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             TCEECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             CceeccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            9999999765543                   2221  1      235678999999999999999999999999864

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3e-18  Score=146.16  Aligned_cols=173  Identities=17%  Similarity=0.159  Sum_probs=123.6

Q ss_pred             CccEEEEEec--------------CCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccC----
Q 026831           38 RLEVILTTVA--------------PGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSE----   98 (232)
Q Consensus        38 ~~~~I~iLl~--------------~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~----   98 (232)
                      ..+||.+++.              -|+.+.|+. |++.+ ...|..+.+.+.+++   ++.-+.+  .+.-..+..    
T Consensus        43 g~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l-~~AG~eVdiASp~G~---~~~~D~~--s~~~~d~~~~~~~  116 (279)
T d1n57a_          43 GKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHL-HAAGFEFEVATISGL---MTKFEYW--AMPHKDEKVMPFF  116 (279)
T ss_dssp             SSCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHH-HHTTCCEEEEESSSC---CCCBCGG--GCCTTCTTHHHHH
T ss_pred             CCceEEEEEcCccccccCCCccccCccCHHHHHHHHHHH-HHCCCEEEEECCCCC---CCCcCcc--ccccccHHHHHHH
Confidence            4578988865              588889999 99998 777999999998876   2221110  000000000    


Q ss_pred             ------CccchhHHHh-------hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc---CC
Q 026831           99 ------DNMSREFEKA-------ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH---GL  162 (232)
Q Consensus        99 ------~~~~~~~~~~-------~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a---GL  162 (232)
                            ......++++       .+.|.||+|||++.++++..|+.+.++|+.++++|++|++||+|++.+|+..   ++
T Consensus       117 ~~~~~~~~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l  196 (279)
T d1n57a_         117 EQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNP  196 (279)
T ss_dssp             HHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCT
T ss_pred             HhHHHHHhCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcc
Confidence                  0001112222       1356699999998788899999999999999999999999999997644432   69


Q ss_pred             CCCCeeecCccchhh-------------------hccC--cc----CCCcEEEcCCEEEcCChhhHHHHHHHHHHHhcC
Q 026831          163 LKGKKATAFPAMCNK-------------------LSDQ--SE----IENRVVVDGNLITSRGPGTSMEFALAIVEKFFG  216 (232)
Q Consensus       163 L~g~~~T~h~~~~~~-------------------~~~~--~~----~d~~~v~Dg~~iTa~g~~a~~d~~l~lI~~~~G  216 (232)
                      ++||++|+++..+|.                   +++.  .+    .+..+|+|||+||+.++.++..++..+++++..
T Consensus       197 ~~Gk~vT~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~  275 (279)
T d1n57a_         197 LNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLA  275 (279)
T ss_dssp             TTTCEECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHH
T ss_pred             cCCeEEeecCCHHHhccchhccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHH
Confidence            999999999875543                   2221  12    234689999999999999999999999998754

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.74  E-value=1.4e-18  Score=136.33  Aligned_cols=114  Identities=9%  Similarity=-0.028  Sum_probs=97.9

Q ss_pred             CccEEEEEecCCccccccc-chhhhccCCCceEEEEeccccccCCccccccccceEEeeccCCccchhHHHhh--hccce
Q 026831           38 RLEVILTTVAPGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEEEEEEVRVIRKSEDNMSREFEKAA--RRLEN  114 (232)
Q Consensus        38 ~~~~I~iLl~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~~~~Gl~v~~~~~~~~~~~~~~~~--~~d~l  114 (232)
                      +.+||+||++|||+..|+. |...+ ...+..+.+++.+.+   ++.+.   .|..+.      ++.+|++.+  ..|.|
T Consensus         2 ~grkVaiLv~dg~~~~e~~~~~~~l-~~ag~~v~~v~~~~~---~v~~~---~G~~i~------~d~t~~~~~~~~yDal   68 (156)
T d1p80a1           2 KGRVVAILLNDEVRSADLLAILKAL-KAKGVHAKLLYSRMG---EVTAD---DGTVLP------IAATFAGAPSLTVDAV   68 (156)
T ss_dssp             TTCEEEEECCTTCCHHHHHHHHHHH-HHHTCEEEEEESSSS---EEECT---TSCEEE------CCEETTTSCGGGCSEE
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH-HHCCCEEEEEecccc---ccccc---ceeEEe------eeeeeccCCcccCCEE
Confidence            4679999999999999999 88887 556888899998877   66655   499999      999998875  35779


Q ss_pred             eccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCe
Q 026831          115 ARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKK  167 (232)
Q Consensus       115 ivpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~  167 (232)
                      +||||..  ..+..+++++.||+++++++|+|+++|+|+ ++|+.+||++++.
T Consensus        69 iiPGG~~--~~l~~~~~~~~~i~e~~~~~K~I~aic~g~-~~La~agl~~~~~  118 (156)
T d1p80a1          69 IVPCGNI--ADIADNGDANYYLMEAYKHLKPIALAGDAR-KFKATIKIADQGE  118 (156)
T ss_dssp             EECCSCT--HHHHTCHHHHHHHHHHHHTTCCEEEEGGGG-GGGGTTTCCSSCC
T ss_pred             EeeCCch--HHHhcchHHHHHHHHHHHcCCeEEEECchH-HHHHHcCCCcCCC
Confidence            9999963  357889999999999999999999999996 6799999998764

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=7.9e-17  Score=132.91  Aligned_cols=158  Identities=15%  Similarity=0.180  Sum_probs=104.6

Q ss_pred             ccEEEEEe-----cCCccccccc-chhhhccCCCceEEEEeccccccCCccccc-----cccceEEee-ccCCccchhHH
Q 026831           39 LEVILTTV-----APGYFRNHLM-PKLLAVPNIEKFAHLIREQRRIFQPEEEEE-----EEEEVRVIR-KSEDNMSREFE  106 (232)
Q Consensus        39 ~~~I~iLl-----~~gf~~~el~-p~~~a~~~~~~~~~~v~~~~~~~~pv~s~~-----~~~Gl~v~~-~~~~~~~~~~~  106 (232)
                      |++|+|+|     +|||++.|+. |.+.+ ...|..+.+++++.+....+....     .+.+..+.. ........+++
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L-~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~   79 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAI-SRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLA   79 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHH-HHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred             CCEEEEEecCCCCCCchhHHHHHHHHHHH-HHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChH
Confidence            57899996     5999999999 88888 667888888888765211111100     000000000 00000223466


Q ss_pred             Hh--hhccceeccCChhhHHhhh----------cCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhcCCCCCCeeecCc-c
Q 026831          107 KA--ARRLENARLGGLGGAQAFA----------KSEKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFP-A  173 (232)
Q Consensus       107 ~~--~~~d~livpGg~~~~~~~~----------~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~aGLL~g~~~T~h~-~  173 (232)
                      ++  .+.|.||+|||+++..++.          .++.+.++|++++++|+++++||+|| .+|++++.+.+++.+++| .
T Consensus        80 ~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp-~~l~~~~~~~~~~~~~~~~~  158 (217)
T d1vhqa_          80 QADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP-AMLPKIFDFPLRLTIGTDID  158 (217)
T ss_dssp             GCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGG-GGHHHHCSSCCEECCCSCHH
T ss_pred             HCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhH-HHHHHHhccCCCeeeccChh
Confidence            54  2456799999987655443          36899999999999999999999998 569999988888666554 4


Q ss_pred             chhhhccC--ccC----CCcEEE-cCCEEEcC
Q 026831          174 MCNKLSDQ--SEI----ENRVVV-DGNLITSR  198 (232)
Q Consensus       174 ~~~~~~~~--~~~----d~~~v~-Dg~~iTa~  198 (232)
                      ..+.+++.  .+.    ++.+|+ |||++|++
T Consensus       159 ~~~~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         159 TAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             HHHHHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             hHHHHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            55667653  222    233443 49999985

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.87  E-value=3.6e-06  Score=66.83  Aligned_cols=51  Identities=18%  Similarity=0.171  Sum_probs=37.9

Q ss_pred             hhhccceeccCChhhHH-hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          108 AARRLENARLGGLGGAQ-AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~-~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      +.+.|.||+|||..+.. .......+.++|+++.++|+++.+||.|. .+|++
T Consensus        41 l~~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~-Qll~~   92 (202)
T d1q7ra_          41 LEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGL-ILLAK   92 (202)
T ss_dssp             GTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHH-HHHEE
T ss_pred             HhcCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehhh-HHhhh
Confidence            34567799999864221 12344567899999999999999999995 77874

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.71  E-value=1.2e-05  Score=63.34  Aligned_cols=52  Identities=13%  Similarity=0.201  Sum_probs=37.4

Q ss_pred             hhhccceeccCChhhH-HhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          108 AARRLENARLGGLGGA-QAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       108 ~~~~d~livpGg~~~~-~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +...|.||+|||.... ........+.++|+++.++++++.+||.|. .+|++.
T Consensus        36 l~~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~-Qll~~~   88 (195)
T d2nv0a1          36 LNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGL-IILAKE   88 (195)
T ss_dssp             GGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHH-HHHSBC
T ss_pred             HhhCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccccH-HHHHhh
Confidence            3346779999985322 122233456788999999999999999995 778863

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.06  E-value=0.0072  Score=49.34  Aligned_cols=56  Identities=9%  Similarity=0.129  Sum_probs=37.4

Q ss_pred             hccceeccCChhhHHh----------hhcCHHHHHHHHHHH-hCCCcEEEEcchhHHhhhhcC-CCCCC
Q 026831          110 RRLENARLGGLGGAQA----------FAKSEKLVNMLKKQK-ESNRPYGAICASPALVLEPHG-LLKGK  166 (232)
Q Consensus       110 ~~d~livpGg~~~~~~----------~~~~~~l~~~Lr~~~-~~g~~v~aic~G~~~lLA~aG-LL~g~  166 (232)
                      +.+.|++|||...-+.          ...+..+...+.++. +.++++.+||.| ..+|.+.| |+.|.
T Consensus        51 ~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNG-fQiL~elg~l~pg~  118 (262)
T d1t3ta2          51 NFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNG-CQMMSNLRELIPGS  118 (262)
T ss_dssp             GCSEEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHH-HHHHHTTGGGSTTC
T ss_pred             ccceEEEeccccccccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechH-HHHHHHhcccCCCc
Confidence            3556899998632111          123555666666666 468999999999 57899985 66553

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=95.80  E-value=0.0016  Score=50.49  Aligned_cols=49  Identities=16%  Similarity=0.124  Sum_probs=34.5

Q ss_pred             ccceeccC-Chh-hHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLG-GLG-GAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpG-g~~-~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|-||+|| |.. ...+..++..+.+.|+++.++++||.+||.|. .+|++.
T Consensus        43 ~D~lIlPG~G~f~~~~~~l~~~~~~~~i~~~~~~~~PiLGIClG~-QlL~~~   93 (200)
T d1k9vf_          43 YDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGM-QLLFEE   93 (200)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHH-HTTEEE
T ss_pred             cCeEEEcChHHHHHHHHhhhcccccccccccccccceEEEEecce-eEEeee
Confidence            45588899 531 11112234467889999999999999999995 678753

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=95.72  E-value=0.0024  Score=51.04  Aligned_cols=50  Identities=18%  Similarity=0.186  Sum_probs=36.4

Q ss_pred             hccceeccCChhhHHhh---hcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAF---AKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~---~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ..|.+||+||..+..+.   .......++|+++.+.++++.+||-|. -+|+++
T Consensus        48 ~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~-Qlla~a  100 (230)
T d1o1ya_          48 EYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGS-QMLAKV  100 (230)
T ss_dssp             GCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHH-HHHHHH
T ss_pred             hCCEEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCH-HHHHHH
Confidence            35668999985332211   123567899999999999999999995 678865

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.24  E-value=0.015  Score=45.05  Aligned_cols=56  Identities=16%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             hHHHhhhccceeccCChhhHH---hhhcCHHHHHHHHHH-HhCCCcEEEEcchhHHhhhhc
Q 026831          104 EFEKAARRLENARLGGLGGAQ---AFAKSEKLVNMLKKQ-KESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       104 ~~~~~~~~d~livpGg~~~~~---~~~~~~~l~~~Lr~~-~~~g~~v~aic~G~~~lLA~a  160 (232)
                      +.+++...|.||||||.....   .+.....+.+.|.++ ...++++.+||.|. .+|++.
T Consensus        36 ~~~~l~~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~-QlL~~~   95 (218)
T d2abwa1          36 NVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGC-ILLSKN   95 (218)
T ss_dssp             SHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHH-HHTEEE
T ss_pred             CHHHHhhCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeEEEecHHH-HHHHHh
Confidence            345555678899999732111   111233344444444 45799999999995 678753

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.76  E-value=0.012  Score=45.37  Aligned_cols=50  Identities=20%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             hhhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          108 AARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       108 ~~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      ....|.+|++||.++..+  ....+..+++...+.++++.+||-|. .+|+.+
T Consensus        40 ~~~~dgiIl~Gg~~~~~~--~~~~~~~l~~~~~~~~~PilGIC~G~-Qll~~~   89 (196)
T d2a9va1          40 LDGLDGLVLSGGAPNIDE--ELDKLGSVGKYIDDHNYPILGICVGA-QFIALH   89 (196)
T ss_dssp             GTTCSEEEEEEECSCGGG--TGGGHHHHHHHHHHCCSCEEEETHHH-HHHHHH
T ss_pred             HhcCCcEEEecccccccc--ccchhhhHHHHHhhcCceEEEeehhh-hhhhhc
Confidence            334567899998543322  22334455555667899999999995 678865

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.86  E-value=0.11  Score=39.09  Aligned_cols=45  Identities=18%  Similarity=0.186  Sum_probs=33.8

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.|+++||.. .   ..+.....++++..+.++|+.+||-|- .+|+.+
T Consensus        44 ~~gvilsgg~~-~---~~~~~~~~~i~~~~~~~~PiLGIClG~-Q~l~~~   88 (188)
T d1wl8a1          44 PKGIIFSGGPS-L---ENTGNCEKVLEHYDEFNVPILGICLGH-QLIAKF   88 (188)
T ss_dssp             CSEEEECCCSC-T---TCCTTHHHHHHTGGGTCSCEEEETHHH-HHHHHH
T ss_pred             cceeeeccCcc-c---ccccccccccccccccccceeehhhhh-hhhhhh
Confidence            45588888742 2   344567778888899999999999995 678854

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.69  E-value=0.14  Score=40.41  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=36.3

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .+|.||+.||-+.+   .+.....+.++++.+.+.||.+||-|- -+|+.+
T Consensus        80 ~pdgivlS~GPg~P---~~~~~~~~~~~~~~~~~iPILGIClG~-Qlia~~  126 (228)
T d1a9xb2          80 NPDGIFLSNGPGDP---APCDYAITAIQKFLETDIPVFGICLGH-QLLALA  126 (228)
T ss_dssp             CCSEEEECCCSBCS---TTCHHHHHHHHHHTTSCCCEEEETHHH-HHHHHH
T ss_pred             CCCEEEEeCCCCcc---ccchhHHHHHHHHHhCCCCEEEEEcCh-HHHHHH
Confidence            35679998885432   345678889999888899999999995 678854

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.41  E-value=0.12  Score=39.04  Aligned_cols=48  Identities=10%  Similarity=0.002  Sum_probs=31.7

Q ss_pred             ccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhhc
Q 026831          111 RLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEPH  160 (232)
Q Consensus       111 ~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~a  160 (232)
                      .|.+++.||.+.+.+ ..+.....++.+....++|+.+||-|. .+|+.+
T Consensus        46 ~~gvilsgGp~~~~~-~~~~~~~~~i~~~~~~~~PiLGIClG~-Qll~~~   93 (195)
T d1qdlb_          46 PDRLIISPGPGTPEK-REDIGVSLDVIKYLGKRTPILGVCLGH-QAIGYA   93 (195)
T ss_dssp             CSEEEECCCSSCTTS-HHHHTTHHHHHHHHTTTSCEEEETHHH-HHHHHH
T ss_pred             CCccccCCCCCcccc-ccccccchhhhhhhcCCCCEEEeehhh-hhhhhc
Confidence            456777777533321 222334456677778899999999995 678854

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=88.71  E-value=0.063  Score=40.19  Aligned_cols=49  Identities=16%  Similarity=0.087  Sum_probs=33.4

Q ss_pred             hccceeccCChhh--HHhhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          110 RRLENARLGGLGG--AQAFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       110 ~~d~livpGg~~~--~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      ..|.+++||+...  .............+.+....++++.++|.|. .+|++
T Consensus        38 ~~d~lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiClG~-qll~~   88 (195)
T d1ka9h_          38 EADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGM-QVLYE   88 (195)
T ss_dssp             SCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHH-HTTSS
T ss_pred             HHhhhhcCCCccccchhhhccccCCcccccccccccchhhhhhhhh-heeee
Confidence            3466899997421  1112233445667788888999999999995 67874

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.88  E-value=0.19  Score=40.46  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             hccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchh
Q 026831          110 RRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASP  153 (232)
Q Consensus       110 ~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~  153 (232)
                      ..|-++||||++ .   +.-+-.+..++-+..++.|..+||-|.
T Consensus        57 ~~dGIlvPGGFG-~---RG~eGki~ai~yARen~iPfLGIClGm   96 (258)
T d1s1ma1          57 GLDAILVPGGFG-Y---RGVEGMITTARFARENNIPYLGICLGM   96 (258)
T ss_dssp             TCSEEEECCCCS-S---TTHHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred             ccccEEeecccC-c---CCHHHHHHHHHHHHHcCccHHHHHHHH
Confidence            356699999985 2   345677888888889999999999995

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.92  E-value=0.64  Score=37.29  Aligned_cols=56  Identities=14%  Similarity=0.072  Sum_probs=31.3

Q ss_pred             hhHHHh-hhccceeccCChhhHH--hhh-cCHHHHHHHHHHH--hCCCcEEEEcchhHHhhhh
Q 026831          103 REFEKA-ARRLENARLGGLGGAQ--AFA-KSEKLVNMLKKQK--ESNRPYGAICASPALVLEP  159 (232)
Q Consensus       103 ~~~~~~-~~~d~livpGg~~~~~--~~~-~~~~l~~~Lr~~~--~~g~~v~aic~G~~~lLA~  159 (232)
                      ..++.. ...|.|++|||..+..  ... ....+.++.....  .++.||.|||-|. -+|+.
T Consensus        51 ~~~~~~l~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~-Qll~~  112 (288)
T d1l9xa_          51 KDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF-EELSL  112 (288)
T ss_dssp             HHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH-HHHHH
T ss_pred             HHHHHHHhhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHH-HHHHH
Confidence            344443 3467799999952211  111 1233444443333  3456999999995 56764

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=85.78  E-value=0.48  Score=38.35  Aligned_cols=56  Identities=13%  Similarity=-0.005  Sum_probs=38.8

Q ss_pred             hhHHHhh--hccceeccCChhhHH---hhhcCHHHHHHHHHHHhCCCcEEEEcchhHHhhhh
Q 026831          103 REFEKAA--RRLENARLGGLGGAQ---AFAKSEKLVNMLKKQKESNRPYGAICASPALVLEP  159 (232)
Q Consensus       103 ~~~~~~~--~~d~livpGg~~~~~---~~~~~~~l~~~Lr~~~~~g~~v~aic~G~~~lLA~  159 (232)
                      .+|+++.  ..|.+||-|+..+..   +..--+++.++++...++++.+.+||-|+ .+++.
T Consensus        74 ~~~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGa-Qa~~~  134 (281)
T d2ghra1          74 KTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGA-QAGLY  134 (281)
T ss_dssp             ECHHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHH-HHHHH
T ss_pred             hhHHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHH-HHHHH
Confidence            3677763  356799999853221   11123788889998888999999999995 55554

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.66  E-value=0.33  Score=38.71  Aligned_cols=41  Identities=24%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             hhccceeccCChhhHHhhhcCHHHHHHHHHHHhCCCcEEEEcchh
Q 026831          109 ARRLENARLGGLGGAQAFAKSEKLVNMLKKQKESNRPYGAICASP  153 (232)
Q Consensus       109 ~~~d~livpGg~~~~~~~~~~~~l~~~Lr~~~~~g~~v~aic~G~  153 (232)
                      ...|-++||||.+ .   +.-+--+..++-+..++.|..+||-|.
T Consensus        57 ~~~dGIlvPGGFG-~---rG~eGki~ai~yARen~iPfLGIClGm   97 (250)
T d1vcoa1          57 RDVSGILVPGGFG-V---RGIEGKVRAAQYARERKIPYLGICLGL   97 (250)
T ss_dssp             TTCSCEEECCCCS-S---TTHHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred             hcCCeEEecCCCC-c---cchHHHHHHHHHHHHcchhHHHHHHHH
Confidence            3456799999985 2   233566667888889999999999995