Citrus Sinensis ID: 026925
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 230 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FLB0 | 593 | DEAD-box ATP-dependent RN | yes | no | 0.969 | 0.376 | 0.775 | 1e-100 | |
| Q761Z9 | 647 | DEAD-box ATP-dependent RN | yes | no | 0.986 | 0.350 | 0.687 | 2e-91 | |
| Q8GXD6 | 558 | DEAD-box ATP-dependent RN | no | no | 0.939 | 0.387 | 0.676 | 3e-86 | |
| Q9FVV4 | 465 | DEAD-box ATP-dependent RN | no | no | 0.817 | 0.404 | 0.572 | 6e-69 | |
| Q6AZV7 | 594 | ATP-dependent RNA helicas | N/A | no | 0.939 | 0.363 | 0.471 | 3e-51 | |
| Q5ZLN8 | 591 | ATP-dependent RNA helicas | yes | no | 0.939 | 0.365 | 0.471 | 3e-51 | |
| Q2NL08 | 601 | ATP-dependent RNA helicas | yes | no | 0.934 | 0.357 | 0.482 | 8e-51 | |
| Q8NHQ9 | 600 | ATP-dependent RNA helicas | yes | no | 0.934 | 0.358 | 0.478 | 2e-50 | |
| Q8JHJ2 | 593 | ATP-dependent RNA helicas | yes | no | 0.939 | 0.364 | 0.476 | 8e-50 | |
| Q6ZPL9 | 600 | ATP-dependent RNA helicas | yes | no | 0.934 | 0.358 | 0.465 | 8e-50 |
| >sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana GN=RH18 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/227 (77%), Positives = 203/227 (89%), Gaps = 4/227 (1%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS+QIY+VAQPF+STL +V SVLLVGG EVKAD+K IEEEG N+LIGTPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL DIMERM++LDFRNLEIL+LDEADRLL+MGFQ+Q++YIISRLPK RRTGLFSATQTE
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
VEEL+KAGLRNPVRVEVRA+SKS SSQQL +SKTP GLHLEY+ECE D+K SQLVD
Sbjct: 212 VEELAKAGLRNPVRVEVRAKSKSE----SSQQLTNSKTPSGLHLEYMECEADKKSSQLVD 267
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
LLIKN KK+I++FMTCA VDYWG+VL ++ LKS+SLIP+HG MKQ
Sbjct: 268 LLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQ 314
|
Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica GN=Os01g0164500 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 156/227 (68%), Positives = 191/227 (84%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+G+IISPTRELSSQIY+VAQPF +TL V S+LLVGG ++KA++KK+EEEGAN+L+GTPG
Sbjct: 98 LGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPG 157
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+L+D+MER+D L+++NLEIL+LDEADRLLD+GFQKQI+ IIS+LPKLRRTGLFSATQTEA
Sbjct: 158 KLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRRTGLFSATQTEA 217
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
V+EL+KAGLRNPVRVEV+ E K + Q+L SKTPLGL LEY+ CE K SQLVD
Sbjct: 218 VKELAKAGLRNPVRVEVKTEVKPTGKDGAQQELGPSKTPLGLRLEYMICEASNKSSQLVD 277
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
L++N KKI++YF TCACVDYW +VLP L LK +IP HGKMKQ
Sbjct: 278 FLVQNNGKKIMVYFATCACVDYWAIVLPLLDSLKGSPIIPYHGKMKQ 324
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana GN=RH49 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 318 bits (814), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 155/229 (67%), Positives = 187/229 (81%), Gaps = 13/229 (5%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS+QI+ VA+PF+STLP+V SVLLVGG EV+AD+ +EEEGANLLIGTPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+M+RM+ LDFRNLEIL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFSATQT+A
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 211
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
V +L+KAGLRN + V AESK SKT GL+ EYL+CE D+K SQLV
Sbjct: 212 VADLAKAGLRNAMEVISGAESK-------------SKTSSGLYCEYLKCEADQKSSQLVH 258
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229
LLI+NK+KK++++FMTCACVDYWG+VL ++ LKS+S HGKM Q G
Sbjct: 259 LLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKG 307
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9FVV4|RH55_ARATH DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana GN=RH55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 131/229 (57%), Positives = 161/229 (70%), Gaps = 41/229 (17%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS+QI+ VA+ + EV+AD+ +EEEGANLLIGTPG
Sbjct: 93 MGVIISPTRELSAQIHKVARAVRLDFAKCR--------EVEADMNTLEEEGANLLIGTPG 144
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+M+RM+ LDFRNLEIL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFSATQT+A
Sbjct: 145 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 204
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
V +L+KAGLRNP YL+CE D+K SQLV
Sbjct: 205 VADLAKAGLRNP---------------------------------YLKCEADQKSSQLVH 231
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229
LLI+NK+KK++++FMTCACVDYWG+V+ ++ LKS+S P HGKM Q G
Sbjct: 232 LLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKG 280
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q6AZV7|DDX55_XENLA ATP-dependent RNA helicase DDX55 OS=Xenopus laevis GN=ddx55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 149/231 (64%), Gaps = 15/231 (6%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGR
Sbjct: 85 ALIITPTRELAVQIDEVLSCFTKHFPQFSQILLIGGSNPVDDVRKFKEHGGNIIVATPGR 144
Query: 62 LYDIMERM-DVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD + L++L+LDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRQADGLDLVICVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPS 176
QT+ +E L +AGLRNPVR+ V K V+A+S Q KTP+ L Y+ C+ DEK +
Sbjct: 205 QTQELENLVRAGLRNPVRIAV----KEKGVAATSTQ----KTPIRLQNYYMICKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
+L+ L K K +K +++F TCACV+Y+G L L LK + ++ +HGKMK
Sbjct: 257 KLIAFLQKRKQEKHLVFFSTCACVEYYGKALEML--LKPVKVMCIHGKMKH 305
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Probable ATP-binding RNA helicase. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5ZLN8|DDX55_CHICK ATP-dependent RNA helicase DDX55 OS=Gallus gallus GN=DDX55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 151/231 (65%), Gaps = 15/231 (6%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGR
Sbjct: 85 AIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD ++L++LVLDEADRLLDMGF+ ++ I++ LPK RRTGLFSAT
Sbjct: 145 LEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPS 176
QT+ VE L +AGLRNPVR+ V K V+A++ Q KTP L Y+ C+ DEK +
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAATNTQ----KTPTRLENYYMICKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
QLV L ++K +K +++F TCACV+Y+G L L +K + ++ +HGKMK
Sbjct: 257 QLVHFLRQHKQEKHLVFFSTCACVEYYGKALESL--IKQVKIMCIHGKMKH 305
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Probable ATP-binding RNA helicase. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos taurus GN=DDX55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 147/230 (63%), Gaps = 15/230 (6%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +L +GG DV + +E G N+++ TPGR
Sbjct: 85 AIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD R+LE+LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPS 176
QT+ VE L +AGLRNPVR+ V K V+ASS Q KTP L Y+ C+ DEK +
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAASSTQ----KTPSRLENHYMVCKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
QLV L +K +K +++F TCACV+Y+G L L +K + ++ +HGKMK
Sbjct: 257 QLVHFLRNHKQEKHLVFFSTCACVEYYGKALETL--VKGVKIMCIHGKMK 304
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Probable ATP-binding RNA helicase. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo sapiens GN=DDX55 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 150/230 (65%), Gaps = 15/230 (6%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P+ +L +GG DV++ +++G N+++ TPGR
Sbjct: 85 AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD R+L++LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPS 176
QT+ VE L +AGLRNPVRV V K V+ASS Q KTP L Y+ C+ DEK +
Sbjct: 205 QTQEVENLVRAGLRNPVRVSV----KEKGVAASSAQ----KTPSRLENYYMVCKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
QLV L +K +K +++F TCACV+Y+G L L +K + ++ +HGKMK
Sbjct: 257 QLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVL--VKGVKIMCIHGKMK 304
|
Probable ATP-binding RNA helicase. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio rerio GN=ddx55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 152/231 (65%), Gaps = 15/231 (6%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F+ P +LL+GG DV+K++ +GAN++I TPGR
Sbjct: 85 ALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANIIIATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD ++L++LVLDEADRLLDMGF+ ++ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPS 176
QT+ +E+L +AGLRNPVR+ V K V+ASS Q KTP L Y C +EK +
Sbjct: 205 QTQELEKLVRAGLRNPVRITV----KEKGVAASSVQ----KTPAKLSNYYTMCRAEEKFN 256
Query: 177 QLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
LV L ++K +K +++F TCACV+Y+G L L +K++S+ +HGKMK
Sbjct: 257 TLVAFLRQHKHEKQLVFFSTCACVEYFGKALEVL--VKNVSIHCIHGKMKH 305
|
Probable ATP-binding RNA helicase. Plays an essential role in early embryonic development. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q6ZPL9|DDX55_MOUSE ATP-dependent RNA helicase DDX55 OS=Mus musculus GN=Ddx55 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 148/230 (64%), Gaps = 15/230 (6%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++I+PTREL+ QI V F P +L +GG DV++ ++ G N+++ TPGR
Sbjct: 85 AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD ++L++LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPS 176
QT+ VE L +AGLRNPVR+ V K V+ASS Q KTP L Y+ C+ DEK +
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAASSTQ----KTPSRLENHYMICKADEKFN 256
Query: 177 QLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
QLV L + +K +++F TCACV+Y+G L A+LK + ++ +HGKMK
Sbjct: 257 QLVHFLRSRQQEKHLVFFSTCACVEYYGKALE--ALLKKVKILCIHGKMK 304
|
Probable ATP-binding RNA helicase. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 230 | ||||||
| 225448554 | 595 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.995 | 0.384 | 0.882 | 1e-108 | |
| 297736552 | 576 | unnamed protein product [Vitis vinifera] | 0.995 | 0.397 | 0.882 | 1e-107 | |
| 224101199 | 592 | predicted protein [Populus trichocarpa] | 0.995 | 0.386 | 0.834 | 1e-107 | |
| 356568033 | 589 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.986 | 0.385 | 0.828 | 1e-105 | |
| 356540003 | 589 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.986 | 0.385 | 0.823 | 1e-105 | |
| 357461389 | 659 | DEAD-box ATP-dependent RNA helicase [Med | 0.986 | 0.344 | 0.779 | 1e-103 | |
| 255559531 | 592 | dead box ATP-dependent RNA helicase, put | 0.991 | 0.385 | 0.820 | 1e-102 | |
| 449460880 | 587 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.986 | 0.386 | 0.790 | 1e-100 | |
| 297806553 | 593 | hypothetical protein ARALYDRAFT_908458 [ | 0.969 | 0.376 | 0.779 | 3e-99 | |
| 15239115 | 593 | DEAD-box ATP-dependent RNA helicase 18 [ | 0.969 | 0.376 | 0.775 | 7e-99 |
| >gi|225448554|ref|XP_002273715.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/229 (88%), Positives = 219/229 (95%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+G+I+SPTRELSSQIY+VAQPFISTLP+VKSVLLVGGVEVK+D+KKIEEEGANLLIGTPG
Sbjct: 95 LGVILSPTRELSSQIYNVAQPFISTLPNVKSVLLVGGVEVKSDLKKIEEEGANLLIGTPG 154
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RLYDIMERMDVLDFRNLEIL+LDEADRLLDMGFQKQI+ II+RLPKLRRTGLFSATQTEA
Sbjct: 155 RLYDIMERMDVLDFRNLEILILDEADRLLDMGFQKQITSIIARLPKLRRTGLFSATQTEA 214
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
VEELSKAGLRNPVRVEVRAE+KS + S SSQQLASSKTP GL++EYLECE D+KPSQLVD
Sbjct: 215 VEELSKAGLRNPVRVEVRAEAKSLNDSVSSQQLASSKTPSGLNIEYLECEADKKPSQLVD 274
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229
LLIKNKSKKIIIYFMTCACVDYWGV+LPRL+VLK SLIPLHGKMKQ
Sbjct: 275 LLIKNKSKKIIIYFMTCACVDYWGVILPRLSVLKGFSLIPLHGKMKQTA 323
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736552|emb|CBI25423.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/229 (88%), Positives = 219/229 (95%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+G+I+SPTRELSSQIY+VAQPFISTLP+VKSVLLVGGVEVK+D+KKIEEEGANLLIGTPG
Sbjct: 95 LGVILSPTRELSSQIYNVAQPFISTLPNVKSVLLVGGVEVKSDLKKIEEEGANLLIGTPG 154
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RLYDIMERMDVLDFRNLEIL+LDEADRLLDMGFQKQI+ II+RLPKLRRTGLFSATQTEA
Sbjct: 155 RLYDIMERMDVLDFRNLEILILDEADRLLDMGFQKQITSIIARLPKLRRTGLFSATQTEA 214
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
VEELSKAGLRNPVRVEVRAE+KS + S SSQQLASSKTP GL++EYLECE D+KPSQLVD
Sbjct: 215 VEELSKAGLRNPVRVEVRAEAKSLNDSVSSQQLASSKTPSGLNIEYLECEADKKPSQLVD 274
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229
LLIKNKSKKIIIYFMTCACVDYWGV+LPRL+VLK SLIPLHGKMKQ
Sbjct: 275 LLIKNKSKKIIIYFMTCACVDYWGVILPRLSVLKGFSLIPLHGKMKQTA 323
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101199|ref|XP_002312182.1| predicted protein [Populus trichocarpa] gi|222852002|gb|EEE89549.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/229 (83%), Positives = 210/229 (91%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELSSQIY+VAQPFI+TL + KS+LLVGG++VKADVK IEEEGANLLIGTPG
Sbjct: 92 MGIIISPTRELSSQIYNVAQPFIATLSNFKSMLLVGGMDVKADVKMIEEEGANLLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL+DIM+R+DVLDFRNLE+L+LDEADRLLDMGFQKQ++ IISRLPKLRRTGLFSATQTEA
Sbjct: 152 RLFDIMDRVDVLDFRNLEVLILDEADRLLDMGFQKQLNSIISRLPKLRRTGLFSATQTEA 211
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
VEELSKAGLRNPV+VEVRAE+KS + S S QQLA SKTP GL LEYLECE D+KPSQLVD
Sbjct: 212 VEELSKAGLRNPVKVEVRAETKSLNNSVSGQQLAPSKTPSGLLLEYLECEADKKPSQLVD 271
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229
LL+KNKSKKIIIYFMTCACVDYWGVVLPRL VL SLI LHGKMKQ
Sbjct: 272 LLVKNKSKKIIIYFMTCACVDYWGVVLPRLTVLNGFSLISLHGKMKQTA 320
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568033|ref|XP_003552218.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/227 (82%), Positives = 208/227 (91%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+G+IISPTRELS+QIYHVAQPFISTL +VKS+LLVGG EVKAD+KKIEEEGAN+LIGTPG
Sbjct: 90 LGIIISPTRELSTQIYHVAQPFISTLANVKSMLLVGGAEVKADLKKIEEEGANILIGTPG 149
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RLYDIM RMDVLD +NLEIL+LDEADRLLDMGFQKQI+ II+ LPKLRRTGLFSATQTEA
Sbjct: 150 RLYDIMNRMDVLDLKNLEILILDEADRLLDMGFQKQITSIITLLPKLRRTGLFSATQTEA 209
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
+EEL+KAGLRNPVRVEVRAE+KS + ASS+Q SSKTP GLH+EYLECE D+KPSQLV
Sbjct: 210 IEELAKAGLRNPVRVEVRAETKSENGPASSKQPESSKTPSGLHIEYLECEADKKPSQLVH 269
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
+LIKN SKKIIIYFMTCACVDYWG VLP L+VLK SLIPLHGKMKQ
Sbjct: 270 ILIKNLSKKIIIYFMTCACVDYWGAVLPCLSVLKGFSLIPLHGKMKQ 316
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540003|ref|XP_003538481.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/227 (82%), Positives = 207/227 (91%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+G+IISPTRELS+QIYHVAQ FISTL +VKS+LLVGG EVK D+KKIEEEGAN+LIGTPG
Sbjct: 90 LGIIISPTRELSTQIYHVAQSFISTLMNVKSMLLVGGAEVKTDIKKIEEEGANILIGTPG 149
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RLYDIM RMDVLD +NLEIL+LDEADRLLDMGFQKQI+ IIS LPKLRRTGLFSATQTEA
Sbjct: 150 RLYDIMNRMDVLDLKNLEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEA 209
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
+EEL+KAGLRNPVRVEVRAE+KS ASS+Q SSKTP GLH+EYLECE D+KPSQL+D
Sbjct: 210 IEELAKAGLRNPVRVEVRAETKSEKGPASSKQPESSKTPSGLHIEYLECEEDKKPSQLLD 269
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
+LIKN+SKKIIIYFMTCACVDYWG VLP L+VLK SLIPLHGKMKQ
Sbjct: 270 ILIKNRSKKIIIYFMTCACVDYWGAVLPCLSVLKGFSLIPLHGKMKQ 316
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357461389|ref|XP_003600976.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|355490024|gb|AES71227.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/236 (77%), Positives = 212/236 (89%), Gaps = 9/236 (3%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+G+IISPTREL+SQIYHVAQPFISTL +VKS+LLVGGVEVKAD+KKIEEEGAN+LIGTPG
Sbjct: 104 LGVIISPTRELASQIYHVAQPFISTLANVKSMLLVGGVEVKADIKKIEEEGANVLIGTPG 163
Query: 61 RLYDIMERMDVLDFRNLE---------ILVLDEADRLLDMGFQKQISYIISRLPKLRRTG 111
RL+DIM RMD+LDF++ E IL+LDEADRLLDMGFQKQI+ II+ LPKLRRTG
Sbjct: 164 RLHDIMNRMDILDFKSFEVYLLEKIGHILILDEADRLLDMGFQKQINAIITELPKLRRTG 223
Query: 112 LFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEP 171
LFSATQT+AVEEL+KAGLRNPVRVEVRAE+K+ + SASS+++ SSKTP GL +EYLECE
Sbjct: 224 LFSATQTQAVEELAKAGLRNPVRVEVRAETKTANDSASSKKIESSKTPSGLQIEYLECEA 283
Query: 172 DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
D+KPSQLVD L+KN+SKKIIIYFMTCACVDYWG+VLPRL+VLK SLI LHGKMKQ
Sbjct: 284 DKKPSQLVDFLVKNRSKKIIIYFMTCACVDYWGLVLPRLSVLKGFSLISLHGKMKQ 339
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559531|ref|XP_002520785.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223539916|gb|EEF41494.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/229 (82%), Positives = 209/229 (91%), Gaps = 1/229 (0%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+I+SPTRELSSQIY+VAQPFI TL +VKS+LLVGGV+VKADVKKIEEEGAN+LIGTPG
Sbjct: 93 MGIILSPTRELSSQIYNVAQPFIETLSNVKSMLLVGGVDVKADVKKIEEEGANILIGTPG 152
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL+DIMER+D+LDFRNLE+L+LDEADRLLDMGFQKQI+ IISRLPKLRRTGLFSATQTEA
Sbjct: 153 RLFDIMERVDILDFRNLEVLILDEADRLLDMGFQKQITSIISRLPKLRRTGLFSATQTEA 212
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
VEEL+KAGLRNPVRVEVRA++KS + ++S QL+SSKTP GL LEYLECE D KPS LV
Sbjct: 213 VEELAKAGLRNPVRVEVRAQTKSLN-ESASSQLSSSKTPSGLQLEYLECEADMKPSHLVS 271
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229
LL KNKSKKII+YFMTCACVDYWGVVLPRL LK SLIPLHGKMKQ
Sbjct: 272 LLNKNKSKKIIVYFMTCACVDYWGVVLPRLTALKDFSLIPLHGKMKQTA 320
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460880|ref|XP_004148172.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Cucumis sativus] gi|449515784|ref|XP_004164928.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/229 (79%), Positives = 204/229 (89%), Gaps = 2/229 (0%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELSSQIY VA+PF+STL + K+VLLVGG +VK D+K IEEEGANLLIGTPG
Sbjct: 90 MGIIISPTRELSSQIYEVARPFVSTLSNFKAVLLVGGADVKVDMKVIEEEGANLLIGTPG 149
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL+DIM+R++ LDFRN E+L+LDEADRLLDMGFQKQI+ IISRLPKLRRTGLFSATQTEA
Sbjct: 150 RLFDIMDRIENLDFRNFEVLILDEADRLLDMGFQKQITSIISRLPKLRRTGLFSATQTEA 209
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
VEELSKAGLRNP+RVEV+AESK + SS QLASSKTP LH+EYLECE D+K +QLVD
Sbjct: 210 VEELSKAGLRNPIRVEVKAESKPGPL--SSTQLASSKTPSSLHIEYLECEADKKSTQLVD 267
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229
+LIKNKSKKII+YFMTCACVDYWGVVLP+L LK L LIPLHGKMKQ
Sbjct: 268 ILIKNKSKKIIVYFMTCACVDYWGVVLPQLTGLKGLFLIPLHGKMKQTA 316
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806553|ref|XP_002871160.1| hypothetical protein ARALYDRAFT_908458 [Arabidopsis lyrata subsp. lyrata] gi|297316997|gb|EFH47419.1| hypothetical protein ARALYDRAFT_908458 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 177/227 (77%), Positives = 202/227 (88%), Gaps = 4/227 (1%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELSSQIY+VAQPF+STL +V SVLLVGG EVKAD+K IEEEG NLLIGTPG
Sbjct: 92 MGVIISPTRELSSQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNLLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL DIMERM++LDFRNLEIL+LDEADRLL+MGFQ+Q++YIISRLPK RRTGLFSATQTE
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
VEEL+KAGLRNPVRVEVRA+SKS SSQQ +SKTP GLHLEY+ECE D+K SQLVD
Sbjct: 212 VEELAKAGLRNPVRVEVRAKSKSE----SSQQFTNSKTPSGLHLEYIECEADKKSSQLVD 267
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
LLIKN KK+I++FMTCA VDYWG+VL ++ LKS+SLIP+HG MKQ
Sbjct: 268 LLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQ 314
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239115|ref|NP_196164.1| DEAD-box ATP-dependent RNA helicase 18 [Arabidopsis thaliana] gi|75334017|sp|Q9FLB0.1|RH18_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 18 gi|10176757|dbj|BAB09988.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|332003492|gb|AED90875.1| DEAD-box ATP-dependent RNA helicase 18 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 176/227 (77%), Positives = 203/227 (89%), Gaps = 4/227 (1%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS+QIY+VAQPF+STL +V SVLLVGG EVKAD+K IEEEG N+LIGTPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL DIMERM++LDFRNLEIL+LDEADRLL+MGFQ+Q++YIISRLPK RRTGLFSATQTE
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
VEEL+KAGLRNPVRVEVRA+SKS SSQQL +SKTP GLHLEY+ECE D+K SQLVD
Sbjct: 212 VEELAKAGLRNPVRVEVRAKSKSE----SSQQLTNSKTPSGLHLEYMECEADKKSSQLVD 267
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
LLIKN KK+I++FMTCA VDYWG+VL ++ LKS+SLIP+HG MKQ
Sbjct: 268 LLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQ 314
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 230 | ||||||
| TAIR|locus:2153564 | 593 | AT5G05450 [Arabidopsis thalian | 0.969 | 0.376 | 0.748 | 3.8e-85 | |
| TAIR|locus:2825324 | 558 | AT1G71370 [Arabidopsis thalian | 0.939 | 0.387 | 0.655 | 1.1e-71 | |
| UNIPROTKB|E2R316 | 483 | DDX55 "Uncharacterized protein | 0.930 | 0.443 | 0.467 | 1e-45 | |
| UNIPROTKB|F1P8J6 | 599 | DDX55 "Uncharacterized protein | 0.930 | 0.357 | 0.467 | 1e-45 | |
| UNIPROTKB|F6XWM4 | 734 | DDX55 "Uncharacterized protein | 0.930 | 0.291 | 0.467 | 2.5e-45 | |
| UNIPROTKB|F1NJA0 | 591 | DDX55 "ATP-dependent RNA helic | 0.930 | 0.362 | 0.462 | 3.4e-45 | |
| UNIPROTKB|Q5ZLN8 | 591 | DDX55 "ATP-dependent RNA helic | 0.930 | 0.362 | 0.462 | 3.4e-45 | |
| UNIPROTKB|F1MW45 | 601 | DDX55 "ATP-dependent RNA helic | 0.930 | 0.356 | 0.471 | 7.1e-45 | |
| UNIPROTKB|Q2NL08 | 601 | DDX55 "ATP-dependent RNA helic | 0.930 | 0.356 | 0.471 | 7.1e-45 | |
| MGI|MGI:1915098 | 600 | Ddx55 "DEAD (Asp-Glu-Ala-Asp) | 0.930 | 0.356 | 0.458 | 9.1e-45 |
| TAIR|locus:2153564 AT5G05450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 170/227 (74%), Positives = 195/227 (85%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS+QIY+VAQPF+STL +V SVLLVGG EVKAD+K IEEEG N+LIGTPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL DIMERM++LDFRNLEIL+LDEADRLL+MGFQ+Q++YIISRLPK RRTGLFSATQTE
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
VEEL+KAGLRNPVRVEVRA+SKS SSQQL +SKTP GLHLEY+ECE D+K SQLVD
Sbjct: 212 VEELAKAGLRNPVRVEVRAKSKSE----SSQQLTNSKTPSGLHLEYMECEADKKSSQLVD 267
Query: 181 LLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
LL +FMTCA VDYWG+VL ++ LKS+SLIP+HG MKQ
Sbjct: 268 LLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQ 314
|
|
| TAIR|locus:2825324 AT1G71370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 150/229 (65%), Positives = 177/229 (77%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS+QI+ VA+PF+STLP+V SVLLVGG EV+AD+ +EEEGANLLIGTPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+M+RM+ LDFRNLEIL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFSATQT+A
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 211
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
V +L+KAGLRN + V AESKS KT GL+ EYL+CE D+K SQLV
Sbjct: 212 VADLAKAGLRNAMEVISGAESKS-------------KTSSGLYCEYLKCEADQKSSQLVH 258
Query: 181 LLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229
LL +FMTCACVDYWG+VL ++ LKS+S HGKM Q G
Sbjct: 259 LLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKG 307
|
|
| UNIPROTKB|E2R316 DDX55 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 107/229 (46%), Positives = 147/229 (64%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+II+PTREL+ Q+ V F + P +L +GG DV + +E+G N+++ TPGRL
Sbjct: 86 IIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQGGNIIVATPGRL 145
Query: 63 YDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117
D+ R ++ LD ++LE+LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSATQ
Sbjct: 146 EDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQ 205
Query: 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQ 177
T+ VE L +AGLRNPVR+ V+ + V+ASS Q KTP L Y+ C+ DEK +Q
Sbjct: 206 TQEVESLVRAGLRNPVRISVKEKG----VAASSTQ----KTPSRLENYYMVCKADEKFNQ 257
Query: 178 LVDLLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
LV L +F TCACV+Y+G L A++KS+ ++ +HGKMK
Sbjct: 258 LVHFLRNHKQEKHLIFFSTCACVEYYGKALE--ALVKSVKIMCIHGKMK 304
|
|
| UNIPROTKB|F1P8J6 DDX55 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 107/229 (46%), Positives = 147/229 (64%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+II+PTREL+ Q+ V F + P +L +GG DV + +E+G N+++ TPGRL
Sbjct: 86 IIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQGGNIIVATPGRL 145
Query: 63 YDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117
D+ R ++ LD ++LE+LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSATQ
Sbjct: 146 EDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQ 205
Query: 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQ 177
T+ VE L +AGLRNPVR+ V+ + V+ASS Q KTP L Y+ C+ DEK +Q
Sbjct: 206 TQEVESLVRAGLRNPVRISVKEKG----VAASSTQ----KTPSRLENYYMVCKADEKFNQ 257
Query: 178 LVDLLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
LV L +F TCACV+Y+G L A++KS+ ++ +HGKMK
Sbjct: 258 LVHFLRNHKQEKHLIFFSTCACVEYYGKALE--ALVKSVKIMCIHGKMK 304
|
|
| UNIPROTKB|F6XWM4 DDX55 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 2.5e-45, P = 2.5e-45
Identities = 107/229 (46%), Positives = 147/229 (64%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+II+PTREL+ Q+ V F + P +L +GG DV + +E+G N+++ TPGRL
Sbjct: 221 IIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQGGNIIVATPGRL 280
Query: 63 YDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117
D+ R ++ LD ++LE+LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSATQ
Sbjct: 281 EDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQ 340
Query: 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQ 177
T+ VE L +AGLRNPVR+ V+ + V+ASS Q KTP L Y+ C+ DEK +Q
Sbjct: 341 TQEVESLVRAGLRNPVRISVKEKG----VAASSTQ----KTPSRLENYYMVCKADEKFNQ 392
Query: 178 LVDLLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
LV L +F TCACV+Y+G L A++KS+ ++ +HGKMK
Sbjct: 393 LVHFLRNHKQEKHLIFFSTCACVEYYGKALE--ALVKSVKIMCIHGKMK 439
|
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| UNIPROTKB|F1NJA0 DDX55 "ATP-dependent RNA helicase DDX55" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 106/229 (46%), Positives = 145/229 (63%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGRL
Sbjct: 86 IIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGRL 145
Query: 63 YDIMERM-DVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117
D+ R D LD ++L++LVLDEADRLLDMGF+ ++ I++ LPK RRTGLFSATQ
Sbjct: 146 EDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSATQ 205
Query: 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQ 177
T+ VE L +AGLRNPVR+ V+ + V+A++ Q KTP L Y+ C+ DEK +Q
Sbjct: 206 TQEVENLVRAGLRNPVRISVKEKG----VAATNTQ----KTPTRLENYYMICKADEKFNQ 257
Query: 178 LVDLLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
LV L +F TCACV+Y+G L L +K + ++ +HGKMK
Sbjct: 258 LVHFLRQHKQEKHLVFFSTCACVEYYGKALESL--IKQVKIMCIHGKMK 304
|
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| UNIPROTKB|Q5ZLN8 DDX55 "ATP-dependent RNA helicase DDX55" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 106/229 (46%), Positives = 145/229 (63%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGRL
Sbjct: 86 IIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGRL 145
Query: 63 YDIMERM-DVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117
D+ R D LD ++L++LVLDEADRLLDMGF+ ++ I++ LPK RRTGLFSATQ
Sbjct: 146 EDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSATQ 205
Query: 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQ 177
T+ VE L +AGLRNPVR+ V+ + V+A++ Q KTP L Y+ C+ DEK +Q
Sbjct: 206 TQEVENLVRAGLRNPVRISVKEKG----VAATNTQ----KTPTRLENYYMICKADEKFNQ 257
Query: 178 LVDLLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
LV L +F TCACV+Y+G L L +K + ++ +HGKMK
Sbjct: 258 LVHFLRQHKQEKHLVFFSTCACVEYYGKALESL--IKQVKIMCIHGKMK 304
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| UNIPROTKB|F1MW45 DDX55 "ATP-dependent RNA helicase DDX55" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 108/229 (47%), Positives = 142/229 (62%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+II+PTREL+ QI V F P +L +GG DV + +E G N+++ TPGRL
Sbjct: 86 IIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGGNIIVATPGRL 145
Query: 63 YDIMERM-DVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117
D+ R + LD R+LE+LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSATQ
Sbjct: 146 EDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSATQ 205
Query: 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQ 177
T+ VE L +AGLRNPVR+ V+ + V+ASS Q KTP L Y+ C+ DEK +Q
Sbjct: 206 TQEVENLVRAGLRNPVRISVKEKG----VAASSTQ----KTPSRLENHYMVCKADEKFNQ 257
Query: 178 LVDLLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
LV L +F TCACV+Y+G L L +K + ++ +HGKMK
Sbjct: 258 LVHFLRNHKQEKHLVFFSTCACVEYYGKALETL--VKGVKIMCIHGKMK 304
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| UNIPROTKB|Q2NL08 DDX55 "ATP-dependent RNA helicase DDX55" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 108/229 (47%), Positives = 142/229 (62%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+II+PTREL+ QI V F P +L +GG DV + +E G N+++ TPGRL
Sbjct: 86 IIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGGNIIVATPGRL 145
Query: 63 YDIMERM-DVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117
D+ R + LD R+LE+LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSATQ
Sbjct: 146 EDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSATQ 205
Query: 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQ 177
T+ VE L +AGLRNPVR+ V+ + V+ASS Q KTP L Y+ C+ DEK +Q
Sbjct: 206 TQEVENLVRAGLRNPVRISVKEKG----VAASSTQ----KTPSRLENHYMVCKADEKFNQ 257
Query: 178 LVDLLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
LV L +F TCACV+Y+G L L +K + ++ +HGKMK
Sbjct: 258 LVHFLRNHKQEKHLVFFSTCACVEYYGKALETL--VKGVKIMCIHGKMK 304
|
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| MGI|MGI:1915098 Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 105/229 (45%), Positives = 144/229 (62%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++I+PTREL+ QI V F P +L +GG DV++ ++ G N+++ TPGRL
Sbjct: 86 IVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGRL 145
Query: 63 YDIMERM-DVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117
D+ R + LD ++L++LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSATQ
Sbjct: 146 EDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQ 205
Query: 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQ 177
T+ VE L +AGLRNPVR+ V+ + V+ASS Q KTP L Y+ C+ DEK +Q
Sbjct: 206 TQEVENLVRAGLRNPVRISVKEKG----VAASSTQ----KTPSRLENHYMICKADEKFNQ 257
Query: 178 LVDLLXXXXXXXXXXYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226
LV L +F TCACV+Y+G L A+LK + ++ +HGKMK
Sbjct: 258 LVHFLRSRQQEKHLVFFSTCACVEYYGKALE--ALLKKVKILCIHGKMK 304
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FLB0 | RH18_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.7753 | 0.9695 | 0.3760 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00029362001 | SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (463 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00000559001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (169 aa) | • | 0.500 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 230 | |||
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-53 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 9e-50 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 9e-36 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-34 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-28 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 3e-28 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 3e-27 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 1e-26 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 1e-24 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 3e-24 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 6e-23 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 4e-22 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 8e-22 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 7e-20 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 4e-19 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 1e-53
Identities = 60/136 (44%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+I++PTREL+ QI VA+ ++K V++ GG + ++K++ G ++++ TPG
Sbjct: 71 QALILAPTRELALQIAEVARKLGK-HTNLKVVVIYGGTSIDKQIRKLKR-GPHIVVATPG 128
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D++ER LD ++ LVLDEADR+LDMGF+ QI I+ LPK R+T LFSAT +
Sbjct: 129 RLLDLLERG-KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKE 187
Query: 121 VEELSKAGLRNPVRVE 136
V +L++ LRNPVR+
Sbjct: 188 VRDLARKFLRNPVRIL 203
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 9e-50
Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 26/229 (11%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTREL+ QI + L ++ ++ GGV ++ ++ ++ G ++++ TPGRL
Sbjct: 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRL 161
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D+++R LD +E LVLDEADR+LDMGF I I+ LP R+T LFSAT + +
Sbjct: 162 LDLIKR-GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIR 220
Query: 123 ELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEP-DEKPSQLVDL 181
EL++ L +PV +EV E +T + YLE E +EK L+ L
Sbjct: 221 ELARRYLNDPVEIEVSVE-------------KLERTLKKIKQFYLEVESEEEKLELLLKL 267
Query: 182 LIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIP---LHGKMKQ 227
L ++I++ T V+ LA LHG + Q
Sbjct: 268 LKDEDEGRVIVFVRTKRLVE-------ELAESLRKRGFKVAALHGDLPQ 309
|
Length = 513 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 9e-36
Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 38/233 (16%)
Query: 3 MIISPTRELSSQIYHVAQPFISTL----PDVKSVLLVGGVEVKADVKKIEEEGANLLIGT 58
+++ PTREL+ Q VA+ I L P++K + L GGV + + +E GA++++GT
Sbjct: 76 LVLCPTRELADQ---VAKE-IRRLARFIPNIKVLTLCGGVPMGPQIDSLEH-GAHIIVGT 130
Query: 59 PGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR+ D + + LD L LVLDEADR+LDMGFQ I II + P R+T LFSAT
Sbjct: 131 PGRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189
Query: 119 EAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQL 178
E + +S+ R+PV V+V + H + A Q+ + E PDE+ L
Sbjct: 190 EGIAAISQRFQRDPVEVKVEST---HDLPAIEQR-------------FYEVSPDERLPAL 233
Query: 179 VDLLIKNKSKKIIIYFMTC----ACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
LL+ ++ + +++ C C + V L + S + LHG ++Q
Sbjct: 234 QRLLLHHQPESCVVF---CNTKKECQE----VADALNA-QGFSALALHGDLEQ 278
|
Length = 460 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-34
Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 1/124 (0%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
++++PTREL+ QIY + L ++ LL GG +K +K+++ A++L+GTPG
Sbjct: 47 QALVLAPTRELAEQIYEELKKLFKILG-LRVALLTGGTSLKEQARKLKKGKADILVGTPG 105
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D++ R + +NL++LVLDEA RLLDMGF + I+SRLP R+ L SAT
Sbjct: 106 RLLDLLRRGKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLPPDRQILLLSATLPRN 165
Query: 121 VEEL 124
+E+L
Sbjct: 166 LEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-28
Identities = 50/135 (37%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY 63
++ PTREL+ Q + +L +K V L GG + ++K+E ++L+ TPGRL
Sbjct: 59 VLVPTRELAEQWAEELKKLGPSLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLL 117
Query: 64 DIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEE 123
D++E D L N+++++LDEA RLLD GF Q+ ++ LPK + L SAT E +E
Sbjct: 118 DLLEN-DKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIEN 176
Query: 124 LSKAGLRNPVRVEVR 138
L + L +PV ++V
Sbjct: 177 LLELFLNDPVFIDVG 191
|
Length = 201 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-28
Identities = 56/146 (38%), Positives = 95/146 (65%), Gaps = 4/146 (2%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTREL++QI + + L +++S+++ GGV + + K+ G ++L+ TPGRL
Sbjct: 79 LILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRG-GVDVLVATPGRL 136
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D +E + + +EILVLDEADR+LDMGF I ++++LP R+ LFSAT ++ ++
Sbjct: 137 LD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIK 195
Query: 123 ELSKAGLRNPVRVEV-RAESKSHHVS 147
L++ L NP+ +EV R + S V+
Sbjct: 196 ALAEKLLHNPLEIEVARRNTASEQVT 221
|
Length = 456 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-27
Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTREL+ QI+ A+P +K L GG +K +E G ++LIGT GRL
Sbjct: 87 LIMAPTRELAVQIHADAEPLAQA-TGLKLGLAYGGDGYDKQLKVLES-GVDILIGTTGRL 144
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEA 120
D + + ++ ++++VLDEADR+ D+GF K I ++ R+P R LFSAT +
Sbjct: 145 IDYA-KQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYR 203
Query: 121 VEELSKAGLRNPVRVEVRAESKSHH 145
V EL+ + NP VEV E K+ H
Sbjct: 204 VRELAFEHMNNPEYVEVEPEQKTGH 228
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Length = 423 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-26
Identities = 58/144 (40%), Positives = 88/144 (61%), Gaps = 6/144 (4%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+II+PTREL QI A ++ + + VGG++ +K++E ++L+ TPGRL
Sbjct: 166 LIIAPTRELVVQIAKDAAA-LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRL 224
Query: 63 YDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSATQTE 119
D +R +V LD +E++VLDEADR+LDMGF Q+ II + P+ R+T LFSAT T+
Sbjct: 225 LDFNQRGEVHLDM--VEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTD 282
Query: 120 AVEELSKAGLRNPVRVEVRAESKS 143
V L+K +P VE+ E+ +
Sbjct: 283 DVMNLAKQWTTDPAIVEIEPENVA 306
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Length = 475 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-24
Identities = 53/141 (37%), Positives = 89/141 (63%), Gaps = 4/141 (2%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTREL+ QI+ A F + L ++ L+ GGV+ +++ ++G +++I TPGRL
Sbjct: 88 LILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRL 145
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEA 120
D +++ V+ EI VLDEADR+ D+GF K I +++ R+P+ R+T LFSAT +
Sbjct: 146 IDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHR 205
Query: 121 VEELSKAGLRNPVRVEVRAES 141
V EL+ + P ++ V E+
Sbjct: 206 VLELAYEHMNEPEKLVVETET 226
|
Length = 572 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 3e-24
Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 23/226 (10%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTREL+ QI V L V+ VGG V+ D+ K++ G ++++GTPGR+
Sbjct: 100 LILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKA-GVHMVVGTPGRV 157
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
YD++++ L +L++ +LDEAD +L GF+ QI + +LP + LFSAT +
Sbjct: 158 YDMIDK-RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEIL 216
Query: 123 ELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDE-KPSQLVDL 181
EL+ +R+P R+ V+ + T G+ Y+ E +E K L DL
Sbjct: 217 ELTTKFMRDPKRILVKKD---------------ELTLEGIRQFYVAVEKEEWKFDTLCDL 261
Query: 182 LIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
+ IIY T VDY L + + ++ +HG M Q
Sbjct: 262 YETLTITQAIIYCNTRRKVDY----LTKKMHERDFTVSCMHGDMDQ 303
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Length = 401 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 6e-23
Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 24/228 (10%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++++PTREL+ QI F +++ + GGV + + + G +LI PGRL
Sbjct: 207 LVLAPTRELAEQIREQCNKF-GASSKIRNTVAYGGVPKRGQIYALRR-GVEILIACPGRL 264
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D +E +V + R + LVLDEADR+LDMGF+ QI I+S++ R+T ++SAT + V+
Sbjct: 265 IDFLES-NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQ 323
Query: 123 ELSKAGLRN-PVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDL 181
L++ + PV HV+ S L + + E E EK +L L
Sbjct: 324 SLARDLCKEEPV-----------HVNVGSLDLTACHN---IKQEVFVVEEHEKRGKLKML 369
Query: 182 L--IKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
L I KI+I+ T D L + L + +HG KQ
Sbjct: 370 LQRIMRDGDKILIFVETKKGAD----FLTKELRLDGWPALCIHGDKKQ 413
|
Length = 545 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 4e-22
Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++++PTREL+ Q+ F + V V L GG ++ + + G +++GTPGRL
Sbjct: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIVVGTPGRL 136
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D ++R LD L LVLDEAD +L MGF + + I++++P+ +T LFSAT EA+
Sbjct: 137 LDHLKR-GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIR 195
Query: 123 ELSKAGLRNPVRVEVRAES 141
+++ ++ P EVR +S
Sbjct: 196 RITRRFMKEP--QEVRIQS 212
|
Length = 629 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 8e-22
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY 63
+++PTREL++Q+ + +K L+GG +K K + ++++GTPGRL
Sbjct: 35 VLAPTRELANQVAERLKELFG--EGIKVGYLIGGTSIKQQEKLLSG-KTDIVVGTPGRLL 91
Query: 64 DIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
D +ER L + L++L+LDEA RLL+ GF I+ +LPK R+ L SAT
Sbjct: 92 DELER-LKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSAT 143
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 7e-20
Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 4/137 (2%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+ M+++PTREL Q+ A+ LP K+ L+VGG + + +I++ G L++GTPG
Sbjct: 198 LAMVLTPTRELCVQVEDQAKVLGKGLP-FKTALVVGGDAMPQQLYRIQQ-GVELIVGTPG 255
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D++ + D+ + N+ +LVLDE D +L+ GF+ Q+ I L + + LFSAT +
Sbjct: 256 RLIDLLSKHDI-ELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQ-PQVLLFSATVSPE 313
Query: 121 VEELSKAGLRNPVRVEV 137
VE+ + + ++ + + +
Sbjct: 314 VEKFASSLAKDIILISI 330
|
Length = 518 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 4e-19
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 11/149 (7%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTREL+ Q+ A+ + + + GGV + ++ E ++++ TPGRL
Sbjct: 77 LILTPTRELAMQVADQAREL-AKHTHLDIATITGGVAY-MNHAEVFSENQDIVVATPGRL 134
Query: 63 YDIMERMDVLDF--RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTE 119
++ + +F R +E L+LDEADR+LDMGF + I I + ++T LFSAT + +
Sbjct: 135 ---LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGD 191
Query: 120 AVEELSKAGLRNPVRVEV---RAESKSHH 145
AV++ ++ L +PV VE R E K H
Sbjct: 192 AVQDFAERLLNDPVEVEAEPSRRERKKIH 220
|
Length = 434 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 230 | |||
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.97 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.95 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.95 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.94 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.93 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.93 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.92 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.92 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.91 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.91 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.91 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.91 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.91 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.9 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.9 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.9 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.9 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.89 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.88 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.87 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.87 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.87 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.87 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.87 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.87 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.86 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.86 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.85 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.85 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.84 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.84 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.82 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.79 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.79 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.79 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.79 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.76 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.73 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.72 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.72 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.71 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.7 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.69 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.68 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.68 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.66 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.63 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.63 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.56 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.56 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.56 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.56 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.53 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.52 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.52 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.51 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.46 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.46 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.45 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.45 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.43 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.41 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.34 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.33 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.33 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.31 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.3 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.14 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.12 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.1 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.03 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 98.89 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 98.84 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 98.79 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 98.77 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.77 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.76 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.65 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.58 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.57 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.57 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.47 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 98.39 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.28 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.28 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.24 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.22 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.21 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 98.13 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 98.12 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 98.04 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 98.02 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 97.92 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 97.91 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 97.91 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 97.89 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 97.83 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 97.81 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 97.81 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 97.73 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 97.67 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 97.65 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 97.64 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 97.57 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 97.44 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 97.42 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 97.4 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 97.36 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 97.36 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.29 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 97.15 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 97.05 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 96.95 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 96.95 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 96.82 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 96.67 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 96.63 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 96.6 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 96.25 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.17 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 95.97 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 95.65 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 95.6 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 95.42 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 95.27 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 95.25 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 94.65 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 93.9 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 93.89 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 93.5 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 93.4 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 93.36 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 93.15 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 93.08 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 92.92 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 92.74 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 92.67 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 92.66 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 92.61 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 92.56 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 92.42 | |
| KOG3089 | 271 | consensus Predicted DEAD-box-containing helicase [ | 92.32 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 92.3 | |
| cd01524 | 90 | RHOD_Pyr_redox Member of the Rhodanese Homology Do | 91.87 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 91.52 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 91.47 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 91.36 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 91.34 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 91.22 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 91.22 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 91.02 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 90.93 | |
| cd01523 | 100 | RHOD_Lact_B Member of the Rhodanese Homology Domai | 90.57 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 90.53 | |
| PTZ00110 | 545 | helicase; Provisional | 90.41 | |
| smart00450 | 100 | RHOD Rhodanese Homology Domain. An alpha beta fold | 90.26 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 89.95 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 89.9 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 89.83 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 89.75 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 89.73 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 89.65 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 89.55 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 89.47 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 89.42 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 89.13 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 89.08 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 88.87 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 88.68 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 88.27 | |
| cd01529 | 96 | 4RHOD_Repeats Member of the Rhodanese Homology Dom | 88.15 | |
| PTZ00424 | 401 | helicase 45; Provisional | 87.87 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 87.86 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 87.86 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 87.85 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 87.53 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 87.45 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 87.03 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 87.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 86.97 | |
| cd01526 | 122 | RHOD_ThiF Member of the Rhodanese Homology Domain | 86.86 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 86.79 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 86.7 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 86.5 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 86.15 | |
| cd01534 | 95 | 4RHOD_Repeat_3 Member of the Rhodanese Homology Do | 85.99 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 85.97 | |
| cd01521 | 110 | RHOD_PspE2 Member of the Rhodanese Homology Domain | 85.97 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 85.86 | |
| cd01518 | 101 | RHOD_YceA Member of the Rhodanese Homology Domain | 85.68 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 85.64 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 85.55 | |
| cd01527 | 99 | RHOD_YgaP Member of the Rhodanese Homology Domain | 85.39 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 85.02 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 84.82 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 84.45 | |
| cd01533 | 109 | 4RHOD_Repeat_2 Member of the Rhodanese Homology Do | 84.39 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 84.35 | |
| cd01519 | 106 | RHOD_HSP67B2 Member of the Rhodanese Homology Doma | 84.17 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 84.05 | |
| cd01532 | 92 | 4RHOD_Repeat_1 Member of the Rhodanese Homology Do | 84.02 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 83.91 | |
| PRK08727 | 233 | hypothetical protein; Validated | 83.82 | |
| PF13173 | 128 | AAA_14: AAA domain | 83.68 | |
| cd01444 | 96 | GlpE_ST GlpE sulfurtransferase (ST) and homologs a | 83.67 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 83.6 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 83.52 | |
| cd01520 | 128 | RHOD_YbbB Member of the Rhodanese Homology Domain | 83.43 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 83.16 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 83.07 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 82.85 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 82.75 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 82.68 | |
| cd00158 | 89 | RHOD Rhodanese Homology Domain (RHOD); an alpha be | 82.34 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 82.15 | |
| cd01449 | 118 | TST_Repeat_2 Thiosulfate sulfurtransferase (TST), | 82.04 | |
| cd01448 | 122 | TST_Repeat_1 Thiosulfate sulfurtransferase (TST), | 81.3 | |
| cd01447 | 103 | Polysulfide_ST Polysulfide-sulfurtransferase - Rho | 81.24 | |
| cd01528 | 101 | RHOD_2 Member of the Rhodanese Homology Domain sup | 81.24 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 81.05 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 81.0 | |
| PRK05320 | 257 | rhodanese superfamily protein; Provisional | 80.71 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 80.42 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 80.4 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 80.12 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 80.07 |
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=289.06 Aligned_cols=209 Identities=33% Similarity=0.503 Sum_probs=192.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||||||.|+.+++..++..+ .++..+++||.+...|...+ +.+.||+|+||+++.+++.. +..+++++.++
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l-~~gvdiviaTPGRl~d~le~-g~~~l~~v~yl 243 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDL-ERGVDVVIATPGRLIDLLEE-GSLNLSRVTYL 243 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHH-hcCCcEEEeCChHHHHHHHc-CCccccceeEE
Confidence 47999999999999999999999887 68999999999999999999 68999999999999999999 99999999999
Q ss_pred EEeccccccccccHHHHHHHHHhC-CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||+|++.||.++++.|++.+ +...|+++||||||.+++.++..|+.+|..+.+..... ....
T Consensus 244 VLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~-------------~~a~ 310 (519)
T KOG0331|consen 244 VLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKE-------------LKAN 310 (519)
T ss_pred EeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhh-------------hhhh
Confidence 999999999999999999999999 55668999999999999999999999999988865511 4567
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.++.|....++...|...+..+|... ...|+||||+|++.|+++++.|... |+++.++||+.+|+|
T Consensus 311 ~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~e 379 (519)
T KOG0331|consen 311 HNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSE 379 (519)
T ss_pred cchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHH
Confidence 88899999999989999999988755 4569999999999999999999988 899999999999976
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=271.26 Aligned_cols=207 Identities=36% Similarity=0.623 Sum_probs=199.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++||+||||||.||..+++.|+... ++++..+.||.....+...+ .++|||||+||++|.+++.+++.|+++.++++
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L-~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQL-SKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHh-hcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 58999999999999999999999888 99999999999999888888 68999999999999999998799999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++++..|.+.+..|++.+|..+|+++||||++..+.++....+.+|+.+.+... +.+.+
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k---------------y~tv~ 273 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK---------------YQTVD 273 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccch---------------hcchH
Confidence 999999999999999999999999999999999999999999999999999999999888 88999
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.++|+|..++..+|...|.++++...+.+.||||+|...++.++-.|+.. |+.+..+||+|+|+
T Consensus 274 ~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l----g~~a~~LhGqmsq~ 337 (476)
T KOG0330|consen 274 HLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL----GFQAIPLHGQMSQS 337 (476)
T ss_pred HhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc----CcceecccchhhHH
Confidence 99999999999999999999999998899999999999999999999999 99999999999986
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=258.47 Aligned_cols=207 Identities=32% Similarity=0.488 Sum_probs=198.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
||+|++||||||.|+.+++..++.+. ++.+..+.||.+..++++.+ .-|++++.|||+++.+++++ +.+.-+.++++
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkl-d~G~hvVsGtPGrv~dmikr-~~L~tr~vkml 173 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKL-DYGQHVVSGTPGRVLDMIKR-RSLRTRAVKML 173 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhh-cccceEeeCCCchHHHHHHh-ccccccceeEE
Confidence 68999999999999999999999988 89999999999999999988 58999999999999999999 99999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||.|++.+|.+.+..|.+++|+..|++++|||+|.++.++.++|+.+|+.+.+.+. ..+.+
T Consensus 174 VLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd---------------eltlE 238 (400)
T KOG0328|consen 174 VLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD---------------ELTLE 238 (400)
T ss_pred EeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC---------------CCchh
Confidence 999999999999999999999999999999999999999999999999999999999888 67889
Q ss_pred cceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.++++|+.++.++ |.+.|++|.....-.+++|||||++.++.|...+++. ++.+.++||+|+|+|
T Consensus 239 gIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~----nftVssmHGDm~qkE 304 (400)
T KOG0328|consen 239 GIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMEQKE 304 (400)
T ss_pred hhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh----CceeeeccCCcchhH
Confidence 9999999999877 9999999999998899999999999999999999998 999999999999987
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=285.47 Aligned_cols=209 Identities=35% Similarity=0.581 Sum_probs=194.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||||||.|+++++++++...+++++..++||.+...+...+ +.++||+||||+++++++.. +.+++++++++|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l-~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lV 179 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL-KRGVDIVVATPGRLLDLIKR-GKLDLSGVETLV 179 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH-hcCCCEEEECccHHHHHHHc-CCcchhhcCEEE
Confidence 7999999999999999999999876468999999999999999888 45799999999999999999 799999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||.|++.||.+++..|++.+|.+.|+++||||+++.+..+.+.++.+|..+.+..... ......
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~-------------~~~~~~ 246 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKL-------------ERTLKK 246 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccc-------------cccccC
Confidence 9999999999999999999999999999999999999999999999999999888875511 237899
Q ss_pred ceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+.|+++.++..+ |...|..++......++||||+|+..|++++..|... |+++..+||+|+|++
T Consensus 247 i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~ 311 (513)
T COG0513 247 IKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEE 311 (513)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHH
Confidence 999999999876 9999999999888889999999999999999999998 999999999999874
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=266.76 Aligned_cols=210 Identities=39% Similarity=0.607 Sum_probs=198.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
||||+||||||.|++.++.+.+.+. ++..+++.||.....+..++ .+.+|+||||++|+++|+.+..+..++++++|
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi--~~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERI--SQMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhh--hcCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 7999999999999999999999887 89999999999988777777 67999999999999999988889999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||++++.||...+..|++++|..+|+++||||.+..+..+++..+.+|..|.++.... ..+|++
T Consensus 221 LDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~-------------~atP~~ 287 (758)
T KOG0343|consen 221 LDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAV-------------AATPSN 287 (758)
T ss_pred eccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecccc-------------ccChhh
Confidence 9999999999999999999999999999999999999999999999999999999875522 579999
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++|+|+.++..+|+++|+..++.+...++|||.+|.+.+..++..|.++ .+|++..++||.|.|+.
T Consensus 288 L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl--rpg~~l~~L~G~~~Q~~ 353 (758)
T KOG0343|consen 288 LQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL--RPGIPLLALHGTMSQKK 353 (758)
T ss_pred hhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc--CCCCceeeeccchhHHH
Confidence 9999999999999999999999999999999999999999999999999 89999999999999863
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=259.29 Aligned_cols=213 Identities=61% Similarity=0.967 Sum_probs=199.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~l 80 (230)
+|||+||||||.||..++..|...++++.+.++.||.+.+++++.+.+++++|+||||++|.+++++ ...+++++++++
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 7999999999999999999999998899999999999999999999999999999999999999987 344567799999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++++.||...++.|++.+|+.+++.+||||.+..+..+...+++||+.+.+..... ..+|+
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~-------------~~tPS 228 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSK-------------SATPS 228 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeeccccc-------------ccCch
Confidence 99999999999999999999999999999999999999999999999999999999888732 33899
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+..+|+.|++.+|...+.++|.+...+++|||.+|-.+++..+..|... .++.+..++||.|.+++
T Consensus 229 ~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~--l~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 229 SLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL--LKKREIFSIHGKMSQKA 295 (567)
T ss_pred hhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH--hCCCcEEEecchhcchh
Confidence 99999999999999999999999999999999999999999999999988 56889999999999873
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=247.77 Aligned_cols=206 Identities=31% Similarity=0.466 Sum_probs=196.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
|++|++||||||.|+...+.+++..+ +++++.-+||.+..+++-++ ..+.|++||||++++++++. +.-.+++..++
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl-~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~l 231 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRL-NQTVHLVVGTPGRILDLAKK-GVADLSDCVIL 231 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeee-cCceEEEEcCChhHHHHHhc-ccccchhceEE
Confidence 58999999999999999999999998 89999999999999888888 78999999999999999998 88889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||.+++..|.+.+++++..+|+++|++++|||+|-.+..+..+++.+|..|..-.+ .++.
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e----------------Ltl~ 295 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE----------------LTLK 295 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh----------------hhhc
Confidence 999999999999999999999999999999999999999999999999999999987666 6889
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.|+|..+++..|.--|..|+.+..-.++||||||.+++|-+|+.+.+. |+++..+|+.|.|+.
T Consensus 296 GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel----GyscyyiHakM~Q~h 360 (459)
T KOG0326|consen 296 GVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL----GYSCYYIHAKMAQEH 360 (459)
T ss_pred chhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc----cchhhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999 999999999998763
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=256.63 Aligned_cols=207 Identities=33% Similarity=0.524 Sum_probs=193.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||||||.|++.+.++++.+. ++.++++.||-+...|...+ +..|||+|+||+++.++++++..|.+.++..+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~L-Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVL-RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHH-hhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 7999999999999999999999887 89999999999998888777 789999999999999999999999999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||+|++.+|.+.+..|++.+|+++|+++||||+++.+..++...+..|+.|.+.+. ..++..
T Consensus 333 lDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~---------------~~~a~~ 397 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPN---------------KDTAPK 397 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCc---------------cccchh
Confidence 99999999999999999999999999999999999999999999999999999999888 678889
Q ss_pred ceEEEEEcCC---CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEP---DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~---~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+.|-|+.+.+ ..+-..+..++...-..+++||+.|++.|.++.-.|--. |+++.-+||+|+|.|
T Consensus 398 LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl----gl~agElHGsLtQ~Q 464 (691)
T KOG0338|consen 398 LTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL----GLKAGELHGSLTQEQ 464 (691)
T ss_pred hhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh----hchhhhhcccccHHH
Confidence 9988887764 357788888888777789999999999999999999877 999999999999976
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=255.68 Aligned_cols=207 Identities=34% Similarity=0.578 Sum_probs=189.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++||++||+|||.|+.+.++.++...+++++..++||.+...+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l-~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~l 151 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL-EHGAHIIVGTPGRILDHLRK-GTLDLDALNTL 151 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCccHHHCCEE
Confidence 47999999999999999999998877679999999999988888777 58899999999999999988 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||+|++.+|...+..+++.++...|+++||||+++.+..+...++.+|..+.+... ....
T Consensus 152 ViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~----------------~~~~ 215 (460)
T PRK11776 152 VLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST----------------HDLP 215 (460)
T ss_pred EEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcC----------------CCCC
Confidence 999999999999999999999999999999999999999999999999999998877554 2345
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.++++.++..+|...+..++......++||||+|++.|+.++..|.+. |+++..+||+|+++|
T Consensus 216 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~e 280 (460)
T PRK11776 216 AIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRD 280 (460)
T ss_pred CeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHH
Confidence 58888999998889999999999888889999999999999999999988 999999999999864
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=244.19 Aligned_cols=210 Identities=40% Similarity=0.625 Sum_probs=193.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
|+|++||||||.|++.+++.+..+.+++.+..+.||.....+...+. ++++|+|+||++|.+++++++.+..++++++|
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~-k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLV-KGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhh-ccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 79999999999999999999999887899999999999888888884 59999999999999999997888899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC-CCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||||++++.||.+++++|++.+|..+|+++||||.++.++.+++--+. +|..+.+.+... ..+.+
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~-------------~~The 302 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE-------------RETHE 302 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC-------------cchhh
Confidence 9999999999999999999999999999999999999999999998877 588888766643 56788
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCC-CeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKS-KKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~-~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.|.++.++...+...+..+|+++.. .++||||+|...+..++..|... .+++..+||+++|..
T Consensus 303 ~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~----dlpv~eiHgk~~Q~k 368 (543)
T KOG0342|consen 303 RLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI----DLPVLEIHGKQKQNK 368 (543)
T ss_pred cccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc----CCchhhhhcCCcccc
Confidence 899999999998899999999998765 89999999999999999999988 999999999999864
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=244.37 Aligned_cols=207 Identities=31% Similarity=0.487 Sum_probs=187.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++||+|||||||.||+.++++|+..+ ++++++++||-+..+|.+.|. .+|.|+|+||++|.++++- +..++.++.+|
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~Vkm-Katn~~rvS~L 374 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKM-KATNLSRVSYL 374 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHh-hcccceeeeEE
Confidence 47999999999999999999999888 999999999999999999995 9999999999999999998 89999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||+|++.||.+.++.|...+++.+|.++||||++..++.+++.++.+|+.+....- .....
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~v---------------gean~ 439 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEV---------------GEANE 439 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeeh---------------hcccc
Confidence 999999999999999999999999999999999999999999999999999998776554 34567
Q ss_pred cceEEEEEcCC-CCcHHHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEP-DEKPSQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~-~~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.|.|.+..+.. ..|+.+++.-|-. ....++|||+.-+..+++++..|.-. |+++..+||+|.|.|
T Consensus 440 dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk----~~~v~llhgdkdqa~ 506 (731)
T KOG0339|consen 440 DITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK----GFNVSLLHGDKDQAE 506 (731)
T ss_pred chhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc----cceeeeecCchhhHH
Confidence 78887777765 4577777665554 35579999999999999999999987 999999999998754
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=246.97 Aligned_cols=207 Identities=32% Similarity=0.514 Sum_probs=194.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||||||+||...-.+|+..+ +++++.+.||-+.+++--.+ +.+|+|+|+||++|.+.+.+ ..+-++++.++
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fql-s~gceiviatPgrLid~Len-r~lvl~qctyv 400 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQL-SMGCEIVIATPGRLIDSLEN-RYLVLNQCTYV 400 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhh-hccceeeecCchHHHHHHHH-HHHHhccCceE
Confidence 58999999999999999999999988 89999999999998876666 78999999999999999998 88889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCC-------------------------CcEEEEeecCchHHHHHHHhccCCCeEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKL-------------------------RRTGLFSATQTEAVEELSKAGLRNPVRV 135 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~-------------------------~q~i~~SAt~~~~~~~~~~~~~~~~~~i 135 (230)
|+||||.|++.||.+++..|+.++|.. +|+++||||.++.+..+++.||.+|+.+
T Consensus 401 vldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~v 480 (673)
T KOG0333|consen 401 VLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVV 480 (673)
T ss_pred eccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEE
Confidence 999999999999999999999999731 6999999999999999999999999999
Q ss_pred EEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCC
Q 026925 136 EVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKS 215 (230)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g 215 (230)
..+.. ....+-++|.++.+...+|...|.+++++...+|+|||+|+++.|+.+++.|.+. |
T Consensus 481 tig~~---------------gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~----g 541 (673)
T KOG0333|consen 481 TIGSA---------------GKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA----G 541 (673)
T ss_pred EeccC---------------CCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc----c
Confidence 99888 5677888999999999999999999999888889999999999999999999999 9
Q ss_pred ceEEeccCCCCCCC
Q 026925 216 LSLIPLHGKMKQVG 229 (230)
Q Consensus 216 ~~~~~lh~~~~~~e 229 (230)
+++..+||+-+|+|
T Consensus 542 ~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 542 YKVTTLHGGKSQEQ 555 (673)
T ss_pred ceEEEeeCCccHHH
Confidence 99999999999876
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=248.17 Aligned_cols=207 Identities=33% Similarity=0.438 Sum_probs=185.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||+|||.|++++++.++... ++++..+.||.....+...+ ..++||+|+||+++.+++.. +.+.+++++++
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~l 161 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVL-ESGVDILIGTTGRLIDYAKQ-NHINLGAIQVV 161 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcccccccEE
Confidence 37999999999999999999998877 89999999998887777777 57899999999999999987 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+||||++++++|..++..+++.++. ..|.++||||++..+..+...++.+|..+.+... ...
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~---------------~~~ 226 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE---------------QKT 226 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC---------------CcC
Confidence 99999999999999999999999984 5678999999999999999999999998877665 345
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.+.++.....+|...+..++......++||||+++..|+.++..|... |+++..+||+|+++|
T Consensus 227 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 227 GHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKK 293 (423)
T ss_pred CCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhH
Confidence 5667777777777889999999998877889999999999999999999988 999999999999865
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=257.60 Aligned_cols=208 Identities=30% Similarity=0.466 Sum_probs=190.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||+|||.|++..+.++...++++++..++|+.+...+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l-~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~l 153 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL-RQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGL 153 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcchhhceEE
Confidence 47999999999999999999998887789999999999888887777 57899999999999999988 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||.|++++|..++..|+..+|...|+++||||+|+.+..+...|+.+|..+.+... .....
T Consensus 154 VlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~---------------~~~~~ 218 (629)
T PRK11634 154 VLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS---------------VTTRP 218 (629)
T ss_pred EeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999988877655 44566
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.+.++.+...+|...+..++......++||||+|+..|++++..|.+. |+.+.++||+|++++
T Consensus 219 ~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~ 283 (629)
T PRK11634 219 DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQAL 283 (629)
T ss_pred ceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHH
Confidence 78888888888899999999999888889999999999999999999988 999999999999864
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=254.41 Aligned_cols=208 Identities=32% Similarity=0.487 Sum_probs=184.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||+|||.|+.+.+++++... ++++..++|+.+...+...+ ..+++|+|+||++|.+++.. +...+++++++
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l-~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~l 281 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYAL-RRGVEILIACPGRLIDFLES-NVTNLRRVTYL 281 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHH-HcCCCEEEECHHHHHHHHHc-CCCChhhCcEE
Confidence 37999999999999999999998776 78999999999888877777 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC-CCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||+|++++|.+.+..|+..++..+|+++||||+++.+..++..++. ++..+.+.... ....
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~--------------l~~~ 347 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD--------------LTAC 347 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc--------------cccC
Confidence 99999999999999999999999999999999999999999999998886 57666654431 1344
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.++.+.+..+++.+|...+..++... ...++||||+|++.|+.++..|... |+++.++||+++++|
T Consensus 348 ~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~e 415 (545)
T PTZ00110 348 HNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEE 415 (545)
T ss_pred CCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHH
Confidence 67788888888888999999988765 5679999999999999999999987 999999999999865
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=247.81 Aligned_cols=206 Identities=29% Similarity=0.512 Sum_probs=186.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||+|||.|+.+.++.+.... ++++..+.|+.+...+...+ .++++|+|+||+++++++.. ..+.+++++++|
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lV 154 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKL-RGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILV 154 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHH-cCCCcEEEEChHHHHHHHHc-CCcccccceEEE
Confidence 7999999999999999999998776 78999999999888777776 57899999999999999887 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||++++++|...+..++..++...|+++||||+++.+..+...++.+|..+.+... ......
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------------~~~~~~ 219 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR---------------NTASEQ 219 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc---------------cccccc
Confidence 99999999999999999999999999999999999999999999999999988877655 445677
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+.+.+..++...|...+..++.....+++||||+++..|+.++..|... |+++..+||+|+++|
T Consensus 220 i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~ 283 (456)
T PRK10590 220 VTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGA 283 (456)
T ss_pred eeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHH
Confidence 8888888888888888888888877889999999999999999999988 999999999998754
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=243.00 Aligned_cols=207 Identities=35% Similarity=0.519 Sum_probs=189.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++||||||.|++++++++.... .++...++|+.+...+...+ .++|||+|+||++|.+++.. +.+.+.+++++
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~-~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~ 230 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFI-KRGCDILVATPGRLKDLIER-GKISLDNCKFL 230 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhh-ccCccEEEecCchhhhhhhc-ceeehhhCcEE
Confidence 37999999999999999999998766 79999999998888888888 68999999999999999999 99999999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCC----CCcEEEEeecCchHHHHHHHhccCC-CeEEEEeccCcccccccchhccc
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPK----LRRTGLFSATQTEAVEELSKAGLRN-PVRVEVRAESKSHHVSASSQQLA 154 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~----~~q~i~~SAt~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 154 (230)
|+||||+|++ .+|.+++++|+.+... +.|.++||||+|..+..++..++.+ ...+.+...
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv-------------- 296 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV-------------- 296 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee--------------
Confidence 9999999999 8999999999988753 7899999999999999999999886 777777777
Q ss_pred cCCCCccceEEEEEcCCCCcHHHHHHHHHhCC---------CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 155 SSKTPLGLHLEYLECEPDEKPSQLVDLLIKNK---------SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 155 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~---------~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....+++.|.+..+.+.+|...|++++.+.. .++++|||+|++.|.+++.+|... |+++..+||+.
T Consensus 297 -g~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~----~~~~~sIhg~~ 371 (482)
T KOG0335|consen 297 -GSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN----GYPAKSIHGDR 371 (482)
T ss_pred -ccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC----CCCceeecchh
Confidence 6789999999999999999999999998543 238999999999999999999988 99999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
+|.|
T Consensus 372 tq~e 375 (482)
T KOG0335|consen 372 TQIE 375 (482)
T ss_pred hhhH
Confidence 8876
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=253.26 Aligned_cols=208 Identities=32% Similarity=0.500 Sum_probs=186.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||+|||.|+++.+.+++... ++++..++|+.....+...+ ..++||+|+||++|++++...+.+.+++++++
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l-~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELL-QQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHH-hCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 37999999999999999999998876 89999999999887777666 57899999999999999987345779999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
||||||+|++++|..++..|++.++. ..|+++||||+++.+..+...++.+|..+.+... ...
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~---------------~~~ 228 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE---------------TIT 228 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc---------------ccc
Confidence 99999999999999999999999986 6899999999999999999999999887766555 345
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.+.++.....+|...+..++......++||||||+..|+.++..|.+. |+++..+||+|+++|
T Consensus 229 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~e 295 (572)
T PRK04537 229 AARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKK 295 (572)
T ss_pred ccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHH
Confidence 6678888888888889999999998888889999999999999999999988 999999999999754
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=236.29 Aligned_cols=208 Identities=24% Similarity=0.377 Sum_probs=184.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC-CceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc-ccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~-~~~~~l~ 78 (230)
.++|||||||||+|+++++.++...++ .+++.-+.++.+-......+ ...|||+|+||++++.++.. +. ..+..++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L-~d~pdIvV~TP~~ll~~~~~-~~~~~~~~l~ 172 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL-MDLPDIVVATPAKLLRHLAA-GVLEYLDSLS 172 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH-ccCCCeEEeChHHHHHHHhh-ccchhhhhee
Confidence 379999999999999999999988775 57777666555544444444 68899999999999999988 55 6789999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
++|+||||.+++.||.+++..+.+++|+..|..++|||+++++..+.+.++++|.++.+.++. ...
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e--------------l~~ 238 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE--------------LPN 238 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc--------------CCC
Confidence 999999999999999999999999999999999999999999999999999999999887774 346
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+++++|+++.|++.+|...+..+++ +.=.+++|||+||..+|-+|.-+|... |++.+++.|.||.+
T Consensus 239 ~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF----GiksciLNseLP~N 305 (569)
T KOG0346|consen 239 PDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF----GIKSCILNSELPAN 305 (569)
T ss_pred cccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh----CcHhhhhccccccc
Confidence 7999999999999999999888887 334468999999999999999999988 99999999999975
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=242.48 Aligned_cols=207 Identities=26% Similarity=0.454 Sum_probs=182.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||||||.|+++.++.+.... ++++..+.||.....+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l-~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~l 274 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRI-QQGVELIVGTPGRLIDLLSK-HDIELDNVSVL 274 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCccchheeEE
Confidence 37999999999999999999998877 68889999998888887777 57899999999999999988 78889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||+|++++|.+.+..|+..++ ..|+++||||+++.++.++..++.++..+.+... .....
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~---------------~~~~~ 338 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP---------------NRPNK 338 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC---------------CCCCc
Confidence 9999999999999999999999885 6899999999999999999999999988877655 34456
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.+.+..++..+|...+.+++... ...++||||+++..|+.++..|.... |+++..+||+|+++|
T Consensus 339 ~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~---g~~~~~~Hg~~~~~e 406 (518)
T PLN00206 339 AVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT---GLKALSIHGEKSMKE 406 (518)
T ss_pred ceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc---CcceEEeeCCCCHHH
Confidence 6788888888888888899988754 33689999999999999999997643 899999999998764
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=237.26 Aligned_cols=206 Identities=30% Similarity=0.453 Sum_probs=183.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||+|||.|+++.++.++... ++++..++|+.....+...+ .++++|+|+||+++.+++.. +.+.+++++++|
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lV 152 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVF-SENQDIVVATPGRLLQYIKE-ENFDCRAVETLI 152 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCcCcccCCEEE
Confidence 7999999999999999999998877 89999999998887776666 57899999999999999988 888999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch-HHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE-AVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||||+|++++|...+..+...++...|+++||||++. .+..+...++.+|..+..... .....
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~~ 217 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS---------------RRERK 217 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC---------------ccccc
Confidence 99999999999999999999999989999999999985 588888888889988877665 45566
Q ss_pred cceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++.+.++.++. ..|...+..+++.....++||||+++++|+.++..|... |+++..+||+|+++|
T Consensus 218 ~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~ 283 (434)
T PRK11192 218 KIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAK 283 (434)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHH
Confidence 77787777764 668899999998777789999999999999999999987 999999999998764
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=239.35 Aligned_cols=208 Identities=31% Similarity=0.443 Sum_probs=185.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||+|||.|+++.++.+.... ++++..+.||.+...+...+..++++|+|+||++|+.++.. +...+++++++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~l 241 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVM 241 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceE
Confidence 37999999999999999999998776 78999999998888787777667899999999999998887 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
||||+|++++++|...+.++++.++. ..|++++|||++.++..+...++.+|..+.+... ...
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~ 306 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE---------------NVA 306 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC---------------cCC
Confidence 99999999999999999999999864 5799999999999999999999999988877655 345
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.+.++.+...+|...+..++......++||||+++++|+.++..|.+. |+++..+||++++++
T Consensus 307 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~ 373 (475)
T PRK01297 307 SDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHK 373 (475)
T ss_pred CCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHH
Confidence 5667777888888889999999998888889999999999999999999887 999999999998754
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=240.48 Aligned_cols=207 Identities=25% Similarity=0.432 Sum_probs=191.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||||+|.||...+.+++..+.|.++....||++...+..++ ++++|+||||+++..++.. +.++.+.++++
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl--k~~rIvIGtPGRi~qL~el-~~~n~s~vrlf 171 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL--KQTRIVIGTPGRIAQLVEL-GAMNMSHVRLF 171 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh--hhceEEecCchHHHHHHHh-cCCCccceeEE
Confidence 47999999999999999999999988899999999999988888887 6788999999999999999 99999999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||.|++ ..|..++..|.+.+|..+|+++||||++..+..++.+||++|..+..... +...
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~---------------d~~L 236 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD---------------DVQL 236 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC---------------Ccee
Confidence 9999999998 56999999999999999999999999999999999999999999988777 5667
Q ss_pred ccceEEEEEcCCC--------CcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEPD--------EKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~~--------~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
-.++|+++..... .|...|-++++..+..+.||||+..-+|+-++.+|... |+++.++.|.|+|+|
T Consensus 237 ~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss----G~d~~~ISgaM~Q~~ 310 (980)
T KOG4284|consen 237 FGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS----GLDVTFISGAMSQKD 310 (980)
T ss_pred echhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc----CCCeEEeccccchhH
Confidence 7788888877653 37788888899999999999999999999999999988 999999999999976
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=225.05 Aligned_cols=206 Identities=32% Similarity=0.514 Sum_probs=192.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+|++++||||||.|+.++.+.+.... ++++..+.||.....+...+...+++|+||||+++.+++.. +.+....++++
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmf 173 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMF 173 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEE
Confidence 57899999999999999999999887 89999999999888676677677899999999999999998 78888999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||.|++.||.+.+..|.+.+|++.|++++|||.|.++....++|+.+|+.+.+... ..+.+
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~---------------~ltl~ 238 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD---------------ELTLE 238 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch---------------hhhhh
Confidence 999999999999999999999999999999999999999999999999999999999888 57899
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.|+++.+.+++|++.++.+.+ .....+|||||++.+..+...|... |+...++||+|+|.|
T Consensus 239 gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~----~~~~s~~~~d~~q~~ 301 (397)
T KOG0327|consen 239 GIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH----GFTVSAIHGDMEQNE 301 (397)
T ss_pred heeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC----CceEEEeecccchhh
Confidence 99999999999999999999998 6678999999999999999999877 999999999999875
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=233.97 Aligned_cols=228 Identities=32% Similarity=0.537 Sum_probs=188.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+|||||||||||.|+|+.+.+|...+.=+-.+.++||.....+..++ ++|++|+||||++|.+.+.++..+.+++++.+
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARL-RKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARL-RKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHH-hcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 68999999999999999999999877456777889999988888888 79999999999999999999888999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCC-------------CCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc-----Cc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLP-------------KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE-----SK 142 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~-------------~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~-----~~ 142 (230)
|+||+|++++.||.+++..|++.+. ...|-+++|||+++.+.++++.-+.+|+.|..... ++
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 9999999999999999999987772 23688999999999999999999999999983221 11
Q ss_pred ccccccchh-----ccccCCCCccceEEEEEcCCCCcHHHHHHHHHhC----CCCeEEEEcCchhHHHHHHHHhhhhhcc
Q 026925 143 SHHVSASSQ-----QLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN----KSKKIIIYFMTCACVDYWGVVLPRLAVL 213 (230)
Q Consensus 143 ~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~----~~~~~lIF~~t~~~~~~l~~~L~~~~~~ 213 (230)
...+..... ..+....|+++.++|..+++.-++..|..+|.+. ..+++|||+++.+.++.=+..|....-.
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 111111111 1233668899999999999999998888888643 6679999999999999999888765311
Q ss_pred ------------------CCceEEeccCCCCCCC
Q 026925 214 ------------------KSLSLIPLHGKMKQVG 229 (230)
Q Consensus 214 ------------------~g~~~~~lh~~~~~~e 229 (230)
-+.++.-+||+|+|+|
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Qee 485 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEE 485 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHH
Confidence 1347888999999875
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=216.58 Aligned_cols=208 Identities=30% Similarity=0.412 Sum_probs=185.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC---CcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~---~~~~~~~l 77 (230)
|++|++||||||.|+...+.-++... ++++..+.||.+.-.+...+ ..++|++|+||+++..++.++ ..+.++++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L-~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAIL-SDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhc-ccCCCeEecCccccccccccCCccchhhhhce
Confidence 68999999999999999999998877 89999999999988777777 689999999999999999874 23458999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCC--eEEEEeccCcccccccchhcccc
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNP--VRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
+++|+||||++++.+|.+.+..+.+-+|..+|..+||||+++.+.++...-...+ ..+...+.
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~--------------- 219 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDG--------------- 219 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCC---------------
Confidence 9999999999999999999999999999999999999999999888887666553 33344333
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+++.+.+.|+.++...|..++.++|+.. +...++||+|+..+|+.++..|.+. ++++.++||.|+|+|
T Consensus 220 vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l----e~r~~~lHs~m~Q~e 292 (442)
T KOG0340|consen 220 VSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL----EVRVVSLHSQMPQKE 292 (442)
T ss_pred CCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh----ceeeeehhhcchHHH
Confidence 678899999999999999999999999854 4579999999999999999999999 999999999999986
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=224.34 Aligned_cols=207 Identities=31% Similarity=0.519 Sum_probs=184.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhh-----hCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIS-----TLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~-----~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~ 75 (230)
+.|||||+||||+|+++.+..+.. .+|.++...+.||.+..++...+ +.+.||+|+||++|.+++.. +...+.
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v-~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV-RRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH-hcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 479999999999999999999876 44778999999999999998888 79999999999999999998 888899
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcccc
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
-.+++.+||||+|++.||.+++++|++++...+|+++||||+|..+..+++.-+-.|+++.+...+
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG-------------- 391 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG-------------- 391 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999998884
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...-++.|.+-.+..+.|+.++++-|-+. ..|+||||..+.+++.++.||.-. |+.+..+|||-+|++
T Consensus 392 -AAsldViQevEyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlK----GVEavaIHGGKDQed 459 (610)
T KOG0341|consen 392 -AASLDVIQEVEYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLK----GVEAVAIHGGKDQED 459 (610)
T ss_pred -ccchhHHHHHHHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHc----cceeEEeecCcchhH
Confidence 23344444455567778888888777444 369999999999999999999988 999999999999875
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=219.40 Aligned_cols=206 Identities=33% Similarity=0.538 Sum_probs=179.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||++||.|+.+.+..++... ++.+..+.|+....++...+ ..+++|+|+||+++.+++.. +.+.+++++++|
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvV 175 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKL-KAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFI 175 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHH-cCCCCEEEECcHHHHHHHHh-CCcccccccEEE
Confidence 7999999999999999999998765 78888888988877777666 46789999999999999987 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||+|++.+++|...+..+++.++...|++++|||+++.+..+...++.+|..+.+... ......
T Consensus 176 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 240 (401)
T PTZ00424 176 LDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD---------------ELTLEG 240 (401)
T ss_pred EecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC---------------CcccCC
Confidence 99999999999999999999999999999999999999999999999999887766554 334566
Q ss_pred ceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+.+++..++. ..+...+..++......++||||+|+++|+.++..|.+. |+++..+||+|+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~ 305 (401)
T PTZ00424 241 IRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKD 305 (401)
T ss_pred ceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHH
Confidence 7777777665 347777888888777789999999999999999999887 999999999998764
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=212.61 Aligned_cols=204 Identities=29% Similarity=0.414 Sum_probs=183.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||||||.|+.-++.+..- .+.+.++++|+....++.+.+ +++.+|+++||++|.++.-. +.++++++-++|
T Consensus 297 ~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~l-krgveiiiatPgrlndL~~~-n~i~l~siTYlV 372 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDL-KRGVEIIIATPGRLNDLQMD-NVINLASITYLV 372 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHH-hcCceEEeeCCchHhhhhhc-CeeeeeeeEEEE
Confidence 68999999999999999998853 388999999999999999999 69999999999999999887 889999999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC-Cc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT-PL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 160 (230)
+||||+|++.||.+.+++|+=.+++.+|+++.|||||+.++.++..|+.+|..+.+..- +.. ..
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsL---------------dL~a~~ 437 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSL---------------DLVAVK 437 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEeccc---------------ceeeee
Confidence 99999999999999999999999999999999999999999999999999999888766 233 35
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.++|.++...+.+|...+..++... ...++||||.++..|+.|...|.-. |+.+.++||+-+|.
T Consensus 438 sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~----gi~~q~lHG~r~Q~ 502 (629)
T KOG0336|consen 438 SVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLK----GISSQSLHGNREQS 502 (629)
T ss_pred eeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhc----ccchhhccCChhhh
Confidence 5677777777888998888888766 5579999999999999999999877 99999999998875
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=235.87 Aligned_cols=207 Identities=33% Similarity=0.491 Sum_probs=188.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC--CcccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~--~~~~~~~l~ 78 (230)
+++|++||||||.||++++++|+... +++++.++|++...+++..+ +.++.|+|+||++..+++..+ +...+.++.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiael-kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAEL-KRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHH-hcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 58999999999999999999999987 99999999999999999999 466999999999999987651 223466677
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
++|+||||+|++.+|.+.+..|++++++.+|+++||||++..++.+++..+..|+.+.+... ...
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~---------------svV 582 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR---------------SVV 582 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc---------------eeE
Confidence 99999999999999999999999999999999999999999999999999999999888766 567
Q ss_pred CccceEEEEEcC-CCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 159 PLGLHLEYLECE-PDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 159 ~~~i~~~~~~~~-~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...+++.+..+. +.+|+..|++||... ...++||||.+++.|+.|...|.+. |+.+..+|||.+|.
T Consensus 583 ~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a----g~~~~slHGgv~q~ 650 (997)
T KOG0334|consen 583 CKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA----GYNCDSLHGGVDQH 650 (997)
T ss_pred eccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc----CcchhhhcCCCchH
Confidence 888988888888 889999999999744 4679999999999999999999988 99999999999984
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-32 Score=226.30 Aligned_cols=207 Identities=28% Similarity=0.505 Sum_probs=176.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc--ccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~--~~~~~l~ 78 (230)
++||++||||||-|+.+++..++... ++++..++||-....|.+-+ +..+||+|+||++|+.++..... -.+++++
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL-~~~p~IVVATPGRlweli~e~n~~l~~~k~vk 342 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLL-NQRPDIVVATPGRLWELIEEDNTHLGNFKKVK 342 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHH-hcCCCEEEecchHHHHHHHhhhhhhhhhhhce
Confidence 48999999999999999999999865 99999999999988887777 67899999999999999987333 2589999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCC-----CCCcEEEEeecCch---------------------HHHHHHHh--ccC
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTE---------------------AVEELSKA--GLR 130 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~-----~~~q~i~~SAt~~~---------------------~~~~~~~~--~~~ 130 (230)
++|+||||+|+..|+...+..|+..+. +.+|++.||||++- .++.++.. +..
T Consensus 343 cLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~ 422 (731)
T KOG0347|consen 343 CLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRG 422 (731)
T ss_pred EEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccC
Confidence 999999999999999999999998885 35799999999751 13333333 344
Q ss_pred CCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 131 NPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.|.+|...+. ..+.+.+....+.|+..+|.-.+.++|-..+ +++|||||+...+.+|+.+|...
T Consensus 423 kpkiiD~t~q---------------~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L 486 (731)
T KOG0347|consen 423 KPKIIDLTPQ---------------SATASTLTESLIECPPLEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNL 486 (731)
T ss_pred CCeeEecCcc---------------hhHHHHHHHHhhcCCccccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhc
Confidence 7788888777 5677888888999999999888888776555 68999999999999999999998
Q ss_pred hccCCceEEeccCCCCCCC
Q 026925 211 AVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 211 ~~~~g~~~~~lh~~~~~~e 229 (230)
+++...+|+.|.|++
T Consensus 487 ----~i~p~~LHA~M~QKq 501 (731)
T KOG0347|consen 487 ----DIPPLPLHASMIQKQ 501 (731)
T ss_pred ----CCCCchhhHHHHHHH
Confidence 999999999998864
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=213.14 Aligned_cols=205 Identities=34% Similarity=0.503 Sum_probs=191.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||+|||.|+.+..+.++... +++..+++|+.+.+++...+ .+++|||++||+++..+.-. -.+.++.+.++|
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l-~~npDii~ATpgr~~h~~ve-m~l~l~sveyVV 169 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILL-NENPDIIIATPGRLLHLGVE-MTLTLSSVEYVV 169 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHh-ccCCCEEEecCceeeeeehh-eeccccceeeee
Confidence 6899999999999999999999887 89999999999999998888 68899999999999887766 558899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||.++..||.+.+..+++.+|..+|+++||||+|..+-.+++..+.+|..+.+..+ ....+.
T Consensus 170 fdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldve---------------tkise~ 234 (529)
T KOG0337|consen 170 FDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE---------------TKISEL 234 (529)
T ss_pred ehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehh---------------hhcchh
Confidence 99999999999999999999999999999999999999999999999999999998777 678899
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
++..|+.+.+.+|..+|+.++... ..++++|||.|+.+|+.+...|... |+.+..+.|.|++.
T Consensus 235 lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~----g~~~s~iysslD~~ 298 (529)
T KOG0337|consen 235 LKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF----GGEGSDIYSSLDQE 298 (529)
T ss_pred hhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc----CCCccccccccChH
Confidence 999999999999999999999866 4578999999999999999999998 99999999999874
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=206.72 Aligned_cols=205 Identities=27% Similarity=0.361 Sum_probs=181.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++.|+||||||.|+..++.+.+++. ++.......+....+.. . -..+|++|||+.+.+++...+.++++.++.+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~-~---i~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGN-K---LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCC-c---chhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 57889999999999999999999887 78888777666332211 1 1257999999999999877677889999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||.|++ .||.++-.+|++.+|++.|.++||||+.+.+..++.+..+++..+.+..+ ....
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e---------------el~L 301 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE---------------ELAL 301 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh---------------hccc
Confidence 9999999996 57999999999999999999999999999999999999999999999888 6788
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+++++++.|.. .+|...+..+.....-.++||||.|+..|..++..+.+. |+.+.++||+|+-+|
T Consensus 302 ~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~----Gh~V~~l~G~l~~~~ 368 (477)
T KOG0332|consen 302 DNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE----GHQVSLLHGDLTVEQ 368 (477)
T ss_pred cchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc----CceeEEeeccchhHH
Confidence 999999998864 679999999998888889999999999999999999999 999999999998654
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-30 Score=197.10 Aligned_cols=184 Identities=26% Similarity=0.469 Sum_probs=171.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|+|.|||||-||.+.+.+|..++|++++....||.+...+.+.+. +-|+|+||||++++.+.++ +.+.+++++++|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk-~~PhivVgTPGrilALvr~-k~l~lk~vkhFv 190 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK-NCPHIVVGTPGRILALVRN-RSLNLKNVKHFV 190 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh-CCCeEEEcCcHHHHHHHHh-ccCchhhcceee
Confidence 68999999999999999999999999999999999999988888884 5899999999999999999 999999999999
Q ss_pred Eecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||+|.|+.+ ..+.+++.|.+.-|+..|+++||||++++++...++||.+|..|.+.++. -.+.-
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~--------------KLtLH 256 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEA--------------KLTLH 256 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchh--------------hhhhh
Confidence 9999999865 57889999999999999999999999999999999999999999998885 46778
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHH
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVD 201 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~ 201 (230)
.++|+|+.+++.+|...+.+||+.....+++||+.+.++..
T Consensus 257 GLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 257 GLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS 297 (387)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh
Confidence 89999999999999999999999999999999999988744
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=197.77 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=182.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCC----cEEEEcChHHHHHHhhCCcccCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGA----NLLIGTPGRLYDIMERMDVLDFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----~Iiv~TP~~l~~~l~~~~~~~~~~ 76 (230)
.||||+||++|+.|+++++..++... ++.|+.+.|..+.+.+...+.+..+ ||+|+||+||.+++.+.+.|.+++
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 48999999999999999999999987 8999999999999999999976666 999999999999999878999999
Q ss_pred ccEEEEeccccccccccHHHHHHHHHhCCC----------------------------------CCcEEEEeecCchHHH
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIISRLPK----------------------------------LRRTGLFSATQTEAVE 122 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~~l~~----------------------------------~~q~i~~SAt~~~~~~ 122 (230)
++++||||||+|++..|...+-.++..+.. ..+.+.+|||++....
T Consensus 296 LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~ 375 (620)
T KOG0350|consen 296 LRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPS 375 (620)
T ss_pred ceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChH
Confidence 999999999999998777766555433321 1246889999988888
Q ss_pred HHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHH
Q 026925 123 ELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDY 202 (230)
Q Consensus 123 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~ 202 (230)
.+...-++.|....+.... +.....|..+.|+.+.++...|...+..+++..+..++|+|+|++..+.+
T Consensus 376 Kl~~l~l~~Prl~~v~~~~-----------~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 376 KLKDLTLHIPRLFHVSKPL-----------IGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred HHhhhhcCCCceEEeeccc-----------ceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 8888888888766554210 11167889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCceEEeccCCCCCC
Q 026925 203 WGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 203 l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+++.|.-.+...+.++..++|++.++
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k 470 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGK 470 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHH
Confidence 99999855445677888888888764
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=204.37 Aligned_cols=198 Identities=18% Similarity=0.185 Sum_probs=154.1
Q ss_pred eEE-EeCChhhHHHHHHHHHHhhhhCC----------------------CceEEEEEcCcchHHHHHHHHhcCCcEEEEc
Q 026925 2 GMI-ISPTRELSSQIYHVAQPFISTLP----------------------DVKSVLLVGGVEVKADVKKIEEEGANLLIGT 58 (230)
Q Consensus 2 ~li-l~Pt~eLa~q~~~~~~~l~~~~~----------------------~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~T 58 (230)
+|| ++||||||.|+++.+++++..++ ++++..++||.+...+...+ ..+++|||||
T Consensus 64 rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l-~~~p~IIVgT 142 (844)
T TIGR02621 64 RLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD-PHRPAVIVGT 142 (844)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc-CCCCcEEEEC
Confidence 455 66999999999999999998653 38899999999988888888 6889999999
Q ss_pred ChHHHHHHhhCCcc----------------cCCcccEEEEeccccccccccHHHHHHHHHhC--CC---CCcEEEEeecC
Q 026925 59 PGRLYDIMERMDVL----------------DFRNLEILVLDEADRLLDMGFQKQISYIISRL--PK---LRRTGLFSATQ 117 (230)
Q Consensus 59 P~~l~~~l~~~~~~----------------~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l--~~---~~q~i~~SAt~ 117 (230)
+ +++.+ +.+ .+++++++|+|||| ++.+|.+.+..|++.+ +. ..|+++||||+
T Consensus 143 ~----D~i~s-r~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~ 215 (844)
T TIGR02621 143 V----DMIGS-RLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATS 215 (844)
T ss_pred H----HHHcC-CccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCC
Confidence 5 44444 443 26889999999999 6788999999999975 43 26999999999
Q ss_pred chHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHH---hCCCCeEEEEc
Q 026925 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI---KNKSKKIIIYF 194 (230)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~---~~~~~~~lIF~ 194 (230)
+..+..+...++.++..+.+... ......+.++ +..+...|...+...+. ...++++||||
T Consensus 216 p~ei~~l~~~~~~~p~~i~V~~~---------------~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~ 279 (844)
T TIGR02621 216 RTDGPDRTTLLSAEDYKHPVLKK---------------RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFC 279 (844)
T ss_pred CccHHHHHHHHccCCceeecccc---------------cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 99888888888877776555433 3344555664 44454555544443322 34567899999
Q ss_pred CchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 195 MTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 195 ~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
||+++|+.++..|.+. ++ ..+||+|++++
T Consensus 280 NTv~~Aq~L~~~L~~~----g~--~lLHG~m~q~d 308 (844)
T TIGR02621 280 RTVKHVRKVFAKLPKE----KF--ELLTGTLRGAE 308 (844)
T ss_pred CCHHHHHHHHHHHHhc----CC--eEeeCCCCHHH
Confidence 9999999999999887 66 89999998864
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=211.91 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=154.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc-----hHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE-----VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~-----~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~ 75 (230)
.++||+||++||.|+.+.++.++... ++.+..+.++.. ..+....+.++.++|+|+||+++.+.+. .+...
T Consensus 125 ~alIL~PTreLa~Qi~~~l~~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~ 200 (1176)
T PRK09401 125 KSYIIFPTRLLVEQVVEKLEKFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKK 200 (1176)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hcccc
Confidence 47999999999999999999999876 677777776543 2333445544679999999999998875 35567
Q ss_pred cccEEEEeccccccc-----------cccH-HHHHHHHHhCCC------------------------CCcEEEEeecCch
Q 026925 76 NLEILVLDEADRLLD-----------MGFQ-KQISYIISRLPK------------------------LRRTGLFSATQTE 119 (230)
Q Consensus 76 ~l~~lVvDEad~l~~-----------~~~~-~~~~~i~~~l~~------------------------~~q~i~~SAt~~~ 119 (230)
+++++|+||||+|++ .||. +++..+++.++. ..|+++||||.++
T Consensus 201 ~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 201 KFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred ccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 799999999999996 4674 678888877764 6899999999987
Q ss_pred H-HHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchh
Q 026925 120 A-VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCA 198 (230)
Q Consensus 120 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~ 198 (230)
. +.. ..+.++..+.+... .....++.+.++.++ +|...+..+++..+ .++||||++++
T Consensus 281 ~~~~~---~l~~~ll~~~v~~~---------------~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~ 339 (1176)
T PRK09401 281 RGNRV---KLFRELLGFEVGSP---------------VFYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDK 339 (1176)
T ss_pred cchHH---HHhhccceEEecCc---------------ccccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEeccc
Confidence 4 332 23445554555444 345678888888766 78888888887765 58999999988
Q ss_pred H---HHHHHHHhhhhhccCCceEEeccCCC
Q 026925 199 C---VDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 199 ~---~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
. |++++.+|... |+++..+||+|
T Consensus 340 ~~~~ae~l~~~L~~~----gi~v~~~hg~l 365 (1176)
T PRK09401 340 GKEYAEELAEYLEDL----GINAELAISGF 365 (1176)
T ss_pred ChHHHHHHHHHHHHC----CCcEEEEeCcH
Confidence 7 99999999998 99999999998
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=196.38 Aligned_cols=204 Identities=16% Similarity=0.202 Sum_probs=141.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC---cccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD---VLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~---~~~~~~l 77 (230)
.+|||+||||||+|+.+.++++. . .++++..+.|+.+.. +...+ ..+++|+|+||+++...+.... ...++++
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~-~-~~i~v~~~~Gdt~~~-~r~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l 158 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELT-L-RGVRPATYDGDTPTE-ERRWA-REHARYVLTNPDMLHRGILPSHARWARFLRRL 158 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhc-c-CCeEEEEEeCCCCHH-HHHHH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcC
Confidence 37999999999999999999997 2 378888888887644 33444 5679999999999875332101 1237899
Q ss_pred cEEEEeccccccccccHHHHHHHHHh-------CCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccch
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISR-------LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~-------l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (230)
+++|+||||.+.+ .|+..+..++++ .+.+.|++++|||+++..+ ++..++..|..+ +...
T Consensus 159 ~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~---------- 225 (742)
T TIGR03817 159 RYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTED---------- 225 (742)
T ss_pred CEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCC----------
Confidence 9999999999865 366655444433 4567899999999998754 677778777544 2222
Q ss_pred hccccCCCCcc-ceEEEEEcC----------------CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhcc
Q 026925 151 QQLASSKTPLG-LHLEYLECE----------------PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVL 213 (230)
Q Consensus 151 ~~~~~~~~~~~-i~~~~~~~~----------------~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~ 213 (230)
..+.. ....+.... ..++...+..+++. +.++||||||++.|+.++..|.+.+..
T Consensus 226 ------~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~ 297 (742)
T TIGR03817 226 ------GSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGE 297 (742)
T ss_pred ------CCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 11111 122111111 01344556666653 569999999999999999998875211
Q ss_pred ----CCceEEeccCCCCCCC
Q 026925 214 ----KSLSLIPLHGKMKQVG 229 (230)
Q Consensus 214 ----~g~~~~~lh~~~~~~e 229 (230)
.+.++..+||+++++|
T Consensus 298 ~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 298 VDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred hccccccchhheecCCCHHH
Confidence 1567889999999864
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=201.71 Aligned_cols=190 Identities=16% Similarity=0.153 Sum_probs=130.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhh-----------hCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIS-----------TLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~-----------~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~ 69 (230)
.+|||+|+|+|++|+++.++.... ..+++++...+|+.+..++.+.+ ++++||||+||+++..++.+.
T Consensus 39 raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll-~~ppdILVTTPEsL~~LLtsk 117 (1490)
T PRK09751 39 RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT-RNPPDILITTPESLYLMLTSR 117 (1490)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh-cCCCCEEEecHHHHHHHHhhh
Confidence 379999999999999999875221 12378999999999887766555 578999999999999988752
Q ss_pred CcccCCcccEEEEeccccccccc----cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcc
Q 026925 70 DVLDFRNLEILVLDEADRLLDMG----FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKS 143 (230)
Q Consensus 70 ~~~~~~~l~~lVvDEad~l~~~~----~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~ 143 (230)
....+++++++||||+|.+.+.. +...++++...++.+.|+|++|||+++ .+.+.+ |+. .+..+...+.
T Consensus 118 ~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~-~L~g~~pv~Iv~~~~--- 192 (1490)
T PRK09751 118 ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRS-ASDVAA-FLGGDRPVTVVNPPA--- 192 (1490)
T ss_pred hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHH-HhcCCCCEEEECCCC---
Confidence 33468999999999999998653 345667777777788999999999987 456654 443 3444432111
Q ss_pred cccccchhccccCCCCccceEEEEEcCCC--------------------CcHH-HHHHHHHh-CCCCeEEEEcCchhHHH
Q 026925 144 HHVSASSQQLASSKTPLGLHLEYLECEPD--------------------EKPS-QLVDLLIK-NKSKKIIIYFMTCACVD 201 (230)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------~k~~-~l~~ll~~-~~~~~~lIF~~t~~~~~ 201 (230)
..+..+. .++...+. .... ....++.. ...+++||||||++.|+
T Consensus 193 -------------~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE 258 (1490)
T PRK09751 193 -------------MRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAE 258 (1490)
T ss_pred -------------CcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHH
Confidence 1111122 11111110 0001 11123321 24578999999999999
Q ss_pred HHHHHhhhh
Q 026925 202 YWGVVLPRL 210 (230)
Q Consensus 202 ~l~~~L~~~ 210 (230)
.++..|++.
T Consensus 259 ~La~~L~~~ 267 (1490)
T PRK09751 259 KLTARLNEL 267 (1490)
T ss_pred HHHHHHHHh
Confidence 999999875
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=196.34 Aligned_cols=197 Identities=21% Similarity=0.237 Sum_probs=145.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEE---EEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSV---LLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~---~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
.++||+||++||.|+++.+++++... ++++. .++|+.+..++. ..+.+++++|+||||+++.+.+.. +..
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~ 198 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE---LGP 198 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH---hcC
Confidence 47999999999999999999998765 55433 467877665443 344445699999999999888765 222
Q ss_pred CcccEEEEeccccccc-----------cccHHH-HHHHH----------------------HhCCCCCc--EEEEeec-C
Q 026925 75 RNLEILVLDEADRLLD-----------MGFQKQ-ISYII----------------------SRLPKLRR--TGLFSAT-Q 117 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~-----------~~~~~~-~~~i~----------------------~~l~~~~q--~i~~SAt-~ 117 (230)
+++++|+||||+|++ .||.++ +..++ +.++...| +++|||| .
T Consensus 199 -~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~ 277 (1171)
T TIGR01054 199 -KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGR 277 (1171)
T ss_pred -CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCC
Confidence 899999999999998 467653 45543 33455555 5779999 5
Q ss_pred chHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCch
Q 026925 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTC 197 (230)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~ 197 (230)
|..+.. .++.++..+.+... .....++.+.+...+. +...+.++++..+ .++||||+|+
T Consensus 278 p~~~~~---~l~r~ll~~~v~~~---------------~~~~r~I~~~~~~~~~--~~~~L~~ll~~l~-~~~IVFv~t~ 336 (1171)
T TIGR01054 278 PRGKRA---KLFRELLGFEVGGG---------------SDTLRNVVDVYVEDED--LKETLLEIVKKLG-TGGIVYVSID 336 (1171)
T ss_pred ccccHH---HHcccccceEecCc---------------cccccceEEEEEeccc--HHHHHHHHHHHcC-CCEEEEEecc
Confidence 654332 34556555665544 4566788887775443 3566778887664 6899999999
Q ss_pred ---hHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 198 ---ACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 198 ---~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+.|++++..|.+. |+++..+||++++
T Consensus 337 ~~~~~a~~l~~~L~~~----g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 337 YGKEKAEEIAEFLENH----GVKAVAYHATKPK 365 (1171)
T ss_pred ccHHHHHHHHHHHHhC----CceEEEEeCCCCH
Confidence 9999999999988 9999999999964
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=181.40 Aligned_cols=200 Identities=17% Similarity=0.178 Sum_probs=141.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVL-DFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~ 76 (230)
.+|||+||++|+.|....+..+ ++.+..+.++....+.. ..+..+.++|+++||+++....+....+ ...+
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~ 127 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKG 127 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCC
Confidence 3799999999999988777654 67777787776654332 2334567899999999975422110122 5688
Q ss_pred ccEEEEeccccccccc--cHHHHHHH---HHhCCCCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcccccccc
Q 026925 77 LEILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKSHHVSAS 149 (230)
Q Consensus 77 l~~lVvDEad~l~~~~--~~~~~~~i---~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~ 149 (230)
++++||||||++.+|| |++.+..+ ...+ +..+++++|||.++.+.......+. +|..+....
T Consensus 128 i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---------- 196 (470)
T TIGR00614 128 ITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---------- 196 (470)
T ss_pred cCEEEEeCCcccCccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC----------
Confidence 9999999999999987 67776654 3344 4678999999999988776666543 444432211
Q ss_pred hhccccCCCCccceEEEEEcCCCCcHHHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 150 SQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...++...+.. ...+....+..++. ...++++||||+|+++|+.++..|.+. |+++..+||+|+++
T Consensus 197 --------~r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~ 263 (470)
T TIGR00614 197 --------DRPNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEIS 263 (470)
T ss_pred --------CCCCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHH
Confidence 12333322222 22245566677776 456667799999999999999999988 99999999999976
Q ss_pred C
Q 026925 229 G 229 (230)
Q Consensus 229 e 229 (230)
|
T Consensus 264 e 264 (470)
T TIGR00614 264 A 264 (470)
T ss_pred H
Confidence 4
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=192.47 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=146.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++||+||++||.|+++.+++....+ ++++..+.++.+..++...+ ..+++||+||||+.+ . ..+.++++
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L 723 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDL 723 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhC
Confidence 58999999999999999999877666 68888888887766655443 236799999999632 2 44678899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++||||+|++ ++. ....++.++.+.|+++||||..+....+...++.++..+...+.
T Consensus 724 ~lLVIDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~----------------- 781 (1147)
T PRK10689 724 GLLIVDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----------------- 781 (1147)
T ss_pred CEEEEechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC-----------------
Confidence 99999999997 332 24456778889999999999988888888888889888765443
Q ss_pred CCccceEEEEEcCCC-CcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPD-EKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
....+++++...... .+...+.++. .+++++||||+++.++.++..|.+. .++.++.++||+|+++|
T Consensus 782 ~r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~--~p~~~v~~lHG~m~q~e 849 (1147)
T PRK10689 782 RRLAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHGQMRERE 849 (1147)
T ss_pred CCCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHh--CCCCcEEEEeCCCCHHH
Confidence 122345544443221 1222233332 3568999999999999999999987 46789999999999864
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=197.23 Aligned_cols=199 Identities=21% Similarity=0.170 Sum_probs=150.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC-CceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~ 76 (230)
++|||+||++|+.|+.+.++.++.... ++++..++|+.+..++.. .+.++.++|+|+||+++.+.+.. . ...+
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~-l--~~~~ 200 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE-M--KHLK 200 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH-H--hhCC
Confidence 479999999999999999999987652 567788889887765533 34445699999999999887764 2 2278
Q ss_pred ccEEEEecccccccc-----------ccHHHHHH----HHH----------------------hCCCCCc-EEEEeecCc
Q 026925 77 LEILVLDEADRLLDM-----------GFQKQISY----IIS----------------------RLPKLRR-TGLFSATQT 118 (230)
Q Consensus 77 l~~lVvDEad~l~~~-----------~~~~~~~~----i~~----------------------~l~~~~q-~i~~SAt~~ 118 (230)
++++||||||+|++| ||.+++.. |++ .++...| .+++|||.+
T Consensus 201 i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~ 280 (1638)
T PRK14701 201 FDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGK 280 (1638)
T ss_pred CCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCC
Confidence 999999999999873 77777754 332 2345556 677999998
Q ss_pred hHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchh
Q 026925 119 EAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCA 198 (230)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~ 198 (230)
+. .....++.++..+.+... .....++.+.++..+..+| ..+.++++.. +..+||||+|++
T Consensus 281 ~r--~~~~~l~~~~l~f~v~~~---------------~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~ 341 (1638)
T PRK14701 281 AK--GDRVKLYRELLGFEVGSG---------------RSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDE 341 (1638)
T ss_pred ch--hHHHHHhhcCeEEEecCC---------------CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccc
Confidence 63 222234567776666555 4466788888887765555 5788888876 468999999987
Q ss_pred H---HHHHHHHhhhhhccCCceEEeccCCC
Q 026925 199 C---VDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 199 ~---~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
. |++++..|.+. |+++..+||+.
T Consensus 342 ~~e~ae~la~~L~~~----Gi~a~~~h~~R 367 (1638)
T PRK14701 342 GAEKAEEIEKYLLED----GFKIELVSAKN 367 (1638)
T ss_pred cchHHHHHHHHHHHC----CCeEEEecchH
Confidence 5 58999999998 99999999973
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=186.97 Aligned_cols=196 Identities=18% Similarity=0.257 Sum_probs=143.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|++..++++...+ ++++..+.|+.+..+. ...+..+++||+||||. ++. +.+.++++
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~--~~v~f~~L 574 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQ--KDVKFKDL 574 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hhh--CCCCcccC
Confidence 58999999999999999999988877 6898888887664433 33444467999999994 232 55778999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++||||+|++ .......++.++...|+++||||..+....+....+.++..+...+. .
T Consensus 575 ~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~---------------~- 633 (926)
T TIGR00580 575 GLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE---------------D- 633 (926)
T ss_pred CEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC---------------C-
Confidence 99999999985 33345566777888999999999887777776667777777665433 1
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.+++.......-...+...+ ..+++++||||+.++++.++..|.+. .+++++..+||+|+++|
T Consensus 634 -R~~V~t~v~~~~~~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~--~p~~~v~~lHG~m~~~e 700 (926)
T TIGR00580 634 -RLPVRTFVMEYDPELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLREL--VPEARIAIAHGQMTENE 700 (926)
T ss_pred -ccceEEEEEecCHHHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHh--CCCCeEEEecCCCCHHH
Confidence 123444444322211112222222 24578999999999999999999986 45889999999999764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=187.62 Aligned_cols=198 Identities=16% Similarity=0.206 Sum_probs=141.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+|+|+++||.|+++.+..+. .+ ++++..++|+.+...+ . .++++|+|+||+++..++++ +...+++++++|
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~-~~-g~~v~~~~Gd~~~~~~---~-~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvV 143 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWE-KL-GLRVAMTTGDYDSTDE---W-LGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVV 143 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHh-hc-CCEEEEEeCCCCCchh---h-hccCCEEEEcHHHHHHHHhC-CchhhhcCCEEE
Confidence 7999999999999999999874 34 7899999998765332 2 25789999999999999887 666789999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||+|.+.+.+++..++.++..++...|++++|||+++ ...+.. |+...... .. ..|..
T Consensus 144 iDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~---~~----------------~rpv~ 202 (720)
T PRK00254 144 ADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVV---SD----------------WRPVK 202 (720)
T ss_pred EcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCcccc---CC----------------CCCCc
Confidence 99999998888999999999999989999999999986 355554 55432211 01 01111
Q ss_pred c-----eEEEEEcCCC--Cc-----HHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhc----c------------
Q 026925 162 L-----HLEYLECEPD--EK-----PSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAV----L------------ 213 (230)
Q Consensus 162 i-----~~~~~~~~~~--~k-----~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~----~------------ 213 (230)
+ .+.+...... .+ ...+.+++. .++++||||+|++.|+.++..|..... .
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (720)
T PRK00254 203 LRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADS 280 (720)
T ss_pred ceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 1 1111111111 11 123334443 457999999999999998877754210 0
Q ss_pred -------------CCceEEeccCCCCCCC
Q 026925 214 -------------KSLSLIPLHGKMKQVG 229 (230)
Q Consensus 214 -------------~g~~~~~lh~~~~~~e 229 (230)
-+..++++||+|++++
T Consensus 281 ~~~~~~~~~L~~~l~~gv~~hHagl~~~e 309 (720)
T PRK00254 281 LEENPTNEKLKKALRGGVAFHHAGLGRTE 309 (720)
T ss_pred HhcCCCcHHHHHHHhhCEEEeCCCCCHHH
Confidence 0235899999999764
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=186.46 Aligned_cols=202 Identities=18% Similarity=0.178 Sum_probs=141.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-----cCCcEEEEcChHHHH---HHhhCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-----EGANLLIGTPGRLYD---IMERMDVL 72 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~-----~~~~Iiv~TP~~l~~---~l~~~~~~ 72 (230)
++|||+|+++|+.+....+.. . ++++..+.++....++...+.. ++++||++||+++.. ++.....+
T Consensus 502 iTLVISPLiSLmqDQV~~L~~---~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQ---A--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHh---C--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 479999999999753333332 2 7889999998887766555432 578999999999853 22210111
Q ss_pred -cCCcccEEEEeccccccccc--cHHHHHHH--HHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccc
Q 026925 73 -DFRNLEILVLDEADRLLDMG--FQKQISYI--ISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVS 147 (230)
Q Consensus 73 -~~~~l~~lVvDEad~l~~~~--~~~~~~~i--~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 147 (230)
....+.++||||||++++|| |++.+..+ +.......+++++|||.++.+.......+.....+.+...
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S------- 649 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS------- 649 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc-------
Confidence 23558899999999999998 88887764 3344457889999999999988866665543322222222
Q ss_pred cchhccccCCCCccceEEEEEcCCCC-cHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 148 ASSQQLASSKTPLGLHLEYLECEPDE-KPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....++...+ .+... ....+..++... ...+.||||+|++.|+.++..|... |+++..+||+|
T Consensus 650 ---------f~RpNL~y~V--v~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~----Gika~~YHAGL 714 (1195)
T PLN03137 650 ---------FNRPNLWYSV--VPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF----GHKAAFYHGSM 714 (1195)
T ss_pred ---------cCccceEEEE--eccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC----CCCeeeeeCCC
Confidence 1223443322 23332 245666666543 3568999999999999999999988 99999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
++++
T Consensus 715 s~ee 718 (1195)
T PLN03137 715 DPAQ 718 (1195)
T ss_pred CHHH
Confidence 8754
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-23 Score=188.03 Aligned_cols=217 Identities=16% Similarity=0.165 Sum_probs=136.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHh-------h----hhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC
Q 026925 1 MGMIISPTRELSSQIYHVAQPF-------I----STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l-------~----~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~ 69 (230)
++|||+|||+||+|+++.+... + ..++++++...+|+.+..+....+ ..+++|+|+||+++..++..
T Consensus 86 ~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l-~~~p~IlVtTPE~L~~ll~~- 163 (876)
T PRK13767 86 YCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML-KKPPHILITTPESLAILLNS- 163 (876)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH-hCCCCEEEecHHHHHHHhcC-
Confidence 3799999999999998866532 2 233467889999998876665555 67899999999999888865
Q ss_pred Ccc--cCCcccEEEEeccccccccccHHHH----HHHHHhCCCCCcEEEEeecCchHHHHHHHhccCC-----CeEEEEe
Q 026925 70 DVL--DFRNLEILVLDEADRLLDMGFQKQI----SYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN-----PVRVEVR 138 (230)
Q Consensus 70 ~~~--~~~~l~~lVvDEad~l~~~~~~~~~----~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~-----~~~i~~~ 138 (230)
+.+ .+++++++|+||+|.+.+..++..+ .++....+...|++++|||+++ ...+....... +..+.+.
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv 242 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIV 242 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEE
Confidence 444 4789999999999999876655544 4444444467899999999986 24444332211 2111111
Q ss_pred ccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhcc--C
Q 026925 139 AESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVL--K 214 (230)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~--~ 214 (230)
.....+...... ..+ ... ............+...+.. ...+++||||||++.|+.++..|.+.... .
T Consensus 243 ~~~~~k~~~i~v------~~p--~~~-l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~ 313 (876)
T PRK13767 243 DARFVKPFDIKV------ISP--VDD-LIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYD 313 (876)
T ss_pred ccCCCccceEEE------ecc--Ccc-ccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhcc
Confidence 110000000000 000 000 0111112222222233321 23568999999999999999999875211 2
Q ss_pred CceEEeccCCCCCCC
Q 026925 215 SLSLIPLHGKMKQVG 229 (230)
Q Consensus 215 g~~~~~lh~~~~~~e 229 (230)
+..+.++||+|++++
T Consensus 314 ~~~i~~hHg~ls~~~ 328 (876)
T PRK13767 314 EDNIGAHHSSLSREV 328 (876)
T ss_pred ccceeeeeCCCCHHH
Confidence 478999999999764
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=178.89 Aligned_cols=197 Identities=19% Similarity=0.201 Sum_probs=147.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++||+|+++|+.|..+.++.+ ++.+..+.++.+..+... .+..++.+|+++||+++...... ..+...+++
T Consensus 56 ~lVisPl~sL~~dq~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~ 129 (591)
T TIGR01389 56 TVVISPLISLMKDQVDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIA 129 (591)
T ss_pred EEEEcCCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCC
Confidence 689999999999988877764 678888888776554333 34457899999999998653322 334567899
Q ss_pred EEEEeccccccccc--cHHHHHHHH---HhCCCCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcccccccchh
Q 026925 79 ILVLDEADRLLDMG--FQKQISYII---SRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 79 ~lVvDEad~l~~~~--~~~~~~~i~---~~l~~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 151 (230)
++||||||++.+|| |++.+..+. ..++ ..+++++|||.++.+......++. ++..+. ..
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~----------- 195 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI--TS----------- 195 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cC-----------
Confidence 99999999999887 777776654 3444 445999999999998877777665 333222 11
Q ss_pred ccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
....++. +......++...+..++....+.++||||+|++.|+.++..|... |+++..+||+|++++
T Consensus 196 -----~~r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~----g~~~~~~H~~l~~~~ 262 (591)
T TIGR01389 196 -----FDRPNLR--FSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ----GISALAYHAGLSNKV 262 (591)
T ss_pred -----CCCCCcE--EEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----CCCEEEEECCCCHHH
Confidence 1223333 223345567788888888777889999999999999999999988 999999999998753
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=184.54 Aligned_cols=185 Identities=14% Similarity=0.197 Sum_probs=125.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++||.|+++.++++.. + ++++..++|+.....+ . .+.++|+|+||+++..++++ +...+++++++|
T Consensus 70 al~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~--l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvV 142 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--W--LGDNDIIVATSEKVDSLLRN-GAPWLDDITCVV 142 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--c--cCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEE
Confidence 79999999999999999998753 3 7899999998764332 2 25689999999999999987 556689999999
Q ss_pred EeccccccccccHHHHHHHHHhC---CCCCcEEEEeecCchHHHHHHHhccCC--------CeEEEEeccCcccccccch
Q 026925 82 LDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAGLRN--------PVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l---~~~~q~i~~SAt~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~ 150 (230)
+||+|.+.+.+++..++.++.++ +...|++++|||+++. ..+.. |+.. |+.+...... ...
T Consensus 143 iDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~------~~~ 214 (737)
T PRK02362 143 VDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFY------GGA 214 (737)
T ss_pred EECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEec------CCe
Confidence 99999998888888888776554 4678999999999863 44443 3321 1111100000 000
Q ss_pred hccccCCCCccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 151 QQLASSKTPLGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..... .+..+.... ......+.+.++ .++++||||+|++.|+.++..|...
T Consensus 215 -----~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~ 266 (737)
T PRK02362 215 -----IHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASA 266 (737)
T ss_pred -----ecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHH
Confidence 00000 111111111 122333444443 5579999999999999999998765
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=177.07 Aligned_cols=198 Identities=18% Similarity=0.147 Sum_probs=142.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||++|+++|+.|+.+.+..+ ++.+..+.++....+... .+..+..+++++||+++....-. ..+...++
T Consensus 67 ~tlVisPl~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l 140 (607)
T PRK11057 67 LTLVVSPLISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNP 140 (607)
T ss_pred CEEEEecHHHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCC
Confidence 3789999999999988887764 567777777766554433 33346789999999998632111 22445678
Q ss_pred cEEEEeccccccccc--cHHHHHHH---HHhCCCCCcEEEEeecCchHHHHHHHhcc--CCCeEEEEeccCcccccccch
Q 026925 78 EILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGL--RNPVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 78 ~~lVvDEad~l~~~~--~~~~~~~i---~~~l~~~~q~i~~SAt~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~ 150 (230)
+++||||||++.+|| |.+.+..+ ...+ +..+++++|||.++.+.......+ .+|..... .
T Consensus 141 ~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~---------- 207 (607)
T PRK11057 141 ALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--S---------- 207 (607)
T ss_pred CEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--C----------
Confidence 999999999999987 66665544 3344 478899999999988766444443 34443221 1
Q ss_pred hccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 151 QQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
....++. +.......+...+...+....++++||||+|+++|+.++..|.+. |+++..+||+|++++
T Consensus 208 ------~~r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~ 274 (607)
T PRK11057 208 ------FDRPNIR--YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDV 274 (607)
T ss_pred ------CCCCcce--eeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHH
Confidence 1122332 233344556677788888778889999999999999999999988 999999999998753
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-23 Score=168.65 Aligned_cols=211 Identities=27% Similarity=0.431 Sum_probs=173.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhC--CCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTL--PDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
.+||+-|+||||+|+++.+++|.-.. |.++-.++.||.-...|-+.+ ..+.||+||||+++.+++.. +.+.+..++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql-~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQL-KDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHh-hcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 37999999999999999998886544 556777888888888888888 58899999999999999998 889999999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCC------CCcEEEEeecCc-hHHHHHHHhccCCCeEEEEeccCcccccccchh
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPK------LRRTGLFSATQT-EAVEELSKAGLRNPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~------~~q~i~~SAt~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (230)
++|+||+|.++..+|-+.+.++...+|+ ..|.+.+|||+. -++..+.++.|+-|..+....+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge----------- 434 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE----------- 434 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccc-----------
Confidence 9999999999999999999999888873 568999999985 3577788888899998888777
Q ss_pred ccccCCCCccceEEEEEcCCC------------------------------CcH---------HHHHHHHHhCCCCeEEE
Q 026925 152 QLASSKTPLGLHLEYLECEPD------------------------------EKP---------SQLVDLLIKNKSKKIII 192 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~------------------------------~k~---------~~l~~ll~~~~~~~~lI 192 (230)
+..|+.++|.+..+.+. +.. +.-...++++...++||
T Consensus 435 ----D~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaii 510 (725)
T KOG0349|consen 435 ----DLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAII 510 (725)
T ss_pred ----cccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEE
Confidence 67777777766655421 111 22233445678889999
Q ss_pred EcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 193 YFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 193 F~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
||.|+.+|+.|.+++.+.. ...+.+.|+||+..+.|
T Consensus 511 fcrtk~dcDnLer~~~qkg-g~~~scvclhgDrkP~E 546 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKG-GKHYSCVCLHGDRKPDE 546 (725)
T ss_pred EEeccccchHHHHHHHHcC-CccceeEEEecCCChhH
Confidence 9999999999999999874 45689999999996544
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-23 Score=173.74 Aligned_cols=209 Identities=24% Similarity=0.286 Sum_probs=172.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhh--hhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc--ccCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFI--STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~--~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~--~~~~~ 76 (230)
+++|+.|||+||.|++.+++++. ... +.++...............+....+|++++||.++..++.. +. ++++.
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~-~~~~idl~~ 288 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL-GKLNIDLSK 288 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC-CCccchhhe
Confidence 47999999999999999999997 444 45555554443333333444456789999999999999987 44 78999
Q ss_pred ccEEEEecccccccc-ccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccc
Q 026925 77 LEILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLA 154 (230)
Q Consensus 77 l~~lVvDEad~l~~~-~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (230)
+..+|+||||++++. .|...+-.|.+.+. +...+-+||||++.++++++...+.++..+.++..
T Consensus 289 V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~-------------- 354 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR-------------- 354 (593)
T ss_pred eeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc--------------
Confidence 999999999999998 89999999988875 46788999999999999999999999998887766
Q ss_pred cCCCCccceEEEEEc-CCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 155 SSKTPLGLHLEYLEC-EPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 155 ~~~~~~~i~~~~~~~-~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
......+.|....+ .+..|...+..++...-..|++||+.+.++|..|...|.. ..++++.++||+.++.|
T Consensus 355 -~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 355 -NSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQ 426 (593)
T ss_pred -hhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhH
Confidence 44456665555555 5677999999999988888999999999999999999941 34999999999988765
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-22 Score=165.96 Aligned_cols=199 Identities=19% Similarity=0.195 Sum_probs=150.3
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
|+|+|.-+||+|-+..++.--+.+ ++++..-.|.+-...... .-....+||||||.+-+..+++. + -++.++.+
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g-~~lgdiGt 341 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-G-KDLGDIGT 341 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-C-Ccccccce
Confidence 789999999999999999877776 777765555332222111 00124589999999999988886 4 78999999
Q ss_pred EEEeccccccccccHHHHHHH---HHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccC
Q 026925 80 LVLDEADRLLDMGFQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS 156 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i---~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 156 (230)
+||||+|.+-+...++.+.-+ ++++.+..|++.+|||..+. .++++.+--.++...
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-------------------- 400 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-------------------- 400 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec--------------------
Confidence 999999988775544444333 34455689999999999865 777777644544432
Q ss_pred CCCccc-eEEEEEcCCCCcHHHHHHHHHhC--------CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 157 KTPLGL-HLEYLECEPDEKPSQLVDLLIKN--------KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 157 ~~~~~i-~~~~~~~~~~~k~~~l~~ll~~~--------~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
..|-.+ .|.++.-++.+|++.+..+.+.. -..+||||++|++.|.+++.+|... |+++.++|+||++
T Consensus 401 ~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k----G~~a~pYHaGL~y 476 (830)
T COG1202 401 ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK----GLKAAPYHAGLPY 476 (830)
T ss_pred CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC----CcccccccCCCcH
Confidence 234444 56666666899999999998632 3358999999999999999999988 9999999999997
Q ss_pred CC
Q 026925 228 VG 229 (230)
Q Consensus 228 ~e 229 (230)
.|
T Consensus 477 ~e 478 (830)
T COG1202 477 KE 478 (830)
T ss_pred HH
Confidence 65
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=169.55 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=138.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhh--CCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIST--LPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~--~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+++|++||+|||.|+...+.+..+. +++..+....||.+. ...... .++.+|+|+|+.. ....+++++
T Consensus 224 ~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~-~k~~~Ilv~T~~L--------~l~~L~~v~ 293 (675)
T PHA02653 224 PIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTN-PKPYGLVFSTHKL--------TLNKLFDYG 293 (675)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcc-cCCCCEEEEeCcc--------cccccccCC
Confidence 3789999999999999998876643 335677788888763 222222 2478999999852 112478899
Q ss_pred EEEEeccccccccccHHHHHHHHHhC-CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
++|+||||.+...+ +.+..+++.. +..+|+++||||+++++..+ ..++++|..+.+...
T Consensus 294 ~VVIDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----------------- 353 (675)
T PHA02653 294 TVIIDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----------------- 353 (675)
T ss_pred EEEccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC-----------------
Confidence 99999999987664 4445555444 34469999999999888877 578889888776422
Q ss_pred CCccceEEEEEcCC----------CCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 158 TPLGLHLEYLECEP----------DEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 158 ~~~~i~~~~~~~~~----------~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
+...+++++..... .++...+..+... ..++++||||+++++|+.++..|.+. ..|+++.++||+|
T Consensus 354 t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~--~~~~~v~~LHG~L 431 (675)
T PHA02653 354 TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKR--LPIYDFYIIHGKV 431 (675)
T ss_pred cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhh--cCCceEEeccCCc
Confidence 23455665554321 1122222222221 23468999999999999999999876 2368999999999
Q ss_pred CCC
Q 026925 226 KQV 228 (230)
Q Consensus 226 ~~~ 228 (230)
+++
T Consensus 432 sq~ 434 (675)
T PHA02653 432 PNI 434 (675)
T ss_pred CHH
Confidence 974
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=169.68 Aligned_cols=195 Identities=17% Similarity=0.240 Sum_probs=131.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|+++.+++++..+ ++++..++|+.+..+. ...+.++.++|+||||+.+. ..+.++++
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~------~~v~~~~l 384 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ------DDVEFHNL 384 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc------ccchhccc
Confidence 48999999999999999999999877 7999999999875433 33454567999999998753 34567899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++|+||+|++- ......+...+...+++++|||..+....+......++..+...+.
T Consensus 385 ~lvVIDE~Hrfg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~----------------- 442 (681)
T PRK10917 385 GLVIIDEQHRFG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP----------------- 442 (681)
T ss_pred ceEEEechhhhh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC-----------------
Confidence 999999999862 2223334444567899999999876554444322223223221111
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCch--------hHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTC--------ACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~--------~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
....+...+... ++...+...+.. ..+++++|||++. ..++.++..|.+. ..++++..+||+|++
T Consensus 443 ~r~~i~~~~~~~---~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~--~~~~~v~~lHG~m~~ 517 (681)
T PRK10917 443 GRKPITTVVIPD---SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA--FPELRVGLLHGRMKP 517 (681)
T ss_pred CCCCcEEEEeCc---ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHH--CCCCcEEEEeCCCCH
Confidence 122344443332 222333333332 3567999999954 4567788888876 345899999999987
Q ss_pred CC
Q 026925 228 VG 229 (230)
Q Consensus 228 ~e 229 (230)
+|
T Consensus 518 ~e 519 (681)
T PRK10917 518 AE 519 (681)
T ss_pred HH
Confidence 64
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=173.06 Aligned_cols=200 Identities=17% Similarity=0.208 Sum_probs=135.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+++|+++||.|+++.+.++.. . +.++...+|+...... . .+.+||+|+||+++..++.+ ....+++++++|
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~--~--~~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lvV 140 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD--F--IKRYDVVILTSEKADSLIHH-DPYIINDVGLIV 140 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh--h--hccCCEEEECHHHHHHHHhC-ChhHHhhcCEEE
Confidence 78999999999999999998753 3 7888888887654322 1 25689999999999998877 556689999999
Q ss_pred EeccccccccccHHHHHHHHHh---CCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISR---LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~---l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
+||+|.+.+.+++..++.++.. ++...|++++|||+++ ...+.+ |+..+.. . .. ..
T Consensus 141 iDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~-~--~~----------------~r 199 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLI-K--SN----------------FR 199 (674)
T ss_pred EecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCcc-C--CC----------------CC
Confidence 9999999887777777776544 4567899999999986 355554 4432211 0 00 01
Q ss_pred CccceEEE-----EEcCCCCc-HHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccC----------------
Q 026925 159 PLGLHLEY-----LECEPDEK-PSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLK---------------- 214 (230)
Q Consensus 159 ~~~i~~~~-----~~~~~~~k-~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~---------------- 214 (230)
+..+.... ...+...+ ...+..++.. ..++++||||++++.|+.++..|.+.....
T Consensus 200 ~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 279 (674)
T PRK01172 200 PVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDS 279 (674)
T ss_pred CCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHH
Confidence 11111000 00111111 1113333332 356799999999999999999987652100
Q ss_pred -----CceEEeccCCCCCCC
Q 026925 215 -----SLSLIPLHGKMKQVG 229 (230)
Q Consensus 215 -----g~~~~~lh~~~~~~e 229 (230)
...++++||+|+++|
T Consensus 280 L~~~l~~gv~~~hagl~~~e 299 (674)
T PRK01172 280 LNEMLPHGVAFHHAGLSNEQ 299 (674)
T ss_pred HHHHHhcCEEEecCCCCHHH
Confidence 124788999999864
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=171.46 Aligned_cols=201 Identities=16% Similarity=0.187 Sum_probs=149.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCccc--CCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLE 78 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~--~~~l~ 78 (230)
.+|+|+|-|+|.+.+...++..+..+ |+.+...+|+.+..+..... .++|||+++|||+|..++.. +.+. +++++
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~-~~PPdILiTTPEsL~lll~~-~~~r~~l~~vr 151 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKML-KNPPHILITTPESLAILLNS-PKFRELLRDVR 151 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHc-CCccceecCCCChHHhhhcc-CCCCcEEEeChhHHHHHhcC-HHHHHHhcCCc
Confidence 37999999999999999999999988 99998888888876666555 78999999999999888876 4443 89999
Q ss_pred EEEEeccccccccccHH----HHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCC--CeEEEEeccCcccccccchhc
Q 026925 79 ILVLDEADRLLDMGFQK----QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN--PVRVEVRAESKSHHVSASSQQ 152 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~----~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~ 152 (230)
++||||+|.+.....+. .++++...-+ ..|.|++|||..+ ....++...+. +..|.-...
T Consensus 152 ~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~------------ 217 (814)
T COG1201 152 YVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA------------ 217 (814)
T ss_pred EEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc------------
Confidence 99999999998654333 3455554455 8999999999985 35555554444 333322222
Q ss_pred cccCCCCccceEEEEEcCC---------CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccC
Q 026925 153 LASSKTPLGLHLEYLECEP---------DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHG 223 (230)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~ 223 (230)
..+....+..... ......+.++++++. .+|||+||+..||.++..|++.. +..+..+||
T Consensus 218 ------~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~---~~~i~~HHg 286 (814)
T COG1201 218 ------AKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLG---PDIIEVHHG 286 (814)
T ss_pred ------CCcceEEEEecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhc---CCceeeecc
Confidence 1122222222221 123455666666655 89999999999999999999983 489999999
Q ss_pred CCCCCC
Q 026925 224 KMKQVG 229 (230)
Q Consensus 224 ~~~~~e 229 (230)
++++++
T Consensus 287 SlSre~ 292 (814)
T COG1201 287 SLSREL 292 (814)
T ss_pred cccHHH
Confidence 999764
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=169.85 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=142.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|+.|||++|.|+++.+.+..+...+..++...++... . +.+.+|+|+||+.+++++.. ...+++++++
T Consensus 47 ~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~------~-s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~V 117 (819)
T TIGR01970 47 KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK------V-SRRTRLEVVTEGILTRMIQD--DPELDGVGAL 117 (819)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc------c-CCCCcEEEECCcHHHHHHhh--CcccccCCEE
Confidence 3799999999999999988654432225566665554321 1 45678999999999999875 3578999999
Q ss_pred EEeccc-cccccccHH-HHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEAD-RLLDMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad-~l~~~~~~~-~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+||+| ++++.++.- .+..+.+.++.+.|+++||||++... ...|+.++..+.+...
T Consensus 118 IiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr------------------ 176 (819)
T TIGR01970 118 IFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR------------------ 176 (819)
T ss_pred EEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc------------------
Confidence 999999 577765543 33556667788999999999999753 3567776655554322
Q ss_pred CccceEEEEEcCCCCcH-----HHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKP-----SQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~-----~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...++++|......++. ..+..++.. ..+++||||+++++++.++..|.+.. ..++.+.++||+|+++|
T Consensus 177 ~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~-~~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 177 SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERL-DSDVLICPLYGELSLAA 250 (819)
T ss_pred ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhc-CCCcEEEEecCCCCHHH
Confidence 12356666666555443 234444443 35689999999999999999998742 23799999999999754
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=170.06 Aligned_cols=197 Identities=13% Similarity=0.151 Sum_probs=142.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++|||++|.|+.+.+.+..+...+..++...++.+.. +.+.+|+|+||+++.+++.. ...+++++++
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~-------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~I 120 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV-------GPNTRLEVVTEGILTRMIQR--DPELSGVGLV 120 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc-------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEE
Confidence 37999999999999999986554332366777777665421 34567999999999999875 3579999999
Q ss_pred EEecccc-cccccc-HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADR-LLDMGF-QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~-l~~~~~-~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+||+|. .++..+ ...+..+.+.++++.|+++||||++.. . ...++.++..+.+...
T Consensus 121 IlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~--~-l~~~~~~~~~I~~~gr------------------ 179 (812)
T PRK11664 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND--R-LQQLLPDAPVIVSEGR------------------ 179 (812)
T ss_pred EEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH--H-HHHhcCCCCEEEecCc------------------
Confidence 9999996 444332 233455677788899999999999864 2 3567776665544322
Q ss_pred CccceEEEEEcCCCCcHH-----HHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPS-----QLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~-----~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.++|...+..++.. .+..++.. ..+.+||||+++++++.++..|.+.. ..++.+..+||+|+++|
T Consensus 180 ~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~-~~~~~v~~Lhg~l~~~e 253 (812)
T PRK11664 180 SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRV-ASDVLLCPLYGALSLAE 253 (812)
T ss_pred cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhc-cCCceEEEeeCCCCHHH
Confidence 123566676666555553 34444443 35789999999999999999998731 23789999999999753
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=152.16 Aligned_cols=225 Identities=13% Similarity=0.074 Sum_probs=140.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhC---CCceEEEEEcCcchHH-H------------------HHHHHhcCCcEEEEcC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTL---PDVKSVLLVGGVEVKA-D------------------VKKIEEEGANLLIGTP 59 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~---~~~~v~~~~~~~~~~~-~------------------~~~l~~~~~~Iiv~TP 59 (230)
+++++|+++|++|+++.++++...+ .+..+..+.|...... . .......+++|+++||
T Consensus 42 ~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p 121 (357)
T TIGR03158 42 TIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNP 121 (357)
T ss_pred EEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecH
Confidence 6899999999999999999987543 2466666666532210 0 0111124789999999
Q ss_pred hHHHHHHhhC---Ccc----cCCcccEEEEecccccccccc-----HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 60 GRLYDIMERM---DVL----DFRNLEILVLDEADRLLDMGF-----QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 60 ~~l~~~l~~~---~~~----~~~~l~~lVvDEad~l~~~~~-----~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
+.+..+++.. +.. .+.+++++|+||+|.+-.++. .-....+++......+++++|||+++.+...+..
T Consensus 122 ~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~ 201 (357)
T TIGR03158 122 DIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQN 201 (357)
T ss_pred HHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHh
Confidence 9998776531 111 157899999999998764431 1233334444444579999999999988887766
Q ss_pred c--cCCCeEEEEeccCcc---cccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHH-------hCCCCeEEEEcC
Q 026925 128 G--LRNPVRVEVRAESKS---HHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI-------KNKSKKIIIYFM 195 (230)
Q Consensus 128 ~--~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lIF~~ 195 (230)
. ++.+.....+..-.. ..+.......+-......+.+.+.. ....|...+..+++ ...++++|||||
T Consensus 202 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~n 280 (357)
T TIGR03158 202 AKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILD 280 (357)
T ss_pred ccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEEC
Confidence 4 455543322221000 0000000000000111356666665 44455554444333 235679999999
Q ss_pred chhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 196 TCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 196 t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
|++.|++++..|++. ..++++..+||.+++++
T Consensus 281 t~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 281 SLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKD 312 (357)
T ss_pred CHHHHHHHHHHHhhh--CCCceEEeeecCCCHHH
Confidence 999999999999976 22468889999998753
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=143.67 Aligned_cols=131 Identities=46% Similarity=0.767 Sum_probs=118.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|+.|+.+.++.+.... ++++..+.|+.+..+....+ .++++|+|+||+++..++.. ....+++++++|
T Consensus 72 viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lI 148 (203)
T cd00268 72 ALILAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKL-KRGPHIVVATPGRLLDLLER-GKLDLSKVKYLV 148 (203)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCCChhhCCEEE
Confidence 7999999999999999999998765 78999999998877776666 46899999999999999987 668899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEE
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i 135 (230)
+||+|.+.+.++...+..+.+.++...|++++|||++++...+...++.+|..+
T Consensus 149 vDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 149 LDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999998889999999999999999999999999999999999999988765
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=156.67 Aligned_cols=205 Identities=16% Similarity=0.081 Sum_probs=130.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH------------HHHHHHHh-----cCCcEEEEcChHHHH
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK------------ADVKKIEE-----EGANLLIGTPGRLYD 64 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~------------~~~~~l~~-----~~~~Iiv~TP~~l~~ 64 (230)
+++++|+++|+.|+++.+..+.+. .+..++++.... ........ ..++|+|+||+++..
T Consensus 32 ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~ 107 (358)
T TIGR01587 32 VIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLK 107 (358)
T ss_pred EEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHH
Confidence 789999999999999999997532 334444432210 11111101 236799999999988
Q ss_pred HHhh-CCc--ccCC--cccEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEe
Q 026925 65 IMER-MDV--LDFR--NLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (230)
Q Consensus 65 ~l~~-~~~--~~~~--~l~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~ 138 (230)
.+.. .+. ..+. ..+++|+||+|.+.++++.. +..+++.++ .+.|++++|||+++.+..+...+...+......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~ 186 (358)
T TIGR01587 108 SVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLD 186 (358)
T ss_pred HHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCC
Confidence 7654 111 1122 23789999999998765443 555555554 478999999999987777776654332111110
Q ss_pred ccCcccccccchhccccCCCCccceEEEEEc--CCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCC
Q 026925 139 AESKSHHVSASSQQLASSKTPLGLHLEYLEC--EPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKS 215 (230)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g 215 (230)
.. .......+.+..+ ....+...+..+++.. .++++||||||+++|+.++..|.+. ..+
T Consensus 187 ~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~--~~~ 248 (358)
T TIGR01587 187 LK----------------EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKEN--APE 248 (358)
T ss_pred Cc----------------cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhh--cCC
Confidence 00 0001112222222 2345667777777643 5679999999999999999999887 122
Q ss_pred ceEEeccCCCCCCC
Q 026925 216 LSLIPLHGKMKQVG 229 (230)
Q Consensus 216 ~~~~~lh~~~~~~e 229 (230)
.++..+||++++++
T Consensus 249 ~~~~~~h~~~~~~~ 262 (358)
T TIGR01587 249 EEIMLLHSRFTEKD 262 (358)
T ss_pred CeEEEEECCCCHHH
Confidence 36999999998753
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=160.94 Aligned_cols=196 Identities=17% Similarity=0.244 Sum_probs=129.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHH---HHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA---DVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~---~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|+++.+++++..+ ++++..++|+....+ ....+.+++++|+||||+.+. ..+.++++
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~------~~~~~~~l 358 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ------EKVEFKRL 358 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh------cccccccc
Confidence 58999999999999999999998877 799999999877654 334454567999999998753 23567899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCC--CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcccc
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~--~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
+++|+||+|++-... . ..+....+ ...+++++|||..+....+.....-+...+...+.
T Consensus 359 ~lvVIDEaH~fg~~q-r---~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~--------------- 419 (630)
T TIGR00643 359 ALVIIDEQHRFGVEQ-R---KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP--------------- 419 (630)
T ss_pred ceEEEechhhccHHH-H---HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC---------------
Confidence 999999999863221 1 22333332 26789999999766444333211111112211111
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCch--------hHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTC--------ACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~--------~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....+...+.. ...+ ..+...+.. ..+++++|||++. ..|+.++..|.+. ..++++..+||+|
T Consensus 420 --~r~~i~~~~~~--~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~--~~~~~v~~lHG~m 492 (630)
T TIGR00643 420 --GRKPITTVLIK--HDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA--FPKYNVGLLHGRM 492 (630)
T ss_pred --CCCceEEEEeC--cchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh--CCCCcEEEEeCCC
Confidence 11223333332 2222 344444432 2567899999875 5677888888765 3588999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
+++|
T Consensus 493 ~~~e 496 (630)
T TIGR00643 493 KSDE 496 (630)
T ss_pred CHHH
Confidence 8764
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-20 Score=165.04 Aligned_cols=186 Identities=16% Similarity=0.207 Sum_probs=135.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|++||+|+||.|.+..++++.. + |+++...+|+.+... +.+ .+++|+|+|||++..++++ .......++++|
T Consensus 79 ~vYivPlkALa~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~--~~l--~~~~ViVtT~EK~Dsl~R~-~~~~~~~V~lvV 151 (766)
T COG1204 79 VVYIVPLKALAEEKYEEFSRLEE-L-GIRVGISTGDYDLDD--ERL--ARYDVIVTTPEKLDSLTRK-RPSWIEEVDLVV 151 (766)
T ss_pred EEEEeChHHHHHHHHHHhhhHHh-c-CCEEEEecCCcccch--hhh--ccCCEEEEchHHhhHhhhc-CcchhhcccEEE
Confidence 79999999999999999996654 4 899999999987544 222 6799999999999999998 656889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCC---CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPK---LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~---~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
+||+|.+.+...++.++.|..+++. ..|++++|||+++ ...++.+.-.++..-.+.+.+ ...
T Consensus 152 iDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~--------------l~~ 216 (766)
T COG1204 152 IDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVP--------------LRR 216 (766)
T ss_pred EeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcc--------------ccc
Confidence 9999988777677777777766653 4799999999996 466666543344422222221 223
Q ss_pred CccceEEEEEcCCCCc-------HHHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhh
Q 026925 159 PLGLHLEYLECEPDEK-------PSQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k-------~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
+......++......| ...+...+.. ..++++||||+|++.+...++.+..
T Consensus 217 ~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 217 GVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred CCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHH
Confidence 3334445555554333 2333333333 3667999999999999999999984
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=157.80 Aligned_cols=206 Identities=12% Similarity=0.115 Sum_probs=127.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||++|+.|+.+.+++++.. +...+..+.+|... ..+++|+|+||+++.+... ..+++++++|
T Consensus 161 vLilvpt~eL~~Q~~~~l~~~~~~-~~~~~~~i~~g~~~--------~~~~~I~VaT~qsl~~~~~----~~~~~~~~iI 227 (501)
T PHA02558 161 VLIIVPTTSLVTQMIDDFVDYRLF-PREAMHKIYSGTAK--------DTDAPIVVSTWQSAVKQPK----EWFDQFGMVI 227 (501)
T ss_pred EEEEECcHHHHHHHHHHHHHhccc-cccceeEEecCccc--------CCCCCEEEeeHHHHhhchh----hhccccCEEE
Confidence 799999999999999999998643 24455556666543 1457899999999865432 2468899999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHH--HhccCCCeEEEEeccC--cccccccch-----hc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS--KAGLRNPVRVEVRAES--KSHHVSASS-----QQ 152 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~--~~~~~~~~~i~~~~~~--~~~~~~~~~-----~~ 152 (230)
+||||++.+.. +..++..+++..++++||||+.+...... ..+++ |....+.... ..+.+.... ..
T Consensus 228 vDEaH~~~~~~----~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~ 302 (501)
T PHA02558 228 VDECHLFTGKS----LTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLR 302 (501)
T ss_pred EEchhcccchh----HHHHHHhhhccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEecc
Confidence 99999997644 45677778778899999999875322111 11122 2221111110 000000000 00
Q ss_pred cccCCCC----ccceE-EEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 153 LASSKTP----LGLHL-EYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 153 ~~~~~~~----~~i~~-~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....... ...+. .....+...|...+..++.. ..+.+++|||++.++|+.++..|.+. |.++..+||+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~----g~~v~~i~G~~ 378 (501)
T PHA02558 303 YPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV----YDKVYYVSGEV 378 (501)
T ss_pred CCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc----CCCEEEEeCCC
Confidence 0000000 00000 00111233455555555442 24578999999999999999999998 99999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
+++|
T Consensus 379 ~~~e 382 (501)
T PHA02558 379 DTED 382 (501)
T ss_pred CHHH
Confidence 9764
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=130.49 Aligned_cols=120 Identities=33% Similarity=0.530 Sum_probs=102.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|+++|++|+.+.+.++.... ++++..+.++.....+......++++|+|+||+++.+++.. +...+.+++++|
T Consensus 47 ~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~iV 124 (169)
T PF00270_consen 47 VLIIVPTRALAEQQFERLRKFFSNT-NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISN-GKINISRLSLIV 124 (169)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT-TSSTGTTESEEE
T ss_pred EEEEeeccccccccccccccccccc-ccccccccccccccccccccccccccccccCcchhhccccc-cccccccceeec
Confidence 7999999999999999999998763 78999999988766444444367899999999999999987 555778899999
Q ss_pred EeccccccccccHHHHHHHHHhCC--CCCcEEEEeecCchHHHH
Q 026925 82 LDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEAVEE 123 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~--~~~q~i~~SAt~~~~~~~ 123 (230)
+||+|.+.++++...+..+++.+. .+.|++++|||+++.++.
T Consensus 125 iDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 125 IDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp EETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHHH
T ss_pred cCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHhh
Confidence 999999998888889999988874 368999999999976654
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-19 Score=151.45 Aligned_cols=200 Identities=18% Similarity=0.192 Sum_probs=140.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
..|||+|.-.|-+ ++...+... |+++..+++.-+.++... .+..+..++++-+||++..---. ..+.-..+
T Consensus 59 ~TLVVSPLiSLM~---DQV~~l~~~--Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i 132 (590)
T COG0514 59 LTLVVSPLISLMK---DQVDQLEAA--GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPI 132 (590)
T ss_pred CEEEECchHHHHH---HHHHHHHHc--CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCC
Confidence 3689999666654 455555444 789999888755544333 44456689999999997553111 22335778
Q ss_pred cEEEEeccccccccc--cHHHHHHHHHhCC--CCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcccccccchh
Q 026925 78 EILVLDEADRLLDMG--FQKQISYIISRLP--KLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 78 ~~lVvDEad~l~~~~--~~~~~~~i~~~l~--~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 151 (230)
.+++|||||++..|| |++++.++..... ++..++++|||.++.+...+...+. .+..+....
T Consensus 133 ~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf------------ 200 (590)
T COG0514 133 SLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF------------ 200 (590)
T ss_pred ceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC------------
Confidence 899999999999998 9999988754432 2788999999999999887777655 444443322
Q ss_pred ccccCCCCccceEEEEEcC-CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 152 QLASSKTPLGLHLEYLECE-PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+|+...+.... ...+...+.. ......+..||||.|++.|++++..|... |+++..+||||+.+|
T Consensus 201 ------dRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~----g~~a~~YHaGl~~~e 268 (590)
T COG0514 201 ------DRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN----GISAGAYHAGLSNEE 268 (590)
T ss_pred ------CCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC----CCceEEecCCCCHHH
Confidence 2345543333332 2233332222 12556678999999999999999999998 999999999998754
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-18 Score=152.81 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=148.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC-CceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC---cccCCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD---VLDFRN 76 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~---~~~~~~ 76 (230)
.||+|.||++||+.....++++...++ ++.+...+|+.+..+....+ .++|+||+|||.++..++-..+ .+.+++
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~-~~pp~IllTNpdMLh~~llr~~~~~~~~~~~ 195 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAII-RNPPDILLTNPDMLHYLLLRNHDAWLWLLRN 195 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHH-hCCCCEEEeCHHHHHHHhccCcchHHHHHhc
Confidence 379999999999999999999999986 58888888888766554444 7999999999999988554312 234788
Q ss_pred ccEEEEeccccccccccHHHHHHHHHh-------CCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccc
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIISR-------LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSAS 149 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~~-------l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 149 (230)
+++||+||+| .....|+.++--++++ .+...|+|+.|||+.+. .++...++.......+..+
T Consensus 196 Lk~lVvDElH-tYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~--------- 264 (851)
T COG1205 196 LKYLVVDELH-TYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDED--------- 264 (851)
T ss_pred CcEEEEecce-eccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCC---------
Confidence 9999999999 5665555554333333 34578999999999875 6666666665554433222
Q ss_pred hhccccCCCCccceEEEEEcC---------CCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCC---
Q 026925 150 SQQLASSKTPLGLHLEYLECE---------PDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKS--- 215 (230)
Q Consensus 150 ~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g--- 215 (230)
..+....+++..-+ ..++......+... ..+-++|+|+.+++.|+.++..........+
T Consensus 265 -------g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l 337 (851)
T COG1205 265 -------GSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKL 337 (851)
T ss_pred -------CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhh
Confidence 35555565555555 23455555555443 3667999999999999999744333332235
Q ss_pred -ceEEeccCCCCCCC
Q 026925 216 -LSLIPLHGKMKQVG 229 (230)
Q Consensus 216 -~~~~~lh~~~~~~e 229 (230)
..+...+|+|..+|
T Consensus 338 ~~~v~~~~~~~~~~e 352 (851)
T COG1205 338 LDAVSTYRAGLHREE 352 (851)
T ss_pred hhheeeccccCCHHH
Confidence 67888999987654
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=154.10 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=145.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC--cccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD--VLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~--~~~~~~l~~ 79 (230)
+|+|+|+|+||.++.+.+.+-...+ |+++..++|+.+..+.. + ..++|||+|||+..-.-+... .-.++.+++
T Consensus 167 iVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~te--i--~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~L 241 (1230)
T KOG0952|consen 167 IVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTE--I--ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRL 241 (1230)
T ss_pred EEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHH--H--HhcCEEEecccceeeeeeeeccchhhhhheee
Confidence 5899999999999888888777777 89999999998866544 3 458999999999655444311 123688999
Q ss_pred EEEeccccccccccHHHHHHHHHhC-------CCCCcEEEEeecCchHHHHHHHhccCCC--eEEEEeccCcccccccch
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNP--VRVEVRAESKSHHVSASS 150 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l-------~~~~q~i~~SAt~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~ 150 (230)
+|+||+|. +....++.++.|+.+. ....+++++|||+|+. + -...|++-+ .-+..-+.
T Consensus 242 viIDEVHl-Lhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-e-DvA~fL~vn~~~glfsFd~---------- 308 (1230)
T KOG0952|consen 242 VIIDEVHL-LHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-E-DVARFLRVNPYAGLFSFDQ---------- 308 (1230)
T ss_pred EEeeeehh-hcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-H-HHHHHhcCCCccceeeecc----------
Confidence 99999995 4555677777776554 3467899999999974 3 334455532 23333334
Q ss_pred hccccCCCCccceEEEEEcCCCCcHHHHH---------HHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEe
Q 026925 151 QQLASSKTPLGLHLEYLECEPDEKPSQLV---------DLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIP 220 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~---------~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~ 220 (230)
...|-.+.+.++.++.. |...-. +.++ -..+++++|||.++..+.+.|+.|.+.....|....+
T Consensus 309 -----~yRPvpL~~~~iG~k~~-~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f 382 (1230)
T KOG0952|consen 309 -----RYRPVPLTQGFIGIKGK-KNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLF 382 (1230)
T ss_pred -----cccccceeeeEEeeecc-cchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCccccc
Confidence 57888899999998876 221111 1112 1367899999999999999999999997777888777
Q ss_pred ccCC
Q 026925 221 LHGK 224 (230)
Q Consensus 221 lh~~ 224 (230)
+|+.
T Consensus 383 ~~~~ 386 (1230)
T KOG0952|consen 383 LPSP 386 (1230)
T ss_pred CCCh
Confidence 7765
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=145.61 Aligned_cols=204 Identities=17% Similarity=0.142 Sum_probs=146.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCC---------
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD--------- 70 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~--------- 70 (230)
+++|++||++||.|.+.++.++...+ +++++.+.|+.+.. .... ..++||++||...+ -++++.+-
T Consensus 146 ~v~VvTptreLA~qdae~~~~l~~~l-Glsv~~i~gg~~~~--~r~~-~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~ 221 (656)
T PRK12898 146 PVHVITVNDYLAERDAELMRPLYEAL-GLTVGCVVEDQSPD--ERRA-AYGADITYCTNKELVFDYLRDRLALGQRASDA 221 (656)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhc-CCEEEEEeCCCCHH--HHHH-HcCCCEEEECCCchhhhhccccccccccccch
Confidence 47999999999999999999999887 89999999997653 2333 36799999999987 44454310
Q ss_pred ---------------cccCCcccEEEEecccccc-ccc-----------------cHHHHHHHHHhCCC-----------
Q 026925 71 ---------------VLDFRNLEILVLDEADRLL-DMG-----------------FQKQISYIISRLPK----------- 106 (230)
Q Consensus 71 ---------------~~~~~~l~~lVvDEad~l~-~~~-----------------~~~~~~~i~~~l~~----------- 106 (230)
..-.+.+.+.||||+|.++ |.. .......+...+..
T Consensus 222 ~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~ 301 (656)
T PRK12898 222 RLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEK 301 (656)
T ss_pred hhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCC
Confidence 0113668899999999886 311 00001111110000
Q ss_pred ---------------------------------------------C----------------------------------
Q 026925 107 ---------------------------------------------L---------------------------------- 107 (230)
Q Consensus 107 ---------------------------------------------~---------------------------------- 107 (230)
+
T Consensus 302 ~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQai 381 (656)
T PRK12898 302 RIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMI 381 (656)
T ss_pred eEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHH
Confidence 0
Q ss_pred ---------------------------CcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 108 ---------------------------RRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 108 ---------------------------~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
..+.+||||.+....++...|.-++..|-.... ...
T Consensus 382 eaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp-----------------~~r 444 (656)
T PRK12898 382 EAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRP-----------------SQR 444 (656)
T ss_pred HHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCC-----------------ccc
Confidence 135699999998888888888777665543222 122
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.++.+...+|+..+.++++.. .++++||||+|++.++.++..|.+. |+++.++||+++++|
T Consensus 445 ~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~----gi~~~~Lhg~~~~rE 511 (656)
T PRK12898 445 RHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREA----GLPHQVLNAKQDAEE 511 (656)
T ss_pred eecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC----CCCEEEeeCCcHHHH
Confidence 2344556667788999999999764 3578999999999999999999988 999999999876543
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=142.13 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=69.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~~~ 74 (230)
.|.|++||++||.|.+.++.++...+ +++++.+.|+.+..++.+.. .++||++|||+++ .++++.. ....+
T Consensus 121 ~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~ 197 (790)
T PRK09200 121 GVHLITVNDYLAKRDAEEMGQVYEFL-GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQ 197 (790)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcc
Confidence 47899999999999999999999988 99999999998733333332 5699999999998 4555431 11346
Q ss_pred CcccEEEEecccccc
Q 026925 75 RNLEILVLDEADRLL 89 (230)
Q Consensus 75 ~~l~~lVvDEad~l~ 89 (230)
+.+.++|+||||.|+
T Consensus 198 r~~~~~IvDEaDsiL 212 (790)
T PRK09200 198 RPLNYAIIDEIDSIL 212 (790)
T ss_pred cccceEEEeccccce
Confidence 889999999999996
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-16 Score=141.75 Aligned_cols=113 Identities=20% Similarity=0.252 Sum_probs=85.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||++|+.|+...++++... ++.++..++|+.+..+....+ .+++|+|+||+.+...+.. +.+.+.+++++|
T Consensus 61 vLvl~Pt~~L~~Q~~~~~~~~~~~-~~~~v~~~~g~~~~~~r~~~~--~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liV 136 (773)
T PRK13766 61 VLILAPTKPLVEQHAEFFRKFLNI-PEEKIVVFTGEVSPEKRAELW--EKAKVIVATPQVIENDLIA-GRISLEDVSLLI 136 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhCC-CCceEEEEeCCCCHHHHHHHH--hCCCEEEECHHHHHHHHHc-CCCChhhCcEEE
Confidence 799999999999999999988643 245788888887765443333 5689999999999887766 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+||||++........+...........+++++|||..
T Consensus 137 vDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~ 173 (773)
T PRK13766 137 FDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPG 173 (773)
T ss_pred EECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCC
Confidence 9999998754323333333333345677999999974
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-16 Score=139.64 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=66.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc---hHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----Ccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE---VKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVL 72 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~---~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~ 72 (230)
++|++||++||.|...++..+...+ ++++....++.. ...+.... ..++||++|||+++ .++++.. ...
T Consensus 114 V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~~~~~s~~~~~~~~~rr~-~y~~dIvygTp~~LgfDyLrD~l~~~~~~~ 191 (762)
T TIGR03714 114 AMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSLGVVDDPDEEYDANEKRK-IYNSDIVYTTNSALGFDYLIDNLASNKEGK 191 (762)
T ss_pred eEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEEEECCCCccccCHHHHHH-hCCCCEEEECchhhhhhHHHHHhhcchhhc
Confidence 6899999999999999999999888 899888776522 11222232 36799999999999 4555431 234
Q ss_pred cCCcccEEEEecccccc
Q 026925 73 DFRNLEILVLDEADRLL 89 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l~ 89 (230)
.++++.++|+||||.|+
T Consensus 192 ~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 192 FLRPFNYVIVDEVDSVL 208 (762)
T ss_pred ccccCcEEEEecHhhHh
Confidence 47889999999999995
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-16 Score=144.76 Aligned_cols=183 Identities=18% Similarity=0.240 Sum_probs=121.5
Q ss_pred ChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccc-
Q 026925 8 TRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD- 86 (230)
Q Consensus 8 t~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad- 86 (230)
+++||.|+..++..-.+...|..+ .. ..+. ..+++|+|+||++|++.+.. .. .+++++++||||||
T Consensus 131 ArsLA~RVA~El~~~lG~~VGY~v----rf---~~~~----s~~t~I~v~TpG~LL~~l~~-d~-~Ls~~~~IIIDEAHE 197 (1294)
T PRK11131 131 ARTVANRIAEELETELGGCVGYKV----RF---NDQV----SDNTMVKLMTDGILLAEIQQ-DR-LLMQYDTIIIDEAHE 197 (1294)
T ss_pred HHHHHHHHHHHHhhhhcceeceee----cC---cccc----CCCCCEEEEChHHHHHHHhc-CC-ccccCcEEEecCccc
Confidence 579999998888753222113221 11 1111 35689999999999999876 43 48999999999999
Q ss_pred cccccccHH-HHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEE
Q 026925 87 RLLDMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLE 165 (230)
Q Consensus 87 ~l~~~~~~~-~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (230)
++++.+|.. .+..++... ++.|++++|||++. ..+.+.|...| .+.+... . ..+.++
T Consensus 198 RsLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr----------------~--~pVei~ 255 (1294)
T PRK11131 198 RSLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGR----------------T--YPVEVR 255 (1294)
T ss_pred cccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCc----------------c--ccceEE
Confidence 688877654 344444332 46799999999975 46666555555 3444332 1 124455
Q ss_pred EEEcCCCC---cHHHHHHHH---H---hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCc---eEEeccCCCCCCC
Q 026925 166 YLECEPDE---KPSQLVDLL---I---KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL---SLIPLHGKMKQVG 229 (230)
Q Consensus 166 ~~~~~~~~---k~~~l~~ll---~---~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~---~~~~lh~~~~~~e 229 (230)
+......+ +.+.+..++ . ..+.+.+||||+++++++.++..|.+. ++ .+.++||+|+++|
T Consensus 256 y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~----~~~~~~VlpLhg~Ls~~e 327 (1294)
T PRK11131 256 YRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKL----NLRHTEILPLYARLSNSE 327 (1294)
T ss_pred EeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhc----CCCcceEeecccCCCHHH
Confidence 55543322 233333332 2 345678999999999999999999886 55 4778999999754
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=142.29 Aligned_cols=202 Identities=18% Similarity=0.160 Sum_probs=145.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhc--CCcEEEEcChHHHHHHhhC-CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEE--GANLLIGTPGRLYDIMERM-DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~--~~~Iiv~TP~~l~~~l~~~-~~~~~ 74 (230)
+.|||.|-..| +.++...+... ++....+.++-...++.. .+.++ ..+|+.-|||++...-... ....+
T Consensus 306 itvVISPL~SL---m~DQv~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L 380 (941)
T KOG0351|consen 306 VTVVISPLISL---MQDQVTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADL 380 (941)
T ss_pred ceEEeccHHHH---HHHHHHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhc
Confidence 35899995555 56677777443 788888888766653333 33344 6899999999976532210 22234
Q ss_pred Cc---ccEEEEeccccccccc--cHHHHHHHHHhC--CCCCcEEEEeecCchHHHHHHHhccC--CCeEEEEeccCcccc
Q 026925 75 RN---LEILVLDEADRLLDMG--FQKQISYIISRL--PKLRRTGLFSATQTEAVEELSKAGLR--NPVRVEVRAESKSHH 145 (230)
Q Consensus 75 ~~---l~~lVvDEad~l~~~~--~~~~~~~i~~~l--~~~~q~i~~SAt~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 145 (230)
.. +..+||||||++..|| |+++++++.... ...+.++++|||.+..++.-....++ ++..+. .
T Consensus 381 ~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~------ 452 (941)
T KOG0351|consen 381 YARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK--S------ 452 (941)
T ss_pred cCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec--c------
Confidence 44 8999999999999998 999988864332 23478999999999999887777655 555332 2
Q ss_pred cccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 146 VSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 146 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
...+.|+...+..-........+...++ .+..+.+||||.++++|+.++..|+.. |.++..+|+|
T Consensus 453 ----------sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~----~~~a~~YHAG 518 (941)
T KOG0351|consen 453 ----------SFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL----GKSAAFYHAG 518 (941)
T ss_pred ----------cCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh----chhhHhhhcC
Confidence 2345666665555443444444445554 457789999999999999999999999 9999999999
Q ss_pred CCCCC
Q 026925 225 MKQVG 229 (230)
Q Consensus 225 ~~~~e 229 (230)
|+.++
T Consensus 519 l~~~~ 523 (941)
T KOG0351|consen 519 LPPKE 523 (941)
T ss_pred CCHHH
Confidence 99764
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-16 Score=136.12 Aligned_cols=84 Identities=15% Similarity=0.234 Sum_probs=72.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCC------ccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD------VLD 73 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~------~~~ 73 (230)
.+.|++||++||.|.+.++.++...+ ++++..+.|+.+..++...+ .+||++|||++| .++++. + ...
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~L-GLsv~~i~g~~~~~~r~~~y---~~dIvyGT~~rlgfDyLrd-~~~~~~~~~~ 173 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFL-GLSVGLILSGMSPEERREAY---ACDITYGTNNELGFDYLRD-NMAHSKEEKV 173 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CCeEEEEeCCCCHHHHHHhc---CCCEEEECCCchhhHHHhc-ccccchhhhh
Confidence 37899999999999999999999888 89999999998765544433 489999999999 888876 3 346
Q ss_pred CCcccEEEEecccccc
Q 026925 74 FRNLEILVLDEADRLL 89 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~ 89 (230)
++++.++||||+|.++
T Consensus 174 ~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 174 QRPFHFAIIDEVDSIL 189 (745)
T ss_pred ccccceeEeecHHHHh
Confidence 7999999999999996
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=137.11 Aligned_cols=84 Identities=18% Similarity=0.297 Sum_probs=72.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCCcccC-----C
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDF-----R 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~~~~~-----~ 75 (230)
+.|++||++||.|.+.++..+...+ ++++..+.|+.+..++...+ .+||++|||++| .++++.+-.+++ +
T Consensus 126 V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r 201 (896)
T PRK13104 126 VHIVTVNDYLAKRDSQWMKPIYEFL-GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQR 201 (896)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhcc
Confidence 7899999999999999999999888 89999999998776655444 589999999999 888887324444 6
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.++||||||.|+
T Consensus 202 ~l~~~IvDEaDsiL 215 (896)
T PRK13104 202 ELNFAIVDEVDSIL 215 (896)
T ss_pred ccceEEeccHhhhh
Confidence 89999999999997
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-15 Score=123.96 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=96.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+++||+-|+.|....|+++++- |.-.++.++|....++....+. +.+|+|+||+.+..-+.. +.+++.++.++|
T Consensus 61 vlfLAPTKPLV~Qh~~~~~~v~~i-p~~~i~~ltGev~p~~R~~~w~--~~kVfvaTPQvveNDl~~-Grid~~dv~~li 136 (542)
T COG1111 61 VLFLAPTKPLVLQHAEFCRKVTGI-PEDEIAALTGEVRPEEREELWA--KKKVFVATPQVVENDLKA-GRIDLDDVSLLI 136 (542)
T ss_pred EEEecCCchHHHHHHHHHHHHhCC-ChhheeeecCCCChHHHHHHHh--hCCEEEeccHHHHhHHhc-CccChHHceEEE
Confidence 789999999999999999999853 4568889999999988888874 467999999999988888 999999999999
Q ss_pred Eeccccccccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 82 LDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 82 vDEad~l~~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
+||||+-...- |....+..++ ...++.++++|||...+.+...+
T Consensus 137 fDEAHRAvGnyAYv~Va~~y~~-~~k~~~ilgLTASPGs~~ekI~e 181 (542)
T COG1111 137 FDEAHRAVGNYAYVFVAKEYLR-SAKNPLILGLTASPGSDLEKIQE 181 (542)
T ss_pred echhhhccCcchHHHHHHHHHH-hccCceEEEEecCCCCCHHHHHH
Confidence 99999976542 4443343333 33577899999998766555444
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=136.78 Aligned_cols=196 Identities=17% Similarity=0.216 Sum_probs=152.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
||.|||||--||+|.++.++.-..++ ++++..+..=.+..++.. .+.+++.||+|||.. ++. +.+.++++
T Consensus 645 QVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~--kdv~FkdL 717 (1139)
T COG1197 645 QVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLS--KDVKFKDL 717 (1139)
T ss_pred eEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhC--CCcEEecC
Confidence 68999999999999999999988888 699988876555544444 455688999999984 333 67889999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
.++||||=|++ +-.-+.-++.+..+.-++-+|||.-|....+....+++-..|...+.
T Consensus 718 GLlIIDEEqRF-----GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~----------------- 775 (1139)
T COG1197 718 GLLIIDEEQRF-----GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE----------------- 775 (1139)
T ss_pred CeEEEechhhc-----CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC-----------------
Confidence 99999999985 44444556677789999999999988899999999999998877666
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..-.++.++..-++.--.+.+++-+ ..++++..-+|.+++.++++..|++. -+..++++.||.|+.+|
T Consensus 776 ~R~pV~T~V~~~d~~~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~L--VPEarI~vaHGQM~e~e 843 (1139)
T COG1197 776 DRLPVKTFVSEYDDLLIREAILREL--LRGGQVFYVHNRVESIEKKAERLREL--VPEARIAVAHGQMRERE 843 (1139)
T ss_pred CCcceEEEEecCChHHHHHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHh--CCceEEEEeecCCCHHH
Confidence 2333444444433332223333222 25678999999999999999999999 78999999999999765
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=130.44 Aligned_cols=84 Identities=18% Similarity=0.274 Sum_probs=71.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCCc-----ccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDV-----LDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~~-----~~~~ 75 (230)
+-|++||..||.|.+.++..+...+ +++++.+.|+.+..++...+ .+||++|||++| .++++..-. ...+
T Consensus 125 V~IvTpn~yLA~rd~e~~~~l~~~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r 200 (830)
T PRK12904 125 VHVVTVNDYLAKRDAEWMGPLYEFL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQR 200 (830)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhccc
Confidence 5689999999999999999999888 99999999998877665554 489999999999 888876221 2368
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.+.||||||.|+
T Consensus 201 ~~~~aIvDEaDsiL 214 (830)
T PRK12904 201 GLNYAIVDEVDSIL 214 (830)
T ss_pred ccceEEEechhhhe
Confidence 89999999999986
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-15 Score=134.39 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=130.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~l 80 (230)
+++++|+++||+.+-..+.+-...+ +++|...+|+.....+. -.+.+|||||||+..-.-++++.. ..+-++.+
T Consensus 367 IVYIAPmKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~q----ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLl 441 (1674)
T KOG0951|consen 367 IVYIAPMKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQ----IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLL 441 (1674)
T ss_pred EEEEeeHHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhh----hhcceeEEeccchhhhhhcccCchhHHHHHHHH
Confidence 5799999999999888877777777 99999999987644332 256789999999954444432211 24567899
Q ss_pred EEeccccccccccHHHHHHHHHhCC-------CCCcEEEEeecCchHHHHHHHhccC-CC-eEEEEeccCcccccccchh
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLR-NP-VRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~-------~~~q~i~~SAt~~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~~~~~ 151 (230)
|+||+|. +....++.++.|..+.. ..++.+++|||+|+. .-...|++ ++ ...... .
T Consensus 442 IIDEIHL-LhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd-~----------- 506 (1674)
T KOG0951|consen 442 IIDEIHL-LHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFD-S----------- 506 (1674)
T ss_pred hhhhhhh-cccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccC-c-----------
Confidence 9999995 44445777777765442 357899999999975 22333333 22 233332 2
Q ss_pred ccccCCCCccceEEEEEcCCCCcHHH--------HHHHHHhCCCCeEEEEcCchhHHHHHHHHhh
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPSQ--------LVDLLIKNKSKKIIIYFMTCACVDYWGVVLP 208 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~--------l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~ 208 (230)
..+|..+.|.++.+.+.+.... +.+.++..+..++|||+-+++++-+.|++++
T Consensus 507 ----syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIR 567 (1674)
T KOG0951|consen 507 ----SYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIR 567 (1674)
T ss_pred ----ccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHH
Confidence 4788999999999987654432 3345555566899999999999999999887
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-13 Score=115.95 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=77.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++|+.+|+.|+.+.+++.. +.++..++|+.+..+... .+.++.++|+|||+..+. ..++++
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf--------~p~~~l 94 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF--------LPFKNL 94 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc--------CcccCC
Confidence 48999999999999999988753 557788888776554433 344567899999998652 246789
Q ss_pred cEEEEeccccccccc-----c-HHHHHHHHHhCCCCCcEEEEeecCchHHHH
Q 026925 78 EILVLDEADRLLDMG-----F-QKQISYIISRLPKLRRTGLFSATQTEAVEE 123 (230)
Q Consensus 78 ~~lVvDEad~l~~~~-----~-~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~ 123 (230)
+++||||.|...-++ | ..++-..... ..+.+++++|||.+.+...
T Consensus 95 ~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 95 GLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLESYH 145 (505)
T ss_pred CEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHHHHH
Confidence 999999999876332 1 1222222233 3578999999996644333
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=123.67 Aligned_cols=224 Identities=12% Similarity=0.095 Sum_probs=122.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhh-CCCceEEEEEcCcchHHHHH--------------------HHHh---c---CCcE
Q 026925 2 GMIISPTRELSSQIYHVAQPFIST-LPDVKSVLLVGGVEVKADVK--------------------KIEE---E---GANL 54 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~~--------------------~l~~---~---~~~I 54 (230)
+++..||+++++|++..++++... +++..+..++|......... .... + -.+|
T Consensus 334 i~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi 413 (878)
T PRK09694 334 IIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQI 413 (878)
T ss_pred EEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCE
Confidence 578899999999999999876543 22456777776543211110 1111 1 1689
Q ss_pred EEEcChHHHHHHhhCCcccCCcc----cEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHH-HHhc
Q 026925 55 LIGTPGRLYDIMERMDVLDFRNL----EILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEEL-SKAG 128 (230)
Q Consensus 55 iv~TP~~l~~~l~~~~~~~~~~l----~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~-~~~~ 128 (230)
+|||+.+++..+-..+...++.+ +.+||||+|.. +.-....+..+++.+. ....+|++|||+|...+.. .+.|
T Consensus 414 ~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 414 GVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY 492 (878)
T ss_pred EEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Confidence 99999998755433133333333 48999999976 4333445555665543 3567999999999877654 3333
Q ss_pred cCC-Ce-------EEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCc-HHHHHHHHHh-CCCCeEEEEcCchh
Q 026925 129 LRN-PV-------RVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEK-PSQLVDLLIK-NKSKKIIIYFMTCA 198 (230)
Q Consensus 129 ~~~-~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k-~~~l~~ll~~-~~~~~~lIF~~t~~ 198 (230)
-.. +. .++................ .....+..+.-.......... ...+..+++. ..+++++|||||++
T Consensus 493 ~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~ 571 (878)
T PRK09694 493 GGHDPVELSSAYPLITWRGVNGAQRFDLSAHP-EQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVD 571 (878)
T ss_pred ccccccccccccccccccccccceeeeccccc-cccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 111 10 0000000000000000000 000000111100111111122 2333334432 35679999999999
Q ss_pred HHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 199 CVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 199 ~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.|+++++.|++.. ..+.++..+||.+++.
T Consensus 572 ~Aq~ly~~L~~~~-~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 572 DAQKLYQRLKELN-NTQVDIDLFHARFTLN 600 (878)
T ss_pred HHHHHHHHHHhhC-CCCceEEEEeCCCCHH
Confidence 9999999999762 1136899999998764
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-13 Score=116.71 Aligned_cols=195 Identities=16% Similarity=0.269 Sum_probs=135.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
|+..++||--||+|.+..+.++...+ ++++..++|..... +..+.+.++..||+|||.+- +. ....++++
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL----iQ--d~V~F~~L 385 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL----IQ--DKVEFHNL 385 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh----hh--cceeecce
Confidence 67899999999999999999999988 89999999876543 44456666779999999974 33 45778999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCC-CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS 156 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~-~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 156 (230)
.++|+||-|++ +-.=+..+..-.. ....+.||||.-+ +.++...+.+-..=.+ ++. +
T Consensus 386 gLVIiDEQHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIP--RTLAlt~fgDldvS~I-dEl--------------P 443 (677)
T COG1200 386 GLVIIDEQHRF-----GVHQRLALREKGEQNPHVLVMTATPIP--RTLALTAFGDLDVSII-DEL--------------P 443 (677)
T ss_pred eEEEEeccccc-----cHHHHHHHHHhCCCCCcEEEEeCCCch--HHHHHHHhccccchhh-ccC--------------C
Confidence 99999999985 4433444444445 6788999999766 4555555554332111 220 1
Q ss_pred CCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCch--------hHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 157 KTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTC--------ACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 157 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~--------~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.-...|+.+++.. ++...+.+.+++ .+++++-+-|+-. +.|+.++..|+.. .+++++..+||.|+
T Consensus 444 ~GRkpI~T~~i~~---~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~--~~~~~vgL~HGrm~ 518 (677)
T COG1200 444 PGRKPITTVVIPH---ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSF--LPELKVGLVHGRMK 518 (677)
T ss_pred CCCCceEEEEecc---ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHH--cccceeEEEecCCC
Confidence 1223345444443 333333333332 2677899999853 4678888999865 67889999999999
Q ss_pred CCC
Q 026925 227 QVG 229 (230)
Q Consensus 227 ~~e 229 (230)
.+|
T Consensus 519 ~~e 521 (677)
T COG1200 519 PAE 521 (677)
T ss_pred hHH
Confidence 765
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-13 Score=119.58 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=80.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
++|||+||++|+.|+.+.+++.. +.++..++|+.+..+... .+..+.++|+||||..+. ..++++
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l 259 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNL 259 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCC
Confidence 47999999999999999888753 568888999877654443 334567899999997642 346889
Q ss_pred cEEEEecccccccccc---HHHHHH--HHHhCCCCCcEEEEeecCchHHHHHH
Q 026925 78 EILVLDEADRLLDMGF---QKQISY--IISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~---~~~~~~--i~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
+++|+||+|...-++. ..+.+. +......+.+++++|||.+.+.....
T Consensus 260 ~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 260 GLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred CEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 9999999997653321 111122 23334468899999999775544444
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-13 Score=123.82 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=106.9
Q ss_pred hcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccc-cccccccHHH-HHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 49 EEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD-RLLDMGFQKQ-ISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 49 ~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad-~l~~~~~~~~-~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
+.+..|.++||+.|++.+.. . -.+++++++|||||| ++++.++.-. ++.++... +..|++++|||++. ..+.+
T Consensus 154 s~~T~I~~~TdGiLLr~l~~-d-~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~ 228 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQ-D-RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSR 228 (1283)
T ss_pred CCCceeeeccccHHHHHhhh-C-cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHH
Confidence 45678999999999998876 3 348999999999999 6888776653 56666554 47899999999974 56666
Q ss_pred hccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCC------CCcHHHHHHHHH---hCCCCeEEEEcCch
Q 026925 127 AGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEP------DEKPSQLVDLLI---KNKSKKIIIYFMTC 197 (230)
Q Consensus 127 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~---~~~~~~~lIF~~t~ 197 (230)
.|...|. +.+... .. .+..+|..... .++...+...+. ....+.+|||++++
T Consensus 229 ~F~~apv-I~V~Gr----------------~~--PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 229 HFNNAPI-IEVSGR----------------TY--PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred HhcCCCE-EEECCC----------------cc--cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 5544443 444322 11 12333333321 123344444333 23557899999999
Q ss_pred hHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 198 ACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 198 ~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++++.++..|.+.. .++..+.++||+|+++|
T Consensus 290 ~EI~~l~~~L~~~~-~~~~~VlpLhg~Ls~~e 320 (1283)
T TIGR01967 290 REIRDAAEILRKRN-LRHTEILPLYARLSNKE 320 (1283)
T ss_pred HHHHHHHHHHHhcC-CCCcEEEeccCCCCHHH
Confidence 99999999998762 23457899999999754
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-14 Score=116.77 Aligned_cols=198 Identities=18% Similarity=0.132 Sum_probs=134.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---Hhc--CCcEEEEcChHHHH-----HHhhCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEE--GANLLIGTPGRLYD-----IMERMD 70 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~--~~~Iiv~TP~~l~~-----~l~~~~ 70 (230)
+.+|+.|.-+|....-+++.+| .+++..+++.-+..+..+.+ ... ...++.-|||.... ++. +
T Consensus 63 ITIV~SPLiALIkDQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn--~ 135 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN--G 135 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH--H
Confidence 3589999888887777777766 57777777776655444433 223 35789999998432 221 2
Q ss_pred cccCCcccEEEEeccccccccc--cHHHHHHHHHhCC--CCCcEEEEeecCchHHHHHHHh--ccCCCeEEEEeccCccc
Q 026925 71 VLDFRNLEILVLDEADRLLDMG--FQKQISYIISRLP--KLRRTGLFSATQTEAVEELSKA--GLRNPVRVEVRAESKSH 144 (230)
Q Consensus 71 ~~~~~~l~~lVvDEad~l~~~~--~~~~~~~i~~~l~--~~~q~i~~SAt~~~~~~~~~~~--~~~~~~~i~~~~~~~~~ 144 (230)
...-.-+.++||||||++..|| |++++.++-.... .....++++||.++.+.+-.-. -+++|+.+.-.+.
T Consensus 136 L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~---- 211 (641)
T KOG0352|consen 136 LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT---- 211 (641)
T ss_pred HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc----
Confidence 2234667899999999999998 8999888744332 4678899999999998885544 4568886643222
Q ss_pred ccccchhccccCCCCccceEEEEEcCCC----CcH----HHHHHHHHhC---------CCCeEEEEcCchhHHHHHHHHh
Q 026925 145 HVSASSQQLASSKTPLGLHLEYLECEPD----EKP----SQLVDLLIKN---------KSKKIIIYFMTCACVDYWGVVL 207 (230)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~k~----~~l~~ll~~~---------~~~~~lIF~~t~~~~~~l~~~L 207 (230)
-..+.|+.+.-. +-. +.-..-|.++ -.+-.||||.|++.||+++-.|
T Consensus 212 ----------------FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l 275 (641)
T KOG0352|consen 212 ----------------FRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIML 275 (641)
T ss_pred ----------------hhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHh
Confidence 223333332211 112 2222222211 2246799999999999999999
Q ss_pred hhhhccCCceEEeccCCCCCCC
Q 026925 208 PRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 208 ~~~~~~~g~~~~~lh~~~~~~e 229 (230)
... |+++..+|.|+...|
T Consensus 276 ~~~----Gi~A~AYHAGLK~~E 293 (641)
T KOG0352|consen 276 EIA----GIPAMAYHAGLKKKE 293 (641)
T ss_pred hhc----CcchHHHhcccccch
Confidence 988 999999999998765
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=110.44 Aligned_cols=204 Identities=17% Similarity=0.173 Sum_probs=146.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHH--hcCCcEEEEcChHHHHH---Hhh-CCc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIE--EEGANLLIGTPGRLYDI---MER-MDV 71 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~--~~~~~Iiv~TP~~l~~~---l~~-~~~ 71 (230)
++||++|.-.|.....-+++++ ++....+...+++++... .+. .+...+|..||+++... +.. .+.
T Consensus 136 ~alvi~plislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka 210 (695)
T KOG0353|consen 136 FALVICPLISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKA 210 (695)
T ss_pred ceEeechhHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHH
Confidence 5799999777776655555555 677777877777653322 221 24578999999998652 221 245
Q ss_pred ccCCcccEEEEeccccccccc--cHHHHHH--HHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccc
Q 026925 72 LDFRNLEILVLDEADRLLDMG--FQKQISY--IISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVS 147 (230)
Q Consensus 72 ~~~~~l~~lVvDEad~l~~~~--~~~~~~~--i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 147 (230)
+....+..+-+||+|+-..|| |++++.. |+++..+...+++++||.+.++..-++..+.-....++...
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~------- 283 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG------- 283 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc-------
Confidence 667888999999999999997 7887765 45666678889999999999988877776553333333333
Q ss_pred cchhccccCCCCccceEEEEEcCC--CCcHHHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 148 ASSQQLASSKTPLGLHLEYLECEP--DEKPSQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 148 ~~~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
...+++...+..-+. ++-++-+..+++ ...++..||||-++++|+.++..|++. |+.+..+|..
T Consensus 284 ---------fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~----gi~a~~yha~ 350 (695)
T KOG0353|consen 284 ---------FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH----GIHAGAYHAN 350 (695)
T ss_pred ---------cCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc----Cccccccccc
Confidence 234555554444332 234455666665 447889999999999999999999999 9999999999
Q ss_pred CCCCC
Q 026925 225 MKQVG 229 (230)
Q Consensus 225 ~~~~e 229 (230)
|.++.
T Consensus 351 lep~d 355 (695)
T KOG0353|consen 351 LEPED 355 (695)
T ss_pred cCccc
Confidence 98764
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=100.41 Aligned_cols=135 Identities=37% Similarity=0.592 Sum_probs=107.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||+.++.|+.+.+..+.... ........++....+....+..+..+++++||+.+...+.. ......+++++|
T Consensus 57 ~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~-~~~~~~~~~~iI 134 (201)
T smart00487 57 VLVLVPTRELAEQWAEELKKLGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEN-DLLELSNVDLVI 134 (201)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHc-CCcCHhHCCEEE
Confidence 6899999999999999999887553 22334444554444555555333349999999999999887 556788899999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEe
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~ 138 (230)
+||+|.+....+...+..++..++...+++++|||.++........++.+...+...
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 999999987678888899998888889999999999999999999888866665543
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=117.48 Aligned_cols=116 Identities=26% Similarity=0.252 Sum_probs=98.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++.+|.|+|.+|.+..+....... .-.+++++|+.+. +..+.++|+|-|-|..|+.. +...+..+..+|
T Consensus 165 viYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~I--------N~~A~clvMTTEILRnMlyr-g~~~~~~i~~Vi 234 (1041)
T COG4581 165 VIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSI--------NPDAPCLVMTTEILRNMLYR-GSESLRDIEWVV 234 (1041)
T ss_pred eEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceee--------CCCCceEEeeHHHHHHHhcc-CcccccccceEE
Confidence 5789999999999998887765432 1245777887665 67788999999999999998 888899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~ 128 (230)
+||+|.|-+...+..++.++-.+|...+++++|||+++. .++..+.
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~-~EF~~Wi 280 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNA-EEFAEWI 280 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCH-HHHHHHH
Confidence 999999999888999999999999999999999999975 5555554
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=118.96 Aligned_cols=205 Identities=12% Similarity=0.058 Sum_probs=115.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-------CcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-------DVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-------~~~~~ 74 (230)
+|||||+.+|+.|+.+.+.+++.. +...+..+.|+... .. ....+|+|+|++.+.....++ ..+.-
T Consensus 301 tLILvps~~Lv~QW~~ef~~~~~l-~~~~I~~~tg~~k~-----~~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~ 373 (732)
T TIGR00603 301 CLVLCTSAVSVEQWKQQFKMWSTI-DDSQICRFTSDAKE-----RF-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN 373 (732)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCC-CCceEEEEecCccc-----cc-ccCCcEEEEEHHHhhcccccchhhhHHHHHhcc
Confidence 689999999999999999998633 24566666664321 11 234789999998765322110 11223
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchH--HHHHHHhccCCCeEEEEec--cCcccccccch
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRA--ESKSHHVSASS 150 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~--~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~ 150 (230)
..++++|+||+|++.+.. +..++..+. ....+++|||...+ ....+..++ .|......- -...+.+..-.
T Consensus 374 ~~~gLII~DEvH~lpA~~----fr~il~~l~-a~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~ 447 (732)
T TIGR00603 374 REWGLILLDEVHVVPAAM----FRRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQ 447 (732)
T ss_pred ccCCEEEEEccccccHHH----HHHHHHhcC-cCcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccce
Confidence 567899999999985544 444565564 44568999997522 111122222 222211111 00001110000
Q ss_pred ----------hccccCCCC-ccceEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCce
Q 026925 151 ----------QQLASSKTP-LGLHLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS 217 (230)
Q Consensus 151 ----------~~~~~~~~~-~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~ 217 (230)
..+.+.... ..... ........|...+..+++.+ .++++||||++...++.++..| +
T Consensus 448 ~~ev~v~~t~~~~~~yl~~~~~~k~-~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-------~-- 517 (732)
T TIGR00603 448 CAEVWCPMTPEFYREYLRENSRKRM-LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-------G-- 517 (732)
T ss_pred EEEEEecCCHHHHHHHHHhcchhhh-HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-------C--
Confidence 000000000 00000 11112345777777788755 6789999999999988888876 2
Q ss_pred EEeccCCCCCCC
Q 026925 218 LIPLHGKMKQVG 229 (230)
Q Consensus 218 ~~~lh~~~~~~e 229 (230)
+..+||++++.|
T Consensus 518 ~~~I~G~ts~~E 529 (732)
T TIGR00603 518 KPFIYGPTSQQE 529 (732)
T ss_pred CceEECCCCHHH
Confidence 245899998754
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=116.60 Aligned_cols=113 Identities=25% Similarity=0.241 Sum_probs=94.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++=+|-++|.+|-++.++...+. +..++|+.+. +..+..+|+|-|-|..|+.+ +.--.+++..+|
T Consensus 343 ~iYTSPIKALSNQKfRDFk~tF~D-----vgLlTGDvqi--------nPeAsCLIMTTEILRsMLYr-gadliRDvE~VI 408 (1248)
T KOG0947|consen 343 TIYTSPIKALSNQKFRDFKETFGD-----VGLLTGDVQI--------NPEASCLIMTTEILRSMLYR-GADLIRDVEFVI 408 (1248)
T ss_pred eEecchhhhhccchHHHHHHhccc-----cceeecceee--------CCCcceEeehHHHHHHHHhc-ccchhhccceEE
Confidence 577889999999988888776433 2378887654 45578999999999999998 777789999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~ 129 (230)
+||+|.+.+...+..++.++=++|++.++|++|||.|+. .+++.+..
T Consensus 409 FDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~-~EFA~WIG 455 (1248)
T KOG0947|consen 409 FDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNT-LEFADWIG 455 (1248)
T ss_pred EeeeeecccccccccceeeeeeccccceEEEEeccCCCh-HHHHHHhh
Confidence 999999999988888999999999999999999999975 66666543
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=117.19 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=70.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCCcccC-----C
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDF-----R 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~~~~~-----~ 75 (230)
|.|++||.+||.|...++..+...+ |+++.++.++.+..+... .-+|||++|||..| .++++.+-.+.. +
T Consensus 126 VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~~i~~~~~~~~r~~---~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr 201 (908)
T PRK13107 126 VHVITVNDYLARRDAENNRPLFEFL-GLTVGINVAGLGQQEKKA---AYNADITYGTNNEFGFDYLRDNMAFSPQERVQR 201 (908)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEecCCCCHHHHHh---cCCCCeEEeCCCcccchhhhccCccchhhhhcc
Confidence 6899999999999999999999988 999999988877543322 23699999999999 888876213333 7
Q ss_pred cccEEEEeccccccc
Q 026925 76 NLEILVLDEADRLLD 90 (230)
Q Consensus 76 ~l~~lVvDEad~l~~ 90 (230)
.+.+.||||+|.++-
T Consensus 202 ~~~~aIvDEvDsiLi 216 (908)
T PRK13107 202 PLHYALIDEVDSILI 216 (908)
T ss_pred ccceeeecchhhhcc
Confidence 889999999999973
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-11 Score=103.73 Aligned_cols=216 Identities=17% Similarity=0.212 Sum_probs=147.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCc----eEEEEEc--------------CcchHHHHHHHHhc-------------
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDV----KSVLLVG--------------GVEVKADVKKIEEE------------- 50 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~----~v~~~~~--------------~~~~~~~~~~l~~~------------- 50 (230)
+|||+|+|.-|.++-+.+.+++.....+ +...-.| ...++++...+..+
T Consensus 40 VLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGik~t 119 (442)
T PF06862_consen 40 VLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGIKFT 119 (442)
T ss_pred EEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeEEEe
Confidence 7999999999999998888886541000 0000001 11222333333221
Q ss_pred -----------CCcEEEEcChHHHHHHhh----CCccc-CCcccEEEEecccccc--ccccHHHHHHHHHhCCCC-----
Q 026925 51 -----------GANLLIGTPGRLYDIMER----MDVLD-FRNLEILVLDEADRLL--DMGFQKQISYIISRLPKL----- 107 (230)
Q Consensus 51 -----------~~~Iiv~TP~~l~~~l~~----~~~~~-~~~l~~lVvDEad~l~--~~~~~~~~~~i~~~l~~~----- 107 (230)
++||||++|--|...+.. ....+ ++++.++|+|.||.|+ +|.+...+...+...|.+
T Consensus 120 rk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~D 199 (442)
T PF06862_consen 120 RKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTD 199 (442)
T ss_pred cCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCC
Confidence 389999999999888873 12233 8999999999999887 455555555555555532
Q ss_pred ----------------CcEEEEeecCchHHHHHHHhccCCCe-EEEEeccCcccccccchhccccCCCCccceEEEEEcC
Q 026925 108 ----------------RRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECE 170 (230)
Q Consensus 108 ----------------~q~i~~SAt~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 170 (230)
+|++++|+..++++..+.+..+.|.. .+.+...... ...-......+.|.|...+
T Consensus 200 fsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~--------~g~i~~v~~~v~Q~F~r~~ 271 (442)
T PF06862_consen 200 FSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA--------SGVISQVVVQVRQVFQRFD 271 (442)
T ss_pred HHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc--------ceeeeccccCCceEEEEec
Confidence 69999999999999999999777654 4554444211 0001345567788888765
Q ss_pred CCC-------cH----HHHHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 171 PDE-------KP----SQLVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 171 ~~~-------k~----~~l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+ +. ..++.-+. ......+|||++|.-+--++.++|.+. ++.+..+|...++++
T Consensus 272 ~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~----~~sF~~i~EYts~~~ 338 (442)
T PF06862_consen 272 CSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE----NISFVQISEYTSNSD 338 (442)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc----CCeEEEecccCCHHH
Confidence 432 22 33445555 567789999999999999999999987 999999999887764
|
; GO: 0005634 nucleus |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=111.52 Aligned_cols=205 Identities=15% Similarity=0.162 Sum_probs=114.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||||||++|+.|+.+.+.+.... +-.++.+.|+.... .+..|.|+|-+.+...-.. ..+...+..++|
T Consensus 83 ~Lvlv~~~~L~~Qw~~~~~~~~~~--~~~~g~~~~~~~~~--------~~~~i~vat~qtl~~~~~l-~~~~~~~~~liI 151 (442)
T COG1061 83 TLVLVPTKELLDQWAEALKKFLLL--NDEIGIYGGGEKEL--------EPAKVTVATVQTLARRQLL-DEFLGNEFGLII 151 (442)
T ss_pred EEEEECcHHHHHHHHHHHHHhcCC--ccccceecCceecc--------CCCcEEEEEhHHHhhhhhh-hhhcccccCEEE
Confidence 699999999999998766666422 12344444443221 1146999999998774211 234445789999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHH--------------------HHHHH-hccCCCeEEEEecc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV--------------------EELSK-AGLRNPVRVEVRAE 140 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~--------------------~~~~~-~~~~~~~~i~~~~~ 140 (230)
+||+|++.+..|......+.... .++++|||.+..- ..+.. .++..+..+.+...
T Consensus 152 ~DE~Hh~~a~~~~~~~~~~~~~~----~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~ 227 (442)
T COG1061 152 FDEVHHLPAPSYRRILELLSAAY----PRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVT 227 (442)
T ss_pred EEccccCCcHHHHHHHHhhhccc----ceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEec
Confidence 99999998776665433333222 2899999965221 11111 11112211111111
Q ss_pred CcccccccchhccccCCCCcc-----------ceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhh
Q 026925 141 SKSHHVSASSQQLASSKTPLG-----------LHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLP 208 (230)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~ 208 (230)
............ ...... -...........+...+..++..+ ...+++|||.++.+++.++..|.
T Consensus 228 ~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~ 304 (442)
T COG1061 228 LTEDEEREYAKE---SARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFL 304 (442)
T ss_pred cchHHHHHhhhh---hhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhc
Confidence 000000000000 000000 000011111233445555566555 57799999999999999999999
Q ss_pred hhhccCCceEEeccCCCCCCC
Q 026925 209 RLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 209 ~~~~~~g~~~~~lh~~~~~~e 229 (230)
.. |. +..+.|+.+++|
T Consensus 305 ~~----~~-~~~it~~t~~~e 320 (442)
T COG1061 305 AP----GI-VEAITGETPKEE 320 (442)
T ss_pred CC----Cc-eEEEECCCCHHH
Confidence 87 67 888999888764
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=109.95 Aligned_cols=193 Identities=21% Similarity=0.243 Sum_probs=126.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEE-EEcCcch---HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVL-LVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~-~~~~~~~---~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
++||+||..|+.|+++.+++++.......+.. .++..+. ++....+.++..||+|+|.+-+..-.+. +.-.++
T Consensus 128 ~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~---L~~~kF 204 (1187)
T COG1110 128 VYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE---LSKLKF 204 (1187)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH---hcccCC
Confidence 68999999999999999999987552133333 4444333 3444566677899999999877766654 222468
Q ss_pred cEEEEeccccccccc-----------cHHH-H------HHHHHhC------------------------CCCCcEEEEee
Q 026925 78 EILVLDEADRLLDMG-----------FQKQ-I------SYIISRL------------------------PKLRRTGLFSA 115 (230)
Q Consensus 78 ~~lVvDEad~l~~~~-----------~~~~-~------~~i~~~l------------------------~~~~q~i~~SA 115 (230)
+++.+|++|.++..+ |-+. + ..+...+ .+..+++..||
T Consensus 205 dfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSA 284 (1187)
T COG1110 205 DFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSA 284 (1187)
T ss_pred CEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeec
Confidence 899999999998643 2111 0 1111111 12357899999
Q ss_pred cCchHH--HHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEE
Q 026925 116 TQTEAV--EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIY 193 (230)
Q Consensus 116 t~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF 193 (230)
|..+.- ..+.+..++ ..++.. .....|+...+... +-...+..++++.+. =.|||
T Consensus 285 Tg~~rg~R~~LfReLlg----FevG~~---------------~~~LRNIvD~y~~~---~~~e~~~elvk~lG~-GgLIf 341 (1187)
T COG1110 285 TGKPRGSRLKLFRELLG----FEVGSG---------------GEGLRNIVDIYVES---ESLEKVVELVKKLGD-GGLIF 341 (1187)
T ss_pred cCCCCCchHHHHHHHhC----CccCcc---------------chhhhheeeeeccC---ccHHHHHHHHHHhCC-CeEEE
Confidence 986532 122222222 122222 34556777666665 444555556665554 47999
Q ss_pred cCc---hhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 194 FMT---CACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 194 ~~t---~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
++. ++.|++++.+|..+ |+++..+|++
T Consensus 342 V~~d~G~e~aeel~e~Lr~~----Gi~a~~~~a~ 371 (1187)
T COG1110 342 VPIDYGREKAEELAEYLRSH----GINAELIHAE 371 (1187)
T ss_pred EEcHHhHHHHHHHHHHHHhc----CceEEEeecc
Confidence 999 99999999999999 9999999986
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.5e-12 Score=108.68 Aligned_cols=177 Identities=19% Similarity=0.242 Sum_probs=130.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++=+|-++|.+|-++.+.. .|. -|++.+|+... +-.+--+|+|-|-|..|+.+ +.--.+.+.-+|
T Consensus 175 VIYTSPIKALSNQKYREl~~---EF~--DVGLMTGDVTI--------nP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVI 240 (1041)
T KOG0948|consen 175 VIYTSPIKALSNQKYRELLE---EFK--DVGLMTGDVTI--------NPDASCLVMTTEILRSMLYR-GSEVMREVAWVI 240 (1041)
T ss_pred EEeeChhhhhcchhHHHHHH---Hhc--ccceeecceee--------CCCCceeeeHHHHHHHHHhc-cchHhheeeeEE
Confidence 67888999999997776654 332 45666776554 34456889999999999998 877889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC---CCeEEEEeccCcccccccchhccccCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR---NPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
+||+|.|=+...+-.++.-+=.+|.+.+.+++|||+|+. .+++++... .|..+.-. +..
T Consensus 241 FDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYT-----------------dyR 302 (1041)
T KOG0948|consen 241 FDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYT-----------------DYR 302 (1041)
T ss_pred eeeehhccccccceeeeeeEEeccccceEEEEeccCCCH-HHHHHHHHHHhcCCceEEee-----------------cCC
Confidence 999999998877776666666789999999999999974 777776432 55443322 346
Q ss_pred CccceEEEEEcCCC--------------C--------------------------------------cHHHHHHHHHhCC
Q 026925 159 PLGLHLEYLECEPD--------------E--------------------------------------KPSQLVDLLIKNK 186 (230)
Q Consensus 159 ~~~i~~~~~~~~~~--------------~--------------------------------------k~~~l~~ll~~~~ 186 (230)
|..++|+.+..... + -+..+...+-...
T Consensus 303 PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~ 382 (1041)
T KOG0948|consen 303 PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERN 382 (1041)
T ss_pred CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhc
Confidence 77788876664410 0 0112233333456
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhh
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
..|+|||+-++++||.+|..+.++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kl 406 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKL 406 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccC
Confidence 679999999999999999999876
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.4e-12 Score=113.59 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=73.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCCcccCC-----
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDFR----- 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~~~~~~----- 75 (230)
++||+||++||.|+..++..+...+ ++++..+.||.+..++...+ +|||+||||++| .++++. +.+.++
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd-~~~~~~~~~~v 212 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRD-NSIATRKEEQV 212 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhC-CCCCcCHHHhh
Confidence 6899999999999999999999887 89999999999888776554 599999999999 999987 656655
Q ss_pred --cccEEEEecccccc
Q 026925 76 --NLEILVLDEADRLL 89 (230)
Q Consensus 76 --~l~~lVvDEad~l~ 89 (230)
.+.++||||||.|+
T Consensus 213 qr~~~~~IIDEADsmL 228 (970)
T PRK12899 213 GRGFYFAIIDEVDSIL 228 (970)
T ss_pred cccccEEEEechhhhh
Confidence 45899999999997
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=7e-11 Score=85.11 Aligned_cols=112 Identities=38% Similarity=0.609 Sum_probs=83.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|++.++.|....+...... +..+..+.++.......... ..+.+|+++|++.+...+.. ........+++|
T Consensus 33 ~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~ii 108 (144)
T cd00046 33 VLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL-SGKTDIVVGTPGRLLDELER-LKLSLKKLDLLI 108 (144)
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh-cCCCCEEEECcHHHHHHHHc-CCcchhcCCEEE
Confidence 689999999999999999988753 46677777766554444333 57899999999999888776 445567889999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+||+|.+....+...............+++++|||.
T Consensus 109 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 109 LDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred EeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 999999876654443222334445678899999994
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-11 Score=108.75 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 172 DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 172 ~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..|...+.++++....+|+||||+++..|..++..|.... |+++..+||+|++.|
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~---Gi~~~~ihG~~s~~e 532 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRERE---GIRAAVFHEGMSIIE 532 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc---CeeEEEEECCCCHHH
Confidence 3477788899988888999999999999999999995433 999999999999754
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.6e-09 Score=83.60 Aligned_cols=187 Identities=19% Similarity=0.199 Sum_probs=121.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+.|.+|--+.|.+++..++... ++..+..++|+++.. ...+++|+|-..++++-+. ++++|
T Consensus 147 vciASPRvDVclEl~~Rlk~aF---~~~~I~~Lyg~S~~~--------fr~plvVaTtHQLlrFk~a--------FD~li 207 (441)
T COG4098 147 VCIASPRVDVCLELYPRLKQAF---SNCDIDLLYGDSDSY--------FRAPLVVATTHQLLRFKQA--------FDLLI 207 (441)
T ss_pred EEEecCcccchHHHHHHHHHhh---ccCCeeeEecCCchh--------ccccEEEEehHHHHHHHhh--------ccEEE
Confidence 3567888899999888888764 356788889887642 3367888888777665543 55999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
|||+|.+.-..-...-....+......-+|.+|||.++.++.-.... +-..+.+.... +..|-.
T Consensus 208 IDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~Rf--------------H~~pLp 271 (441)
T COG4098 208 IDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARF--------------HGKPLP 271 (441)
T ss_pred EeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhh--------------cCCCCC
Confidence 99999875332222223334445567788999999987666555432 33334443331 223333
Q ss_pred ceEEEEEcCCC------CcH-HHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 162 LHLEYLECEPD------EKP-SQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 162 i~~~~~~~~~~------~k~-~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.. |+.+..- .|+ ..+...|+++ .+.|++||+++.+..++++..|++.+ +....+++|+.-.
T Consensus 272 vPk-f~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~--~~~~i~~Vhs~d~ 342 (441)
T COG4098 272 VPK-FVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL--PKETIASVHSEDQ 342 (441)
T ss_pred CCc-eEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC--CccceeeeeccCc
Confidence 332 3333322 223 3666777655 55899999999999999999997763 3445688887643
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=101.19 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=72.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC----CcccCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~----~~~~~~~l 77 (230)
+|+|||+++|+.|..+.+..+.... ...+..+.+.... ..........|+|+|.+++...+... ..+.+.+.
T Consensus 466 VLfLvDR~~L~~Qa~~~F~~~~~~~-~~~~~~i~~i~~L---~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~f 541 (1123)
T PRK11448 466 ILFLVDRSALGEQAEDAFKDTKIEG-DQTFASIYDIKGL---EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQY 541 (1123)
T ss_pred EEEEecHHHHHHHHHHHHHhccccc-ccchhhhhchhhh---hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcc
Confidence 6899999999999999998874221 1111111111100 11111345789999999987764321 12457888
Q ss_pred cEEEEecccccccc---------------ccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 78 EILVLDEADRLLDM---------------GFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 78 ~~lVvDEad~l~~~---------------~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
++||+||||+-... .+...++.++.++. .-.++||||...
T Consensus 542 dlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r 596 (1123)
T PRK11448 542 DCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPAL 596 (1123)
T ss_pred cEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCcc
Confidence 99999999996421 12456777888763 467999999753
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=98.11 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=65.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~ 74 (230)
.+-|++||--||.|-+.++.++...+ |++++.+.++.+..+.... -.+||+.||...+- ++++.+ ...-.
T Consensus 123 ~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl~vg~i~~~~~~~~r~~~---y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~ 198 (796)
T PRK12906 123 GVHVVTVNEYLSSRDATEMGELYRWL-GLTVGLNLNSMSPDEKRAA---YNCDITYSTNSELGFDYLRDNMVVYKEQMVQ 198 (796)
T ss_pred CeEEEeccHHHHHhhHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHH---hcCCCeecCCccccccchhhccccchhhhhc
Confidence 36799999999999999999999998 9999999887666554433 35899999998863 234331 11124
Q ss_pred CcccEEEEecccccc
Q 026925 75 RNLEILVLDEADRLL 89 (230)
Q Consensus 75 ~~l~~lVvDEad~l~ 89 (230)
+.+.+.||||+|.++
T Consensus 199 r~~~~aIvDEvDSiL 213 (796)
T PRK12906 199 RPLNYAIVDEVDSIL 213 (796)
T ss_pred cCcceeeeccchhee
Confidence 578899999999886
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=96.25 Aligned_cols=120 Identities=14% Similarity=0.212 Sum_probs=86.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCccc-CCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~-~~~l~~l 80 (230)
+|+++||+-|+.|..+.+...+.+ ..+....||.........+ -...+|+|.||+.+...++. +..+ ++++.++
T Consensus 109 iVF~aP~~pLv~QQ~a~~~~~~~~---~~~T~~l~~~~~~~~r~~i-~~s~~vff~TpQil~ndL~~-~~~~~ls~fs~i 183 (746)
T KOG0354|consen 109 VVFLAPTRPLVNQQIACFSIYLIP---YSVTGQLGDTVPRSNRGEI-VASKRVFFRTPQILENDLKS-GLHDELSDFSLI 183 (746)
T ss_pred EEEeeCCchHHHHHHHHHhhccCc---ccceeeccCccCCCchhhh-hcccceEEeChHhhhhhccc-ccccccceEEEE
Confidence 689999999999988766666533 3555555553333222233 25689999999999999887 4444 6999999
Q ss_pred EEecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 81 VLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 81 VvDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
||||||+-... .|...++..+..-....|++++|||.....+...+
T Consensus 184 v~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~ 230 (746)
T KOG0354|consen 184 VFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQN 230 (746)
T ss_pred EEcccccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHHHHH
Confidence 99999998755 36666656665555566999999998865554443
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=92.29 Aligned_cols=211 Identities=15% Similarity=0.089 Sum_probs=117.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH-------------HHHhcCCcEEEEcChHHHHHHhh
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK-------------KIEEEGANLLIGTPGRLYDIMER 68 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~-------------~l~~~~~~Iiv~TP~~l~~~l~~ 68 (230)
.+.+.|++.+++++++.+++..... .+.....++......... .....-..+.++||.........
T Consensus 249 ~i~vlP~~t~ie~~~~r~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~ 327 (733)
T COG1203 249 VIYVLPFRTIIEDMYRRAKEIFGLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVK 327 (733)
T ss_pred EEEEccHHHHHHHHHHHHHhhhccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhcc
Confidence 5789999999999999999876543 222221233222111100 00011234555555554442111
Q ss_pred CCccc-C--CcccEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCccc
Q 026925 69 MDVLD-F--RNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSH 144 (230)
Q Consensus 69 ~~~~~-~--~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 144 (230)
...+. + -....+|+||+|.+.+......+..++..+. ....++++|||+|+...+.....+.....+........
T Consensus 328 ~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~- 406 (733)
T COG1203 328 GFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCP- 406 (733)
T ss_pred ccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccc-
Confidence 01111 1 2346799999998766533444444444443 36788999999999999988888776655443211000
Q ss_pred ccccchhccccCCCCccceEEEEEcCCCCcHHHHHH-HHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccC
Q 026925 145 HVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD-LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHG 223 (230)
Q Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~-ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~ 223 (230)
. ..-+..................... ......+++++|-|||+..|.+++..|+.. +.++..+||
T Consensus 407 -------~---~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----~~~v~LlHS 472 (733)
T COG1203 407 -------K---EDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK----GPKVLLLHS 472 (733)
T ss_pred -------c---ccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc----CCCEEEEec
Confidence 0 0000000000000000000011111 112346789999999999999999999998 558999999
Q ss_pred CCCCC
Q 026925 224 KMKQV 228 (230)
Q Consensus 224 ~~~~~ 228 (230)
.+...
T Consensus 473 Rf~~~ 477 (733)
T COG1203 473 RFTLK 477 (733)
T ss_pred ccchh
Confidence 98753
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.3e-09 Score=93.56 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=79.0
Q ss_pred EEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCcccCCcccEEEE
Q 026925 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLEILVL 82 (230)
Q Consensus 4 il~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~lVv 82 (230)
.+.|--.-++.-...+..+.... |+.+-...|..++.... +.-++-|+|-|+-+.++.. -..-++..++++||
T Consensus 274 lilp~vsiv~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~~-----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvV 347 (1008)
T KOG0950|consen 274 LILPYVSIVQEKISALSPFSIDL-GFPVEEYAGRFPPEKRR-----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVV 347 (1008)
T ss_pred EecceeehhHHHHhhhhhhcccc-CCcchhhcccCCCCCcc-----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEE
Confidence 33343334444444555555555 67776666666554332 3457999999997666543 12235778999999
Q ss_pred eccccccccccHHHHHHHHHhC---C--CCCcEEEEeecCchHHHHHHHhccC
Q 026925 83 DEADRLLDMGFQKQISYIISRL---P--KLRRTGLFSATQTEAVEELSKAGLR 130 (230)
Q Consensus 83 DEad~l~~~~~~~~~~~i~~~l---~--~~~q~i~~SAt~~~~~~~~~~~~~~ 130 (230)
||.|.+.+.+.+..++.++..+ . ...|+|++|||+++ ..++..|+.
T Consensus 348 dElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~ 398 (1008)
T KOG0950|consen 348 DELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPN--NSLLQDWLD 398 (1008)
T ss_pred eeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCC--hHHHHHHhh
Confidence 9999999998888888877554 2 23579999999997 455555555
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-07 Score=87.27 Aligned_cols=106 Identities=15% Similarity=0.189 Sum_probs=69.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH--HHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~--~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
.|||||.. +..|+.+.+.+++ |.+++..+.|......... .+..++++|+|+|++.+..... .+.--+.++
T Consensus 222 ~LIVvP~S-lL~nW~~Ei~kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~---~L~k~~W~~ 294 (1033)
T PLN03142 222 HMVVAPKS-TLGNWMNEIRRFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT---ALKRFSWRY 294 (1033)
T ss_pred EEEEeChH-HHHHHHHHHHHHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH---HhccCCCCE
Confidence 58999965 5567888888875 4567777777654322211 1223578999999998765432 233345789
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+|+||||++-+.. ......+..+... ..+++|+|.
T Consensus 295 VIvDEAHrIKN~~--Sklskalr~L~a~-~RLLLTGTP 329 (1033)
T PLN03142 295 IIIDEAHRIKNEN--SLLSKTMRLFSTN-YRLLITGTP 329 (1033)
T ss_pred EEEcCccccCCHH--HHHHHHHHHhhcC-cEEEEecCC
Confidence 9999999986542 3344455556433 456778994
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.7e-07 Score=82.69 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=122.1
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVv 82 (230)
.+.-|-|--|.-+...+..-...-+|-.|+.-....+.. +..-.|-++|.+.|++.+.. ...++.++++|+
T Consensus 98 ~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~-------s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIi 168 (845)
T COG1643 98 GCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV-------SPRTRIKVMTDGILLREIQN--DPLLSGYSVVII 168 (845)
T ss_pred EecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccC-------CCCceeEEeccHHHHHHHhh--CcccccCCEEEE
Confidence 344566644444444444333222243444443322221 34567999999999999985 345899999999
Q ss_pred ecccccc-ccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 83 DEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 83 DEad~l~-~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
||+|.=. +.. -...+..++...+....+|.+|||+.. +.+.. ++.+.-.+.+... ..
T Consensus 169 DEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~--~rfs~-~f~~apvi~i~GR----------------~f-- 227 (845)
T COG1643 169 DEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA--ERFSA-YFGNAPVIEIEGR----------------TY-- 227 (845)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCH--HHHHH-HcCCCCEEEecCC----------------cc--
Confidence 9999632 222 233455667777778999999999985 44544 5555444444333 12
Q ss_pred cceEEEEEcC-CCC-cHHHHHHHHH---hCCCCeEEEEcCchhHHHHHHHHhhh-hhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECE-PDE-KPSQLVDLLI---KNKSKKIIIYFMTCACVDYWGVVLPR-LAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~-~~~-k~~~l~~ll~---~~~~~~~lIF~~t~~~~~~l~~~L~~-~~~~~g~~~~~lh~~~~~~e 229 (230)
.++-+|.... ..+ -.+.+...+. ..+.+.+|||.+-+++.+.++..|.+ .+ .....+.++||.|+.+|
T Consensus 228 PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l-~~~~~i~PLy~~L~~~e 301 (845)
T COG1643 228 PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAEL-GDDLEILPLYGALSAEE 301 (845)
T ss_pred ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccc-cCCcEEeeccccCCHHH
Confidence 2232332222 222 2233333333 44678999999999999999999998 22 13689999999999764
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-08 Score=87.40 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=70.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC----CcccCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~----~~~~~~~l 77 (230)
+|.|+-.+.|+.|.+..++.+... -.......+... ...++|-++|..++..-+... ..+....+
T Consensus 218 VLFLaDR~~Lv~QA~~af~~~~P~---~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~F 286 (875)
T COG4096 218 VLFLADRNALVDQAYGAFEDFLPF---GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFF 286 (875)
T ss_pred eeEEechHHHHHHHHHHHHHhCCC---ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCce
Confidence 688999999999999888887543 233322222211 134789999999988877652 24556779
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHH
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~ 121 (230)
++||+||||+ |.....+.|+.++....|.+ +||..+..
T Consensus 287 DlIvIDEaHR----gi~~~~~~I~dYFdA~~~gL--TATP~~~~ 324 (875)
T COG4096 287 DLIVIDEAHR----GIYSEWSSILDYFDAATQGL--TATPKETI 324 (875)
T ss_pred eEEEechhhh----hHHhhhHHHHHHHHHHHHhh--ccCccccc
Confidence 9999999998 45555567888885444333 78865533
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-07 Score=81.54 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=65.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCcccCCcc-cE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNL-EI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l-~~ 79 (230)
+|+|+|+.+|..|+.+.+..+.... .. +..+...-...+......|+|+|.+++...+.. ...+...+- .+
T Consensus 296 vl~lvdR~~L~~Q~~~~f~~~~~~~--~~-----~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 296 VFFVVDRRELDYQLMKEFQSLQKDC--AE-----RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred EEEEECcHHHHHHHHHHHHhhCCCC--Cc-----ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 6899999999999999999875321 11 111122222333334578999999999864432 011221111 28
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+|+||||+.-..++... +.+.+| +...++||||.-
T Consensus 369 vIvDEaHrs~~~~~~~~---l~~~~p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 369 VIFDEAHRSQYGELAKN---LKKALK-NASFFGFTGTPI 403 (667)
T ss_pred EEEEcCccccchHHHHH---HHhhCC-CCcEEEEeCCCc
Confidence 99999999754433332 224454 567899999974
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=71.39 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=68.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEE-----------EcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLL-----------VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~-----------~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~ 70 (230)
+++++|+..|+.|+.+.+..+.... ...... ..................+++++|.+++........
T Consensus 53 ~l~~~p~~~l~~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (184)
T PF04851_consen 53 VLIVAPNISLLEQWYDEFDDFGSEK--YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEK 130 (184)
T ss_dssp EEEEESSHHHHHHHHHHHHHHSTTS--EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--
T ss_pred eeEecCHHHHHHHHHHHHHHhhhhh--hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccc
Confidence 6899999999999999997765432 111110 001010111122224678999999999988875411
Q ss_pred ----------cccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 71 ----------VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 71 ----------~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
.......+++|+||||+..+..- ...++. .....++++|||..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 131 KIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp -------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred ccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 12345678999999999754431 344444 55777899999965
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.4e-08 Score=81.59 Aligned_cols=212 Identities=21% Similarity=0.259 Sum_probs=128.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEE--------EcC--------cchHHHHHHHHh----------------
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLL--------VGG--------VEVKADVKKIEE---------------- 49 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~--------~~~--------~~~~~~~~~l~~---------------- 49 (230)
+||+||+|+-|-.+-+.+..++.+.-+-+...+ ++| .+.+++.+.+..
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 799999999999999999988543311111111 111 112222222211
Q ss_pred --------cCCcEEEEcChHHHHHHhhC----Cccc-CCcccEEEEeccccccccccHHHHHHHHHhC---CCC------
Q 026925 50 --------EGANLLIGTPGRLYDIMERM----DVLD-FRNLEILVLDEADRLLDMGFQKQISYIISRL---PKL------ 107 (230)
Q Consensus 50 --------~~~~Iiv~TP~~l~~~l~~~----~~~~-~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l---~~~------ 107 (230)
...||||++|--|..++.+. ..++ ++++.++|||.||.++... -+++..|++++ |..
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCCh
Confidence 24899999999988878631 1233 7999999999999887543 23444555444 322
Q ss_pred ---------------CcEEEEeecCchHHHHHHHhccCCCe-EEEEeccCcccccccchhccccCCCCccceEEEEEc--
Q 026925 108 ---------------RRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLEC-- 169 (230)
Q Consensus 108 ---------------~q~i~~SAt~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 169 (230)
+|+++||+-..+....+...++.+.- .+........+ +. ....-.+.|.|..+
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~g----si-----~~v~~~l~Qvf~ri~~ 525 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGG----SI-----SNVGIPLCQVFQRIEV 525 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCC----ch-----hhccchhhhhhhheec
Confidence 48999999999989999988887653 44433331100 00 11111222222222
Q ss_pred CC-----CCcHHH----HHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 170 EP-----DEKPSQ----LVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 170 ~~-----~~k~~~----l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+. ..+... ++.-+.+....-+|||.++.-+-.++.+++.+. ++.+.-+|...++
T Consensus 526 ~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e----~i~F~~i~EYssk 588 (698)
T KOG2340|consen 526 KSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE----EISFVMINEYSSK 588 (698)
T ss_pred cCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh----hcchHHHhhhhhH
Confidence 21 122222 222233334556899999999999999999988 7777666654443
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-07 Score=67.20 Aligned_cols=103 Identities=10% Similarity=0.100 Sum_probs=63.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+|||.++..+.+.++.. ++++..-..+. .. .++.-|-++|.+.+...+-+ .....+.+++|
T Consensus 36 vLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~~-------~~-~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II 100 (148)
T PF07652_consen 36 VLVLAPTRVVAEEMYEALKGL-----PVRFHTNARMR-------TH-FGSSIIDVMCHATYGHFLLN--PCRLKNYDVII 100 (148)
T ss_dssp EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS------------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEE
T ss_pred EEEecccHHHHHHHHHHHhcC-----CcccCceeeec-------cc-cCCCcccccccHHHHHHhcC--cccccCccEEE
Confidence 699999999999877777643 34433111110 11 36667889999998887754 45578999999
Q ss_pred Eeccccccccc--cHHHHHHHHHhCCCCCcEEEEeecCchHH
Q 026925 82 LDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAV 121 (230)
Q Consensus 82 vDEad~l~~~~--~~~~~~~i~~~l~~~~q~i~~SAt~~~~~ 121 (230)
+||+|-.-... +...+.+.- .. ....+|++|||.|...
T Consensus 101 ~DEcH~~Dp~sIA~rg~l~~~~-~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 101 MDECHFTDPTSIAARGYLRELA-ES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ECTTT--SHHHHHHHHHHHHHH-HT-TS-EEEEEESS-TT--
T ss_pred EeccccCCHHHHhhheeHHHhh-hc-cCeeEEEEeCCCCCCC
Confidence 99999654332 333333332 22 3467999999988754
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-06 Score=76.64 Aligned_cols=97 Identities=21% Similarity=0.272 Sum_probs=64.3
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH--HHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV--KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~--~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
||++|-..|.+ ++..+.+..|+++++.+.|+....... ..+..++.||+|||.+....- . ..+.--+.+++
T Consensus 221 LVi~P~StL~N----W~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k-~~lk~~~W~yl 293 (971)
T KOG0385|consen 221 LVIAPKSTLDN----WMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--K-SFLKKFNWRYL 293 (971)
T ss_pred EEEeeHhhHHH----HHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--H-HHHhcCCceEE
Confidence 79999888765 445555556788999999986433222 123346899999999986443 1 33444667899
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLR 108 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~ 108 (230)
||||||++-+. ...+..+++.+....
T Consensus 294 vIDEaHRiKN~--~s~L~~~lr~f~~~n 319 (971)
T KOG0385|consen 294 VIDEAHRIKNE--KSKLSKILREFKTDN 319 (971)
T ss_pred Eechhhhhcch--hhHHHHHHHHhcccc
Confidence 99999999664 233345555554333
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-06 Score=76.07 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=65.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~~ 75 (230)
+-|++||--||.|-+.++.++...+ |+++..+.++.+..+....+ .|||..||...+- ++++.+ ...-.+
T Consensus 122 VhvvT~NdyLA~RDae~m~~ly~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R 197 (764)
T PRK12326 122 VHVITVNDYLARRDAEWMGPLYEAL-GLTVGWITEESTPEERRAAY---ACDVTYASVNEIGFDVLRDQLVTDVADLVSP 197 (764)
T ss_pred eEEEcCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCCCHHHHHHHH---cCCCEEcCCcccccccchhhhccChHhhcCC
Confidence 6789999999999999999999988 99999998887766544444 5899999998752 233320 112246
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.+.||||+|.++
T Consensus 198 ~~~faIVDEvDSiL 211 (764)
T PRK12326 198 NPDVAIIDEADSVL 211 (764)
T ss_pred ccceeeecchhhhe
Confidence 68899999999886
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.8e-06 Score=76.11 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=66.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~~~ 74 (230)
.+-|++||--||.|-+.++..+...+ |+++.++.++.+..+....+ .+||++||...+ -++|+.+ ...-.
T Consensus 125 ~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~~i~~~~~~~err~~Y---~~dI~YGT~~e~gFDYLrD~~~~~~~~~vq 200 (913)
T PRK13103 125 GVHVVTVNDYLARRDANWMRPLYEFL-GLSVGIVTPFQPPEEKRAAY---AADITYGTNNEFGFDYLRDNMAFSLDDKFQ 200 (913)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEEEECCCCCHHHHHHHh---cCCEEEEcccccccchhhccceechhhhcc
Confidence 36799999999999999999999888 99999998887766555444 389999999886 2233321 11124
Q ss_pred CcccEEEEecccccc
Q 026925 75 RNLEILVLDEADRLL 89 (230)
Q Consensus 75 ~~l~~lVvDEad~l~ 89 (230)
+.+.+.||||+|.++
T Consensus 201 r~l~~aIVDEvDsiL 215 (913)
T PRK13103 201 RELNFAVIDEVDSIL 215 (913)
T ss_pred cccceeEechhhhee
Confidence 889999999999986
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.9e-07 Score=81.01 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=77.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC--CcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~--~~~~~~~l~~ 79 (230)
+|+++||++|++|+...+....+.-.-.+...+.|....+.++. .-.|+|+|+-|+++-.++-.. ..-..+++++
T Consensus 559 VIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin---p~nCQVLITvPecleslLlspp~~q~~cerIRy 635 (1330)
T KOG0949|consen 559 VIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN---PWNCQVLITVPECLESLLLSPPHHQKFCERIRY 635 (1330)
T ss_pred EEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC---chhceEEEEchHHHHHHhcCchhhhhhhhcceE
Confidence 68899999999999877765542111123334445444333332 236999999999998887651 2234789999
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
+|+||+|.+-+..-.-.++.++... .+.++++|||+.+
T Consensus 636 iIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~LSATigN 673 (1330)
T KOG0949|consen 636 IIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLVLSATIGN 673 (1330)
T ss_pred EEechhhhccccccchHHHHHHHhc--CCCeeEEecccCC
Confidence 9999999886554444445555444 5778999999975
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=73.93 Aligned_cols=180 Identities=17% Similarity=0.310 Sum_probs=113.4
Q ss_pred eEEEeCChhhHHHHHHHH-HHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVA-QPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++++|..+.+...+..+ .+|... -|.+++.++|..+..-. + ....+|+|+||++...+ + ..+.+++.
T Consensus 1189 ~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk---l-~~~~~vii~tpe~~d~l-q-----~iQ~v~l~ 1257 (1674)
T KOG0951|consen 1189 AVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK---L-LQKGQVIISTPEQWDLL-Q-----SIQQVDLF 1257 (1674)
T ss_pred EEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH---H-hhhcceEEechhHHHHH-h-----hhhhcceE
Confidence 689999999996555444 444444 37888888887665322 2 24568999999997555 3 36889999
Q ss_pred EEeccccccccccHH------HHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccc
Q 026925 81 VLDEADRLLDMGFQK------QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLA 154 (230)
Q Consensus 81 VvDEad~l~~~~~~~------~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (230)
|.||+|.+-+. +++ .++.|.+.+-++.+++++|..+.+. +.+ .++.....+.+.++.
T Consensus 1258 i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~------------- 1320 (1674)
T KOG0951|consen 1258 IVDELHLIGGV-YGAVYEVICSMRYIASQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSV------------- 1320 (1674)
T ss_pred eeehhhhhccc-CCceEEEEeeHHHHHHHHHhheeEEEeehhhccc-hhh--ccccccceeecCccc-------------
Confidence 99999966532 221 1566677777889999999988753 444 344455555555441
Q ss_pred cCCCCccceEEEEEcCC-CCcH-HHHHH---HHH--hCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 155 SSKTPLGLHLEYLECEP-DEKP-SQLVD---LLI--KNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 155 ~~~~~~~i~~~~~~~~~-~~k~-~~l~~---ll~--~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
...|-.++-.-+.... ..++ .+... .+. ....++++||.++++.|..++..|...
T Consensus 1321 -R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~ 1382 (1674)
T KOG0951|consen 1321 -RPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTF 1382 (1674)
T ss_pred -CCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchh
Confidence 1222223222222221 1121 22222 222 236679999999999999998877654
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-05 Score=70.92 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=65.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~~ 75 (230)
|-|++++..||.+-+.++..+...+ |+.++...++.+..+....+ .+||+.||...+- ++++.+ ...-.+
T Consensus 120 VhVvT~NdyLA~RD~e~m~pvy~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r 195 (870)
T CHL00122 120 VHIVTVNDYLAKRDQEWMGQIYRFL-GLTVGLIQEGMSSEERKKNY---LKDITYVTNSELGFDYLRDNMALSLSDVVQR 195 (870)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHc-CCceeeeCCCCChHHHHHhc---CCCCEecCCccccccchhhccCcChHHhhcc
Confidence 5689999999999999999999998 99999988887766554444 4899999998653 333321 111246
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.+.||||+|.++
T Consensus 196 ~~~faIVDEvDSiL 209 (870)
T CHL00122 196 PFNYCIIDEVDSIL 209 (870)
T ss_pred ccceeeeecchhhe
Confidence 78899999999986
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.1e-05 Score=69.22 Aligned_cols=169 Identities=16% Similarity=0.248 Sum_probs=104.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+||||+|-..|--|+.+.++... +.++..++++-+..+... .+.++...|+|||=..+ + ..++++
T Consensus 247 qvLvLVPEI~Ltpq~~~rf~~rF----g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---F-----~Pf~~L 314 (730)
T COG1198 247 QVLVLVPEIALTPQLLARFKARF----GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL---F-----LPFKNL 314 (730)
T ss_pred EEEEEeccccchHHHHHHHHHHh----CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh---c-----Cchhhc
Confidence 58999999999999888888764 568888888766554444 44568899999986432 1 247889
Q ss_pred cEEEEeccccccc---cc---cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchh
Q 026925 78 EILVLDEADRLLD---MG---FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 78 ~~lVvDEad~l~~---~~---~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (230)
.+|||||=|--.= .+ +..++--... -..++.+++-|||.+ ++.+.+.--+....+.......
T Consensus 315 GLIIvDEEHD~sYKq~~~prYhARdvA~~Ra-~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~--------- 382 (730)
T COG1198 315 GLIIVDEEHDSSYKQEDGPRYHARDVAVLRA-KKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAG--------- 382 (730)
T ss_pred cEEEEeccccccccCCcCCCcCHHHHHHHHH-HHhCCCEEEecCCCC--HHHHHhhhcCceEEEEcccccc---------
Confidence 9999999997641 11 2222222222 235889999999955 5555554323333444433310
Q ss_pred ccccCCCCccceEEEEEcCC--CCcH----HHHHHHHHh--CCCCeEEEEcCchhH
Q 026925 152 QLASSKTPLGLHLEYLECEP--DEKP----SQLVDLLIK--NKSKKIIIYFMTCAC 199 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~--~~k~----~~l~~ll~~--~~~~~~lIF~~t~~~ 199 (230)
...+..+. ++.+.. .+.. ..+++.+++ ..++++|+|.|++--
T Consensus 383 ----~a~~p~v~--iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGy 432 (730)
T COG1198 383 ----RARLPRVE--IIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGY 432 (730)
T ss_pred ----ccCCCcce--EEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCc
Confidence 11122222 333322 2221 455555543 377899999998753
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.22 E-value=4e-06 Score=68.47 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=66.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh--CCcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER--MDVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~--~~~~~~~~l~~ 79 (230)
+||++|+ .+..|+..++.+++... ..++....++.......... ....+++++|.+.+...-.. ...+.--+.+.
T Consensus 61 ~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~ 137 (299)
T PF00176_consen 61 TLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKNQ-LPKYDVVITTYETLRKARKKKDKEDLKQIKWDR 137 (299)
T ss_dssp EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSSS-CCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEE
T ss_pred eeEeecc-chhhhhhhhhccccccc-cccccccccccccccccccc-cccceeeecccccccccccccccccccccccee
Confidence 6999999 77789999999987542 56777776665222221111 35689999999998711000 01122245889
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+|+||+|.+-+.. ......+..+. ....+++|||.
T Consensus 138 vIvDEaH~~k~~~--s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 138 VIVDEAHRLKNKD--SKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp EEETTGGGGTTTT--SHHHHHHHCCC-ECEEEEE-SS-
T ss_pred EEEeccccccccc--ccccccccccc-cceEEeecccc
Confidence 9999999884332 22233344454 66678889994
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.1e-05 Score=68.88 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=65.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-----HHHHhh-CCcccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-----YDIMER-MDVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-----~~~l~~-~~~~~~~ 75 (230)
|-|++++--||..=..++..+...+ |+.++...++.+..+.... -.|||++||+..+ .+.+.. ....-.+
T Consensus 129 VhVVTvNdYLA~RDae~m~~vy~~L-GLtvg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR 204 (939)
T PRK12902 129 VHVVTVNDYLARRDAEWMGQVHRFL-GLSVGLIQQDMSPEERKKN---YACDITYATNSELGFDYLRDNMATDISEVVQR 204 (939)
T ss_pred eEEEeCCHHHHHhHHHHHHHHHHHh-CCeEEEECCCCChHHHHHh---cCCCeEEecCCcccccchhhhhcccccccccC
Confidence 5689999999999999999999988 9999998877665544333 4699999999987 444432 1223357
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.+.||||+|.++
T Consensus 205 ~~~faIVDEvDSIL 218 (939)
T PRK12902 205 PFNYCVIDEVDSIL 218 (939)
T ss_pred ccceEEEeccccee
Confidence 88999999999986
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=98.13 E-value=5e-06 Score=65.86 Aligned_cols=82 Identities=24% Similarity=0.446 Sum_probs=66.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcC-cchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGG-VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+|||+.+-.-|..+.+.++.|... +..++.+.+- ...+++...+.+...+|.||||+|+..++.. +.+.++++.+|
T Consensus 129 ~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~l~~i 205 (252)
T PF14617_consen 129 VLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSNLKRI 205 (252)
T ss_pred EEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcccCeEE
Confidence 688888888888888888877422 3455555554 4677888888667899999999999999988 99999999999
Q ss_pred EEeccc
Q 026925 81 VLDEAD 86 (230)
Q Consensus 81 VvDEad 86 (230)
|+|--|
T Consensus 206 vlD~s~ 211 (252)
T PF14617_consen 206 VLDWSY 211 (252)
T ss_pred EEcCCc
Confidence 999754
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00042 Score=61.11 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=97.1
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccc-ccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~-~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
..-.|.+.|-+.|++-+-. .-.+++.+.+|+||||-=. .-+ ....++.|++.. ....+|.+|||+.. .....
T Consensus 139 ~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATlda---~kfS~ 212 (674)
T KOG0922|consen 139 KDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATLDA---EKFSE 212 (674)
T ss_pred CceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEeeeecH---HHHHH
Confidence 3456999999998886653 3457899999999999521 000 222333333333 35689999999983 34455
Q ss_pred ccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcH-H---HHHHHHHhCCCCeEEEEcCchhHHHHH
Q 026925 128 GLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKP-S---QLVDLLIKNKSKKIIIYFMTCACVDYW 203 (230)
Q Consensus 128 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~-~---~l~~ll~~~~~~~~lIF~~t~~~~~~l 203 (230)
||.+...+.+... .-.+...|..-+..+=+ + .+.++-...+.+-+|||-+.+++.+.+
T Consensus 213 yF~~a~i~~i~GR------------------~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 213 YFNNAPILTIPGR------------------TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred HhcCCceEeecCC------------------CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 6666555555443 12233334443332222 2 222222345667899999999999999
Q ss_pred HHHhhhhhccCCce----EEeccCCCCCCC
Q 026925 204 GVVLPRLAVLKSLS----LIPLHGKMKQVG 229 (230)
Q Consensus 204 ~~~L~~~~~~~g~~----~~~lh~~~~~~e 229 (230)
+..|.+.....+.. ..++||.|+.+|
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~ 304 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEE 304 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHH
Confidence 99998873222222 468999999765
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=62.59 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=71.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-------CcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-------DVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-------~~~~~ 74 (230)
+|||+.+.--+.|+..++..++.-- +-.++-.+++... ....++.|+|+|...+..-=+++ .-+.-
T Consensus 348 clvLcts~VSVeQWkqQfk~wsti~-d~~i~rFTsd~Ke------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~ 420 (776)
T KOG1123|consen 348 CLVLCTSAVSVEQWKQQFKQWSTIQ-DDQICRFTSDAKE------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG 420 (776)
T ss_pred EEEEecCccCHHHHHHHHHhhcccC-ccceEEeeccccc------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc
Confidence 6899999999999999999987543 3455555554321 11578899999997653311110 01224
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
....++++||+|.+.+.=|+..+.-+..+. .++++||+-.
T Consensus 421 ~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvR 460 (776)
T KOG1123|consen 421 REWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVR 460 (776)
T ss_pred CeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEee
Confidence 678899999999887766766555554444 3677899743
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00037 Score=63.11 Aligned_cols=114 Identities=9% Similarity=0.121 Sum_probs=76.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
++|||+|...|+.|+.+.++...+ +-.+..++++.+..+... .+.++...|+|||-..+. ..++++
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF--------aP~~~L 258 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF--------APVEDL 258 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE--------eccCCC
Confidence 489999999999999998887542 256788888877665554 344577899999986431 247889
Q ss_pred cEEEEecccccc-ccc--cHHHHHHH--HHhCCCCCcEEEEeecCchHHHHHH
Q 026925 78 EILVLDEADRLL-DMG--FQKQISYI--ISRLPKLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 78 ~~lVvDEad~l~-~~~--~~~~~~~i--~~~l~~~~q~i~~SAt~~~~~~~~~ 125 (230)
.+|||||=|.-. ..+ -..+.+.+ ++.-.....+++-|||.+-+.....
T Consensus 259 gLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 259 GLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 999999998653 211 11122222 2222357889999999775544443
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.001 Score=61.52 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=99.8
Q ss_pred CcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccc-ccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC
Q 026925 52 ANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (230)
Q Consensus 52 ~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~-~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~ 130 (230)
.-++++|-+-|++.+.. .-.+.++.++|+||+|-=- +..|.-.+.+.+-..++..++|++|||+. .+....|+.
T Consensus 265 t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~d---ae~fs~YF~ 339 (924)
T KOG0920|consen 265 TRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLD---AELFSDYFG 339 (924)
T ss_pred eeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecc---hHHHHHHhC
Confidence 56999999999998864 4457899999999999642 33344433333333346889999999988 344445565
Q ss_pred CCeEEEEeccCc-ccccc-cch-hccccCCCCccceEE------------EEEcCCCCcHHHHHHHHH----hCCCCeEE
Q 026925 131 NPVRVEVRAESK-SHHVS-ASS-QQLASSKTPLGLHLE------------YLECEPDEKPSQLVDLLI----KNKSKKII 191 (230)
Q Consensus 131 ~~~~i~~~~~~~-~~~~~-~~~-~~~~~~~~~~~i~~~------------~~~~~~~~k~~~l~~ll~----~~~~~~~l 191 (230)
+.-.+.+..... ..... ++. ... ......-.++ .....++...+.+..++. ....+.+|
T Consensus 340 ~~pvi~i~grtfpV~~~fLEDil~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaIL 417 (924)
T KOG0920|consen 340 GCPVITIPGRTFPVKEYFLEDILSKT--GYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAIL 417 (924)
T ss_pred CCceEeecCCCcchHHHHHHHHHHHh--cccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEE
Confidence 554444432211 00000 000 000 0000000000 111112234445555544 33567999
Q ss_pred EEcCchhHHHHHHHHhhhhhccC---CceEEeccCCCCCCC
Q 026925 192 IYFMTCACVDYWGVVLPRLAVLK---SLSLIPLHGKMKQVG 229 (230)
Q Consensus 192 IF~~t~~~~~~l~~~L~~~~~~~---g~~~~~lh~~~~~~e 229 (230)
||-+...+...+...|....... .+-+.++|+.|+..|
T Consensus 418 VFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~e 458 (924)
T KOG0920|consen 418 VFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEE 458 (924)
T ss_pred EEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHH
Confidence 99999999999999997532112 367889999998753
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00022 Score=61.45 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=81.0
Q ss_pred EcChHHHHHHhhCCcccCCcccEEEEecccccccc--c-cHHH---HHHHHHh---CC---------------CCCcEEE
Q 026925 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM--G-FQKQ---ISYIISR---LP---------------KLRRTGL 112 (230)
Q Consensus 57 ~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~--~-~~~~---~~~i~~~---l~---------------~~~q~i~ 112 (230)
-+|-+|.+++.. =-++++||-|..+.. | |..+ -+.+..+ +| ...|+++
T Consensus 320 e~P~tL~DYfp~--------d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~ 391 (663)
T COG0556 320 EPPYTLFDYFPD--------DFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIY 391 (663)
T ss_pred cCCCcHHHhCCc--------ceEEEEeccccchHhhhchhcccHHHHHHHHHhcCcCcccccCCCCCHHHHHHhcCCEEE
Confidence 467777776643 127999999988642 1 2222 2223222 22 1369999
Q ss_pred EeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeE
Q 026925 113 FSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKI 190 (230)
Q Consensus 113 ~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~ 190 (230)
+|||..+.-.+... -.-...+ +.+.+ ...+. +..-+....++-|+.-++. ..+.++
T Consensus 392 VSATPg~~E~e~s~--~~vveQi-IRPTG---------------LlDP~----ievRp~~~QvdDL~~EI~~r~~~~eRv 449 (663)
T COG0556 392 VSATPGDYELEQSG--GNVVEQI-IRPTG---------------LLDPE----IEVRPTKGQVDDLLSEIRKRVAKNERV 449 (663)
T ss_pred EECCCChHHHHhcc--CceeEEe-ecCCC---------------CCCCc----eeeecCCCcHHHHHHHHHHHHhcCCeE
Confidence 99998764333322 1111122 11221 11111 1122333444444444432 366899
Q ss_pred EEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 191 IIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 191 lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
||-+-|+++||.|..+|.+. |+++..+|+++.
T Consensus 450 LVTtLTKkmAEdLT~Yl~e~----gikv~YlHSdid 481 (663)
T COG0556 450 LVTTLTKKMAEDLTEYLKEL----GIKVRYLHSDID 481 (663)
T ss_pred EEEeehHHHHHHHHHHHHhc----CceEEeeeccch
Confidence 99999999999999999999 999999999875
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.9e-05 Score=65.02 Aligned_cols=192 Identities=8% Similarity=-0.041 Sum_probs=113.1
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEE-EcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CC--cccCCccc
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLL-VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MD--VLDFRNLE 78 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~-~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~--~~~~~~l~ 78 (230)
+++.||+++++...+-+.-.....|..+...+ +.+...+.....+.+.+..+|++.|..+...+-- +. ...+-...
T Consensus 335 ~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~ 414 (1034)
T KOG4150|consen 335 LLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEEL 414 (1034)
T ss_pred ecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHH
Confidence 56778888876533322222222221111111 2222223344566678999999999987665432 11 11245567
Q ss_pred EEEEecccccccc--ccHH-HHHHHHHhC-----CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccch
Q 026925 79 ILVLDEADRLLDM--GFQK-QISYIISRL-----PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 79 ~lVvDEad~l~~~--~~~~-~~~~i~~~l-----~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (230)
+.++||+|..+.. .... .++++++.+ ..+.|++-.|||+-+.++.+...+--+...+...+.
T Consensus 415 ~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG---------- 484 (1034)
T KOG4150|consen 415 CKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG---------- 484 (1034)
T ss_pred HhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC----------
Confidence 8999999965432 2222 333333333 236799999999998888777766545444433333
Q ss_pred hccccCCCCccceEEEEEcCC---------CCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhh
Q 026925 151 QQLASSKTPLGLHLEYLECEP---------DEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLA 211 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~ 211 (230)
.|..-++++..-++ ++++.-..+++.. ..+-++|-||.+++-|+-+-...++.+
T Consensus 485 -------SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~ 549 (1034)
T KOG4150|consen 485 -------SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREIL 549 (1034)
T ss_pred -------CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHH
Confidence 57777888877663 1233333333332 366799999999999998877766553
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.8e-05 Score=68.64 Aligned_cols=116 Identities=15% Similarity=0.233 Sum_probs=72.3
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-c--CCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-E--GANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~-~--~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
||+||+..|- +|++.|...+|.+++...+|.-...++.+.... . ++|||++|......--....-+.-.++++
T Consensus 452 LVVvPsSTle----NWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~ 527 (941)
T KOG0389|consen 452 LVVVPSSTLE----NWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNY 527 (941)
T ss_pred EEEecchhHH----HHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccE
Confidence 7999998875 456666666678899888887765555554432 2 68999999976532111101123477889
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec-CchHHHHHH
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEELS 125 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt-~~~~~~~~~ 125 (230)
+|+||.|.+-+.+ -+.+.++++ ++ ..+.++++.| +-+++.++.
T Consensus 528 viyDEgHmLKN~~-SeRy~~LM~-I~-An~RlLLTGTPLQNNL~ELi 571 (941)
T KOG0389|consen 528 VIYDEGHMLKNRT-SERYKHLMS-IN-ANFRLLLTGTPLQNNLKELI 571 (941)
T ss_pred EEecchhhhhccc-hHHHHHhcc-cc-ccceEEeeCCcccccHHHHH
Confidence 9999999775543 333444432 33 4455666666 344444443
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0013 Score=59.29 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 172 DEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 172 ~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
..|+.++..+|+.. .+.++|.|..++.+.+.+-.+|... +||...-+-|..+.
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~---~~ysylRmDGtT~~ 583 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRA---KGYSYLRMDGTTPA 583 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhc---CCceEEEecCCCcc
Confidence 35788888888743 5679999999999999999999842 29999998887764
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00065 Score=62.24 Aligned_cols=83 Identities=11% Similarity=0.086 Sum_probs=61.2
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHH-HHhhCC-----cccCCc
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD-IMERMD-----VLDFRN 76 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~-~l~~~~-----~~~~~~ 76 (230)
=|++.+--||..=..++..+...+ |++++....+.+..+....+ .|||.+||...|-- +++.+- ..-.+.
T Consensus 123 hVVTvNdYLA~RDae~mg~vy~fL-GLsvG~i~~~~~~~~rr~aY---~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~ 198 (925)
T PRK12903 123 IVSTVNEYLAERDAEEMGKVFNFL-GLSVGINKANMDPNLKREAY---ACDITYSVHSELGFDYLRDNMVSSKEEKVQRG 198 (925)
T ss_pred EEEecchhhhhhhHHHHHHHHHHh-CCceeeeCCCCChHHHHHhc---cCCCeeecCcccchhhhhhcccccHHHhcCcc
Confidence 467777889988888888888888 99999888776665544443 58999999988632 444311 112477
Q ss_pred ccEEEEecccccc
Q 026925 77 LEILVLDEADRLL 89 (230)
Q Consensus 77 l~~lVvDEad~l~ 89 (230)
+.+.||||+|.++
T Consensus 199 ~~faIVDEVDSIL 211 (925)
T PRK12903 199 LNFCLIDEVDSIL 211 (925)
T ss_pred cceeeeccchhee
Confidence 8899999999986
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0015 Score=59.46 Aligned_cols=206 Identities=12% Similarity=0.131 Sum_probs=117.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+++..+.|+.++...+.... ++++....-.++. .+.....+-++...++|.++-. -.+.+.+++|
T Consensus 81 VLvVShRrSL~~sL~~rf~~~~--l~gFv~Y~d~~~~-------~i~~~~~~rLivqIdSL~R~~~----~~l~~yDvVI 147 (824)
T PF02399_consen 81 VLVVSHRRSLTKSLAERFKKAG--LSGFVNYLDSDDY-------IIDGRPYDRLIVQIDSLHRLDG----SLLDRYDVVI 147 (824)
T ss_pred EEEEEhHHHHHHHHHHHHhhcC--CCcceeeeccccc-------cccccccCeEEEEehhhhhccc----ccccccCEEE
Confidence 6889999999999888887652 2132211111111 1112346777887777655432 2466789999
Q ss_pred EeccccccccccHHHH-------HHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeE-EEEeccCcccccccch---
Q 026925 82 LDEADRLLDMGFQKQI-------SYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVR-VEVRAESKSHHVSASS--- 150 (230)
Q Consensus 82 vDEad~l~~~~~~~~~-------~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~--- 150 (230)
+||+...+..=|.+.+ ..+...+.....+|++-|++++..-.++..+.++... +....-...++....-
T Consensus 148 IDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~ 227 (824)
T PF02399_consen 148 IDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFL 227 (824)
T ss_pred EehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEe
Confidence 9999988764332222 2233445567789999999999999998887664433 2222211111211100
Q ss_pred ---------h--cccc---CC------CCccceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhh
Q 026925 151 ---------Q--QLAS---SK------TPLGLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 151 ---------~--~~~~---~~------~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
. +..+ +. .+......-+. .+.....-.|+... .++++-|||+|...++.++.+...
T Consensus 228 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~ 304 (824)
T PF02399_consen 228 RSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAIS---NDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCAR 304 (824)
T ss_pred cccCcHHHHHHhCCcccccccCCCcCCCCccccccccc---cchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHh
Confidence 0 0000 00 00111111111 22333444444433 567888999999999999999887
Q ss_pred hhccCCceEEeccCCCCC
Q 026925 210 LAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 210 ~~~~~g~~~~~lh~~~~~ 227 (230)
. +.++..+.|+-+.
T Consensus 305 ~----~~~Vl~l~s~~~~ 318 (824)
T PF02399_consen 305 F----TKKVLVLNSTDKL 318 (824)
T ss_pred c----CCeEEEEcCCCCc
Confidence 7 8888888776543
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00049 Score=64.46 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=69.1
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---Hhc-----CCcEEEEcChHHHHHHhhCCcccC
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEE-----GANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~-----~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
||++|..-+.. +.+.++.++ ++++++.+|+....+.+..+ .+. +++++++|.+.++.-- .-+.-
T Consensus 424 lvvvplst~~~-W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk---~~L~~ 495 (1373)
T KOG0384|consen 424 LVVVPLSTITA-WEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK---AELSK 495 (1373)
T ss_pred EEEeehhhhHH-HHHHHHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH---hhhcc
Confidence 78999777665 356666665 57888889887766555544 223 5899999999865422 12223
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec-CchHHHHH
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEEL 124 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt-~~~~~~~~ 124 (230)
-...++++||||+|-+.. ..+...+..+..+.++++ +.| +-+++.++
T Consensus 496 i~w~~~~vDeahrLkN~~--~~l~~~l~~f~~~~rlli-tgTPlQNsikEL 543 (1373)
T KOG0384|consen 496 IPWRYLLVDEAHRLKNDE--SKLYESLNQFKMNHRLLI-TGTPLQNSLKEL 543 (1373)
T ss_pred CCcceeeecHHhhcCchH--HHHHHHHHHhcccceeee-cCCCccccHHHH
Confidence 446799999999997542 222233555554555444 444 33344443
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00032 Score=63.49 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 171 PDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 171 ~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...+++.+..-++. ..+.+++|||+|++.|+.++..|.+. |+++..+||++++.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~ 479 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTL 479 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHH
Confidence 34566666666653 35679999999999999999999988 99999999998863
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=51.65 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 163 HLEYLECEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 163 ~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+++... +..|...+..++.+. ..+++||||++...++.++..|.+. +.++..+||+++.+
T Consensus 3 ~~~~~~~-~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~ 65 (131)
T cd00079 3 KQYVLPV-EDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP----GIKVAALHGDGSQE 65 (131)
T ss_pred EEEEEEC-CHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc----CCcEEEEECCCCHH
Confidence 3444443 337888888888866 3789999999999999999999986 89999999998754
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00033 Score=62.85 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=31.5
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
..+||+|+++..|...++. ..-.+...+++||||||++.+
T Consensus 181 ~~AdivItNHalL~~~~~~-~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRD-KWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhh-hcCCCCCCCEEEEeCCcchHH
Confidence 5579999999988876655 323456689999999999975
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=3.6e-05 Score=70.70 Aligned_cols=192 Identities=17% Similarity=0.145 Sum_probs=108.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-CcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-~~~~~~~l~~l 80 (230)
+++++|.++|+..-.+...+... .||+++.-++|+...+ ...+ ..++++|+||++.....++- +.-.+.++..+
T Consensus 976 vvyIap~kalvker~~Dw~~r~~-~~g~k~ie~tgd~~pd--~~~v--~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~i 1050 (1230)
T KOG0952|consen 976 VVYIAPDKALVKERSDDWSKRDE-LPGIKVIELTGDVTPD--VKAV--READIVITTPEKWDGISRSWQTRKYVQSVSLI 1050 (1230)
T ss_pred EEEEcCCchhhcccccchhhhcc-cCCceeEeccCccCCC--hhhe--ecCceEEcccccccCccccccchhhhccccce
Confidence 68999999999887777776643 3488999988887654 3333 56899999999977766631 33347899999
Q ss_pred EEeccccccccccHHHHHHHHHhC-------CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQL 153 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l-------~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 153 (230)
|+||.|. +..++++.++.+.... ++..+.+++|.-+. +...++++.-..+. ....+.. ..++.....
T Consensus 1051 v~de~hl-lg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~-na~dla~wl~~~~~-~nf~~sv--rpvp~~~~i- 1124 (1230)
T KOG0952|consen 1051 VLDEIHL-LGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALA-NANDLADWLNIKDM-YNFRPSV--RPVPLEVHI- 1124 (1230)
T ss_pred eeccccc-ccCCCcceEEEEeeccccCccccCcchhhhhHhhhhh-ccHHHHHHhCCCCc-CCCCccc--ccCCceEee-
Confidence 9999995 4555566554443332 33456666543332 23344433211111 1110000 000000000
Q ss_pred ccCCCCccceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 154 ASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 154 ~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
+..|. +++ +. .-..+..--...++.+ +.+|++||+++++....-+..|...
T Consensus 1125 --~gfp~--~~~-cp-rm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~ 1176 (1230)
T KOG0952|consen 1125 --DGFPG--QHY-CP-RMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIAS 1176 (1230)
T ss_pred --cCCCc--hhc-ch-hhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhh
Confidence 01111 111 11 1123333344455544 6689999999988766655555544
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00084 Score=60.98 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=43.7
Q ss_pred CCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 172 DEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 172 ~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
..++..+...++. ..+.+++|||+|++.|+.++..|.+. |+++..+||++++.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~ 483 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTL 483 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHH
Confidence 3456666666653 25679999999999999999999988 99999999998863
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.016 Score=50.00 Aligned_cols=212 Identities=13% Similarity=0.115 Sum_probs=116.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
.||+||..-+ .-+.+.+++|....- .+..+.++.+..... .....|.|.+.+.+..+- ..+.-...+.+|
T Consensus 244 lliVcPAsvr-ftWa~al~r~lps~~--pi~vv~~~~D~~~~~----~t~~~v~ivSye~ls~l~---~~l~~~~~~vvI 313 (689)
T KOG1000|consen 244 LLIVCPASVR-FTWAKALNRFLPSIH--PIFVVDKSSDPLPDV----CTSNTVAIVSYEQLSLLH---DILKKEKYRVVI 313 (689)
T ss_pred EEEEecHHHh-HHHHHHHHHhccccc--ceEEEecccCCcccc----ccCCeEEEEEHHHHHHHH---HHHhcccceEEE
Confidence 3788896543 445666777665432 244444544332211 233568888887754433 234445688999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecC-------------------chHHHHHHHhccCCCe-EEEEeccC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-------------------TEAVEELSKAGLRNPV-RVEVRAES 141 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~-------------------~~~~~~~~~~~~~~~~-~i~~~~~~ 141 (230)
+||.|++-+.. ....+.++.-+....++|++|.|. -++-.++...|...-. -+.....+
T Consensus 314 ~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg 392 (689)
T KOG1000|consen 314 FDESHMLKDSK-TKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKG 392 (689)
T ss_pred Eechhhhhccc-hhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCC
Confidence 99999775443 333555555555566778888873 2233444444443111 11111111
Q ss_pred ccccccc-----------chhccccCCCCccceEEEEEcCC-------------------------------------CC
Q 026925 142 KSHHVSA-----------SSQQLASSKTPLGLHLEYLECEP-------------------------------------DE 173 (230)
Q Consensus 142 ~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~-------------------------------------~~ 173 (230)
-.+.... +.+.-.-...|...+..++.+.. .-
T Consensus 393 ~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgia 472 (689)
T KOG1000|consen 393 CTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIA 472 (689)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhccc
Confidence 0000000 00111112334444444444442 12
Q ss_pred cHHHHHHHHHh------CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 174 KPSQLVDLLIK------NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 174 k~~~l~~ll~~------~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
|....++.|.. .+..+.+|||--....+.+..++.+. ++...-+-|..+..
T Consensus 473 K~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r----~vg~IRIDGst~s~ 529 (689)
T KOG1000|consen 473 KAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKR----KVGSIRIDGSTPSH 529 (689)
T ss_pred ccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHc----CCCeEEecCCCCch
Confidence 23333333332 36679999999999999999999988 89888888887753
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=61.61 Aligned_cols=38 Identities=34% Similarity=0.487 Sum_probs=29.3
Q ss_pred CCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
.+||+|+...-|...+.. .. .+...+++||||||++.+
T Consensus 413 ~AdivItNHall~~~~~~-~~-~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 413 TARLLITNHAYFLTRVQD-DK-DFARNKVLVFDEAQKLML 450 (820)
T ss_pred hCCEEEEchHHHHHHHhh-cc-CCCCCCEEEEECcchhHH
Confidence 479999999877776644 22 256789999999999964
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0029 Score=54.26 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=86.6
Q ss_pred EcChHHHHHHhh-------CCcccCCcccEEEEeccccc-ccc-ccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 57 GTPGRLYDIMER-------MDVLDFRNLEILVLDEADRL-LDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 57 ~TP~~l~~~l~~-------~~~~~~~~l~~lVvDEad~l-~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
+||..+++++.. ...-.+.+.+.+|+||||-= ++. -....++.+....| +..++.+|||+. ....+.
T Consensus 133 ~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~---a~Kfq~ 208 (699)
T KOG0925|consen 133 TSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLD---AEKFQR 208 (699)
T ss_pred CChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccc---hHHHHH
Confidence 456666554422 01223788999999999953 111 13344455555554 888999999976 345566
Q ss_pred ccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHH----HhCCCCeEEEEcCchhHHHHH
Q 026925 128 GLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLL----IKNKSKKIIIYFMTCACVDYW 203 (230)
Q Consensus 128 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll----~~~~~~~~lIF~~t~~~~~~l 203 (230)
|+.++-.+.+... ..+.-+|..-.+.+..+..++.+ .....+-+++|-...++.+..
T Consensus 209 yf~n~Pll~vpg~-------------------~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~a 269 (699)
T KOG0925|consen 209 YFGNAPLLAVPGT-------------------HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDA 269 (699)
T ss_pred HhCCCCeeecCCC-------------------CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHH
Confidence 7777776665432 12232343334444444444333 234567899999999999888
Q ss_pred HHHhhhhhc-----cCCceEEeccC
Q 026925 204 GVVLPRLAV-----LKSLSLIPLHG 223 (230)
Q Consensus 204 ~~~L~~~~~-----~~g~~~~~lh~ 223 (230)
++.+..... ....++.++|.
T Consensus 270 C~~i~re~~~L~~~~g~l~v~PLyP 294 (699)
T KOG0925|consen 270 CRKISREVDNLGPQVGPLKVVPLYP 294 (699)
T ss_pred HHHHHHHHHhhccccCCceEEecCc
Confidence 888774311 12346777773
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0039 Score=55.37 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=96.9
Q ss_pred CcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccc-ccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhcc
Q 026925 52 ANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (230)
Q Consensus 52 ~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~-~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~ 129 (230)
--|=++|-+.|++-+. ...++.+...+||||||-=- .-. ....+..|.+. ++...+++.|||+.. +.+.. |+
T Consensus 356 TvlKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdLKllIsSAT~DA--ekFS~-fF 429 (902)
T KOG0923|consen 356 TVLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDLKLLISSATMDA--EKFSA-FF 429 (902)
T ss_pred eeeeeecchhHHHHHh--ccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-CCcceEEeeccccCH--HHHHH-hc
Confidence 3467899999877665 45789999999999999521 111 22333444443 467889999999874 45544 55
Q ss_pred CCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHH----hCCCCeEEEEcCchhHHHHHHH
Q 026925 130 RNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLI----KNKSKKIIIYFMTCACVDYWGV 205 (230)
Q Consensus 130 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~----~~~~~~~lIF~~t~~~~~~l~~ 205 (230)
.+.-...+... .-.+..+|...++.+=+++....+. ..+.+-+|||-.-+++.+....
T Consensus 430 DdapIF~iPGR------------------RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e 491 (902)
T KOG0923|consen 430 DDAPIFRIPGR------------------RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKE 491 (902)
T ss_pred cCCcEEeccCc------------------ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHH
Confidence 54444333222 2234445566666555544433333 2355789999999988888777
Q ss_pred HhhhhhccCC-----ceEEeccCCCCCC
Q 026925 206 VLPRLAVLKS-----LSLIPLHGKMKQV 228 (230)
Q Consensus 206 ~L~~~~~~~g-----~~~~~lh~~~~~~ 228 (230)
.|.+....-| +-+.++|+.||++
T Consensus 492 ~l~~~~~~LGski~eliv~PiYaNLPse 519 (902)
T KOG0923|consen 492 NLKERCRRLGSKIRELIVLPIYANLPSE 519 (902)
T ss_pred HHHHHHHHhccccceEEEeeccccCChH
Confidence 7766532223 3578899999875
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0024 Score=51.36 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=63.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHH-HHhhC----Ccc-cCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD-IMERM----DVL-DFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~-~l~~~----~~~-~~~ 75 (230)
|=|++.+.-||..=+.++..+...+ |+++....++.+.++....+ .+||+.+|...+.- +++.. ... ..+
T Consensus 121 V~vvT~NdyLA~RD~~~~~~~y~~L-Glsv~~~~~~~~~~~r~~~Y---~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r 196 (266)
T PF07517_consen 121 VHVVTSNDYLAKRDAEEMRPFYEFL-GLSVGIITSDMSSEERREAY---AADIVYGTNSEFGFDYLRDNLALSKNEQVQR 196 (266)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHT-T--EEEEETTTEHHHHHHHH---HSSEEEEEHHHHHHHHHHHTT-SSGGG--SS
T ss_pred cEEEeccHHHhhccHHHHHHHHHHh-hhccccCccccCHHHHHHHH---hCcccccccchhhHHHHHHHHhhccchhccC
Confidence 4578999999999999999999998 99999999988866555444 36899999998754 44431 111 157
Q ss_pred cccEEEEecccccc
Q 026925 76 NLEILVLDEADRLL 89 (230)
Q Consensus 76 ~l~~lVvDEad~l~ 89 (230)
.+.++||||+|.++
T Consensus 197 ~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 197 GFDFAIVDEVDSIL 210 (266)
T ss_dssp SSSEEEECTHHHHT
T ss_pred CCCEEEEeccceEE
Confidence 88999999999986
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0026 Score=57.61 Aligned_cols=140 Identities=19% Similarity=0.154 Sum_probs=82.1
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccc--cHHHHHHHH---HhCCC------CCcEEEEeecCc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMG--FQKQISYII---SRLPK------LRRTGLFSATQT 118 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~--~~~~~~~i~---~~l~~------~~q~i~~SAt~~ 118 (230)
....|-++|-+-|++-+.+ .|.+.....||+||||-=.=.. ...-+.+|+ +...+ ....|++|||+.
T Consensus 348 e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 348 EDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred CCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEE
Confidence 3456999999999888874 6888999999999999632110 122223332 22222 345899999974
Q ss_pred hHHHHHH--HhccCCCe-EEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHH---HhCCCCeEEE
Q 026925 119 EAVEELS--KAGLRNPV-RVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLL---IKNKSKKIII 192 (230)
Q Consensus 119 ~~~~~~~--~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll---~~~~~~~~lI 192 (230)
- ..+. ++.|+.|- .+.+... ..|-.| |+--..+...-.++....+ ++.+.+-+||
T Consensus 426 V--sDFtenk~LFpi~pPlikVdAR----------------QfPVsI-HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILV 486 (1172)
T KOG0926|consen 426 V--SDFTENKRLFPIPPPLIKVDAR----------------QFPVSI-HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILV 486 (1172)
T ss_pred e--cccccCceecCCCCceeeeecc----------------cCceEE-EeccCCCchHHHHHHHHHHHHhhcCCCCcEEE
Confidence 2 2222 22333222 3444332 222222 2211112222223333333 2457789999
Q ss_pred EcCchhHHHHHHHHhhhh
Q 026925 193 YFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 193 F~~t~~~~~~l~~~L~~~ 210 (230)
|+.-+++++.++..|++.
T Consensus 487 FvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 487 FVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred EEeChHHHHHHHHHHHhh
Confidence 999999999999999987
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00081 Score=62.44 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=65.8
Q ss_pred cEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhC--C
Q 026925 109 RTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN--K 186 (230)
Q Consensus 109 q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~ 186 (230)
++.++|.|......++...|--+.+. +++.. +........ .+.....+|...+...+... .
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~Vv~--IPTnr--------------P~~R~D~~d-~vy~t~~eK~~Ali~~I~~~~~~ 597 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLDVVV--IPTNK--------------PIVRKDMDD-LVYKTRREKYNAIVLKVEELQKK 597 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCcEEE--CCCCC--------------CcceecCCC-eEecCHHHHHHHHHHHHHHHhhC
Confidence 56788888877666766554323222 22220 112222222 23345667999999988643 7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
++|+||||+|++.++.++..|... |++..++|+.-
T Consensus 598 grpVLIft~Sve~sE~Ls~~L~~~----gI~h~vLnakq 632 (1025)
T PRK12900 598 GQPVLVGTASVEVSETLSRMLRAK----RIAHNVLNAKQ 632 (1025)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHc----CCCceeecCCH
Confidence 789999999999999999999998 99999999853
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0023 Score=60.11 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=68.9
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHH-HHHHHH-hcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA-DVKKIE-EEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~l~-~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
||+|||.-+.+. .-+++++ +|++++...+|.-.... ....+. .+-+||.|++...+.+-+ ..|..++++++
T Consensus 669 LIVVpTsviLnW-EMElKRw---cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~---~AFkrkrWqyL 741 (1958)
T KOG0391|consen 669 LIVVPTSVILNW-EMELKRW---CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL---TAFKRKRWQYL 741 (1958)
T ss_pred eEEeechhhhhh-hHHHhhh---CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHH---HHHHhhcccee
Confidence 799999887653 4445555 56789988888543221 111221 134799999998876655 45778899999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
|+||||.+-++. ...++.++..- ..+.++++.|
T Consensus 742 vLDEaqnIKnfk-sqrWQAllnfn--sqrRLLLtgT 774 (1958)
T KOG0391|consen 742 VLDEAQNIKNFK-SQRWQALLNFN--SQRRLLLTGT 774 (1958)
T ss_pred ehhhhhhhcchh-HHHHHHHhccc--hhheeeecCC
Confidence 999999997764 34455555433 3445666666
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0061 Score=57.26 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 51 ~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
.+||+|+...-+...+.. ....+.+-+++||||||++.+
T Consensus 416 ~AdivItNHa~L~~~~~~-~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 416 QAQILITNHAYLITRLVD-NPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred cCCEEEecHHHHHHHhhc-ccccCCCCCEEEEECcchHHH
Confidence 478999999877665543 222334457999999999975
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.01 Score=56.32 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=69.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccC-CcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDF-RNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~-~~l~~l 80 (230)
+++|+-.++|-.|+.+.+..+..... ... ...+..+-.+.+....-.|+|+|-++|...+........ .+=-.+
T Consensus 306 v~fvvDR~dLd~Q~~~~f~~~~~~~~--~~~---~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivv 380 (962)
T COG0610 306 VLFVVDRKDLDDQTSDEFQSFGKVAF--NDP---KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVV 380 (962)
T ss_pred EEEEechHHHHHHHHHHHHHHHHhhh--hcc---cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEE
Confidence 68999999999999999999976542 111 222333333344323348999999999998876211112 222368
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
|+||||+- .++..-..+...++ +...++||.|.-
T Consensus 381 I~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi 414 (962)
T COG0610 381 IIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPI 414 (962)
T ss_pred EEechhhc---cccHHHHHHHHHhc-cceEEEeeCCcc
Confidence 89999985 34443334444443 488899999963
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.03 Score=51.22 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=78.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch-HHHHHHHH-----hcCCcEEEEcChHHHHHHhhCCcccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV-KADVKKIE-----EEGANLLIGTPGRLYDIMERMDVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~l~-----~~~~~Iiv~TP~~l~~~l~~~~~~~~~ 75 (230)
+||++|.. |+.-+++++.++.... .+....+++.... ......+. ....-|++-+.+.+.+..+. +...
T Consensus 301 ~lVV~P~s-Lv~nWkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~ 375 (776)
T KOG0390|consen 301 PLVVAPSS-LVNNWKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLI 375 (776)
T ss_pred cEEEccHH-HHHHHHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcC
Confidence 58999965 6666788888887542 5666666666552 11111111 12346788888888777654 5678
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC-chHHHHHHHh-ccCCCeEEEE
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEELSKA-GLRNPVRVEV 137 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~-~~~~~~~~~~-~~~~~~~i~~ 137 (230)
.++++|.||.|.+-+. ...+...+..+.-. +.+++|.|. -+++.++... .+-+|..+..
T Consensus 376 ~~glLVcDEGHrlkN~--~s~~~kaL~~l~t~-rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs 436 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLKNS--DSLTLKALSSLKTP-RRVLLTGTPIQNDLKEYFNLLDFVRPGFLGS 436 (776)
T ss_pred CCCeEEECCCCCccch--hhHHHHHHHhcCCC-ceEEeeCCcccccHHHHHHHHhhcChhhccc
Confidence 8899999999998544 23334445556434 445567774 4455554443 3456665544
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0031 Score=59.05 Aligned_cols=71 Identities=23% Similarity=0.068 Sum_probs=46.2
Q ss_pred CcEEEEcChHHHHHHhh--CCcccCC--c--ccEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHH
Q 026925 52 ANLLIGTPGRLYDIMER--MDVLDFR--N--LEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEE 123 (230)
Q Consensus 52 ~~Iiv~TP~~l~~~l~~--~~~~~~~--~--l~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~ 123 (230)
..++|||+..++..... .+...+. . =+.+||||+|.. +......+.+++.-.. -...++++|||+|+.+..
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 68999999999887632 1222221 1 257999999965 3333344555554332 257889999999987655
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=55.89 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=70.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||+||+ .|+-.+..++.+++.. +++....|+.......+.- -++++|+|++.+-+..-+.. +.-.+..++|
T Consensus 1034 SLIVCPs-TLtGHW~~E~~kf~pf---L~v~~yvg~p~~r~~lR~q-~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcV 1105 (1549)
T KOG0392|consen 1034 SLIVCPS-TLTGHWKSEVKKFFPF---LKVLQYVGPPAERRELRDQ-YKNANIIVTSYDVVRNDVDY---LIKIDWNYCV 1105 (1549)
T ss_pred eEEECCc-hhhhHHHHHHHHhcch---hhhhhhcCChHHHHHHHhh-ccccceEEeeHHHHHHHHHH---HHhcccceEE
Confidence 6899995 5888888888887644 5666666654332222221 25689999999887644432 2234567999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeec-CchHHHH
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEE 123 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt-~~~~~~~ 123 (230)
+||=|.+-+. ...+...++.+..+++.|+ |.| +-+++.+
T Consensus 1106 LDEGHVikN~--ktkl~kavkqL~a~hRLIL-SGTPIQNnvle 1145 (1549)
T KOG0392|consen 1106 LDEGHVIKNS--KTKLTKAVKQLRANHRLIL-SGTPIQNNVLE 1145 (1549)
T ss_pred ecCcceecch--HHHHHHHHHHHhhcceEEe-eCCCcccCHHH
Confidence 9999977544 4445555677766666666 666 3343333
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0054 Score=54.81 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=53.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHH----HHhh---CCcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD----IMER---MDVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~----~l~~---~~~~~~ 74 (230)
.|||||-+- .-|+++++.+-.... .++|...+|....+-..+.+ ..+||+|+|..-+.. -.+. +..+.-
T Consensus 386 TLII~PaSl-i~qW~~Ev~~rl~~n-~LsV~~~HG~n~r~i~~~~L--~~YDvViTTY~lva~~~~~e~~~~~~~spL~~ 461 (901)
T KOG4439|consen 386 TLIICPASL-IHQWEAEVARRLEQN-ALSVYLYHGPNKREISAKEL--RKYDVVITTYNLVANKPDDELEEGKNSSPLAR 461 (901)
T ss_pred eEEeCcHHH-HHHHHHHHHHHHhhc-ceEEEEecCCccccCCHHHH--hhcceEEEeeeccccCCchhhhcccCccHHHH
Confidence 489999664 556666666555554 68988888876433333333 679999999976544 1111 011112
Q ss_pred CcccEEEEeccccccc
Q 026925 75 RNLEILVLDEADRLLD 90 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~ 90 (230)
-....+|+||||.+-+
T Consensus 462 I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 462 IAWSRVILDEAHNIRN 477 (901)
T ss_pred hhHHHhhhhhhhhhcc
Confidence 2346799999998754
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.015 Score=47.27 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=70.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC--CcccC-----
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDF----- 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~--~~~~~----- 74 (230)
+|-++.+.+|-....+.++.++.. .+.+..+..- +.. ... .-+-.|+++|...|..--... ..-++
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~-~~~-~~~---~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKF-KYG-DII---RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC--cccceechhh-ccC-cCC---CCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 577888999999989999988754 3444433221 000 001 223459999998876654310 11111
Q ss_pred ----CcccEEEEeccccccccc--------cHHHHHHHHHhCCCCCcEEEEeecCchHHHHH
Q 026925 75 ----RNLEILVLDEADRLLDMG--------FQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (230)
Q Consensus 75 ----~~l~~lVvDEad~l~~~~--------~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~ 124 (230)
..=..||+||+|..-+.. -...+..+.+.+|+ .+++.+|||--.+.+.+
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPRNM 227 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCcee
Confidence 112489999999986543 23456667777864 45999999976554444
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.039 Score=51.30 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=52.2
Q ss_pred CcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 52 ANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 52 ~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
..|++.||.-+..-+-. +.++++.+..+||||||++....-..-+-++.+.-.+..-+.+|||...
T Consensus 8 ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 45999999887666655 8899999999999999999766545555556655566778999999865
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.017 Score=51.96 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=66.0
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH--------HhcCCcEEEEcChHHHHHHhhCCcccC
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI--------EEEGANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l--------~~~~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
||++|...|- ++...+.+++|++++.-.-|+.+........ ...+.||+|+|.+.+.. +. +.+.-
T Consensus 621 LVVtpaStL~----NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVt--De-ky~qk 693 (1185)
T KOG0388|consen 621 LVVTPASTLH----NWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVT--DE-KYLQK 693 (1185)
T ss_pred EEeehHHHHh----HHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeec--hH-HHHHh
Confidence 7888977764 4555666667788887766665433222221 13578999999987532 11 22333
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
-..++.|+|||..+-+.. ...++.++++-.+++ ++++.|.
T Consensus 694 vKWQYMILDEAQAIKSSs-S~RWKtLLsF~cRNR--LLLTGTP 733 (1185)
T KOG0388|consen 694 VKWQYMILDEAQAIKSSS-SSRWKTLLSFKCRNR--LLLTGTP 733 (1185)
T ss_pred hhhhheehhHHHHhhhhh-hhHHHHHhhhhccce--eeecCCc
Confidence 456799999999876543 455666666554443 5666664
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.096 Score=50.75 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=60.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++|+.+-+..+.+.+.++ +|+.++..++|+.+..+... .+.+++.+|+|+|- .+. ..+++.++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~---~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iie--rGIDIP~v 880 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 880 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhh--cccccccC
Confidence 4789999999888877777765 45678889999876654333 44568899999996 443 57899999
Q ss_pred cEEEEeccccc
Q 026925 78 EILVLDEADRL 88 (230)
Q Consensus 78 ~~lVvDEad~l 88 (230)
+++|++.+|++
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999999875
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.059 Score=46.69 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=56.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCccc-------
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLD------- 73 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~------- 73 (230)
.||++|+-+|. |+.+++.++.+. ..++...+|. ......+.+ .++|++.+|..-+-...+. ...++
T Consensus 234 tLVvaP~VAlm-QW~nEI~~~T~g--slkv~~YhG~-~R~~nikel--~~YDvVLTty~vvEs~yRk~~~GfrrKngv~k 307 (791)
T KOG1002|consen 234 TLVVAPTVALM-QWKNEIERHTSG--SLKVYIYHGA-KRDKNIKEL--MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDK 307 (791)
T ss_pred eeEEccHHHHH-HHHHHHHHhccC--ceEEEEEecc-cccCCHHHh--hcCcEEEEecHHHHHHHHhccccccccCCccc
Confidence 58999999874 678888888764 5676666553 333444555 5799999999877665543 11111
Q ss_pred ----CCcc--cEEEEeccccccc
Q 026925 74 ----FRNL--EILVLDEADRLLD 90 (230)
Q Consensus 74 ----~~~l--~~lVvDEad~l~~ 90 (230)
+.++ -.+|+||||.+-+
T Consensus 308 e~SlLHsi~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 308 EKSLLHSIKFYRIILDEAHNIKD 330 (791)
T ss_pred ccchhhhceeeeeehhhhccccc
Confidence 3333 4599999999875
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.14 Score=48.52 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=61.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++|+.+-+..++..++++ +|++++..++|+.+..+... .+.+++.+|+|+|- .+. ..+++.++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~---~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie--~GIDIp~v 731 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLREL---VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE--TGIDIPNA 731 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHh---CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cccccccC
Confidence 4789999999888888887775 35789999999876554443 44567899999996 444 57899999
Q ss_pred cEEEEeccccc
Q 026925 78 EILVLDEADRL 88 (230)
Q Consensus 78 ~~lVvDEad~l 88 (230)
+++|++.+|+.
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999874
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.62 Score=42.25 Aligned_cols=149 Identities=12% Similarity=0.123 Sum_probs=82.9
Q ss_pred cEEEEcChHHHHHHhhCCcccCCcccEEEEecccccccc-c-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccC
Q 026925 53 NLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-G-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (230)
Q Consensus 53 ~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~ 130 (230)
.|=++|-+-|++-.- ..-.+.+...+|+||||-=.-. . ....++..+.. +.+..+|..|||+.. ..+.+-|-.
T Consensus 447 ~IkymTDGiLLrEsL--~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~a--~kf~nfFgn 521 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESL--KDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMDA--QKFSNFFGN 521 (1042)
T ss_pred eEEEeccchHHHHHh--hhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccccH--HHHHHHhCC
Confidence 466778877655322 2235778899999999964211 1 12222223332 347789999999874 566665443
Q ss_pred CCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh-------CCCCeEEEEcCchhHHHHH
Q 026925 131 NPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK-------NKSKKIIIYFMTCACVDYW 203 (230)
Q Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-------~~~~~~lIF~~t~~~~~~l 203 (230)
.|.. .+... ..|-.+-+ .. ..--+++...+++ ...+.+|||..-++..+-.
T Consensus 522 ~p~f-~IpGR----------------TyPV~~~~--~k---~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 522 CPQF-TIPGR----------------TYPVEIMY--TK---TPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred Ccee-eecCC----------------ccceEEEe--cc---CchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 5543 32222 12222221 11 1112333333331 2446899999988776665
Q ss_pred HHHhhhh----hccC--CceEEeccCCCCCC
Q 026925 204 GVVLPRL----AVLK--SLSLIPLHGKMKQV 228 (230)
Q Consensus 204 ~~~L~~~----~~~~--g~~~~~lh~~~~~~ 228 (230)
+..++.. ...+ +..+.++.+.||++
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~d 610 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPAD 610 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchh
Confidence 5555443 3333 66788888888764
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.25 Score=46.69 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=64.0
Q ss_pred eEEEeCChhhHHHHHHHHH--H----hhhhCCC--ceEEEEEcCc-------chHHHHHHHHhc------CCcEEEEcCh
Q 026925 2 GMIISPTRELSSQIYHVAQ--P----FISTLPD--VKSVLLVGGV-------EVKADVKKIEEE------GANLLIGTPG 60 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~--~----l~~~~~~--~~v~~~~~~~-------~~~~~~~~l~~~------~~~Iiv~TP~ 60 (230)
.||+||+.+.-..+.+-+. . |...+.+ ++...+.++. .....+..+... ..+|+|+|-+
T Consensus 92 fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niq 171 (986)
T PRK15483 92 FIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAG 171 (986)
T ss_pred EEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehH
Confidence 5899999888777766554 1 1111212 4444455433 223444444333 4799999999
Q ss_pred HHHHHHh----------h-C-Cccc-CCcc-cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 61 RLYDIME----------R-M-DVLD-FRNL-EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 61 ~l~~~l~----------~-~-~~~~-~~~l-~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
.|..-.- . . .+++ ++.. -.+|+||.|++-..+ .....| ..+.+.. ++.+|||+++
T Consensus 172 a~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 172 MLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 8866211 0 0 0111 2222 258999999996532 233444 4454333 5669999986
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.7 Score=39.83 Aligned_cols=112 Identities=12% Similarity=0.202 Sum_probs=71.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|+++|+.-|..+...+... ++.+..++++.+..+... .+..++.+|+|||- .+. .++++.+++
T Consensus 445 vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L~--rGfDiP~v~ 512 (655)
T TIGR00631 445 VLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDLPEVS 512 (655)
T ss_pred EEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hhc--CCeeeCCCc
Confidence 689999999999888888764 677888888765443333 34457799999983 443 578999999
Q ss_pred EEEEeccccccccc-cHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHH
Q 026925 79 ILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 79 ~lVvDEad~l~~~~-~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~ 125 (230)
++|+-++|..--.. ....+.++-+.-+ .....+++--..+..+...+
T Consensus 513 lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 513 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred EEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHH
Confidence 99999998752221 2223333322221 23456666555655444433
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.092 Score=49.05 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=51.8
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH-HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD-VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+||+.-|.+. ...+..++ |.+......|....... ...+..++++|+++|.+.+.. +. ..+.--+..++|
T Consensus 448 LvivPlstL~NW-~~Ef~kWa---PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk-~lLsKI~W~yMI 520 (1157)
T KOG0386|consen 448 LIIVPLSTLVNW-SSEFPKWA---PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DK-ALLSKISWKYMI 520 (1157)
T ss_pred EEeccccccCCc-hhhccccc---cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CH-HHHhccCCccee
Confidence 799999999875 45555554 34555555554332211 123334789999999987644 11 223345567999
Q ss_pred Eeccccccc
Q 026925 82 LDEADRLLD 90 (230)
Q Consensus 82 vDEad~l~~ 90 (230)
|||-|+|-+
T Consensus 521 IDEGHRmKN 529 (1157)
T KOG0386|consen 521 IDEGHRMKN 529 (1157)
T ss_pred ecccccccc
Confidence 999999954
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.17 Score=47.01 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=56.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH----------------HH--------HhcCCcEEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK----------------KI--------EEEGANLLIG 57 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~----------------~l--------~~~~~~Iiv~ 57 (230)
+|.|||+-.|..|..+.+..-.. . +++...++++.......+ .+ ...+--|+++
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~~-l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQKE-L-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhccC-c-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 68999999999998777765432 2 567776665433211100 00 1134578999
Q ss_pred cChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 58 TPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 58 TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
|.+++...-.. ...-+..++++|-||||+...
T Consensus 287 TYQSl~~i~eA-Qe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 287 TYQSLPRIKEA-QEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred cccchHHHHHH-HHcCCCCccEEEecchhcccc
Confidence 99987665443 334477889999999999864
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.29 Score=43.09 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=99.4
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVv 82 (230)
++--|.|.||.++++.+... ++.+-.++|.......-+ ...++.+=+|-|+. .- -...+.-|+
T Consensus 219 vycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~---~~~a~hvScTVEM~----sv-----~~~yeVAVi 281 (700)
T KOG0953|consen 219 VYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN---GNPAQHVSCTVEMV----SV-----NTPYEVAVI 281 (700)
T ss_pred eecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC---CCcccceEEEEEEe----ec-----CCceEEEEe
Confidence 55679999999999999887 667777777433211110 12366777777753 11 133568999
Q ss_pred eccccccccccHHHHHH-HHHhCCCCCcEEEEeecCchHHHHHHHhccC---CCeEEEEeccCcccccccchhccccCCC
Q 026925 83 DEADRLLDMGFQKQISY-IISRLPKLRRTGLFSATQTEAVEELSKAGLR---NPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 83 DEad~l~~~~~~~~~~~-i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
||+..|-+.+.+-.+.+ ++.....+.+.++= +.+..+.++.+. +.+.+.
T Consensus 282 DEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldlV~~i~k~TGd~vev~---------------------- 334 (700)
T KOG0953|consen 282 DEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDLVRKILKMTGDDVEVR---------------------- 334 (700)
T ss_pred hhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHHHHHHHhhcCCeeEEE----------------------
Confidence 99998887654444443 33333344444442 233334433322 222221
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.|-...+-.-.+.+..-++....+-|+| |=|++..-.+-..+.+.. +.+++++.|++|++
T Consensus 335 ------~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g---~~k~aVIYGsLPPe 394 (700)
T KOG0953|consen 335 ------EYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAG---NHKCAVIYGSLPPE 394 (700)
T ss_pred ------eecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhc---CcceEEEecCCCCc
Confidence 1222222222234455555555555555 446777888888888872 45699999999985
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.45 Score=45.52 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=61.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
|+-+|.|--+=..++...++.+ .|..+++..+|.-...+..+ .+.++.+||+|+|- .+. ..++..+.
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIE--tGIDIPnA 874 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIE--TGIDIPNA 874 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eee--cCcCCCCC
Confidence 4678888777777777777776 57889999999876554433 44568899999986 454 57999999
Q ss_pred cEEEEeccccc
Q 026925 78 EILVLDEADRL 88 (230)
Q Consensus 78 ~~lVvDEad~l 88 (230)
.++|||-||++
T Consensus 875 NTiIIe~AD~f 885 (1139)
T COG1197 875 NTIIIERADKF 885 (1139)
T ss_pred ceEEEeccccc
Confidence 99999999987
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.3 Score=40.42 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=54.2
Q ss_pred CeEEEeCChhh-----HHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcc
Q 026925 1 MGMIISPTREL-----SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVL 72 (230)
Q Consensus 1 ~~lil~Pt~eL-----a~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~ 72 (230)
+++|++|+.+- .......++.+...+++.++..++|+.+..+... .+.+++.+|+|+|. .+. ..+
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie--~Gv 522 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIE--VGV 522 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eee--cCc
Confidence 46888987532 1222233334433345789999999876554433 34457899999996 333 568
Q ss_pred cCCcccEEEEeccccc
Q 026925 73 DFRNLEILVLDEADRL 88 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l 88 (230)
++.+++++|+..++..
T Consensus 523 DiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 523 DVPNATVMVIEDAERF 538 (630)
T ss_pred ccCCCcEEEEeCCCcC
Confidence 8999999999888864
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.34 Score=44.32 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=56.6
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVv 82 (230)
||++|+-.+ .|+...+.+....- .+.+...+| ...+...+ .++||+++||..+.. ..+..-..-.+|+
T Consensus 193 Livcp~s~~-~qW~~elek~~~~~-~l~v~v~~g---r~kd~~el--~~~dVVltTy~il~~-----~~l~~i~w~Riil 260 (674)
T KOG1001|consen 193 LIVCPTSLL-TQWKTELEKVTEED-KLSIYVYHG---RTKDKSEL--NSYDVVLTTYDILKN-----SPLVKIKWLRIVL 260 (674)
T ss_pred eEecchHHH-HHHHHHHhccCCcc-ceEEEEecc---cccccchh--cCCceEEeeHHHhhc-----ccccceeEEEEEe
Confidence 678887655 55566666665543 566666666 12222232 678999999986652 1122233457999
Q ss_pred eccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 83 DEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 83 DEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
||||.+....-. .......+...++.++ ++|
T Consensus 261 dea~~ikn~~tq--~~~a~~~L~a~~RWcL-tgt 291 (674)
T KOG1001|consen 261 DEAHTIKNKDTQ--IFKAVCQLDAKYRWCL-TGT 291 (674)
T ss_pred ccccccCCcchH--hhhhheeeccceeeee-cCC
Confidence 999988655322 2222333444555555 444
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.58 Score=40.38 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=53.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|..+...+... ++++..++|+.+..+... .+.++..+|+|+|- .+. ..+++.+++
T Consensus 258 ~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~--rGiDip~v~ 325 (423)
T PRK04837 258 AIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA--RGLHIPAVT 325 (423)
T ss_pred EEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh--cCCCccccC
Confidence 799999999998888777653 678889999876554443 34467899999995 333 568889999
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 326 ~VI~~d 331 (423)
T PRK04837 326 HVFNYD 331 (423)
T ss_pred EEEEeC
Confidence 887443
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.068 Score=40.18 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=26.2
Q ss_pred cCCcEEEEcChHHHHHHhhCCcc--cCCcccEEEEecccccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVL--DFRNLEILVLDEADRLLDM 91 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~--~~~~l~~lVvDEad~l~~~ 91 (230)
..+||+|++..-|.+-.-. ..+ ...+-..+||||||.+.+.
T Consensus 118 ~~adivi~~y~yl~~~~~~-~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIR-KSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSHHHH-HHHCT--CCCEEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhHHHH-hhhccccccCcEEEEecccchHHH
Confidence 4589999999876654322 111 1234468999999998654
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.6 Score=40.23 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=54.9
Q ss_pred CeEEEeCChhh-----HHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcc
Q 026925 1 MGMIISPTREL-----SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVL 72 (230)
Q Consensus 1 ~~lil~Pt~eL-----a~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~ 72 (230)
+++|++|+.+= .......++.+...++++++..++|+.+..+... .+.+++.+|+|+|. .+. ..+
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie--~Gi 545 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIE--VGV 545 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----cee--eCc
Confidence 47899996431 1122334444444455688999999876554444 34456789999996 333 568
Q ss_pred cCCcccEEEEeccccc
Q 026925 73 DFRNLEILVLDEADRL 88 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l 88 (230)
++.+++++|+..++++
T Consensus 546 Dip~v~~VIi~~~~r~ 561 (681)
T PRK10917 546 DVPNATVMVIENAERF 561 (681)
T ss_pred ccCCCcEEEEeCCCCC
Confidence 8999999999998864
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=92.66 E-value=2.6 Score=38.96 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHhhhhCCCceEEEEEcCcc-----hHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEec
Q 026925 10 ELSSQIYHVAQPFISTLPDVKSVLLVGGVE-----VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDE 84 (230)
Q Consensus 10 eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~-----~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDE 84 (230)
.-++++...++++ +|+.++..++++.. .++....+.+++++|+|||.- +. +.+++.++.++++-.
T Consensus 437 ~G~e~~~e~l~~~---fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----ia--kG~d~p~v~lV~il~ 506 (679)
T PRK05580 437 PGTERLEEELAEL---FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQM-----LA--KGHDFPNVTLVGVLD 506 (679)
T ss_pred ccHHHHHHHHHHh---CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChh-----hc--cCCCCCCcCEEEEEc
Confidence 3445555555554 67788888887754 223345665678999999993 33 568899999999999
Q ss_pred ccccccc
Q 026925 85 ADRLLDM 91 (230)
Q Consensus 85 ad~l~~~ 91 (230)
+|..+..
T Consensus 507 aD~~l~~ 513 (679)
T PRK05580 507 ADLGLFS 513 (679)
T ss_pred CchhccC
Confidence 9988754
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=1 Score=40.67 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=55.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||+++|++.|.++++.+.+. ++.+..++|+.+..+... .+.++..+|||+|- .+. ..+++.++
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a--rGIDip~V 326 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA--RGLHIDGV 326 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh--cCCCccCC
Confidence 3799999999999988888764 678899999877654443 34457799999995 343 46888999
Q ss_pred cEEEEecc
Q 026925 78 EILVLDEA 85 (230)
Q Consensus 78 ~~lVvDEa 85 (230)
+++|.-+.
T Consensus 327 ~~VInyd~ 334 (572)
T PRK04537 327 KYVYNYDL 334 (572)
T ss_pred CEEEEcCC
Confidence 98886443
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=92.56 E-value=2 Score=38.12 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEcCcch-----HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccc
Q 026925 13 SQIYHVAQPFISTLPDVKSVLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADR 87 (230)
Q Consensus 13 ~q~~~~~~~l~~~~~~~~v~~~~~~~~~-----~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~ 87 (230)
+++...+.+ .+|+.++..++++... +.....+.+++++|+|||+- +. +.+++.++.+++|=.+|.
T Consensus 272 e~~~e~l~~---~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----i~--kG~d~~~v~lV~vl~aD~ 341 (505)
T TIGR00595 272 EQVEEELAK---LFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM-----IA--KGHHFPNVTLVGVLDADS 341 (505)
T ss_pred HHHHHHHHh---hCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc-----cc--cCCCCCcccEEEEEcCcc
Confidence 444445554 4677888888887543 33455665678999999994 33 568899999999999998
Q ss_pred cccc
Q 026925 88 LLDM 91 (230)
Q Consensus 88 l~~~ 91 (230)
.+..
T Consensus 342 ~l~~ 345 (505)
T TIGR00595 342 GLHS 345 (505)
T ss_pred cccC
Confidence 7653
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.74 Score=38.76 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=40.3
Q ss_pred CceEEEEEcCcchHHHHHHHHhcCC-----cEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccc-------cHH
Q 026925 28 DVKSVLLVGGVEVKADVKKIEEEGA-----NLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMG-------FQK 95 (230)
Q Consensus 28 ~~~v~~~~~~~~~~~~~~~l~~~~~-----~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~-------~~~ 95 (230)
+-++..+.+..+............. ...+..|..+...... ......+.+++||||||++...+ ...
T Consensus 31 ~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~ 109 (352)
T PF09848_consen 31 GKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPN 109 (352)
T ss_pred CCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHH
Confidence 3455555555444332322222221 3344555554443331 22446788999999999998732 245
Q ss_pred HHHHHHHh
Q 026925 96 QISYIISR 103 (230)
Q Consensus 96 ~~~~i~~~ 103 (230)
.+..+++.
T Consensus 110 ~L~~i~~~ 117 (352)
T PF09848_consen 110 QLDEIIKR 117 (352)
T ss_pred HHHHHHhc
Confidence 66666665
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.29 Score=37.87 Aligned_cols=41 Identities=32% Similarity=0.620 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEe
Q 026925 42 ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLD 83 (230)
Q Consensus 42 ~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvD 83 (230)
.+.+....+..++-||||.|+..++.. +.|.++.+.++|+|
T Consensus 187 ~~~k~~k~~~v~~gIgTp~Ri~~lv~~-~~f~~~~lk~iIlD 227 (271)
T KOG3089|consen 187 AQVKLLKKRVVHLGIGTPGRIKELVKQ-GGFNLSPLKFIILD 227 (271)
T ss_pred HHHHHHhhcceeEeecCcHHHHHHHHh-cCCCCCcceeEEee
Confidence 444445456688999999999999998 77999999999877
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.30 E-value=2.1 Score=37.86 Aligned_cols=110 Identities=15% Similarity=0.312 Sum_probs=80.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|.+-|+-+|.++-+-+..+ |+++..++++...-+....+ ..+.+|++||- .+++ ..+++..+.
T Consensus 449 vLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR--EGLDiPEVs 516 (663)
T COG0556 449 VLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDLPEVS 516 (663)
T ss_pred EEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh--ccCCCccee
Confidence 578888888888777766665 89999999998876665544 34779999993 3666 468999999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCC-----CCCcEEEEeecCchHHHHHHH
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~-----~~~q~i~~SAt~~~~~~~~~~ 126 (230)
++.|=+||. .||...-+.++..+. .+-++|+..-.+++.+.....
T Consensus 517 LVAIlDADK---eGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 517 LVAILDADK---EGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAID 566 (663)
T ss_pred EEEEeecCc---cccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHH
Confidence 999888886 466554444444442 356788888888877665443
|
|
| >cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.25 Score=32.57 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
..+++++||++-..+...+..|+.. |+++..+.||+..
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~----G~~v~~l~GG~~~ 87 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQN----GFKVKNLDGGYKT 87 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHC----CCCEEEecCCHHH
Confidence 4578999999988899999999887 8899999999853
|
Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.3 Score=38.97 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=54.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|.++...+++. ++++..++++.+..+... .+.++..+|||+|-. +. ..+++.+++
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~-----~~--~GID~p~V~ 296 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA-----FG--MGINKPDVR 296 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech-----hh--ccCCcccce
Confidence 589999999999988888764 678888999877654443 344678999999963 22 468888999
Q ss_pred EEEEecc
Q 026925 79 ILVLDEA 85 (230)
Q Consensus 79 ~lVvDEa 85 (230)
++|.-..
T Consensus 297 ~VI~~~~ 303 (470)
T TIGR00614 297 FVIHYSL 303 (470)
T ss_pred EEEEeCC
Confidence 9885544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=1 Score=38.94 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=53.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-|..+...++.. ++++..++|+.+..+... .+.++..+|||+|- .+. ..+++.+++
T Consensus 248 ~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~--~GiDip~v~ 315 (434)
T PRK11192 248 SIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAA--RGIDIDDVS 315 (434)
T ss_pred EEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCccCCCCC
Confidence 699999999999988888763 678888999877655544 34457899999994 332 567889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 316 ~VI~ 319 (434)
T PRK11192 316 HVIN 319 (434)
T ss_pred EEEE
Confidence 9874
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.24 Score=45.70 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=29.3
Q ss_pred cCCcEEEEcChHHHHHHhh-CCcccC-CcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMER-MDVLDF-RNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~-~~~~~~-~~l~~lVvDEad~l~~ 90 (230)
..+||+|+...-|..-+.. .+.+.. -+.+++||||||++.+
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 5689999999987765532 122222 2578899999999975
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.21 Score=47.59 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=30.1
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~ 90 (230)
..+||+|+...-|...+.. +.-.+...+++||||||++.+
T Consensus 430 ~~AdivItNHalLl~dl~~-~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 430 KFADLVITNHALLLTDLTS-EEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred hcCCEEEECHHHHHHHHhh-hcccCCCCCeEEEECCchHHH
Confidence 3479999999987776643 222345679999999999974
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.19 Score=41.13 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=27.8
Q ss_pred cCCcEEEEcChHHHHHHhh-CCcccCCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~lVvDEad~l~~ 90 (230)
..+||||++..-|.+-... .-...+ .-.++||||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 3489999999887654422 112233 468999999999864
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.19 Score=41.13 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=27.8
Q ss_pred cCCcEEEEcChHHHHHHhh-CCcccCCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~lVvDEad~l~~ 90 (230)
..+||||++..-|.+-... .-...+ .-.++||||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 3489999999887654422 112233 468999999999864
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.6 Score=38.90 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=54.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++.|+..|..+...+... ++++..++|+.+..+....+ .++..+|+|+|--- . ..+++.++.
T Consensus 276 ~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva-----a--RGiDi~~v~ 343 (513)
T COG0513 276 VIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA-----A--RGLDIPDVS 343 (513)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh-----h--ccCCccccc
Confidence 799999999999977666664 68999999998876555544 45789999999743 2 578888888
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 344 ~Vi 346 (513)
T COG0513 344 HVI 346 (513)
T ss_pred eeE
Confidence 885
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.9 Score=37.74 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=52.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-|..+...+.+. ++.+..++|+.+..+... .+.++..+|+|+|- .+. ..+++.+++
T Consensus 248 ~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~--rGiDip~v~ 315 (456)
T PRK10590 248 VLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA--RGLDIEELP 315 (456)
T ss_pred EEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh--cCCCcccCC
Confidence 699999999999888777653 678888999877654443 34456789999995 333 468888898
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 316 ~VI~ 319 (456)
T PRK10590 316 HVVN 319 (456)
T ss_pred EEEE
Confidence 8873
|
|
| >cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.41 Score=32.11 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+.++++++|.+-.++...+..|.+. |+++..+.||+..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~----G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAER----GYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc----CceeEEeCCcHHh
Confidence 5579999999988899999999988 9999999999853
|
This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=90.53 E-value=3.9 Score=28.25 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=51.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-+.++.+.+++. +..+..+.|+.+..+.. ..+.++...|+++|.. +. ..+++...+
T Consensus 31 ~lvf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-----~~--~G~d~~~~~ 98 (131)
T cd00079 31 VLIFCPSKKMLDELAELLRKP-----GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-----IA--RGIDLPNVS 98 (131)
T ss_pred EEEEeCcHHHHHHHHHHHHhc-----CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-----hh--cCcChhhCC
Confidence 589999999999988888772 56778888876543332 2344456789999863 22 456777888
Q ss_pred EEEEeccc
Q 026925 79 ILVLDEAD 86 (230)
Q Consensus 79 ~lVvDEad 86 (230)
++|+.+.+
T Consensus 99 ~vi~~~~~ 106 (131)
T cd00079 99 VVINYDLP 106 (131)
T ss_pred EEEEeCCC
Confidence 88877764
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.9 Score=38.66 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=52.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.|+|+.-|..+...++.. ++.+..++|+.+..+... .+.++...|||+|- .+. ..+++.+++
T Consensus 380 ~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~--rGIDi~~v~ 447 (545)
T PTZ00110 380 ILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS--RGLDVKDVK 447 (545)
T ss_pred EEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh--cCCCcccCC
Confidence 799999999999888877642 567888899877665443 44456789999996 333 568889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 448 ~VI~ 451 (545)
T PTZ00110 448 YVIN 451 (545)
T ss_pred EEEE
Confidence 9885
|
|
| >smart00450 RHOD Rhodanese Homology Domain | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.79 Score=30.04 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=33.8
Q ss_pred hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 184 KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 184 ~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+..++++||++-..+..++..|... |++ +..+.||+.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~----G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLREL----GFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHc----CCCceEEecCCHH
Confidence 346689999999999999999999988 887 888898875
|
An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. |
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=2 Score=37.59 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=54.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-|..++..+... ++.+..++|+.+..+... .+.++..+|+|+|- .+. ..+++.+++
T Consensus 245 ~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~--rGiDi~~v~ 312 (460)
T PRK11776 245 CVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAA--RGLDIKALE 312 (460)
T ss_pred eEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccc--cccchhcCC
Confidence 689999999999988887664 678889999877665444 33356789999995 333 468888999
Q ss_pred EEEEecc
Q 026925 79 ILVLDEA 85 (230)
Q Consensus 79 ~lVvDEa 85 (230)
++|.-+.
T Consensus 313 ~VI~~d~ 319 (460)
T PRK11776 313 AVINYEL 319 (460)
T ss_pred eEEEecC
Confidence 8885443
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.9 Score=37.97 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=54.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l---~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|++.++.-|.-+.+.+.++ ++++..++|+...++....| ..+..+|+|+|--. . ..++..++.
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA------g-RGIDIpnVS 587 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVA------G-RGIDIPNVS 587 (673)
T ss_pred EEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc------c-cCCCCCccc
Confidence 589999999999988888887 57999999998876555544 34678999999742 2 568889998
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 588 lVi 590 (673)
T KOG0333|consen 588 LVI 590 (673)
T ss_pred eee
Confidence 876
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.85 Score=42.92 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=54.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCce-EEEEEcCcch----HHHHHHHHhcC----CcEEEEcChHHHHHHhhCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEV----KADVKKIEEEG----ANLLIGTPGRLYDIMERMDVL 72 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~-v~~~~~~~~~----~~~~~~l~~~~----~~Iiv~TP~~l~~~l~~~~~~ 72 (230)
++|++|+..+ .++.+.+.++.. .++ +....|.... .+....+.... .+++++|.+.+.........+
T Consensus 393 ~liv~p~s~~-~nw~~e~~k~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l 468 (866)
T COG0553 393 ALIVVPASLL-SNWKREFEKFAP---DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGL 468 (866)
T ss_pred eEEEecHHHH-HHHHHHHhhhCc---cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHH
Confidence 5788887654 445666666654 445 6666665541 33333443322 799999999887732111345
Q ss_pred cCCcccEEEEecccccccc
Q 026925 73 DFRNLEILVLDEADRLLDM 91 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l~~~ 91 (230)
.-.....+|+||+|.+.+.
T Consensus 469 ~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 469 KKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hhceeeeeehhhHHHHhhh
Confidence 5677889999999996543
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=2.6 Score=37.03 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=52.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-|..++..+.+. ++.+..++|+.+..++.. .+.++...|||+|. .+. ..+++.+++
T Consensus 338 ~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~--~GIDi~~v~ 405 (475)
T PRK01297 338 VMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAG--RGIHIDGIS 405 (475)
T ss_pred EEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCCcccCCC
Confidence 799999999999888777653 567888888877665544 33356789999995 333 568889999
Q ss_pred EEEEe
Q 026925 79 ILVLD 83 (230)
Q Consensus 79 ~lVvD 83 (230)
++|.-
T Consensus 406 ~VI~~ 410 (475)
T PRK01297 406 HVINF 410 (475)
T ss_pred EEEEe
Confidence 99854
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.73 E-value=1.8 Score=38.28 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=54.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH---hcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~---~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.|-|+.-|.++...++.. +..+..++|+.+..+....|. ++.+.|+|+|--. . ..+++.+++
T Consensus 344 vIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA------a-RGLDi~dV~ 411 (519)
T KOG0331|consen 344 VIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA------A-RGLDVPDVD 411 (519)
T ss_pred EEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc------c-ccCCCcccc
Confidence 789999999999887777764 468899999998777666553 5679999999732 2 678889999
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 412 lVI 414 (519)
T KOG0331|consen 412 LVI 414 (519)
T ss_pred EEE
Confidence 887
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=2.4 Score=37.74 Aligned_cols=71 Identities=8% Similarity=0.156 Sum_probs=53.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|..+.+.+.... ++++..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~~----g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~--rGiDip~v~ 438 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVVT----GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG--RGVDLLRVR 438 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhcc----CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh--ccCCcccCC
Confidence 6899999999988777776532 678888999877655444 33457789999997 333 568899999
Q ss_pred EEEEe
Q 026925 79 ILVLD 83 (230)
Q Consensus 79 ~lVvD 83 (230)
++|.=
T Consensus 439 ~VI~~ 443 (518)
T PLN00206 439 QVIIF 443 (518)
T ss_pred EEEEe
Confidence 99853
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.82 Score=37.51 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=38.5
Q ss_pred cCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC---chHHHHHHHhccCC
Q 026925 73 DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ---TEAVEELSKAGLRN 131 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~---~~~~~~~~~~~~~~ 131 (230)
.....+.+|+||||.|-... ...+++.+...++...+++...-+ ++.+..-..+|...
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk 186 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFK 186 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCC
Confidence 35667999999999887654 455677777777777777765553 34444444444433
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.41 Score=39.17 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=26.4
Q ss_pred CCcccEEEEecccccccccc--HHHHHHHHHhCCCCCcE
Q 026925 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRT 110 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~--~~~~~~i~~~l~~~~q~ 110 (230)
--+++++||||+|.++..+. ...+...++++.+..++
T Consensus 143 ~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 35689999999999988763 33455567777665543
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=89.42 E-value=2.7 Score=38.47 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=51.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||+|+|+.-+.++...+... ++.+..++|+.+..+... .+.+++.+|||+|- .+. ..+++.++
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~a--rGIDip~V 314 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAA--RGLDVERI 314 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHh--cCCCcccC
Confidence 3799999999999988877653 578888898876654433 44457899999995 333 35677777
Q ss_pred cEEEE
Q 026925 78 EILVL 82 (230)
Q Consensus 78 ~~lVv 82 (230)
+++|.
T Consensus 315 ~~VI~ 319 (629)
T PRK11634 315 SLVVN 319 (629)
T ss_pred CEEEE
Confidence 77664
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=89.13 E-value=2.4 Score=38.62 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=51.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|.+++..+++. ++++..++++.+..+... .+..+..+|+|+|.. +. ..+++.+++
T Consensus 239 ~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a-----~~--~GIDip~V~ 306 (607)
T PRK11057 239 GIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA-----FG--MGINKPNVR 306 (607)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech-----hh--ccCCCCCcC
Confidence 689999999999988887764 678888999877654443 334567899999973 22 457778888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 307 ~VI~ 310 (607)
T PRK11057 307 FVVH 310 (607)
T ss_pred EEEE
Confidence 8774
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.08 E-value=4.3 Score=34.04 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=74.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc-hHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE-VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|.+|+-+-.+|....+++. +|..++..+.+... ..+....+.++..+|+|+|- .+. ..+-+.+++..
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~---~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILE--RGVTfp~vdV~ 377 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKK---LPKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILE--RGVTFPNVDVF 377 (441)
T ss_pred EEEEecchHHHHHHHHHHHhh---CCccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhh--cccccccceEE
Confidence 589999999999998888554 33557677776554 44666677678899999986 444 46788999999
Q ss_pred EEeccccccccccHHH-HHHHHHhCC-CCCcEEEEeecCchHHHH
Q 026925 81 VLDEADRLLDMGFQKQ-ISYIISRLP-KLRRTGLFSATQTEAVEE 123 (230)
Q Consensus 81 VvDEad~l~~~~~~~~-~~~i~~~l~-~~~q~i~~SAt~~~~~~~ 123 (230)
|++--|.++.....-. --+.-+.+. +.--+++|.--.+..+..
T Consensus 378 Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~ 422 (441)
T COG4098 378 VLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQ 422 (441)
T ss_pred EecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHH
Confidence 9998888765432211 112222222 234567776666655443
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.79 Score=43.45 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=57.4
Q ss_pred EEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccCCcc
Q 026925 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFRNL 77 (230)
Q Consensus 4 il~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~~~l 77 (230)
|++.+-=||..=..++..+...+ |+.|+++..+.+..+.... -.|||.+||..-|- ++|+.+ ...-.+.+
T Consensus 184 vVTvNDYLA~RDaewm~p~y~fl-GLtVg~i~~~~~~~~Rr~a---Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~ 259 (1025)
T PRK12900 184 VVTVNDYLAQRDKEWMNPVFEFH-GLSVGVILNTMRPEERREQ---YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDF 259 (1025)
T ss_pred EEeechHhhhhhHHHHHHHHHHh-CCeeeeeCCCCCHHHHHHh---CCCcceecCCCccccccchhccccchhhhhccCC
Confidence 55666668877778888888887 9999998776555444333 46999999998752 233321 11124778
Q ss_pred cEEEEecccccc
Q 026925 78 EILVLDEADRLL 89 (230)
Q Consensus 78 ~~lVvDEad~l~ 89 (230)
.+.||||+|.++
T Consensus 260 ~faIVDEvDSvL 271 (1025)
T PRK12900 260 YFAIVDEVDSVL 271 (1025)
T ss_pred ceEEEechhhhh
Confidence 899999999886
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=88.68 E-value=1.1 Score=35.41 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=45.2
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
.+..+++.+.+.+...... -.-.+.+.+++++|++|.+... .+...+.++++.+......++++++.++
T Consensus 72 ~~~~v~y~~~~~~~~~~~~-~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 72 RGEPAVYLPLAELLDRGPE-LLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred CCCcEEEeeHHHHHhhhHH-HHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4678888888776543211 0112556789999999977543 3466678888777655455666777654
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.27 E-value=5.6 Score=36.90 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhhhCCCceEEEEEcCcchH-----HHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccc
Q 026925 12 SSQIYHVAQPFISTLPDVKSVLLVGGVEVK-----ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD 86 (230)
Q Consensus 12 a~q~~~~~~~l~~~~~~~~v~~~~~~~~~~-----~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad 86 (230)
.+++..++.++ +|+.++.-+.++.... .....+.++++||+|||+ ++. +..++.++.++.|=.+|
T Consensus 493 terieeeL~~~---FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQ-----mia--KG~~fp~vtLVgvl~aD 562 (730)
T COG1198 493 TERIEEELKRL---FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQ-----MIA--KGHDFPNVTLVGVLDAD 562 (730)
T ss_pred HHHHHHHHHHH---CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecch-----hhh--cCCCcccceEEEEEech
Confidence 45566666665 6788998888876643 234455578899999998 443 45889999999999999
Q ss_pred cccccc
Q 026925 87 RLLDMG 92 (230)
Q Consensus 87 ~l~~~~ 92 (230)
..+...
T Consensus 563 ~~L~~~ 568 (730)
T COG1198 563 TGLGSP 568 (730)
T ss_pred hhhcCC
Confidence 988654
|
|
| >cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.93 Score=30.10 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
...++++++|++-..+...+..|... |+ ++..+.||+.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~----G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLAL----GGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHc----CCCCEEEeCCCHH
Confidence 35678999999988889999999777 88 6888999875
|
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. |
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=3.7 Score=34.99 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=52.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|.++|++-|..+...+... ++.+..++|+.+..+... .+.++..+|+|+|- .+. ..+++.+++
T Consensus 270 ~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~--~GiDip~v~ 337 (401)
T PTZ00424 270 AIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLA--RGIDVQQVS 337 (401)
T ss_pred EEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----ccc--CCcCcccCC
Confidence 689999999888877766543 578888999877655443 33456799999996 333 568889999
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-.
T Consensus 338 ~VI~~~ 343 (401)
T PTZ00424 338 LVINYD 343 (401)
T ss_pred EEEEEC
Confidence 988533
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=87.86 E-value=3.6 Score=37.30 Aligned_cols=69 Identities=12% Similarity=0.240 Sum_probs=51.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+..|.++...+... ++++..++++.+..+... .+.++..+|||+|-. +. ..++..+++
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~-----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a-----~~--~GID~p~v~ 294 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQ-----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNA-----FG--MGIDKPNVR 294 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEech-----hh--ccCcCCCCC
Confidence 589999999999988887653 678888998877654443 334578999999973 22 456778888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 295 ~VI~ 298 (591)
T TIGR01389 295 FVIH 298 (591)
T ss_pred EEEE
Confidence 8774
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=3 Score=39.35 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=53.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH---hcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~---~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++|++.=+.++.+.+++... .++.+..++|+.+..++...+. ++...|||+|. ... ..+++.+++
T Consensus 215 iLVFlpg~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IAE--rsLtIp~V~ 285 (812)
T PRK11664 215 LLLFLPGVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IAE--TSLTIEGIR 285 (812)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hHH--hcccccCce
Confidence 69999999999998888886322 2678899999988877776663 24578999998 333 567788888
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 286 ~VI 288 (812)
T PRK11664 286 LVV 288 (812)
T ss_pred EEE
Confidence 665
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.85 E-value=3.4 Score=34.96 Aligned_cols=117 Identities=13% Similarity=0.142 Sum_probs=72.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|+|.||.-|..++..++.- |-.|.+++|+-...+... .+..+...++|+|.-. . ..++...+
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~-----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~-----A--RGiDv~qV 399 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAE-----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC-----A--RGIDVAQV 399 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhc-----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh-----h--cccccceE
Confidence 5799999999999999888875 567888888766554433 3345678999999843 2 46788888
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCC----cEEEEe---ecCchHHHHHHHhccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLR----RTGLFS---ATQTEAVEELSKAGLRN 131 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~----q~i~~S---At~~~~~~~~~~~~~~~ 131 (230)
.++|= .|.-.+.+-.++.+..+.++.+.- .-++++ .-++.++......++..
T Consensus 400 s~VvN--ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~ 458 (477)
T KOG0332|consen 400 SVVVN--YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNM 458 (477)
T ss_pred EEEEe--cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhh
Confidence 88773 332223222344444454454322 223332 33445555555666643
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=87.53 E-value=3.6 Score=39.04 Aligned_cols=97 Identities=13% Similarity=0.048 Sum_probs=60.6
Q ss_pred CcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh--C
Q 026925 108 RRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK--N 185 (230)
Q Consensus 108 ~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~ 185 (230)
..+.++|.|......++...| +-++. .+++.. +........ .+.....+|+..+..-+.. .
T Consensus 504 ~kl~GmTGTa~~e~~Ef~~iY-~l~v~-~iPt~k--------------p~~r~d~~d-~iy~t~~~k~~ai~~ei~~~~~ 566 (970)
T PRK12899 504 EKLAGMTGTAITESREFKEIY-NLYVL-QVPTFK--------------PCLRIDHND-EFYMTEREKYHAIVAEIASIHR 566 (970)
T ss_pred chhcccCCCCHHHHHHHHHHh-CCCEE-ECCCCC--------------CceeeeCCC-cEecCHHHHHHHHHHHHHHHHh
Confidence 367788999876666665544 32232 222220 111111111 2233445777766665543 2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
.++|+||-|.|.+..+.++..|.+. |++..++...-
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~----gi~h~vLNak~ 602 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQN----RIEHTVLNAKN 602 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc----CCcceecccch
Confidence 6689999999999999999999988 88877776653
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=87.45 E-value=1.7 Score=39.37 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=57.1
Q ss_pred CeEEEeCChhhH-----HHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHhcCCcEEEEcChHHHHHHhhCCcc
Q 026925 1 MGMIISPTRELS-----SQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVL 72 (230)
Q Consensus 1 ~~lil~Pt~eLa-----~q~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~ 72 (230)
||.+|||--|=. .-....+..+...+|+.++..++|.-+.. +-...+.++..||+|+|- .+. -.+
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT-----VIE--VGV 547 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT-----VIE--VGV 547 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee-----EEE--ecc
Confidence 577888864322 12334455555567788999999976544 444455567899999986 333 567
Q ss_pred cCCcccEEEEeccccc
Q 026925 73 DFRNLEILVLDEADRL 88 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l 88 (230)
+..+..+.||..|+++
T Consensus 548 dVPnATvMVIe~AERF 563 (677)
T COG1200 548 DVPNATVMVIENAERF 563 (677)
T ss_pred cCCCCeEEEEechhhh
Confidence 8899999999999997
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=87.03 E-value=2.4 Score=41.55 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=52.5
Q ss_pred eEEEeCCh---hhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCc-c
Q 026925 2 GMIISPTR---ELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN-L 77 (230)
Q Consensus 2 ~lil~Pt~---eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~-l 77 (230)
+||.+||+ +-|.++...+++. ++++..++|+.+ ....+.+.+++.+|+|||-. ..+.+. ..+++.+ +
T Consensus 329 ~IVFv~t~~~~~~a~~l~~~L~~~-----g~~a~~lhg~~~-~~~l~~Fr~G~~~vLVata~-~tdv~a--RGIDip~~V 399 (1171)
T TIGR01054 329 GIVYVSIDYGKEKAEEIAEFLENH-----GVKAVAYHATKP-KEDYEKFAEGEIDVLIGVAS-YYGTLV--RGLDLPERV 399 (1171)
T ss_pred EEEEEeccccHHHHHHHHHHHHhC-----CceEEEEeCCCC-HHHHHHHHcCCCCEEEEecc-ccCccc--ccCCCCccc
Confidence 68999999 8888887777654 688899999875 35667777889999999741 111222 4577776 7
Q ss_pred cEEEE
Q 026925 78 EILVL 82 (230)
Q Consensus 78 ~~lVv 82 (230)
+++|.
T Consensus 400 ~~vI~ 404 (1171)
T TIGR01054 400 RYAVF 404 (1171)
T ss_pred cEEEE
Confidence 88887
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=87.00 E-value=2.8 Score=38.61 Aligned_cols=70 Identities=16% Similarity=0.309 Sum_probs=51.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH-HHHH-HhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD-VKKI-EEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~-~~~l-~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
+||.+|+++-+..+.+.+++.. +++.+..++|+.+..++ ...+ .+++..|+|+|. ... ..++..++.+
T Consensus 398 iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd-----IAE--RGIDIp~V~~ 467 (675)
T PHA02653 398 GIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP-----YLE--SSVTIRNATH 467 (675)
T ss_pred EEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC-----hhh--ccccccCeeE
Confidence 6999999998888777776543 36788999998776533 2444 346789999998 333 5688888877
Q ss_pred EE
Q 026925 80 LV 81 (230)
Q Consensus 80 lV 81 (230)
+|
T Consensus 468 VI 469 (675)
T PHA02653 468 VY 469 (675)
T ss_pred EE
Confidence 76
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=86.97 E-value=5.2 Score=38.13 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=54.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhh-CCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFIST-LPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~-~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+||+++|+..|..++..+++.... +.+..+...+|+.+..+.. +.+.++...++|+|.- +. ..+++.++
T Consensus 287 ~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le--~GIDip~V 359 (876)
T PRK13767 287 TLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LE--LGIDIGYI 359 (876)
T ss_pred EEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HH--hcCCCCCC
Confidence 689999999999998888875431 1135677788887765443 3455678899999983 32 35778888
Q ss_pred cEEEEec
Q 026925 78 EILVLDE 84 (230)
Q Consensus 78 ~~lVvDE 84 (230)
+++|.-.
T Consensus 360 d~VI~~~ 366 (876)
T PRK13767 360 DLVVLLG 366 (876)
T ss_pred cEEEEeC
Confidence 8888543
|
|
| >cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=86.86 E-value=0.76 Score=32.18 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc--eEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL--SLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~--~~~~lh~~~~ 226 (230)
.+.+++++||++-.++...+..|... |+ ++..+.||+.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~----G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKEL----GLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHc----CCccceeeecchHH
Confidence 35678999999988999999999988 99 6899999874
|
This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=86.79 E-value=3.8 Score=38.63 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=53.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh---cCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE---EGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~---~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++|+++-+.++...+++... +++.+..++|+-+..++...+.. +...|||+|. ... ..+++.+++
T Consensus 212 iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAE--rgItIp~V~ 282 (819)
T TIGR01970 212 ILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAE--TSLTIEGIR 282 (819)
T ss_pred EEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHh--hcccccCce
Confidence 69999999999888888876432 26899999999888777776642 3468999997 222 567777787
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 283 ~VI 285 (819)
T TIGR01970 283 VVI 285 (819)
T ss_pred EEE
Confidence 665
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=86.70 E-value=1.5 Score=42.89 Aligned_cols=71 Identities=17% Similarity=0.438 Sum_probs=50.8
Q ss_pred eEEEeCChhh---HHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCc-c
Q 026925 2 GMIISPTREL---SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN-L 77 (230)
Q Consensus 2 ~lil~Pt~eL---a~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~-l 77 (230)
+||.+||+.- |..+.+.++.. ++++..++|+. ......+.++..+|+|||..- .+.+. ..+++.+ +
T Consensus 331 ~LIFv~t~~~~~~ae~l~~~L~~~-----gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~-tdv~a--RGIDiP~~I 400 (1176)
T PRK09401 331 GLIFVPSDKGKEYAEELAEYLEDL-----GINAELAISGF--ERKFEKFEEGEVDVLVGVASY-YGVLV--RGIDLPERI 400 (1176)
T ss_pred EEEEEecccChHHHHHHHHHHHHC-----CCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCC-CCcee--ecCCCCcce
Confidence 6899999655 87777776654 78999999987 445577778899999997421 11222 4567666 7
Q ss_pred cEEEE
Q 026925 78 EILVL 82 (230)
Q Consensus 78 ~~lVv 82 (230)
+++|.
T Consensus 401 ryVI~ 405 (1176)
T PRK09401 401 RYAIF 405 (1176)
T ss_pred eEEEE
Confidence 88876
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=86.50 E-value=27 Score=32.25 Aligned_cols=75 Identities=13% Similarity=0.318 Sum_probs=55.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|+++|+.-|..+...+... ++++..++|+.+..+... .+..++.+|+|||- .+. .++++.+++
T Consensus 449 viIf~~t~~~ae~L~~~L~~~-----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~--rGfdlp~v~ 516 (652)
T PRK05298 449 VLVTTLTKRMAEDLTDYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDIPEVS 516 (652)
T ss_pred EEEEeCCHHHHHHHHHHHhhc-----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHh--CCccccCCc
Confidence 789999999998887777654 678888888765443333 34456789999984 333 568899999
Q ss_pred EEEEeccccc
Q 026925 79 ILVLDEADRL 88 (230)
Q Consensus 79 ~lVvDEad~l 88 (230)
++|+=|++..
T Consensus 517 lVii~d~eif 526 (652)
T PRK05298 517 LVAILDADKE 526 (652)
T ss_pred EEEEeCCccc
Confidence 9998888754
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=86.15 E-value=6.9 Score=37.20 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhh
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPR 209 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~ 209 (230)
..+++|||++|.+..+.++..|..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~ 696 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNE 696 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhh
Confidence 446999999999999999999976
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3 | Back alignment and domain information |
|---|
Probab=85.99 E-value=1.3 Score=29.29 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
...++++||.+-..+...+..|... |+++..+.||+.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~----G~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQM----GWEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHc----CCEEEEecCcHH
Confidence 3568999999987888888888777 999888899875
|
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=85.97 E-value=0.99 Score=35.05 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=31.9
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEe
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~S 114 (230)
...-++|+||+|.=+|......+..++..+.+..|+++.|
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~T 196 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITT 196 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 4456899999999999988888888888888889999864
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=85.97 E-value=1.3 Score=30.31 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=30.8
Q ss_pred CCCeEEEEcCch--hHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTC--ACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~--~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+..++++||++- ..+...+..|... |+++..+.||+.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~----G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAEL----GFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHc----CCeEEEecCCHH
Confidence 567999999975 4788888999888 999889998874
|
This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. |
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=85.86 E-value=0.79 Score=34.60 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=37.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|-+|+.+=++.+++.+..-.... +.+. ...........+...+..|-+-.|..+...- ...+.+|
T Consensus 29 I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~----~~~~~~~~~~~~~~~~~~i~f~~Pd~l~~~~--------~~~Dlli 95 (177)
T PF05127_consen 29 ILVTAPSPENVQTLFEFAEKGLKAL-GYKE----EKKKRIGQIIKLRFNKQRIEFVAPDELLAEK--------PQADLLI 95 (177)
T ss_dssp EEEE-SS--S-HHHHHCC-------------------------------CCC--B--HHHHCCT------------SCEE
T ss_pred EEEecCCHHHHHHHHHHHHhhcccc-cccc----ccccccccccccccccceEEEECCHHHHhCc--------CCCCEEE
Confidence 5777899998887777766554433 2222 0000001111121235667777776532221 2347999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
||||=.+ -.+.+..++ +....++||.|+.
T Consensus 96 VDEAAaI----p~p~L~~ll----~~~~~vv~stTi~ 124 (177)
T PF05127_consen 96 VDEAAAI----PLPLLKQLL----RRFPRVVFSTTIH 124 (177)
T ss_dssp ECTGGGS-----HHHHHHHH----CCSSEEEEEEEBS
T ss_pred EechhcC----CHHHHHHHH----hhCCEEEEEeecc
Confidence 9999976 234444443 2334567788874
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=85.68 E-value=1.9 Score=28.85 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+.++++|+|.+=.++...+..|... |++ +..+.||+.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~----G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKER----GFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHh----CCcceeeechhHH
Confidence 46679999999987888888888877 995 888988874
|
This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=85.64 E-value=5.2 Score=31.24 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=61.7
Q ss_pred EeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc--hHHHHHHH----Hh--cCCcEEEEcChHHHHHHhh---CCcc-
Q 026925 5 ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE--VKADVKKI----EE--EGANLLIGTPGRLYDIMER---MDVL- 72 (230)
Q Consensus 5 l~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~--~~~~~~~l----~~--~~~~Iiv~TP~~l~~~l~~---~~~~- 72 (230)
..+..++|......+..-... ......++|+.- +..-...+ .+ .+..|+..+.+.+...+.. .+..
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~--~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~ 89 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGE--RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIE 89 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTT--SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHH
T ss_pred cCCcHHHHHHHHHHHHhcCCC--CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccch
Confidence 445666666544444332111 234556666442 33222222 11 3577999998887553321 0211
Q ss_pred ----cCCcccEEEEeccccccccc-cHHHHHHHHHhCCC-CCcEEEEeecCchH
Q 026925 73 ----DFRNLEILVLDEADRLLDMG-FQKQISYIISRLPK-LRRTGLFSATQTEA 120 (230)
Q Consensus 73 ----~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~-~~q~i~~SAt~~~~ 120 (230)
.+.+.+++++|++|.+.... ....+.++++.+.. ..++++.|...|..
T Consensus 90 ~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 90 EFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 26789999999999886543 45666667766644 44666655555543
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=85.55 E-value=1.9 Score=37.94 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=54.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-CCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-~~~~~~~~l~~l 80 (230)
+++.+++++-|..+++.++.+....|..+... .. ..+...+-.|.....+.....+.. .+..+=.+..++
T Consensus 57 i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~--~~-------~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~ 127 (477)
T PF03354_consen 57 IYCAANTRDQAKIVFDEAKKMIEASPELRKRK--KP-------KIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLA 127 (477)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhChhhccch--hh-------hhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceE
Confidence 57899999999999999999987765433211 00 000001112332222222222211 122232356899
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~ 113 (230)
|+||+|..-+......++.-+... .+.+++..
T Consensus 128 i~DE~h~~~~~~~~~~l~~g~~~r-~~pl~~~I 159 (477)
T PF03354_consen 128 IFDELHAHKDDELYDALESGMGAR-PNPLIIII 159 (477)
T ss_pred EEeCCCCCCCHHHHHHHHhhhccC-CCceEEEE
Confidence 999999886644444444444443 34454444
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=85.39 E-value=1.3 Score=29.46 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=31.2
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
...++++++|++-..+...+..|.+. |+ ++..+.||+.
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~----g~~~v~~l~gG~~ 90 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAI----SAGEAYVLEGGLD 90 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHc----CCccEEEeeCCHH
Confidence 34579999999988888999999887 77 6777888863
|
This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=85.02 E-value=3.2 Score=28.92 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=19.4
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCC-CCcEEEE
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLF 113 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~-~~q~i~~ 113 (230)
..+|+||+|++.+ .+.+..+.+.... ..+++++
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~ 122 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLV 122 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEE
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEE
Confidence 7899999999642 4444444333333 4445544
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=84.82 E-value=4.2 Score=34.10 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=48.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH-------HHHHhcCCcEEEEcChHHHHHHhhCCcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV-------KKIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-------~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
++|+++|++-|..+++.+++.. ++..+..++|+.+..+.. +.+.++...|+|+|. .+. ..+++
T Consensus 225 ~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-----~~~--~GiDi 294 (358)
T TIGR01587 225 IAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-----VIE--ASLDI 294 (358)
T ss_pred EEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-----chh--ceecc
Confidence 7999999999999888887653 235788889887654432 234446788999997 222 34555
Q ss_pred CcccEEEEe
Q 026925 75 RNLEILVLD 83 (230)
Q Consensus 75 ~~l~~lVvD 83 (230)
+++++|.+
T Consensus 295 -~~~~vi~~ 302 (358)
T TIGR01587 295 -SADVMITE 302 (358)
T ss_pred -CCCEEEEc
Confidence 35666654
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.45 E-value=6.2 Score=32.20 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=51.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
|++|+|.|+.-+......++.- +..+.+.+|+-+.++..+ .+.+++..|+++|-- .. ..++...+
T Consensus 268 QavIFcnTk~kVdwLtekm~~~-----nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDV-----wa--RGiDv~qV 335 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDV-----WA--RGIDVQQV 335 (400)
T ss_pred eEEEEecccchhhHHHHHHHhh-----CceeeeccCCcchhHHHHHHHHhhcCCceEEEEech-----hh--ccCCccee
Confidence 6899999999998777666653 578889999877665544 334577899999863 22 56777888
Q ss_pred cEEE
Q 026925 78 EILV 81 (230)
Q Consensus 78 ~~lV 81 (230)
.++|
T Consensus 336 slvi 339 (400)
T KOG0328|consen 336 SLVI 339 (400)
T ss_pred EEEE
Confidence 8876
|
|
| >cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2 | Back alignment and domain information |
|---|
Probab=84.39 E-value=1.5 Score=29.93 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=30.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce--EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS--LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~--~~~lh~~~~ 226 (230)
+.++++|||.+-.++...+..|... |++ +..+.||++
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~----G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINA----GLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHC----CCCcceeEecCCHH
Confidence 4568999999988888888999887 984 788999875
|
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue. |
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.35 E-value=13 Score=33.25 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=56.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|.+-+.|-|.|++..+. .++++++..++|+-+.. +....+..+...++|+|- ++.+ .+++.++.
T Consensus 390 ~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd-----ll~R--GiDf~gvn 458 (593)
T KOG0344|consen 390 VLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD-----LLAR--GIDFKGVN 458 (593)
T ss_pred eEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh-----hhhc--cccccCcc
Confidence 5788999999999888887 24489999999985543 333445457789999986 5654 49999999
Q ss_pred EEEEeccc
Q 026925 79 ILVLDEAD 86 (230)
Q Consensus 79 ~lVvDEad 86 (230)
++|-++.-
T Consensus 459 ~VInyD~p 466 (593)
T KOG0344|consen 459 LVINYDFP 466 (593)
T ss_pred eEEecCCC
Confidence 99986655
|
|
| >cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=84.17 E-value=1.3 Score=29.83 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=31.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||++-..+...+..|... |++ +..+.||+.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~----G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSL----GYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHc----CCccceecCCcHH
Confidence 4679999999988999999999888 884 788888874
|
This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. |
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=84.05 E-value=2.5 Score=31.34 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=43.6
Q ss_pred CCcccEEEEeccccccccc--cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~--~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
....+++|+||+=..++.+ -.+.+..+++..|...-+|+.+-..|+.+..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 4678999999999887776 4667888888888888899988888888777765
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1 | Back alignment and domain information |
|---|
Probab=84.02 E-value=2 Score=28.33 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.5
Q ss_pred CCCeEEEEcCc--hhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMT--CACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t--~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.++++++|.+ +..+...+..|... |+ ++..+.||+.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~----G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSEL----GYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHc----CccCEEEccCCHH
Confidence 36799999998 44477888888887 87 5888999875
|
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue. |
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=83.91 E-value=7.1 Score=36.51 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=56.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhC-C--CceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTL-P--DVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~-~--~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
.+||.++||..|..++..++...... + +.++....|+...++... .+.++..+++|+|.. +. ..+++
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~-----le--rGIDI 345 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNA-----LE--LGVDI 345 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECch-----Hh--ccCCc
Confidence 47999999999999999888754321 1 356777888877654433 344677899999973 33 46888
Q ss_pred CcccEEEEecc
Q 026925 75 RNLEILVLDEA 85 (230)
Q Consensus 75 ~~l~~lVvDEa 85 (230)
.+++++|.-..
T Consensus 346 ~~vd~VI~~~~ 356 (742)
T TIGR03817 346 SGLDAVVIAGF 356 (742)
T ss_pred ccccEEEEeCC
Confidence 89998886654
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=83.82 E-value=2.6 Score=33.27 Aligned_cols=70 Identities=6% Similarity=-0.038 Sum_probs=39.2
Q ss_pred hcCCcEEEEcChHHHHHHhhCCcccCCcccEEEEeccccccccc-cHHHHHHHHHhCCCC-CcEEEEeecCch
Q 026925 49 EEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMG-FQKQISYIISRLPKL-RRTGLFSATQTE 119 (230)
Q Consensus 49 ~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~~~-~q~i~~SAt~~~ 119 (230)
+.+..+++.+...+...+.. ..-.+.+.+.+|+||+|.+..+. ....+-++.+..... .++++.|...+.
T Consensus 67 ~~~~~~~y~~~~~~~~~~~~-~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 67 QAGRSSAYLPLQAAAGRLRD-ALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPD 138 (233)
T ss_pred HcCCcEEEEeHHHhhhhHHH-HHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChh
Confidence 35667777776654433322 11135677899999999886443 334455555554333 345554444343
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=83.68 E-value=2.3 Score=29.98 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=26.5
Q ss_pred cccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
.-.++++||+|.+-+ +...+..+.+.- .+.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 556899999999854 467777777655 45666665444
|
|
| >cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=83.67 E-value=1.9 Score=28.43 Aligned_cols=37 Identities=11% Similarity=0.279 Sum_probs=32.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
..++++++|++-..+...+..|... |+ ++..+.||+.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~----G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREA----GFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHc----CCceEEEcCCCHH
Confidence 5679999999999999999999988 88 5788888864
|
Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=83.60 E-value=2.6 Score=33.15 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=40.9
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccccc-ccHHHHHHHHHhCCC-CCcEEEEeecCchH
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYIISRLPK-LRRTGLFSATQTEA 120 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~-~~q~i~~SAt~~~~ 120 (230)
.+..+.+.+.......... -.-.+.+.+.+++||+|.+... .+...+..+++.+.. ..+++++|++.++.
T Consensus 66 ~~~~~~y~~~~~~~~~~~~-~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 66 NQRTAIYIPLSKSQYFSPA-VLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCCeEEeeHHHhhhhhHH-HHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 3456777766532222111 0112567889999999988633 344566666666544 34566777776543
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=83.52 E-value=12 Score=35.93 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=63.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCC---CceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcc---
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLP---DVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVL--- 72 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~--- 72 (230)
|||++|-.-+-+ +++.|.++...+. .+.|..+..-...++.... +.+.| -|.|.-...+..+-.. ...
T Consensus 731 aLvV~PlNt~~N-W~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g-gVmIiGYdmyRnLa~g-r~vk~r 807 (1567)
T KOG1015|consen 731 ALVVCPLNTALN-WMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG-GVMIIGYDMYRNLAQG-RNVKSR 807 (1567)
T ss_pred EEEEcchHHHHH-HHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC-CEEEEehHHHHHHhcc-cchhhh
Confidence 799999776554 5777777765431 3555555443333333332 22233 4666555554443322 111
Q ss_pred ----------cCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHH
Q 026925 73 ----------DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (230)
Q Consensus 73 ----------~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~ 121 (230)
--..-+++|-||+|.+-+. ...+...+..+...+++++....+-+++
T Consensus 808 k~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irtkRRI~LTGTPLQNNL 864 (1567)
T KOG1015|consen 808 KLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRTKRRIILTGTPLQNNL 864 (1567)
T ss_pred HHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHhheeEEeecCchhhhh
Confidence 1134589999999977544 3455556666655666666544444443
|
|
| >cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=83.43 E-value=1.4 Score=31.11 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCCeEEEEcC-chhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFM-TCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~-t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.++++|||+ +-..+...+..|... |+++..+.||+.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~----G~~v~~L~GG~~ 122 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESL----GIDVPLLEGGYK 122 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHc----CCceeEeCCcHH
Confidence 5679999997 566778888888777 999999999975
|
This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=19 Score=31.57 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=43.0
Q ss_pred cCCcEEEEcChHHHHHHhh---CCc---c--cCCcccEEEEeccccccccc-cHHHHHHHHHhCC-CCCcEEEEeecCch
Q 026925 50 EGANLLIGTPGRLYDIMER---MDV---L--DFRNLEILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTE 119 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~---~~~---~--~~~~l~~lVvDEad~l~~~~-~~~~~~~i~~~l~-~~~q~i~~SAt~~~ 119 (230)
.+..+++.+.+.+...+.. .+. + ...+.+.+++||+|.+.... ....+..+++.+. ...|+++.|.+.+.
T Consensus 168 ~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~ 247 (445)
T PRK12422 168 SGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQ 247 (445)
T ss_pred cCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHH
Confidence 4678999988776543321 011 1 14678899999999876533 3445555555442 34566665544454
Q ss_pred HHH
Q 026925 120 AVE 122 (230)
Q Consensus 120 ~~~ 122 (230)
.+.
T Consensus 248 ~l~ 250 (445)
T PRK12422 248 DLK 250 (445)
T ss_pred HHh
Confidence 443
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=83.07 E-value=4.2 Score=32.06 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=48.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEE--EcCcchH----HHHHHHH---hcCCcEEEEcChHHHHHHhh----
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLL--VGGVEVK----ADVKKIE---EEGANLLIGTPGRLYDIMER---- 68 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~--~~~~~~~----~~~~~l~---~~~~~Iiv~TP~~l~~~l~~---- 68 (230)
+-+++| +.|..|.+..++.-.+..-+-++..+ ..+.... +....+. ...-.|+++||+.++.+.-.
T Consensus 73 vrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~ 151 (229)
T PF12340_consen 73 VRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLER 151 (229)
T ss_pred EEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHH
Confidence 456777 56888988888877665434344433 2322221 1121111 13345999999998764311
Q ss_pred --CCcc-----------cCCcccEEEEeccccccc
Q 026925 69 --MDVL-----------DFRNLEILVLDEADRLLD 90 (230)
Q Consensus 69 --~~~~-----------~~~~l~~lVvDEad~l~~ 90 (230)
++.. .+.+-..=|+||+|..++
T Consensus 152 l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 152 LQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0111 123344568888888765
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.85 E-value=2 Score=39.51 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHH----hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 172 DEKPSQLVDLLI----KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 172 ~~k~~~l~~ll~----~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
..|.+.+.+.+- .....++||||.+++.|..+-++|... ...|+++..+.|.
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGIKAEIFIGQ 449 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhcccccceeeec
Confidence 457777776664 336679999999999999999999852 2567788777764
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=82.75 E-value=2.2 Score=40.81 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=55.1
Q ss_pred EEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCc-chHHHHHHHHhcCCcEEEEcChHHH-HHHhhC-----CcccCCc
Q 026925 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV-EVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFRN 76 (230)
Q Consensus 4 il~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~-----~~~~~~~ 76 (230)
|++.+-=||..=..++..+...+ |+.++++.... +..+.... -.|||..||...|- ++|+.+ ...-.+.
T Consensus 215 vVTVNDYLA~RDaewmgply~fL-GLsvg~i~~~~~~~~~rr~a---Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~ 290 (1112)
T PRK12901 215 VVTVNDYLAKRDSEWMGPLYEFH-GLSVDCIDKHQPNSEARRKA---YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRK 290 (1112)
T ss_pred EEEechhhhhccHHHHHHHHHHh-CCceeecCCCCCCHHHHHHh---CCCcceecCCCccccccchhccccchHhhhCcC
Confidence 56666678877777888888777 99999886633 33332222 46999999998752 233321 1122466
Q ss_pred ccEEEEecccccc
Q 026925 77 LEILVLDEADRLL 89 (230)
Q Consensus 77 l~~lVvDEad~l~ 89 (230)
+.+.||||+|.++
T Consensus 291 ~~fAIVDEvDSIL 303 (1112)
T PRK12901 291 HNYAIVDEVDSVL 303 (1112)
T ss_pred CceeEeechhhhh
Confidence 8899999999886
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=82.68 E-value=4.3 Score=41.28 Aligned_cols=71 Identities=24% Similarity=0.314 Sum_probs=47.5
Q ss_pred eEEEeCChhhH---HHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCc-c
Q 026925 2 GMIISPTRELS---SQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN-L 77 (230)
Q Consensus 2 ~lil~Pt~eLa---~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~-l 77 (230)
+||.+||+.-+ .++...+.. . ++++..++++ .....+.+.++..+|+|||-.- ...+. ..+++.+ +
T Consensus 333 gIVF~~t~~~~e~ae~la~~L~~---~--Gi~a~~~h~~--R~~~l~~F~~G~~~VLVaT~s~-~gvaa--RGIDiP~~V 402 (1638)
T PRK14701 333 GLIFVPIDEGAEKAEEIEKYLLE---D--GFKIELVSAK--NKKGFDLFEEGEIDYLIGVATY-YGTLV--RGLDLPERI 402 (1638)
T ss_pred eEEEEeccccchHHHHHHHHHHH---C--CCeEEEecch--HHHHHHHHHcCCCCEEEEecCC-CCeeE--ecCccCCcc
Confidence 68999998765 555555544 2 7899888886 3455677778999999999521 11111 3466655 7
Q ss_pred cEEEE
Q 026925 78 EILVL 82 (230)
Q Consensus 78 ~~lVv 82 (230)
+++|.
T Consensus 403 ryvi~ 407 (1638)
T PRK14701 403 RFAVF 407 (1638)
T ss_pred CEEEE
Confidence 88876
|
|
| >cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein | Back alignment and domain information |
|---|
Probab=82.34 E-value=2.9 Score=26.75 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=32.4
Q ss_pred hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 184 KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 184 ~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
.....+++++|++-..+..++..|... |+ ++..+-||+.
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~----G~~~v~~l~gG~~ 86 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKA----GGTNVYNLEGGML 86 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHh----CcccEEEecCChh
Confidence 346679999999999999999999988 66 5777888874
|
The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.15 E-value=1.3 Score=40.48 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=30.2
Q ss_pred cCCcEEEEcChHHHHHHhhCCccc--CCcccEEEEeccccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLD--FRNLEILVLDEADRLLD 90 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~--~~~l~~lVvDEad~l~~ 90 (230)
..++++|+++..+..-... .... +..-..+|+||||++.+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~-~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVAL-EESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHh-hhhhccCCcccEEEEeccccchH
Confidence 4689999999998775443 2222 45678999999999987
|
|
| >cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain | Back alignment and domain information |
|---|
Probab=82.04 E-value=1.6 Score=30.15 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 177 QLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 177 ~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+...+... +.+++++||++-..+...+..|... |++ +..+-||+.
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~----G~~~v~~l~GG~~ 114 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELL----GYKNVRLYDGSWS 114 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHc----CCCCeeeeCChHH
Confidence 344444432 5679999999988899999999887 884 778888864
|
TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. |
| >cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain | Back alignment and domain information |
|---|
Probab=81.30 E-value=2.7 Score=29.15 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=31.0
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMT-CACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t-~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+++++||++ -..+...+..|... |++ +..+-||+.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~----G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYF----GHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHc----CCCCEEEecCCHH
Confidence 56799999999 58888889999888 875 888888874
|
TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction. |
| >cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain | Back alignment and domain information |
|---|
Probab=81.24 E-value=1.8 Score=28.96 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=30.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..++++|||++-..+...+..|... |++ +..+-||+.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~----G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDM----GLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc----ChHHhEeecCcHH
Confidence 4579999999877888888999877 886 778888764
|
This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. |
| >cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=81.24 E-value=2.6 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||++-..+...+..|.+. |+ ++..+.||+.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~----G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQ----GFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHc----CCccEEEecCCHH
Confidence 4679999999988899999999887 88 4788998874
|
Subgroup 2 includes uncharacterized putative rhodanese-related domains. |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=81.05 E-value=10 Score=36.09 Aligned_cols=75 Identities=13% Similarity=0.261 Sum_probs=48.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH-------HHH-HhcC---CcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV-------KKI-EEEG---ANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~-------~~l-~~~~---~~Iiv~TP~~l~~~l~~~~ 70 (230)
++|+++|.+-|+++++.+++... ++..+..+++.....+.. +.+ .+++ ..|+|+|. .+..
T Consensus 563 vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ-----ViE~-- 633 (878)
T PRK09694 563 VCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ-----VVEQ-- 633 (878)
T ss_pred EEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc-----chhh--
Confidence 68999999999999999986532 146788888886544331 122 1122 36999994 3432
Q ss_pred cccCCcccEEEEeccc
Q 026925 71 VLDFRNLEILVLDEAD 86 (230)
Q Consensus 71 ~~~~~~l~~lVvDEad 86 (230)
.+++ +++.+|-|-+-
T Consensus 634 GLDI-d~DvlItdlaP 648 (878)
T PRK09694 634 SLDL-DFDWLITQLCP 648 (878)
T ss_pred eeec-CCCeEEECCCC
Confidence 3444 46777777443
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=81.00 E-value=13 Score=29.26 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=37.5
Q ss_pred cCCcEEEEcChHHHHHHhhCCcccCCcccEEEEecccccccc-ccHHHHHHHHHhCCC--CCcEEEEeecCc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYIISRLPK--LRRTGLFSATQT 118 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~--~~q~i~~SAt~~ 118 (230)
.+..+.+.+.+........ -.-.+.+.+.+++||+|.+... .....+.++++.+.. ..++++ |++.+
T Consensus 72 ~~~~v~y~~~~~~~~~~~~-~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~ 141 (235)
T PRK08084 72 RGRAVGYVPLDKRAWFVPE-VLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRP 141 (235)
T ss_pred CCCeEEEEEHHHHhhhhHH-HHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCC
Confidence 4566777766653322211 0011345679999999988643 355666666666533 235555 55544
|
|
| >PRK05320 rhodanese superfamily protein; Provisional | Back alignment and domain information |
|---|
Probab=80.71 E-value=3.7 Score=33.01 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
.+.+++++||.+=.+|+..+..|++. |++ +..+.||+.
T Consensus 173 ~kdk~IvvyC~~G~Rs~~Aa~~L~~~----Gf~~V~~L~GGi~ 211 (257)
T PRK05320 173 LAGKTVVSFCTGGIRCEKAAIHMQEV----GIDNVYQLEGGIL 211 (257)
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHc----CCcceEEeccCHH
Confidence 36789999999999999999999988 995 888999874
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.42 E-value=3.2 Score=34.13 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=29.5
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEee
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SA 115 (230)
...+++|+||+|.+........+..+++..+...++++.+.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 45689999999988444445667777877777777776543
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=80.40 E-value=2.7 Score=32.40 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=21.9
Q ss_pred cCCcEEEEcChHHHHHHhhCCccc-C-CcccEEEEecccccc
Q 026925 50 EGANLLIGTPGRLYDIMERMDVLD-F-RNLEILVLDEADRLL 89 (230)
Q Consensus 50 ~~~~Iiv~TP~~l~~~l~~~~~~~-~-~~l~~lVvDEad~l~ 89 (230)
..++|+++|+..... ..+. . ..++++|||||-.+.
T Consensus 169 ~~~~vi~~T~~~~~~-----~~~~~~~~~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 169 KEADVIFTTLSSAAS-----PFLSNFKEKFDVVIVDEASQIT 205 (236)
T ss_dssp HT-SEEEEETCGGG------CCGTT-----SEEEETTGGGS-
T ss_pred ccccccccccccchh-----hHhhhhcccCCEEEEeCCCCcc
Confidence 568999999987622 2222 2 278999999999864
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=80.12 E-value=3.2 Score=31.25 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=43.4
Q ss_pred CCcccEEEEecccccccccc--HHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~--~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
-.+.+++|+||+-..++.++ .+++..+++..|....+|+..-..|+.+..++..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 35688999999998888773 5577788888888888999888888877777653
|
Alternate name: corrinoid adenosyltransferase. |
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.07 E-value=1.2 Score=41.83 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=46.9
Q ss_pred ccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCC
Q 026925 77 LEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN 131 (230)
Q Consensus 77 l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~ 131 (230)
--+.++||+|.-++..|+..+-.++..+....|+|. .|+-+++...+.+|++.
T Consensus 1120 APFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~--TTFRpEll~vAdKfygV 1172 (1200)
T KOG0964|consen 1120 APFYLFDEIDAALDAQYRTAVADLIKELSDSAQFIT--TTFRPELLSVADKFYGV 1172 (1200)
T ss_pred cchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEe--ecccHHHHHHHHhhhce
Confidence 347899999999999999999999999998999886 68889999999998763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 230 | ||||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 1e-23 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 1e-21 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 1e-21 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 5e-19 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 7e-19 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 9e-19 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 1e-17 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 2e-17 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 2e-17 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 3e-17 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 5e-17 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 6e-17 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 6e-16 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 8e-16 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 2e-15 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 2e-15 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 2e-15 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 2e-15 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 2e-15 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 2e-15 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 2e-15 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 3e-15 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 3e-15 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 4e-15 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 5e-15 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 1e-14 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 1e-14 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 3e-14 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 3e-14 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 2e-13 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 4e-13 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 5e-13 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 6e-13 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 6e-13 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 9e-13 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 1e-12 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 1e-12 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 1e-12 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 3e-11 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 1e-09 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 2e-09 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 2e-09 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 1e-08 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 1e-08 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 1e-08 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 1e-08 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 1e-08 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 2e-08 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 3e-07 |
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 3e-58
Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 28/240 (11%)
Query: 4 IISPTRELSSQIYHVAQ---PFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
I++PTR+L+ QI + L V LVGG + +A + K+ + N++I TPG
Sbjct: 151 IVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPG 210
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLR-------RTGLF 113
RL D++E+ FR ++ VLDEADRLL++GF+ + I L + +T LF
Sbjct: 211 RLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLF 270
Query: 114 SATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDE 173
SAT + V++L+ + + + K+ + + E
Sbjct: 271 SATLDDKVQKLANNIMNKKECLFLDTVDKNEPE-----------AHERIDQSVVISEKFA 319
Query: 174 KPSQLVDLLIK------NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
IK + + K II+ T + +L + K L ++ HGK+ Q
Sbjct: 320 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL-KNEFKKDLPILEFHGKITQ 378
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 7e-58
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 28/242 (11%)
Query: 2 GMIISPTRELSSQIYHVAQ---PFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTR+L+ QI + L V LVGG + +A + K+ + N++I T
Sbjct: 98 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIAT 157
Query: 59 PGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLR-------RTG 111
PGRL D++E+ FR ++ VLDEADRLL++GF+ + I L + +T
Sbjct: 158 PGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTL 217
Query: 112 LFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEP 171
LFSAT + V++L+ + + + K+ + + E
Sbjct: 218 LFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE-----------AHERIDQSVVISEK 266
Query: 172 DEKPSQLVDLLIK------NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225
IK + + K II+ T + +L + K L ++ HGK+
Sbjct: 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL-KNEFKKDLPILEFHGKI 325
Query: 226 KQ 227
Q
Sbjct: 326 TQ 327
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-53
Identities = 58/140 (41%), Positives = 91/140 (65%), Gaps = 3/140 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL+ Q + V + + D + L++GG ++K + ++I N+L+ TPGR
Sbjct: 100 VLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERIN--NINILVCTPGR 156
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
L M+ +L++LVLDEADR+LDMGF ++ +I LPK R+T LFSATQT++V
Sbjct: 157 LLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSV 216
Query: 122 EELSKAGLRNPVRVEVRAES 141
++L++ L+NP V V ++
Sbjct: 217 KDLARLSLKNPEYVWVHEKA 236
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 2e-48
Identities = 55/134 (41%), Positives = 87/134 (64%), Gaps = 3/134 (2%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I+SPTREL+ Q + V + ++ L++GG A+ +K+ G N+++ TPGRL
Sbjct: 130 LILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGN-GINIIVATPGRL 187
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D M+ ++NL+ LV+DEADR+LD+GF++++ II LP R+T LFSATQT VE
Sbjct: 188 LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVE 247
Query: 123 ELSKAGLRN-PVRV 135
+L++ L+ P+ V
Sbjct: 248 DLARISLKKEPLYV 261
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-46
Identities = 51/138 (36%), Positives = 90/138 (65%), Gaps = 2/138 (1%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QI + S++ V+S ++VGG++ + + + +++I TPGR
Sbjct: 114 ALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAK-KPHIIIATPGR 171
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
L D +E + R L+ LV+DEADR+L+M F+ ++ I+ +P+ R+T LFSAT T+ V
Sbjct: 172 LIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKV 231
Query: 122 EELSKAGLRNPVRVEVRA 139
++L +A L+NPV+ V +
Sbjct: 232 QKLQRAALKNPVKCAVSS 249
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 1e-42
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 22/194 (11%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+I+SPTREL+ QI++ A+ F +K ++ GG + + I G +++I TPG
Sbjct: 131 QVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITR-GCHVVIATPG 188
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIIS--RLPKLRRTGLFSATQT 118
RL D ++R + F + +VLDEADR+LDMGF + + I++ + +T +FSAT
Sbjct: 189 RLLDFVDR-TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP 247
Query: 119 EAVEELSKAGLRNPVRVEV-RAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQ 177
E ++ ++ L+N V V + V +Q + K S+
Sbjct: 248 EEIQRMAGEFLKNYVFVAIGIVGGACSDV----KQ----------TIYE--VNKYAKRSK 291
Query: 178 LVDLLIKNKSKKII 191
L+++L + I+
Sbjct: 292 LIEILSEQADGTIV 305
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-42
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 24/198 (12%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QIY A+ F S V+ ++ GG ++ ++ +E G +LL+ TPGR
Sbjct: 104 SLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADIGQQIRDLER-GCHLLVATPGR 161
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIIS----RLPKLRRTGLFSATQ 117
L D+MER + + LVLDEADR+LDMGF+ QI I+ +R T +FSAT
Sbjct: 162 LVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATF 220
Query: 118 TEAVEELSKAGLRNPVRVEV-RAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPS 176
+ ++ L++ L + + V R S S ++ Q + + E +K S
Sbjct: 221 PKEIQMLARDFLDEYIFLAVGRVGSTSENI----TQ----------KVVW--VEESDKRS 264
Query: 177 QLVDLLIKNKSKKIIIYF 194
L+DLL + + F
Sbjct: 265 FLLDLLNATGKDSLTLVF 282
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 3e-42
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL+SQI+ + ++ + ++L+ TP R
Sbjct: 101 ALIISPTRELASQIHRELIKISEGTG-FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNR 159
Query: 62 LYDIMER-MDVLDFRNLEILVLDEADRLLD---MGFQKQISYIISRL-PKLRRTGLFSAT 116
L ++++ +D ++E LV+DE+D+L + GF+ Q++ I R +FSAT
Sbjct: 160 LIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSAT 219
Query: 117 QTEAVEELSKAGLRNPVRVEV 137
VE+ K L N + V +
Sbjct: 220 FAYDVEQWCKLNLDNVISVSI 240
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 3e-41
Identities = 46/139 (33%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QI V + +GG V+ +++K++ E ++++GTPGR
Sbjct: 101 ALVLAPTRELAQQIQKVILA-LGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGR 159
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
++D++ R L + +++ VLDEAD +L GF+ QI I +L + L SAT V
Sbjct: 160 VFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDV 218
Query: 122 EELSKAGLRNPVRVEVRAE 140
E++K +R+P+R+ V+ E
Sbjct: 219 LEVTKKFMRDPIRILVKKE 237
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 8e-41
Identities = 54/148 (36%), Positives = 89/148 (60%), Gaps = 8/148 (5%)
Query: 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY 63
I++PTREL+ QI +Q F P ++S ++ GG + + +++++ G +LL+ TPGRL
Sbjct: 105 ILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQM-GCHLLVATPGRLV 162
Query: 64 DIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIIS--RLPKL--RRTGLFSATQTE 119
D +E+ + + +VLDEADR+LDMGF+ QI II +P R+T +FSAT +
Sbjct: 163 DFIEKNKI-SLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPK 221
Query: 120 AVEELSKAGLRNPVRVEV-RAESKSHHV 146
+++L+ L N + + V R S S +
Sbjct: 222 EIQKLAADFLYNYIFMTVGRVGSTSDSI 249
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 1e-40
Identities = 53/227 (23%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+++ TREL+ QI + F +P+VK + GG+ +K D + +++ ++++GTPGR
Sbjct: 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGR 138
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+ + L+ ++++ +LDE D++L+ + ++ + I P ++ +FSAT ++
Sbjct: 139 ILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE 197
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVD 180
+ + + +++P+ + V E+K T GL Y++ + +EK +L D
Sbjct: 198 IRPVCRKFMQDPMEIFVDDETKL--------------TLHGLQQYYVKLKDNEKNRKLFD 243
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
LL + +++I+ + L +L V ++ I +H M Q
Sbjct: 244 LLDVLEFNQVVIFVKSVQRCIA----LAQLLVEQNFPAIAIHRGMPQ 286
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 2e-40
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+ PTREL+ Q V + + ++ GG ++ D+ ++ E ++L+GTPGR
Sbjct: 92 ALIMVPTRELALQTSQVVRTL-GKHCGISCMVTTGGTNLRDDILRLNE-TVHILVGTPGR 149
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ D+ R V D + + ++DEAD++L F+ I I+S LP ++ LFSAT V
Sbjct: 150 VLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTV 208
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDL 181
+E L P + + E T G+ Y E +K L L
Sbjct: 209 KEFMVKHLHKPYEINLMEEL----------------TLKGITQYYAFVEERQKLHCLNTL 252
Query: 182 LIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227
K + + II+ + V+ L + S H +MKQ
Sbjct: 253 FSKLQINQAIIFCNSTNRVEL----LAKKITDLGYSCYYSHARMKQ 294
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 2e-40
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 28/230 (12%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QI V + +GG V+A+V+K++ E ++++GTPGR
Sbjct: 111 ALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 169
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
++D++ R L + +++ VLDEAD +L GF+ QI I +L + L SAT V
Sbjct: 170 VFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDV 228
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECE-PDEKPSQLVD 180
E++K +R+P+R+ V+ E + + Q Y+ E + K L D
Sbjct: 229 LEVTKKFMRDPIRILVKKEELT--LEGIRQF-------------YINVEREEWKLDTLCD 273
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAV-LKSL--SLIPLHGKMKQ 227
L + +I+ T VD+ L + + ++ +HG M Q
Sbjct: 274 LYETLTITQAVIFINTRRKVDW-------LTEKMHARDFTVSAMHGDMDQ 316
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 3e-40
Identities = 43/137 (31%), Positives = 80/137 (58%), Gaps = 4/137 (2%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
++++PTREL+ + + +KS+ + GG ++ I + G +++I TPG
Sbjct: 96 GMLVLTPTRELALHVEAECSKYSYK--GLKSICIYGGRNRNGQIEDISK-GVDIIIATPG 152
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+ + ++ R++ LV+DEAD++LDM F+ QI I+ + R+T + SAT +
Sbjct: 153 RLNDLQM-NNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDT 211
Query: 121 VEELSKAGLRNPVRVEV 137
V +L+ + L++P+ V V
Sbjct: 212 VRQLALSYLKDPMIVYV 228
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-39
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 30/230 (13%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QI V ++ D+K +GG D + + A +++GTPGR
Sbjct: 92 ALMLAPTRELALQIQKVVMA-LAFHMDIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGR 148
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
++D ++R +++ +LDEAD +L GF++QI I + LP + L SAT V
Sbjct: 149 VFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDV 207
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDE-KPSQLVD 180
E++ +RNPVR+ V+ + + + Q Y+ E +E K L D
Sbjct: 208 LEVTTKFMRNPVRILVKKDELT--LEGIKQF-------------YVNVEEEEYKYECLTD 252
Query: 181 LLIKNKSKKIIIYFMTCACVDYWGVVLPRLAV-LKSL--SLIPLHGKMKQ 227
L + +I+ T V+ L L++ ++ ++ + Q
Sbjct: 253 LYDSISVTQAVIFCNTRRKVEE-------LTTKLRNDKFTVSAIYSDLPQ 295
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-39
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QI V + D+K +GG D + + A +++GTPGR
Sbjct: 85 ALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGR 141
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
++D ++R +++ +LDEAD +L GF++QI I + LP + L SAT V
Sbjct: 142 VFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDV 200
Query: 122 EELSKAGLRNPVRVEVRAE 140
E++ +RNPVR+ V+ +
Sbjct: 201 LEVTTKFMRNPVRILVKKD 219
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 7e-39
Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+ ++++PTREL+ Q+ VA + +KS + GG ++ +E G + I TPG
Sbjct: 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLER-GVEICIATPG 161
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D +E + R LVLDEADR+LDMGF+ QI I+ ++ R+T ++SAT +
Sbjct: 162 RLIDFLEC-GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 220
Query: 121 VEELSKAGLRNPVRVEV 137
V +L++ L++ + + +
Sbjct: 221 VRQLAEDFLKDYIHINI 237
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-38
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPD---VKSVLLVGGVEVKADVKKIEEEGANLLIGT 58
+I +PTREL++QIYH P + + L+GG + + ++K+ +++IGT
Sbjct: 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNV-QPHIVIGT 133
Query: 59 PGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR+ D + LD ILV+DEAD +LDMGF + I +R+PK + +FSAT
Sbjct: 134 PGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIP 192
Query: 119 EAVEELSKAGLRNPVRVEVRAESKSHH 145
E ++ K + NP V V HH
Sbjct: 193 EKLKPFLKKYMENPTFVHVLEHHHHHH 219
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 7e-38
Identities = 46/139 (33%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I++PTREL+ QI + +V+ +GG V D++K++ G +++ GTPGR
Sbjct: 108 ALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGR 165
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
++D++ R L R +++LVLDEAD +L+ GF++QI + LP + L SAT +
Sbjct: 166 VFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEI 224
Query: 122 EELSKAGLRNPVRVEVRAE 140
E++ + +P+R+ V+ +
Sbjct: 225 LEMTNKFMTDPIRILVKRD 243
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 9e-38
Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ +SPT EL+ Q V + P++K V G +++ K ++IGTPG +
Sbjct: 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI----SEQIVIGTPGTV 221
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D ++ +D + +++ VLDEAD ++ G Q Q I LP+ + LFSAT ++V
Sbjct: 222 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 281
Query: 122 EELSKAGLRNPVRVEVRAE 140
+ ++ + +P ++++ E
Sbjct: 282 WKFAQKVVPDPNVIKLKRE 300
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-37
Identities = 41/139 (29%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I++PTRE++ QI+ V + ++ + +GG + D +++ ++ +G+PGR
Sbjct: 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK--KCHIAVGSPGR 152
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEA 120
+ ++E D L+ ++ + +LDEAD+LL+ G FQ+QI++I S LP ++ SAT E
Sbjct: 153 IKQLIEL-DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEF 211
Query: 121 VEELSKAGLRNPVRVEVRA 139
+ +R+P V + +
Sbjct: 212 LANALTKYMRDPTFVRLNS 230
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-37
Identities = 41/134 (30%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
M+I PTREL+ Q+ + + K + GG ++ D+ ++++ +++I TPGR
Sbjct: 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGR 132
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ D++++ V +++++VLDEAD+LL F + + II LPK R+ L+SAT +V
Sbjct: 133 ILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSV 191
Query: 122 EELSKAGLRNPVRV 135
++ + L P +
Sbjct: 192 QKFMNSHLEKPYEI 205
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-37
Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ +SPT EL+ Q V + P++K V G +++ K ++IGTPG +
Sbjct: 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI----SEQIVIGTPGTV 154
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D ++ +D + +++ VLDEAD ++ G Q Q I LP+ + LFSAT ++V
Sbjct: 155 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 214
Query: 122 EELSKAGLRNPVRVEVRAE 140
+ ++ + +P ++++ E
Sbjct: 215 WKFAQKVVPDPNVIKLKRE 233
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-37
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++++PTREL+ Q VA + P +K V + GG + + GA+ ++ TPGR
Sbjct: 76 LVLTPTRELALQ---VASELTAVAPHLKVVAVYGGTGYGKQKEALLR-GADAVVATPGRA 131
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D + + VLD +E+ VLDEAD +L MGF++++ ++S P R+T LFSAT +
Sbjct: 132 LDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAK 190
Query: 123 ELSKAGLRNPVRVEV 137
L++ ++NPV + V
Sbjct: 191 RLAERYMKNPVLINV 205
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 6e-37
Identities = 33/137 (24%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+++ TREL+ QI + F +P+VK + GG+ +K D + +++ ++++GTPGR
Sbjct: 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGR 144
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+ + L+ ++++ +LDE D++L+ + ++ + I P ++ +FSAT ++
Sbjct: 145 ILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE 203
Query: 121 VEELSKAGLRNPVRVEV 137
+ + + +++P+ + V
Sbjct: 204 IRPVCRKFMQDPMEIFV 220
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 8e-37
Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ +SPT EL+ Q V + P++K V G +++ K ++IGTPG +
Sbjct: 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI----SEQIVIGTPGTV 221
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D ++ +D + +++ VLDEAD ++ G Q Q I LP+ + LFSAT ++V
Sbjct: 222 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 281
Query: 122 EELSKAGLRNPVRVEVRAE 140
+ ++ + +P ++++ E
Sbjct: 282 WKFAQKVVPDPNVIKLKRE 300
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-34
Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 4 IISPTRELSSQIYHVAQPF--ISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+++PTREL+ Q VA I D K + GG+ KA + ++ A++++ TPGR
Sbjct: 61 VVTPTRELTRQ---VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR--NADIVVATPGR 115
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
L D+ + V+D + EI+++DEAD + +MGF I I+++ + TGLFSAT E +
Sbjct: 116 LLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEI 174
Query: 122 EELSKAGLRNPVRVEV 137
++ K + N +E
Sbjct: 175 RKVVKDFITNYEEIEA 190
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-33
Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 18/199 (9%)
Query: 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA---DVKKIEEEGANLLIGTPG 60
++ PT L Q Q VK ++ + K EE+ ++L+ +
Sbjct: 69 LVFPTVTLVKQTLERLQKLADE--KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+ + L + + + +D+ D +L ++ +P+ FS +
Sbjct: 127 FVSK---NREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGK 183
Query: 121 VEELSKAGLRNPVRVEV-RAESKSHHVSASSQQLASSKTPLGLHLE-----YLECEPDEK 174
+ E K + V A+ + L + L + EK
Sbjct: 184 IYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEK 243
Query: 175 PSQLVDLLIKNKSKKIIIY 193
+L+++ I+I+
Sbjct: 244 LVELLEIF----RDGILIF 258
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 3e-32
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ ++P+REL+ Q V Q + + S L+V K + A +++GTPG +
Sbjct: 79 ICLAPSRELARQTLEVVQE-MGKFTKITSQLIVPDSFEKNK-----QINAQVIVGTPGTV 132
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D+M R ++ + ++I VLDEAD +LD G Q + LPK + LFSAT +AV
Sbjct: 133 LDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAV 191
Query: 122 EELSKAGLRNPVRVEVRAE 140
+ +K + N +E++
Sbjct: 192 RQYAKKIVPNANTLELQTN 210
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-31
Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 2 GMIISPTRELSSQIYHVAQPF--ISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTP 59
+I++PTREL+ Q VA + ++K + GG + +K ++ AN+++GTP
Sbjct: 77 AIILTPTRELAIQ---VADEIESLKGNKNLKIAKIYGGKAIYPQIKALK--NANIVVGTP 131
Query: 60 GRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119
GR+ D + R L+ +N++ +LDEAD +L+MGF K + I++ K +R LFSAT
Sbjct: 132 GRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR 190
Query: 120 AVEELSKAGLRNPVRVEVRAESKSHHV 146
+ L+K + + ++ + +
Sbjct: 191 EILNLAKKYMGDYSFIKAKINANIEQS 217
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-07
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 4/124 (3%)
Query: 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY 63
+++PT+ L Q + LP K V L G E + + A +++ TP +
Sbjct: 57 MLAPTKPLVLQHAESFRRLF-NLPPEKIVALTG--EKSPEERSKAWARAKVIVATPQTIE 113
Query: 64 DIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEE 123
+ + + ++ ++V DEA R + I+ R K +A+ E+
Sbjct: 114 NDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEK 172
Query: 124 LSKA 127
+ +
Sbjct: 173 IMEV 176
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 3e-05
Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 38/253 (15%)
Query: 1 MGMIISPTRELSSQ--IYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI--EEEGAN-LL 55
+ SP L + + P ++ D S + + ++A+++++ + N LL
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 56 IGTPGRLYDI--MERMDVLDFRNLEILVL--DE--ADRLLDMGFQKQISYIISRLPKLRR 109
+ L ++ + + + +IL+ + D L IS + L
Sbjct: 249 V-----LLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFL-SAATTTHIS-LDHHSMTLTP 300
Query: 110 T---GLFSATQTEAVEELSK-AGLRNPVRVEVRAESKSHHVSASS--QQLASSK--TPLG 161
L ++L + NP R+ + AES ++ + + K T +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 162 LHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPR-----LAVLKSL 216
L LE P E L + S I + + W V+ + L
Sbjct: 361 SSLNVLE--PAEYRKMFDRLSVFPPSAHIPTILL---SL-IWFDVIKSDVMVVVNKLHKY 414
Query: 217 SLIPLHGKMKQVG 229
SL+ K +
Sbjct: 415 SLVEKQPKESTIS 427
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 230 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.97 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.97 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.97 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.97 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.97 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.96 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.96 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.96 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.96 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.96 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.95 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.95 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.94 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.94 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.93 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.93 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.93 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.92 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.92 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.92 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.92 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.92 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.92 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.92 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.92 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.92 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.92 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.91 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.91 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.91 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.9 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.9 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.9 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.9 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.9 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.9 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.89 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.88 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.88 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.88 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.88 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.88 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.87 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.87 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.87 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.86 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.86 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.86 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.86 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.85 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.84 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.82 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.8 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.78 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.76 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.73 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.72 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.72 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.72 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.7 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.68 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.67 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.66 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.64 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.62 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.59 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.55 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.54 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.54 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.5 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.5 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.43 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.39 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.36 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.25 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.02 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.01 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 98.95 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 98.95 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 98.94 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 98.9 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 98.85 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 98.83 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 98.61 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 98.6 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 98.02 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 98.57 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 98.03 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 97.26 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 96.61 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 95.04 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 95.03 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 94.21 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 94.14 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 93.46 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 93.29 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 92.93 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 92.24 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 91.98 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 91.96 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 91.95 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 91.64 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 91.63 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 91.6 | |
| 3foj_A | 100 | Uncharacterized protein; protein SSP1007, structur | 90.94 | |
| 1wv9_A | 94 | Rhodanese homolog TT1651; CDC25, phosphatase, sulf | 90.91 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 90.81 | |
| 3eme_A | 103 | Rhodanese-like domain protein; alpha-beta-alpha sa | 90.8 | |
| 3gk5_A | 108 | Uncharacterized rhodanese-related protein TVG08686 | 90.74 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 90.44 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 90.26 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 90.23 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 90.01 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 89.95 | |
| 3iwh_A | 103 | Rhodanese-like domain protein; alpha-beta-alpha sa | 89.94 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 89.9 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 89.42 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 89.21 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 88.94 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 88.82 | |
| 3hix_A | 106 | ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q | 87.91 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 87.61 | |
| 3flh_A | 124 | Uncharacterized protein LP_1913; alpha-beta protei | 87.44 | |
| 2k0z_A | 110 | Uncharacterized protein HP1203; A/B domain, struct | 87.17 | |
| 3nhv_A | 144 | BH2092 protein; alpha-beta protein, structural gen | 86.8 | |
| 1gmx_A | 108 | GLPE protein; transferase, rhodanese, sulfurtransf | 86.2 | |
| 3g5j_A | 134 | Putative ATP/GTP binding protein; N-terminal domai | 86.06 | |
| 1qxn_A | 137 | SUD, sulfide dehydrogenase; polysulfide-sulfur tra | 85.96 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 85.17 | |
| 2fsx_A | 148 | RV0390, COG0607: rhodanese-related sulfurtransfera | 85.01 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 84.98 | |
| 2hhg_A | 139 | Hypothetical protein RPA3614; MCSG, structural gen | 84.76 | |
| 1tq1_A | 129 | AT5G66040, senescence-associated family protein; C | 84.76 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 84.4 | |
| 3d1p_A | 139 | Putative thiosulfate sulfurtransferase YOR285W; at | 84.33 | |
| 2jtq_A | 85 | Phage shock protein E; solution structure rhodanes | 84.29 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 83.8 | |
| 1vee_A | 134 | Proline-rich protein family; hypothetical protein, | 83.76 | |
| 3ilm_A | 141 | ALR3790 protein; rhodanese-like, NSR437H, NESG, st | 83.24 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 83.01 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 82.73 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 82.07 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 81.85 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 81.49 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 80.03 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=245.27 Aligned_cols=206 Identities=29% Similarity=0.453 Sum_probs=185.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||++||.|+++++++++... ++++..++||.....+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~l 207 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECI-TRGCHVVIATPGRLLDFVDR-TFITFEDTRFV 207 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSCCCTTCCEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHh-hcCCCEEEEChHHHHHHHHh-CCcccccCCeE
Confidence 37999999999999999999998765 78999999999887777776 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhC--CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l--~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+||||++++++|.+.+..|+..+ +...|+++||||+++.+..++..++.++..+.+... ...
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~---------------~~~ 272 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV---------------GGA 272 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST---------------TCC
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc---------------ccc
Confidence 999999999999999999999885 578999999999999999999999999998887665 445
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..++.+.+..+...+|...+.+++.....+ +||||++++.|+.++..|.+. |+++..+||+++++|
T Consensus 273 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~ 338 (434)
T 2db3_A 273 CSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQ 338 (434)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHH
T ss_pred ccccceEEEEeCcHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHH
Confidence 678889999999999999999999887654 999999999999999999988 999999999998753
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=227.06 Aligned_cols=205 Identities=33% Similarity=0.508 Sum_probs=181.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++||.|+++.+++++... ++++..+.|+....++...+ ..+++|+|+||+++.+++.. +.+.+.+++++|
T Consensus 104 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iV 180 (417)
T 2i4i_A 104 SLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMER-GKIGLDFCKYLV 180 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHh-hCCCCEEEEChHHHHHHHHc-CCcChhhCcEEE
Confidence 7999999999999999999998765 78999999999888777777 57899999999999999988 778899999999
Q ss_pred EeccccccccccHHHHHHHHHh--CCC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 82 LDEADRLLDMGFQKQISYIISR--LPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~--l~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+||||++.+++|...+..++.. ++. ..|++++|||+++.+..+...++.++..+..... ..
T Consensus 181 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 245 (417)
T 2i4i_A 181 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV---------------GS 245 (417)
T ss_dssp ESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-------------------
T ss_pred EEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC---------------CC
Confidence 9999999999999999999885 333 6799999999999999999999999988777655 45
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.++.+.+..++..+|...+.++++.. ..+++||||++++.|+.++..|.+. |+++..+||+++++
T Consensus 246 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 313 (417)
T 2i4i_A 246 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQR 313 (417)
T ss_dssp CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHH
T ss_pred CccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHH
Confidence 6778888899999999999999999876 5679999999999999999999988 99999999999864
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-32 Score=227.86 Aligned_cols=206 Identities=30% Similarity=0.495 Sum_probs=184.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.+++++... ++++..+.|+....++...+ ..+++|+|+||+++.+++.. +.+.+.+++++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~v 183 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKL-DYGQHVVAGTPGRVFDMIRR-RSLRTRAIKML 183 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHh-hcCCCEEEcCHHHHHHHHHh-CCccHhheeEE
Confidence 37999999999999999999998776 78999999998888777776 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.+..+...++.+|..+..... .....
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 248 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD---------------ELTLE 248 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGG---------------GCSCT
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999987766554 45567
Q ss_pred cceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.+.+..++..+ |...+..++.....+++||||++++.|+.++..|.+. |+++..+||+++++
T Consensus 249 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 313 (410)
T 2j0s_A 249 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQK 313 (410)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHH
T ss_pred CceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHH
Confidence 7888888877665 8899999998888889999999999999999999988 99999999999864
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=219.48 Aligned_cols=208 Identities=24% Similarity=0.447 Sum_probs=186.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+.+.++++....+++++..+.|+.....+...+..+.++|+|+||+++..++.. ..+.+.+++++|
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vV 157 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFI 157 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEE
Confidence 7999999999999999999998877789999999998887777777666789999999999999887 777899999999
Q ss_pred Eecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||||++.++ ++...+..++...+...|++++|||+++.+..+...++.+|..+...... .....
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 223 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET--------------KLTLH 223 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC--------------CCCCT
T ss_pred EeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc--------------ccCcc
Confidence 9999999884 78889999999999999999999999999999999999999887665442 23456
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.+.+..+...+|...+..+++....+++||||+++++|+.++..|.+. |+++..+||+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~ 287 (391)
T 1xti_A 224 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQE 287 (391)
T ss_dssp TCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHH
T ss_pred cceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHH
Confidence 77888888888899999999999888899999999999999999999988 99999999999864
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=222.41 Aligned_cols=207 Identities=31% Similarity=0.518 Sum_probs=183.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+.+.+++++... +..+..+.|+.....+...+..++++|+|+||+++.+++.. +.+.+.+++++
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~v 187 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMF 187 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEE
Confidence 37999999999999999999998776 78889999998888777777568899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++.++++...+..++..++...|++++|||+++.+..+...++.++..+..... .....
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 252 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE---------------ELTLE 252 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCC---------------CCCTT
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCC---------------ccCCC
Confidence 999999999999999999999999999999999999999999999999999988776555 45667
Q ss_pred cceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.+.+.+......+ |...+..++.....+++||||+++++|+.++..|.+. |+++..+||+|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~ 317 (414)
T 3eiq_A 253 GIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQK 317 (414)
T ss_dssp SCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHH
T ss_pred CceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHH
Confidence 7777777776554 8899999999888889999999999999999999988 99999999999864
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=214.40 Aligned_cols=204 Identities=29% Similarity=0.451 Sum_probs=181.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+.+.++++.... ++++..+.|+.....+...+ ..+++|+|+||+++..++.. +...+.+++++|
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vI 168 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRL-NETVHILVGTPGRVLDLASR-KVADLSDCSLFI 168 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHh-cCCCCEEEEchHHHHHHHHh-CCcccccCCEEE
Confidence 7999999999999999999998776 78999999988877666655 57899999999999999887 667889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||++.+.+|...+..+...++...|++++|||++..+......++.+|..+..... ....+
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 232 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE----------------LTLKG 232 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS----------------CBCTT
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc----------------cccCC
Confidence 99999999999999999999999999999999999999999999999988876644332 34567
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+.+++..++...|...+..+++....+++||||+++++|+.++..|.+. |+++..+||+|+++
T Consensus 233 ~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~ 295 (400)
T 1s2m_A 233 ITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQ 295 (400)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHH
T ss_pred ceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHH
Confidence 7888888888889999999999888889999999999999999999998 99999999999864
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=215.58 Aligned_cols=206 Identities=29% Similarity=0.452 Sum_probs=121.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+.+.++++.... ++++..+.|+....++...+ .+++|+|+||+++...+.. +.+.+.+++++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHH--HHCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhc--CCCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 37999999999999999999998766 78999999998877666665 3689999999999999987 77888999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++.++++...+..+...++...|++++|||+++.+..+...++.+|..+..... ...+.
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 231 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD---------------ELTLE 231 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999988876655 34556
Q ss_pred cceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.+.+..+...+ |...+..+++....+++||||+++++|+.++..|.+. |+++..+||++++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 297 (394)
T 1fuu_A 232 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQE 297 (394)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHH
Confidence 6666666666554 7888888888777889999999999999999999988 999999999998764
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=214.10 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=178.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.++++...++++.+....++....... ..+++|+|+||+++..++...+.+.+++++++
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 37999999999999999999998877778888888776543222 35689999999999999866466778999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++.+ .++...+..+...++...|++++|||+++.+..+...++.++..+..... ....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 237 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 237 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGG---------------GSSC
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccc---------------cccc
Confidence 9999999987 67899999999999999999999999999999999999999998877665 4566
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+.+.+..+.. ..|...+..++.....+++||||++++.|+.++..|.+. |+++..+||+|++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 304 (412)
T 3fht_A 238 DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQ 304 (412)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHH
T ss_pred cCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHH
Confidence 777777777655 468888999998888889999999999999999999988 999999999998653
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-30 Score=222.39 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=117.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+|||+||++||.|++++++++....+++.+....++....... ..+++|+|+||+++.+++.+.+.+.+++++++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 239 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcCCcCcccCCEE
Confidence 47999999999999999999998877778888887776543221 35679999999999999976466778999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++.+ .+|...+..+.+.++...|++++|||+++.+..+...++.+|..+..... ....
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~ 304 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 304 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc---------------ccCc
Confidence 9999999987 68888999999999999999999999999999999999999998887766 4556
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+.+.+..+.. ..|...+..++......++||||++++.|+.++..|... |+++..+||+|++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~ 371 (479)
T 3fmp_B 305 DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQ 371 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHH
Confidence 677777777664 568888888888777889999999999999999999988 999999999998864
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=202.21 Aligned_cols=199 Identities=28% Similarity=0.462 Sum_probs=174.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|+.|+.+.++++.... ++++..+.|+.....+...+ .+++|+|+||+++...+.. +.+.+.+++++|
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 152 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKAL--KNANIVVGTPGRILDHINR-GTLNLKNVKYFI 152 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHH--HTCSEEEECHHHHHHHHHT-TCSCTTSCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhc--CCCCEEEecHHHHHHHHHc-CCcccccCCEEE
Confidence 7999999999999999999998665 78899999998877766666 3789999999999999987 777889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||||++.++++...+..++..++...+++++|||+++........++.++..+... ...+
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 213 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK-------------------INAN 213 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC-------------------SSSS
T ss_pred EeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec-------------------CCCC
Confidence 999999999999999999999999999999999999999989998888877655432 2346
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 162 LHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 162 i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+.+.+..+...+|...+..+++ ....++||||+++++|+.++..|.+. |+++..+||+++++
T Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~ 275 (367)
T 1hv8_A 214 IEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQS 275 (367)
T ss_dssp SEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHH
T ss_pred ceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHH
Confidence 7778888888889999988886 45578999999999999999999988 99999999999864
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=216.07 Aligned_cols=216 Identities=28% Similarity=0.396 Sum_probs=170.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhh---CCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFIST---LPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+|||+||++||.|+.+.++++... .+.+.+..+.|+.....+...+...+++|+|+||+++.+++.......++++
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 3799999999999999999998752 3357888899999888888888677899999999999998876234568899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCC-------CCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccch
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPK-------LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASS 150 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~-------~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (230)
+++|+||||++++++|.+.+..|+..++. ..|+++||||+++.+..+...++.++..+.......
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~-------- 248 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK-------- 248 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS--------
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCc--------
Confidence 99999999999999999999999877643 679999999999999999999999988766543311
Q ss_pred hccccCCCCccceEEEEEcCCCC-cH----HHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 151 QQLASSKTPLGLHLEYLECEPDE-KP----SQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~-k~----~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
........+.+.+...+... +. ..+...+.. ....++||||+|++.|+.++..|.+.. ..|+++..+||+
T Consensus 249 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~-~~~~~v~~~hg~ 324 (579)
T 3sqw_A 249 ---NEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF-KKDLPILEFHGK 324 (579)
T ss_dssp ---SSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHH-TTTSCEEEESTT
T ss_pred ---cccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhh-cCCCcEEEecCC
Confidence 00234455666666655432 22 223333333 466799999999999999999998763 348899999999
Q ss_pred CCCC
Q 026925 225 MKQV 228 (230)
Q Consensus 225 ~~~~ 228 (230)
|+++
T Consensus 325 ~~~~ 328 (579)
T 3sqw_A 325 ITQN 328 (579)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 9875
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=212.49 Aligned_cols=215 Identities=28% Similarity=0.395 Sum_probs=169.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhh---CCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFIST---LPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+|||+||++||.|+++.++++... .+...+..+.|+.....+...+...+++|+|+||+++.+++.......+++++
T Consensus 149 ~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 228 (563)
T 3i5x_A 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVD 228 (563)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccce
Confidence 799999999999999999998653 23567888899988888887776778999999999999988762344688999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCC-------CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchh
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~-------~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (230)
++|+||||++++++|.+.+..+...++ ...|++++|||+++.+..+...++.++..+.......
T Consensus 229 ~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~--------- 299 (563)
T 3i5x_A 229 YKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK--------- 299 (563)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS---------
T ss_pred EEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCC---------
Confidence 999999999999999999999887764 3678999999999999999999999888766543311
Q ss_pred ccccCCCCccceEEEEEcCCCC-cHH----HHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 152 QLASSKTPLGLHLEYLECEPDE-KPS----QLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~-k~~----~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
........+.+.+...+... +.. .+...+.. ....++||||+|++.|+.++..|.+.. ..|+++..+||+|
T Consensus 300 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~-~~~~~v~~~h~~~ 376 (563)
T 3i5x_A 300 --NEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF-KKDLPILEFHGKI 376 (563)
T ss_dssp --SSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHH-TTTSCEEEESTTS
T ss_pred --CCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhc-cCCceEEEecCCC
Confidence 00234455666666655432 222 22233333 567899999999999999999998863 3489999999999
Q ss_pred CCC
Q 026925 226 KQV 228 (230)
Q Consensus 226 ~~~ 228 (230)
+++
T Consensus 377 ~~~ 379 (563)
T 3i5x_A 377 TQN 379 (563)
T ss_dssp CHH
T ss_pred CHH
Confidence 875
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=205.38 Aligned_cols=202 Identities=27% Similarity=0.381 Sum_probs=173.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.+++++... ++.+....++...... ..+++|+|+||+++..++.. +.+.+.+++++
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~i 149 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIF 149 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEE
Confidence 37999999999999999999998665 6777777766543221 35789999999999999987 77889999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++.+ .++...+..+...++...|++++|||+++.+..+...++.++..+..... ....
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 214 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN---------------EVNV 214 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG---------------GCSC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc---------------cccc
Confidence 9999999987 67899999999999999999999999999999999999999888766555 4456
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
..+.+.+..+.. ..|...+..++.....+++||||++++.|+.++..|.+. |+++..+||+|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~ 280 (395)
T 3pey_A 215 DAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQ 280 (395)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHH
T ss_pred ccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHH
Confidence 667777777644 467788888888888899999999999999999999988 99999999999864
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=189.68 Aligned_cols=196 Identities=29% Similarity=0.479 Sum_probs=164.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+.+.+++++... +.++..+.|+.....+...+ ..++|+|+||+++.+++.. +.+.+.+++++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~i 133 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRV--RNADIVVATPGRLLDLWSK-GVIDLSSFEIV 133 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHH--TTCSEEEECHHHHHHHHHT-TSCCGGGCSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhc--CCCCEEEECHHHHHHHHHc-CCcchhhCcEE
Confidence 37999999999999999999998766 78999999998877766665 4599999999999999887 77788999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
|+||||++.++++...+..++..++...+++++|||+++.+......++.++..+... ....
T Consensus 134 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ 195 (337)
T 2z0m_A 134 IIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC------------------IGLA 195 (337)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS------------------GGGG
T ss_pred EEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc------------------cccC
Confidence 9999999999999999999999999999999999999999999999999888766321 2345
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
++.+.+.......+. ....+.....+++||||+++++|+.++..|. ++..+||+++++
T Consensus 196 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~ 253 (337)
T 2z0m_A 196 NVEHKFVHVKDDWRS--KVQALRENKDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQS 253 (337)
T ss_dssp GEEEEEEECSSSSHH--HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHH
T ss_pred CceEEEEEeChHHHH--HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHH
Confidence 566777776655433 3366777788899999999999999998876 356899999864
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=180.59 Aligned_cols=137 Identities=35% Similarity=0.588 Sum_probs=126.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.++++.... ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +...+++++++
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~l 180 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDL-ERGVEICIATPGRLIDFLEC-GKTNLRRTTYL 180 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHHH-TSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCCCcccccEE
Confidence 37999999999999999999999887 89999999999888777777 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
|+||||++.+++|...+..+++.+++..|+++||||+++.+..+++.++.+|..|.+...
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999988654
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=196.57 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=150.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+|||+||++||.|+++.+++++. . ++++..+.|+.+. ..+...+..+.++|+|+||+++.+++.. +.+.++
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~-~-~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~ 140 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLAD-E-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 140 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCC-S-SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCC
T ss_pred EEEEEECCHHHHHHHHHHHHHHcc-C-CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccc
Confidence 479999999999999999999876 3 8899999999887 5556666555699999999999888764 667899
Q ss_pred cEEEEeccccccc-----------cccHHH-HHHHHHhCC-----------CCCcEEEEeec-CchHHH-HHHHhccCCC
Q 026925 78 EILVLDEADRLLD-----------MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVE-ELSKAGLRNP 132 (230)
Q Consensus 78 ~~lVvDEad~l~~-----------~~~~~~-~~~i~~~l~-----------~~~q~i~~SAt-~~~~~~-~~~~~~~~~~ 132 (230)
+++|+||||++.+ .+|.+. +..+++.++ ...|++++||| .++.+. .+...++.
T Consensus 141 ~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-- 218 (414)
T 3oiy_A 141 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 218 (414)
T ss_dssp SEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS--
T ss_pred cEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc--
Confidence 9999999986653 667777 788888876 78999999999 565443 23333322
Q ss_pred eEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhc
Q 026925 133 VRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAV 212 (230)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~ 212 (230)
+..... .....++.+.+... +|...+..+++. .++++||||++++.|+.++..|.+.
T Consensus 219 --~~~~~~---------------~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~-- 275 (414)
T 3oiy_A 219 --FTVGRL---------------VSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRF-- 275 (414)
T ss_dssp --CCSSCC---------------CCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHT--
T ss_pred --cCcCcc---------------ccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHc--
Confidence 111112 34556777777665 577788888877 3489999999999999999999988
Q ss_pred cCCceEE-eccCC
Q 026925 213 LKSLSLI-PLHGK 224 (230)
Q Consensus 213 ~~g~~~~-~lh~~ 224 (230)
|+++. .+||+
T Consensus 276 --~~~~~~~~h~~ 286 (414)
T 3oiy_A 276 --KFNVGETWSEF 286 (414)
T ss_dssp --TCCEEESSSCH
T ss_pred --CCceehhhcCc
Confidence 99998 99984
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=175.44 Aligned_cols=137 Identities=36% Similarity=0.591 Sum_probs=121.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~l 178 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREV-QMGCHLLVATPGRLVDFIEK-NKISLEFCKYI 178 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHH-SSCCSEEEECHHHHHHHHHT-TSBCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-CCCCCEEEECHHHHHHHHHc-CCCChhhCCEE
Confidence 37999999999999999999998765 78888999998877776666 57899999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhC--CC--CCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL--PK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l--~~--~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
|+||||++.+++|...+..+++.+ +. ..|++++|||+++.+..+++.++.+|..+.+...
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 999999999999999999999854 44 7899999999999999999999999999988766
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=182.66 Aligned_cols=135 Identities=27% Similarity=0.416 Sum_probs=120.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|||+||++||.|++++++.++..++++++....|+....... ..+++|+||||+++.+++.+.+.+.+++++++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 48999999999999999999999877778988888877643322 46789999999999999976466789999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEec
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~ 139 (230)
|+||||++++ .+|...+..|.+.++..+|+++||||+++.+..++..++.+|..|.+..
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9999999997 7899999999999999999999999999999999999999999988754
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-25 Score=193.94 Aligned_cols=203 Identities=17% Similarity=0.144 Sum_probs=151.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH-----HhcCCcEEEEcChHHH---HHHhh-CCcc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI-----EEEGANLLIGTPGRLY---DIMER-MDVL 72 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l-----~~~~~~Iiv~TP~~l~---~~l~~-~~~~ 72 (230)
+|||+|+++|+.|+.+.++++ ++++..+.|+....+....+ ..++++|+|+||+++. .++.. ....
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhh
Confidence 799999999999999999886 57888888887765443332 2467999999999874 22221 0234
Q ss_pred cCCcccEEEEeccccccccc--cHHHHHH--HHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCccccccc
Q 026925 73 DFRNLEILVLDEADRLLDMG--FQKQISY--IISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSA 148 (230)
Q Consensus 73 ~~~~l~~lVvDEad~l~~~~--~~~~~~~--i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 148 (230)
.+.+++++||||||++.+|| |.+.+.. ++....+..+++++|||+++.+......++..+....+...
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-------- 233 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-------- 233 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--------
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--------
Confidence 57789999999999999988 7776655 34444457899999999999988888888876654444333
Q ss_pred chhccccCCCCccceEEEEEcCC--CCcHHHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 149 SSQQLASSKTPLGLHLEYLECEP--DEKPSQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
....++...+..... .++...+.++++. ..++++||||+|++.|++++..|.+. |+++..+||+|
T Consensus 234 --------~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l 301 (591)
T 2v1x_A 234 --------FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANL 301 (591)
T ss_dssp --------CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTS
T ss_pred --------CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCC
Confidence 233445444443322 2345667777754 36789999999999999999999988 99999999999
Q ss_pred CCCC
Q 026925 226 KQVG 229 (230)
Q Consensus 226 ~~~e 229 (230)
++++
T Consensus 302 ~~~~ 305 (591)
T 2v1x_A 302 EPED 305 (591)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8653
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-25 Score=172.20 Aligned_cols=131 Identities=32% Similarity=0.550 Sum_probs=115.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++||.|+++.++++.. .++++..+.|+.....+...+ .++++|+|+||+++..++.. +.+.+++++++|
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lV 172 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDI-SKGVDIIIATPGRLNDLQMN-NSVNLRSITYLV 172 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHH-HSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcCcccceEEE
Confidence 79999999999999999999863 278899999988877777776 57899999999999999887 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEE
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVE 136 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~ 136 (230)
+||||++.+++|...+..++..++.+.|++++|||+++.++.++..++.+|..+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999998775
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=172.03 Aligned_cols=135 Identities=38% Similarity=0.665 Sum_probs=122.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++.+.+...+.+.+++++++
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLAL-AKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHH-HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 37999999999999999999998876 78999999998877666666 57899999999999999886456778999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.+..+++.++.+|..+.+
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999998765
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-25 Score=204.07 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=137.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++||.|+++.+.++.. .+..++|+.+. +.+++|+|+||++|.+++.. +...+++++++|
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~--------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVV 295 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 295 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC--------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc--------CCCCCEEEeChHHHHHHHHc-CccccccCCEEE
Confidence 79999999999999999998753 56778887763 46799999999999999988 777789999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchH--HHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|||||++.++++...+..++..++...|++++|||+++. +..+.......|..+..... .+
T Consensus 296 IDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~-----------------rp 358 (1108)
T 3l9o_A 296 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF-----------------RP 358 (1108)
T ss_dssp EETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC-----------------CS
T ss_pred EhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC-----------------Cc
Confidence 999999999999999999999999999999999999864 34556666666665544333 22
Q ss_pred ccceEEEEEcCC-------------------------------------------------------CCcHHHHHHHHHh
Q 026925 160 LGLHLEYLECEP-------------------------------------------------------DEKPSQLVDLLIK 184 (230)
Q Consensus 160 ~~i~~~~~~~~~-------------------------------------------------------~~k~~~l~~ll~~ 184 (230)
..++++++.... ..++..+...+..
T Consensus 359 ~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~ 438 (1108)
T 3l9o_A 359 TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK 438 (1108)
T ss_dssp SCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh
Confidence 223333322110 1122334445556
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.+..++||||++++.|+.++..|...
T Consensus 439 ~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 439 KKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp TTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 67789999999999999999999775
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=170.60 Aligned_cols=134 Identities=31% Similarity=0.535 Sum_probs=121.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.++++....+++++..+.|+....++...+ .+++|+|+||+++..++.. +.+.+++++++
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~l 170 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL--KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLF 170 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT--TSCSEEEECHHHHHHHHHT-TSSCGGGCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc--cCCCEEEECHHHHHHHHhc-CCcccccCCEE
Confidence 37999999999999999999998766678999999998877666555 5799999999999999987 77888999999
Q ss_pred EEeccccccccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 81 VLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 81 VvDEad~l~~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
|+||||++.+++ |...+..+++.++...|++++|||+++.+..++..++.+|..+.+
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999999999987 999999999999999999999999999999999999999988754
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-25 Score=172.14 Aligned_cols=136 Identities=33% Similarity=0.592 Sum_probs=112.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.+++++... ++++..+.|+.....+...+..++++|+|+||+++.+++.. +.+.+++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~l 177 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMF 177 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEE
Confidence 37999999999999999999998766 78888888888777776666555599999999999999987 77888999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEe
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~ 138 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.+..+++.++.+|..+.+.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999988654
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=165.13 Aligned_cols=132 Identities=31% Similarity=0.571 Sum_probs=121.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+++.++++....+++++..+.|+....++...+ ..+++|+|+||+++...+.. +...+++++++|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lV 151 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL-DDTVHVVIATPGRILDLIKK-GVAKVDHVQMIV 151 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc-CCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEE
Confidence 7999999999999999999998877678999999998877776666 57899999999999999987 777899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEE
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i 135 (230)
+||||++.+.+|...+..+++.+++..|++++|||+++.+..+++.++.+|..+
T Consensus 152 iDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 152 LDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999999999999999999999999999999999999765
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-25 Score=204.04 Aligned_cols=192 Identities=18% Similarity=0.166 Sum_probs=153.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~---~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+|||+||++||.|+++.+++++ .. ++++..++|+.+. ..+...+..+.++|+|+||+++.+++.. +.++++
T Consensus 123 ~~Lil~PtreLa~Q~~~~l~~l~-~~-~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l 197 (1104)
T 4ddu_A 123 KSALVFPTVTLVKQTLERLQKLA-DE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 197 (1104)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTS-CT-TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCC
T ss_pred eEEEEechHHHHHHHHHHHHHhh-CC-CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCc
Confidence 47999999999999999999987 43 8999999999887 5666677555699999999999888764 667899
Q ss_pred cEEEEecccccc----------c-cccHHH-HHHHHHhCC-----------CCCcEEEEeec-CchHHHH-HHHhccCCC
Q 026925 78 EILVLDEADRLL----------D-MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVEE-LSKAGLRNP 132 (230)
Q Consensus 78 ~~lVvDEad~l~----------~-~~~~~~-~~~i~~~l~-----------~~~q~i~~SAt-~~~~~~~-~~~~~~~~~ 132 (230)
+++|+||||++. + +||... +..+++.++ ...|+++|||| .++.+.. +...++.
T Consensus 198 ~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-- 275 (1104)
T 4ddu_A 198 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 275 (1104)
T ss_dssp SEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--
T ss_pred CEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--
Confidence 999999996654 4 788888 889998887 78999999999 5655442 3333322
Q ss_pred eEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhc
Q 026925 133 VRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAV 212 (230)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~ 212 (230)
+.+... ...+.++.+.++.+ +|...+..+++..+ +++||||++++.|+.++..|...
T Consensus 276 --i~v~~~---------------~~~~~~i~~~~~~~---~k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~-- 332 (1104)
T 4ddu_A 276 --FTVGRL---------------VSVARNITHVRISS---RSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRF-- 332 (1104)
T ss_dssp --CCCCBC---------------CCCCCCEEEEEESC---CCHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHT--
T ss_pred --EEeccC---------------CCCcCCceeEEEec---CHHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhC--
Confidence 222222 34567788877766 57788888888744 89999999999999999999988
Q ss_pred cCCceEE-eccCC
Q 026925 213 LKSLSLI-PLHGK 224 (230)
Q Consensus 213 ~~g~~~~-~lh~~ 224 (230)
|+++. .+||+
T Consensus 333 --g~~~~~~lhg~ 343 (1104)
T 4ddu_A 333 --KFNVGETWSEF 343 (1104)
T ss_dssp --TCCEEESSSSH
T ss_pred --CCCeeeEecCc
Confidence 99998 99983
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=171.46 Aligned_cols=131 Identities=40% Similarity=0.649 Sum_probs=118.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.+++++... +..+..+.|+.....+...+ ..+++|+|+||+++..++.....+.+++++++
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKL-GNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHH-HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHh-cCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 37999999999999999999998776 78889999998887777776 46799999999999999887455789999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCe
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~ 133 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.++.+++.++.++.
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999988654
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=166.72 Aligned_cols=135 Identities=24% Similarity=0.532 Sum_probs=122.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.++++....+++++..+.|+.....+...+..+.++|+|+||+++..++.. +.+.+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~l 162 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHF 162 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEE
Confidence 37999999999999999999998877688999999998887777777666789999999999999987 77889999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEE
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVE 136 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~ 136 (230)
|+||||++.+ .+|...+..+++.++...|++++|||+++.+..+.+.++.+|..+.
T Consensus 163 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 163 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9999999987 5788999999999999999999999999999999999999998774
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=167.85 Aligned_cols=136 Identities=43% Similarity=0.658 Sum_probs=120.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+.+.+++++... ++++..+.|+.....+...+ .+++|+|+||+++...+.....+.+.+++++
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 37999999999999999999998765 68999999988776666555 6799999999999999887446778999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEec
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~ 139 (230)
|+||||++.+++|...+..+++.++...|++++|||+++.+..+.+.++.+|..+.+.+
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999887643
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-24 Score=185.20 Aligned_cols=196 Identities=19% Similarity=0.156 Sum_probs=146.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+|||+|+++|+.|+.+.++.+ ++++..+.++....+.. ..+..++++|+++||+++...... ..+...+++
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~ 141 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPV 141 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEE
T ss_pred EEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCC
Confidence 689999999999999888875 67888888877654433 334457799999999998532111 224458899
Q ss_pred EEEEeccccccccc--cHHHHHHH---HHhCCCCCcEEEEeecCchHHHHHHHhcc--CCCeEEEEeccCcccccccchh
Q 026925 79 ILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGL--RNPVRVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 79 ~lVvDEad~l~~~~--~~~~~~~i---~~~l~~~~q~i~~SAt~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~ 151 (230)
++||||||++.+|| |.+.+..+ ...+ +..+++++|||.++.+......++ .++..+. . .
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~-~----------- 207 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S-S----------- 207 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-C-C-----------
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-C-C-----------
Confidence 99999999999987 66665544 4445 368999999999988766444443 3444332 1 1
Q ss_pred ccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
....++. +...+..++...+..++....++++||||+|++.|+.++..|.+. |+++..+||+|+++
T Consensus 208 -----~~r~~l~--~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~ 273 (523)
T 1oyw_A 208 -----FDRPNIR--YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENN 273 (523)
T ss_dssp -----CCCTTEE--EEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHH
T ss_pred -----CCCCceE--EEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHH
Confidence 1223443 333345678888999998888889999999999999999999988 99999999999864
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=168.55 Aligned_cols=138 Identities=36% Similarity=0.582 Sum_probs=120.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCC---CceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLP---DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||++||++|+.|+++.++++....+ ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +.+.++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~ 151 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL-NVQPHIVIGTPGRINDFIRE-QALDVHTA 151 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC-SSCCSEEEECHHHHHHHHHT-TCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc-CCCCCEEEeCHHHHHHHHHc-CCCCcCcc
Confidence 379999999999999999999987543 47888888887765554444 46799999999999999987 77889999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
+++|+||||++.+++|...+..+++.++...|++++|||+++++..+++.++.+|..+.+...
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999998876544
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-23 Score=190.45 Aligned_cols=178 Identities=20% Similarity=0.217 Sum_probs=133.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|++|+++.+.++.. ++..++|+.+. +.+++|+|+||+++..++.. +...+++++++|
T Consensus 132 vL~l~PtkaLa~Q~~~~l~~~~~-----~vglltGd~~~--------~~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVV 197 (1010)
T 2xgj_A 132 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 197 (1010)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHS-----CEEEECSSCEE--------CTTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred EEEECChHHHHHHHHHHHHHHhC-----CEEEEeCCCcc--------CCCCCEEEEcHHHHHHHHHc-CcchhhcCCEEE
Confidence 79999999999999999998753 67778887764 34689999999999999887 777889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHH--HHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE--ELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
+||+|++.+++++..+..++..++...|++++|||+++... .........+..+...+. .+
T Consensus 198 iDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~-----------------rp 260 (1010)
T 2xgj_A 198 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF-----------------RP 260 (1010)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC-----------------CS
T ss_pred EechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC-----------------Cc
Confidence 99999999999999999999999999999999999987432 222223344554443322 12
Q ss_pred ccceEEEEEcC---------C----------------------------------------------CCcHHHHHHHHHh
Q 026925 160 LGLHLEYLECE---------P----------------------------------------------DEKPSQLVDLLIK 184 (230)
Q Consensus 160 ~~i~~~~~~~~---------~----------------------------------------------~~k~~~l~~ll~~ 184 (230)
..+.++++... . ...+..+...+..
T Consensus 261 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~ 340 (1010)
T 2xgj_A 261 TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK 340 (1010)
T ss_dssp SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHH
T ss_pred ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh
Confidence 22333322211 0 1223345555555
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.+..++||||+|+..|+.++..|...
T Consensus 341 ~~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 341 KKYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HTCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 56679999999999999999999874
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=163.46 Aligned_cols=136 Identities=34% Similarity=0.592 Sum_probs=113.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++|+.|+++.++++.... ++++..+.|+....++...+ ..++|+|+||+++...+.. +.+.+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~i 159 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 159 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------C--TTCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcC--CCCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 37999999999999999999998766 78999999988776665555 3499999999999999988 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
|+||||++.+++|...+..++..++...|++++|||+++.+..+.+.++.+|..+.+..+
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999998876554
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=159.72 Aligned_cols=131 Identities=34% Similarity=0.578 Sum_probs=118.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|+.|+++.++++.. ++++..+.|+.....+...+ ..+++|+|+||+++..++.. +.+.+++++++|
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iV 149 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEAL-LRGADAVVATPGRALDYLRQ-GVLDLSRVEVAV 149 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHH-HHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHh-hCCCCEEEECHHHHHHHHHc-CCcchhhceEEE
Confidence 79999999999999999999864 36788888888776666666 46899999999999999988 778899999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
+||||++.+++|...+..+++.++...|++++|||+++.+..+.+.++.+|..+.+
T Consensus 150 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 150 LDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp EESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999999999999988764
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-24 Score=193.63 Aligned_cols=221 Identities=13% Similarity=0.155 Sum_probs=152.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~~~ 74 (230)
.|+||+||++||.|+..++..+...+ ++++..+.||.+...+.. ..+|||+||||++| .+++... +.+.+
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~l-gl~v~~i~gg~~~~~r~~---~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFL-GLTVGLNLNSMSKDEKRE---AYAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTSCHHHHHH---HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHH---hcCCCEEEECchhhhHHHHHHhhhcchhhhcc
Confidence 47999999999999999999999988 899999999987654332 24699999999999 6666541 23567
Q ss_pred CcccEEEEecccccc-ccc---------------cHHHHHHHHHhCC---------CCCcEE-----------------E
Q 026925 75 RNLEILVLDEADRLL-DMG---------------FQKQISYIISRLP---------KLRRTG-----------------L 112 (230)
Q Consensus 75 ~~l~~lVvDEad~l~-~~~---------------~~~~~~~i~~~l~---------~~~q~i-----------------~ 112 (230)
+++.++|+||||.|+ +.+ |...+..|++.++ +.+|+. +
T Consensus 202 r~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~L 281 (844)
T 1tf5_A 202 RPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNL 281 (844)
T ss_dssp CCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCT
T ss_pred cCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcccc
Confidence 999999999999998 553 7789999999997 367887 8
Q ss_pred EeecCch---HHHHH--HHhccC-CCeEE------EEeccCccccccc---------------chhccccCC--------
Q 026925 113 FSATQTE---AVEEL--SKAGLR-NPVRV------EVRAESKSHHVSA---------------SSQQLASSK-------- 157 (230)
Q Consensus 113 ~SAt~~~---~~~~~--~~~~~~-~~~~i------~~~~~~~~~~~~~---------------~~~~~~~~~-------- 157 (230)
||||.+. ++... +..++. +...+ .+-++.....++. ......+..
T Consensus 282 fsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q 361 (844)
T 1tf5_A 282 FDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQ 361 (844)
T ss_dssp TSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHH
T ss_pred CCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHH
Confidence 9999874 34333 223333 22111 1111100000000 000000000
Q ss_pred ---------------------------------CCcc---c---eEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCc
Q 026925 158 ---------------------------------TPLG---L---HLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMT 196 (230)
Q Consensus 158 ---------------------------------~~~~---i---~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t 196 (230)
.|.+ + ...++.....+|...+...+.. ..++++||||+|
T Consensus 362 ~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 362 NYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp HHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 0111 0 0113344556788888888864 356799999999
Q ss_pred hhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 197 CACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 197 ~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++.++.++..|... |+++.++||++.++|
T Consensus 442 ~~~se~Ls~~L~~~----gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 442 VETSELISKLLKNK----GIPHQVLNAKNHERE 470 (844)
T ss_dssp HHHHHHHHHHHHTT----TCCCEEECSSCHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEeeCCccHHH
Confidence 99999999999988 999999999986543
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-24 Score=190.51 Aligned_cols=219 Identities=16% Similarity=0.194 Sum_probs=124.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCC-----cccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~-----~~~~ 74 (230)
+|+||+||++||.|++.++..+...+ ++++..+.||.+... ..+ ..++||+||||++| .++++..- ...+
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~l-gl~v~~i~GG~~~~~--r~~-~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~ 192 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFL-GLTVGINLPGMPAPA--KRE-AYAADITYGTNNEYGFDYLRDNMAFSPEERVQ 192 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHH--HHH-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHH--HHH-hcCCCEEEECCchhhHHHHHhhhhccHhHhcc
Confidence 47999999999999999999999988 899999999987643 333 34699999999999 78877521 2567
Q ss_pred CcccEEEEecccccc-cc---------------ccHHHHHHHHHhCCC--------------------CCcEE-------
Q 026925 75 RNLEILVLDEADRLL-DM---------------GFQKQISYIISRLPK--------------------LRRTG------- 111 (230)
Q Consensus 75 ~~l~~lVvDEad~l~-~~---------------~~~~~~~~i~~~l~~--------------------~~q~i------- 111 (230)
++++++|+||||.|+ +. +|...+..|+..+++ .+|+.
T Consensus 193 ~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~ 272 (853)
T 2fsf_A 193 RKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLV 272 (853)
T ss_dssp CSCCEEEESCHHHHTTTTTTCEEEEEEC----------------------------------------------------
T ss_pred cCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHH
Confidence 999999999999998 43 356788888888874 45653
Q ss_pred -----------------EEeecCch---HHHHHH--HhccC--------CCeEEEEeccCcccccc--------------
Q 026925 112 -----------------LFSATQTE---AVEELS--KAGLR--------NPVRVEVRAESKSHHVS-------------- 147 (230)
Q Consensus 112 -----------------~~SAt~~~---~~~~~~--~~~~~--------~~~~i~~~~~~~~~~~~-------------- 147 (230)
+||||.++ ++...+ ..++. ++..+.+. +...+.++
T Consensus 273 ~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVd-e~tgR~m~grr~sdGLhQaiea 351 (853)
T 2fsf_A 273 LIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVD-EHTGRTMQGRRWSDGLHQAVEA 351 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEe-cccCcccCCCccchhhhHHHHh
Confidence 89999764 222211 11121 11111110 00000000
Q ss_pred -cchhccccCCCCccce-----------------------------------------------EEEEEcCCCCcHHHHH
Q 026925 148 -ASSQQLASSKTPLGLH-----------------------------------------------LEYLECEPDEKPSQLV 179 (230)
Q Consensus 148 -~~~~~~~~~~~~~~i~-----------------------------------------------~~~~~~~~~~k~~~l~ 179 (230)
.......+..+...+. ..++.....+|...+.
T Consensus 352 ke~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~ 431 (853)
T 2fsf_A 352 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAII 431 (853)
T ss_dssp -----CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHH
T ss_pred cccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHH
Confidence 0000000011111111 1134445667888888
Q ss_pred HHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 180 DLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 180 ~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
..+.. ..++|+||||+|++.++.++..|.+. |++..++||++.++
T Consensus 432 ~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~----gi~~~vLnak~~~r 478 (853)
T 2fsf_A 432 EDIKERTAKGQPVLVGTISIEKSELVSNELTKA----GIKHNVLNAKFHAN 478 (853)
T ss_dssp HHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT----TCCCEECCTTCHHH
T ss_pred HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC----CCCEEEecCChhHH
Confidence 88864 46789999999999999999999998 99999999997654
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-24 Score=201.15 Aligned_cols=191 Identities=17% Similarity=0.162 Sum_probs=149.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCc----eEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDV----KSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLD 73 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~----~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~ 73 (230)
.+|||+||++||.|+++.+++++... ++ ++..++|+.+..++ ...+ .. ++|+|+||+++.+++.+
T Consensus 101 ~~lil~PtreLa~Q~~~~l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l-~~-~~IlV~TP~~L~~~l~~----- 172 (1054)
T 1gku_B 101 RCYVIFPTSLLVIQAAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNL-RN-FKIVITTTQFLSKHYRE----- 172 (1054)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSG-GG-CSEEEEEHHHHHHCSTT-----
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhc-cC-CCEEEEcHHHHHHHHHH-----
Confidence 47999999999999999999998876 67 89999998877653 3333 34 99999999999887754
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhC-----------CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCc
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL-----------PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESK 142 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l-----------~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~ 142 (230)
+++++++|+||||+++++ ...+..++..+ +...|++++|||+++. ..+...++.++..+.+...
T Consensus 173 L~~l~~lViDEah~~l~~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~-- 247 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILKA--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS-- 247 (1054)
T ss_dssp SCCCSEEEESCHHHHHTS--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC--
T ss_pred hccCCEEEEeChhhhhhc--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc--
Confidence 679999999999999984 56777777766 3568999999999987 5444444444443333332
Q ss_pred ccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEecc
Q 026925 143 SHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLH 222 (230)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh 222 (230)
.....++.+.+. +.+|...+..+++.. ++++||||+|++.|+.++..|... +++..+|
T Consensus 248 -------------~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lh 305 (1054)
T 1gku_B 248 -------------RITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVT 305 (1054)
T ss_dssp -------------EECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECT
T ss_pred -------------ccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEe
Confidence 334556777666 466777888888765 478999999999999999999763 8899999
Q ss_pred CCCC
Q 026925 223 GKMK 226 (230)
Q Consensus 223 ~~~~ 226 (230)
|++.
T Consensus 306 g~~~ 309 (1054)
T 1gku_B 306 ATKK 309 (1054)
T ss_dssp TSSS
T ss_pred ccHH
Confidence 9984
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=189.75 Aligned_cols=113 Identities=27% Similarity=0.296 Sum_probs=97.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++||++|+.|+++.+.++. +++++..++|+... +..++|+|+||+++..++.. ....+++++++|
T Consensus 85 vlvl~PtraLa~Q~~~~l~~~~---~~~~v~~l~G~~~~--------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvV 152 (997)
T 4a4z_A 85 TIYTSPIKALSNQKFRDFKETF---DDVNIGLITGDVQI--------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVI 152 (997)
T ss_dssp EEEEESCGGGHHHHHHHHHTTC-----CCEEEECSSCEE--------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHc---CCCeEEEEeCCCcc--------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEE
Confidence 7999999999999999998864 36788889888753 45689999999999999987 667789999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
|||||++.++++...+..++..++...|++++|||+++.. .+..+
T Consensus 153 iDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~-ef~~~ 197 (997)
T 4a4z_A 153 FDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY-EFANW 197 (997)
T ss_dssp ECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH-HHHHH
T ss_pred EECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChH-HHHHH
Confidence 9999999999999999999999999999999999998653 44443
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-23 Score=163.63 Aligned_cols=139 Identities=29% Similarity=0.394 Sum_probs=115.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC-cccCCcccE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-VLDFRNLEI 79 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~-~~~~~~l~~ 79 (230)
.+||++||++||.|+++.+++++... ++++..+.|+.............+++|+|+||+++..++.... .+.++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 37999999999999999999998776 7888777766544333223334678999999999999998722 567899999
Q ss_pred EEEecccccccc---ccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEecc
Q 026925 80 LVLDEADRLLDM---GFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 80 lVvDEad~l~~~---~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~ 140 (230)
+|+||||++.++ +|...+..++..+. ...|++++|||+++++..+++.++.+|..+.+...
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999884 68889999887764 57899999999999999999999999999887654
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=181.09 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=132.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|+++||.|+++.++++... ++++..++|+....... .++++|+|+||+++..++.. ....+++++++|
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 143 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDEW----LGKYDIIIATAEKFDSLLRH-GSSWIKDVKILV 143 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCGG----GGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCccccc----cCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEE
Confidence 799999999999999999776543 78999999976653321 25789999999999999887 666689999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||+|.+.++++...+..++..++...|++++|||+++ ...+.. |+..+. +. .. ..+..
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~--~~----------------~rp~~ 202 (720)
T 2zj8_A 144 ADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAEL-IV--SD----------------WRPVK 202 (720)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEE-EE--CC----------------CCSSE
T ss_pred EECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcc-cC--CC----------------CCCCc
Confidence 99999998888999999999988778999999999986 355554 443211 11 11 11111
Q ss_pred ceEEE------EEcC-----CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 162 LHLEY------LECE-----PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 162 i~~~~------~~~~-----~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
+...+ .... ...+...+.+.+. .++++||||++++.|+.++..|.+.
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~ 260 (720)
T 2zj8_A 203 LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKK 260 (720)
T ss_dssp EEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHH
Confidence 11111 1111 2345566666664 3579999999999999999999864
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=182.64 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=91.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~l 80 (230)
+|||+||++|+.|+.+.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++.+.+.. +.+ .+.+++++
T Consensus 64 ~lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~L~~~l~~-~~~~~l~~~~~v 140 (696)
T 2ykg_A 64 VVFFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKK-GTIPSLSIFTLM 140 (696)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCSSSCHHHH-HHTCSEEEECHHHHHHHHHT-TSSCCGGGCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccC-CceEEEEeCCccccccHHHh-ccCCCEEEECHHHHHHHHhc-CcccccccccEE
Confidence 7999999999999999999998655 78999999987655455555 35799999999999999987 655 78999999
Q ss_pred EEeccccccccc-cHHHHHHHHHh-----CCCCCcEEEEeecCc
Q 026925 81 VLDEADRLLDMG-FQKQISYIISR-----LPKLRRTGLFSATQT 118 (230)
Q Consensus 81 VvDEad~l~~~~-~~~~~~~i~~~-----l~~~~q~i~~SAt~~ 118 (230)
|+||||++.+.. +...+...+.. .+...+++++|||..
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 141 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred EEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 999999998654 44433333332 245789999999986
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=166.39 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=91.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+.+.++++.+. ++.++..+.|+....+..... .+++|+|+||+.+...+.. +.+.+.+++++|
T Consensus 55 ~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~--~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vI 130 (494)
T 1wp9_A 55 VLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSKAW--ARAKVIVATPQTIENDLLA-GRISLEDVSLIV 130 (494)
T ss_dssp EEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHHHH--HHCSEEEECHHHHHHHHHT-TSCCTTSCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhCc-chhheEEeeCCcchhhhhhhc--cCCCEEEecHHHHHHHHhc-CCcchhhceEEE
Confidence 799999999999999999998632 356888888887765543333 4689999999999999887 777889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchH
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~ 120 (230)
+||||++.+......+...+....+..+++++|||....
T Consensus 131 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~ 169 (494)
T 1wp9_A 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGST 169 (494)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSS
T ss_pred EECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCC
Confidence 999999986644444455555556788999999999743
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=174.69 Aligned_cols=114 Identities=13% Similarity=0.162 Sum_probs=88.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~l 80 (230)
+|||+||++|+.|+.+.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +.+ .+.+++++
T Consensus 58 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~v 134 (556)
T 4a2p_A 58 VVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFED-GTLTSLSIFTLM 134 (556)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHHH-HHHCSEEEECHHHHHHHHHS-SSCCCSTTCSEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCcchhHHHh-hCCCCEEEECHHHHHHHHHh-CcccccccCCEE
Confidence 7999999999999999999998876 78999999988766665555 46699999999999999987 666 79999999
Q ss_pred EEeccccccccccHHH-HHHHHHh-C---CCCCcEEEEeecCc
Q 026925 81 VLDEADRLLDMGFQKQ-ISYIISR-L---PKLRRTGLFSATQT 118 (230)
Q Consensus 81 VvDEad~l~~~~~~~~-~~~i~~~-l---~~~~q~i~~SAt~~ 118 (230)
|+||||++.+++.... +..++.. + +...|++++|||.+
T Consensus 135 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 135 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp EEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCC
T ss_pred EEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcc
Confidence 9999999988764332 2233322 2 34689999999984
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=179.54 Aligned_cols=219 Identities=15% Similarity=0.164 Sum_probs=152.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhC-----CcccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~-----~~~~~ 74 (230)
.|+||+||++||.|+..++..+...+ +++++.+.||.+....... .+|||+||||++| .++++.+ +.+.+
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~l-GLsv~~i~gg~~~~~r~~~---y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l 229 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFL-GLQVGVILATMTPDERRVA---YNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHHHHHH---HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHh---cCCCEEEECchHhhHHHHHhhhhccHhhhcc
Confidence 47999999999999999999999988 8999999999875443322 4699999999999 6777652 24567
Q ss_pred CcccEEEEecccccc-cc---------------ccHHHHHHHHHhCC---------CCCcEE-----------------E
Q 026925 75 RNLEILVLDEADRLL-DM---------------GFQKQISYIISRLP---------KLRRTG-----------------L 112 (230)
Q Consensus 75 ~~l~~lVvDEad~l~-~~---------------~~~~~~~~i~~~l~---------~~~q~i-----------------~ 112 (230)
+.+.++||||||.|+ +. +|...+..|+..++ +.+|+. +
T Consensus 230 r~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~L 309 (922)
T 1nkt_A 230 RGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNL 309 (922)
T ss_dssp CCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSST
T ss_pred CCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccc
Confidence 899999999999998 42 47889999999998 678888 8
Q ss_pred EeecCch---HHHHHH--HhccC-CC-------eEEEEeccCccccccc---------------chhccccCCCCccce-
Q 026925 113 FSATQTE---AVEELS--KAGLR-NP-------VRVEVRAESKSHHVSA---------------SSQQLASSKTPLGLH- 163 (230)
Q Consensus 113 ~SAt~~~---~~~~~~--~~~~~-~~-------~~i~~~~~~~~~~~~~---------------~~~~~~~~~~~~~i~- 163 (230)
||||.++ ++...+ ..++. +. ..+.+. +...+.++. ......+..+...+.
T Consensus 310 fsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVD-e~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~ 388 (922)
T 1nkt_A 310 YEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVD-EFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITL 388 (922)
T ss_dssp TCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBC-SSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECH
T ss_pred cCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEe-cccCcccCCccccchhhHHHhccccccccccccccceeeh
Confidence 9999875 333322 22332 21 111111 110010100 000000000111111
Q ss_pred ----------------------------------------------EEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcC
Q 026925 164 ----------------------------------------------LEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFM 195 (230)
Q Consensus 164 ----------------------------------------------~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~ 195 (230)
..++.....+|...+...+.. ..++|+||||+
T Consensus 389 Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~ 468 (922)
T 1nkt_A 389 QNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTT 468 (922)
T ss_dssp HHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 113334556688888888764 25679999999
Q ss_pred chhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 196 TCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 196 t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
|++.++.|+..|.+. |++..++||+..++
T Consensus 469 Sie~sE~Ls~~L~~~----Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 469 SVERSEYLSRQFTKR----RIPHNVLNAKYHEQ 497 (922)
T ss_dssp CHHHHHHHHHHHHHT----TCCCEEECSSCHHH
T ss_pred CHHHHHHHHHHHHHC----CCCEEEecCChhHH
Confidence 999999999999998 99999999997544
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-22 Score=178.31 Aligned_cols=190 Identities=14% Similarity=0.139 Sum_probs=128.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|+++||.|+++.++.+.. . ++++..++|+....+. . .++++|+|+||+++..++.. ....+++++++|
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~--~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 150 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA--W--LKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFV 150 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG--G--GGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh--h--cCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEE
Confidence 79999999999999999976654 3 7899888887655332 1 24789999999999999988 666689999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCcc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
+||+|.+.+.+++..++.++..++ ..|++++|||+++ ...+.. |+..+. +.....+. +......... ...
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~----~l~~~~~~~~--~~~ 220 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEP-VATNWRPV----PLIEGVIYPE--RKK 220 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEE-EECCCCSS----CEEEEEEEEC--SST
T ss_pred EechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCc-cCCCCCCC----CceEEEEecC--Ccc
Confidence 999999988888999999888886 8999999999985 355554 343221 11111100 0000000000 000
Q ss_pred ceEEEEEcC--------CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 162 LHLEYLECE--------PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 162 i~~~~~~~~--------~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
........+ ...+...+.+.+. .++++||||+++++|+.++..|.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~ 275 (715)
T 2va8_A 221 KEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANY 275 (715)
T ss_dssp TEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred cceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHH
Confidence 000011111 1233444444443 5679999999999999999999875
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=168.98 Aligned_cols=116 Identities=13% Similarity=0.175 Sum_probs=93.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEI 79 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~ 79 (230)
.+|||+||++|+.|+.+.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++..++.. +.+ .+.++++
T Consensus 54 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~ 130 (555)
T 3tbk_A 54 KVVFFANQIPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHI-IEDNDIIILTPQILVNNLNN-GAIPSLSVFTL 130 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECTTTGGGSCHHHH-HHHCSEEEECHHHHHHHHHT-SSSCCGGGCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHhccC-CcEEEEEcCCCcchhhHHHH-hcCCCEEEECHHHHHHHHhc-CcccccccCCE
Confidence 37999999999999999999998876 78999999998766555555 35799999999999999987 656 7899999
Q ss_pred EEEeccccccccc-cHHHHHHHHHhC-----CCCCcEEEEeecCch
Q 026925 80 LVLDEADRLLDMG-FQKQISYIISRL-----PKLRRTGLFSATQTE 119 (230)
Q Consensus 80 lVvDEad~l~~~~-~~~~~~~i~~~l-----~~~~q~i~~SAt~~~ 119 (230)
+|+||||++.+.+ +...+...+... ....|++++|||++.
T Consensus 131 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 131 MIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp EEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred EEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 9999999998764 444444444332 245799999999853
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=171.30 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=126.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++|||+||.|+++.+.+.. +..+....|+.. ..++++|+|+||++| +.. +.+.+++++++
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~vG~~~--------~~~~~~IlV~TPGrL---l~~-~~l~l~~l~~l 322 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAH----GIDPNIRTGVRT--------ITTGAPVTYSTYGKF---LAD-GGCSGGAYDII 322 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHH----SCCCEEECSSCE--------ECCCCSEEEEEHHHH---HHT-TSCCTTSCSEE
T ss_pred eEEEEcchHHHHHHHHHHHHHHh----CCCeeEEECcEe--------ccCCCCEEEECcHHH---HhC-CCcccCcccEE
Confidence 48999999999999998776654 445566666654 257899999999996 455 77889999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCc--EEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRR--TGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q--~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+|||| +++.+|...+..|++.++...| ++++|||+++.+. ...+....+... .
T Consensus 323 VlDEAH-~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~-----------------~ 378 (666)
T 3o8b_A 323 ICDECH-STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALS-----------------N 378 (666)
T ss_dssp EETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB-----------------S
T ss_pred EEccch-hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeec-----------------c
Confidence 999996 6788889999999999987777 6777999987311 112222111111 0
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.. . ..+.. ++....+++||||+|++.|++++..|++. |+++..+||+|++++
T Consensus 379 ~~~i~~----~--~~~~~-----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 379 TGEIPF----Y--GKAIP-----IEAIRGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV 434 (666)
T ss_dssp CSSEEE----T--TEEEC-----GGGSSSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG
T ss_pred cchhHH----H--Hhhhh-----hhhccCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH
Confidence 000100 0 00000 23346789999999999999999999988 999999999999865
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.86 E-value=9.4e-22 Score=189.69 Aligned_cols=186 Identities=13% Similarity=0.156 Sum_probs=131.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc--ccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~--~~~~~l~~ 79 (230)
+|+++|+|+||+|+++.+++..... ++++..++|+.+...+. ..+++|+|+|||++..++++ .. -.++++++
T Consensus 137 ~lyiaP~kALa~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~----~~~~~IlVtTpEkld~llr~-~~~~~~l~~v~~ 210 (1724)
T 4f92_B 137 IIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKEE----ISATQIIVCTPEKWDIITRK-GGERTYTQLVRL 210 (1724)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTT-TCCEEECCSSCSSCCTT----GGGCSEEEECHHHHHHHTTS-STTHHHHTTEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHhhC-CCEEEEEECCCCCCccc----cCCCCEEEECHHHHHHHHcC-CccchhhcCcCE
Confidence 7999999999999999999888777 89999999987653321 35689999999998777765 32 23789999
Q ss_pred EEEeccccccccccHHHHHHHHH-------hCCCCCcEEEEeecCchHHHHHHHhccCCCe-EEEEeccCcccccccchh
Q 026925 80 LVLDEADRLLDMGFQKQISYIIS-------RLPKLRRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~-------~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~ 151 (230)
+|+||+|.+-+ ..+..++.++. ..+...|++++|||+++ .+.++++.-.++. .+..-+.
T Consensus 211 vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~----------- 277 (1724)
T 4f92_B 211 IILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDN----------- 277 (1724)
T ss_dssp EEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCG-----------
T ss_pred EEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECC-----------
Confidence 99999996654 45555554443 45678999999999986 4566554322221 1222122
Q ss_pred ccccCCCCccceEEEEEcCCCCcHH-------HHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPS-------QLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~-------~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
...|..+.+.++...+..... .+...+.. .+.+++||||+|++.|+.++..|.+.
T Consensus 278 ----~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~ 340 (1724)
T 4f92_B 278 ----SFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDM 340 (1724)
T ss_dssp ----GGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHH
T ss_pred ----CCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHH
Confidence 345667777777766554321 12222222 35679999999999999999988654
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-22 Score=178.53 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=140.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++|+++||.|+++.++.+.. . ++++..++|+....+. . .++++|+|+||+++..++.+ ....+++++++
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~--~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~v 142 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDE--H--LGDCDIIVTTSEKADSLIRN-RASWIKAVSCL 142 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSS--C--STTCSEEEEEHHHHHHHHHT-TCSGGGGCCEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchh--h--ccCCCEEEECHHHHHHHHHc-ChhHHhhcCEE
Confidence 379999999999999999976643 3 7899999988765332 1 24789999999999999987 66668999999
Q ss_pred EEeccccccccccHHHHHHHHHhC---CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l---~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
|+||+|.+.++++...+..++..+ ++..|++++|||+++ ...+.. |+..+. +....
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~------------------ 201 (702)
T 2p6r_A 143 VVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDW------------------ 201 (702)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCC------------------
T ss_pred EEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCC------------------
Confidence 999999999888888887776665 568999999999986 455555 444322 11111
Q ss_pred CCccceEEEE------EcCC-------CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhcc-----------
Q 026925 158 TPLGLHLEYL------ECEP-------DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVL----------- 213 (230)
Q Consensus 158 ~~~~i~~~~~------~~~~-------~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~----------- 213 (230)
.+..+...+. ..+. ..+...+.+.+. .++++||||+++++|+.++..|.+....
T Consensus 202 r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i 279 (702)
T 2p6r_A 202 RPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAI 279 (702)
T ss_dssp CSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHH
T ss_pred CCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 1111111111 0111 114455555554 4579999999999999999999864200
Q ss_pred ---------------CCceEEeccCCCCCCC
Q 026925 214 ---------------KSLSLIPLHGKMKQVG 229 (230)
Q Consensus 214 ---------------~g~~~~~lh~~~~~~e 229 (230)
.+..+.++||+|++++
T Consensus 280 ~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 310 (702)
T 2p6r_A 280 LEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 310 (702)
T ss_dssp HTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HhhccccccHHHHHHHhcCeEEecCCCCHHH
Confidence 0135788999998753
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=175.54 Aligned_cols=115 Identities=13% Similarity=0.169 Sum_probs=90.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEI 79 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~ 79 (230)
.+|||+||++|+.|+.+.+++++... ++++..++|+.....+...+ ..+++|+|+||+++.+.+.. +.+ .+.++++
T Consensus 298 ~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~ 374 (797)
T 4a2q_A 298 KVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFED-GTLTSLSIFTL 374 (797)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHHH-HHTCSEEEECHHHHHHHHHS-SSCCCGGGCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHhcccC-CceEEEEeCCcchhhhHHHh-hCCCCEEEEchHHHHHHHHh-ccccccccCCE
Confidence 37999999999999999999998866 78999999998766665555 46899999999999999987 666 7899999
Q ss_pred EEEeccccccccc-cHHHHHHHHHhC----CCCCcEEEEeecCc
Q 026925 80 LVLDEADRLLDMG-FQKQISYIISRL----PKLRRTGLFSATQT 118 (230)
Q Consensus 80 lVvDEad~l~~~~-~~~~~~~i~~~l----~~~~q~i~~SAt~~ 118 (230)
+|+||||++.+.+ +...+..+.... ....|++++|||.+
T Consensus 375 iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 375 MIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp EEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred EEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 9999999998764 333333333321 45689999999984
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-21 Score=179.57 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=140.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|+++.+++....+ ++++..+.+.....+. ...+..+.++|+||||+.+ . +.+.++++
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~--~~~~~~~l 726 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----Q--SDVKFKDL 726 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----H--SCCCCSSE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----h--CCcccccc
Confidence 47999999999999999999887666 6888888776554333 3345456799999999754 2 45678999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++|+||+|++ ......++..++...+++++|||..+....+....+.++..+...+.
T Consensus 727 ~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~----------------- 784 (1151)
T 2eyq_A 727 GLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA----------------- 784 (1151)
T ss_dssp EEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC-----------------
T ss_pred ceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC-----------------
Confidence 99999999995 33345566667778999999999988777777766665544322211
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
....+..++.... +......+++. ..+++++||||++++|+.++..|.+. .+|.++..+||+|++++
T Consensus 785 ~r~~i~~~~~~~~---~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~--~p~~~v~~lhg~~~~~e 852 (1151)
T 2eyq_A 785 RRLAVKTFVREYD---SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHGQMRERE 852 (1151)
T ss_dssp BCBCEEEEEEECC---HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCSSCCHHH
T ss_pred CccccEEEEecCC---HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh--CCCCeEEEEeCCCCHHH
Confidence 1223444444332 22222233332 35679999999999999999999987 56889999999998653
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=180.97 Aligned_cols=186 Identities=16% Similarity=0.203 Sum_probs=129.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhh-hhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-CcccCCcccE
Q 026925 2 GMIISPTRELSSQIYHVAQPFI-STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLEI 79 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-~~~~~~~l~~ 79 (230)
+|+++|||+||+|+++.+++.. ... ++++..++|+...... . ..+++|+|+|||++..++++. ....++++++
T Consensus 975 avyi~P~raLa~q~~~~~~~~f~~~~-g~~V~~ltGd~~~~~~--~--~~~~~IiV~TPEkld~llr~~~~~~~l~~v~l 1049 (1724)
T 4f92_B 975 CVYITPMEALAEQVYMDWYEKFQDRL-NKKVVLLTGETSTDLK--L--LGKGNIIISTPEKWDILSRRWKQRKNVQNINL 1049 (1724)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTTS-CCCEEECCSCHHHHHH--H--HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSE
T ss_pred EEEEcChHHHHHHHHHHHHHHhchhc-CCEEEEEECCCCcchh--h--cCCCCEEEECHHHHHHHHhCcccccccceeeE
Confidence 7999999999999999987654 444 8899999998654322 2 256899999999998888651 2234789999
Q ss_pred EEEeccccccccccHHHHHHHH-------HhCCCCCcEEEEeecCchHHHHHHHhccCCCe-EEEEeccCcccccccchh
Q 026925 80 LVLDEADRLLDMGFQKQISYII-------SRLPKLRRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHVSASSQ 151 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~-------~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~ 151 (230)
+|+||+|.+.+. .+..++.++ ...+...|++++|||+++ ...++++.-.++. ...+..
T Consensus 1050 vViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~------------ 1115 (1724)
T 4f92_B 1050 FVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHP------------ 1115 (1724)
T ss_dssp EEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCG------------
T ss_pred EEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCC------------
Confidence 999999977653 455444443 445678999999999986 4666665433332 222222
Q ss_pred ccccCCCCccceEEEEEcCCCCcHHH-------HHHHHH-hCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 152 QLASSKTPLGLHLEYLECEPDEKPSQ-------LVDLLI-KNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~k~~~-------l~~ll~-~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
...|..++.++...+..+.... +...+. ....+++||||+|++.|+.++..|...
T Consensus 1116 ----~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~ 1178 (1724)
T 4f92_B 1116 ----NVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTT 1178 (1724)
T ss_dssp ----GGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred ----CCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHH
Confidence 3456666666666555443222 222232 446789999999999999998877543
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=171.90 Aligned_cols=114 Identities=13% Similarity=0.175 Sum_probs=89.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcc-cCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~-~~~~l~~l 80 (230)
+|||+||++|+.|+.+.+++++... ++++..++|+.+...+...+ ..+++|+|+||+++.+.+.. +.+ .+.+++++
T Consensus 299 vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~~-~~~~~IvI~Tp~~L~~~l~~-~~~~~l~~~~li 375 (936)
T 4a2w_A 299 VVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFED-GTLTSLSIFTLM 375 (936)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHHH-HHHCSEEEECHHHHHHHHHS-SSCCCGGGCSEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEECCcchhhHHHHh-ccCCCEEEecHHHHHHHHHc-CccccccCCCEE
Confidence 7999999999999999999998766 78999999988766555555 35689999999999999987 656 78999999
Q ss_pred EEeccccccccc-cHHHHHHHHHhC----CCCCcEEEEeecCc
Q 026925 81 VLDEADRLLDMG-FQKQISYIISRL----PKLRRTGLFSATQT 118 (230)
Q Consensus 81 VvDEad~l~~~~-~~~~~~~i~~~l----~~~~q~i~~SAt~~ 118 (230)
|+||||++.+.+ +...+..+.... ....|++++|||.+
T Consensus 376 ViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 376 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred EEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 999999998764 444443443331 45689999999984
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=162.41 Aligned_cols=195 Identities=16% Similarity=0.208 Sum_probs=128.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++||++||.|+++.++++.... ++++..++|+....+. ...+.++.++|+||||+.+.+ .+.+.++
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l 491 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNL 491 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCC
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCC
Confidence 58999999999999999999998776 7899999998876543 334445679999999987633 3568899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (230)
+++|+||+|++.. .. ...+.......+++++|||..+....+. ++.+......... ..
T Consensus 492 ~lVVIDEaHr~g~---~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~---------------p~ 549 (780)
T 1gm5_A 492 GLVIIDEQHRFGV---KQ--REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEM---------------PP 549 (780)
T ss_dssp CEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCC---------------CS
T ss_pred ceEEecccchhhH---HH--HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeecc---------------CC
Confidence 9999999999622 11 1122223356899999999877544433 3333221111111 00
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeEEEEcCch--------hHHHHHHHHhhh-hhccCCceEEeccCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKIIIYFMTC--------ACVDYWGVVLPR-LAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~--------~~~~~l~~~L~~-~~~~~g~~~~~lh~~~~ 226 (230)
....+... ..+..+...+...+.. ..+++++|||++. ..|+.++..|.+ . .+|+++..+||+|+
T Consensus 550 ~r~~i~~~---~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~--~~~~~v~~lHG~m~ 624 (780)
T 1gm5_A 550 GRKEVQTM---LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV--FPEFKLGLMHGRLS 624 (780)
T ss_dssp SCCCCEEC---CCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSC--C---CBCCCCSSSC
T ss_pred CCcceEEE---EeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh--cCCCcEEEEeCCCC
Confidence 11122221 1233444555555543 3567899999965 457889999987 3 24889999999999
Q ss_pred CCC
Q 026925 227 QVG 229 (230)
Q Consensus 227 ~~e 229 (230)
++|
T Consensus 625 ~~e 627 (780)
T 1gm5_A 625 QEE 627 (780)
T ss_dssp CSC
T ss_pred HHH
Confidence 876
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-20 Score=169.18 Aligned_cols=115 Identities=13% Similarity=0.203 Sum_probs=84.1
Q ss_pred eEEEeCChhhHHHH-HHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-----CCcccCC
Q 026925 2 GMIISPTRELSSQI-YHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-----MDVLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~-~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-----~~~~~~~ 75 (230)
+|||+||++|+.|+ .+.+++++.. ++++..+.|+....+....+ .++++|+|+||+++...+.. ...+.+.
T Consensus 59 vlvl~P~~~L~~Q~~~~~l~~~~~~--~~~v~~~~g~~~~~~~~~~~-~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~ 135 (699)
T 4gl2_A 59 VIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQILENSLLNLENGEDAGVQLS 135 (699)
T ss_dssp BCCEESCSHHHHHHHHHTHHHHHTT--TSCEEEEC----CCCCHHHH-HHSCSEEEEEHHHHHHHTC--------CCCGG
T ss_pred EEEEECCHHHHHHHHHHHHHHHcCc--CceEEEEeCCcchhhHHHhh-hcCCCEEEECHHHHHHHHhccccccccceecc
Confidence 68999999999999 9999999754 47899999887665554555 47899999999999988832 1457789
Q ss_pred cccEEEEeccccccccc-cHHHHHHHHHhC-------------CCCCcEEEEeecCch
Q 026925 76 NLEILVLDEADRLLDMG-FQKQISYIISRL-------------PKLRRTGLFSATQTE 119 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~-~~~~~~~i~~~l-------------~~~~q~i~~SAt~~~ 119 (230)
+++++||||||++...+ +...+..++... .+..|++++|||.+.
T Consensus 136 ~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 136 DFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp GCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred cCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 99999999999986543 333333332221 156799999999986
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-20 Score=159.26 Aligned_cols=200 Identities=16% Similarity=0.134 Sum_probs=131.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||+||++|+.|+.+.++++... ++.++..+.|+.+..++ + .++++|+|+||+.+. .. ....+++++++|
T Consensus 160 vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~---~-~~~~~I~i~T~~~l~---~~-~~~~~~~~~liI 230 (510)
T 2oca_A 160 ILIIVPTTALTTQMADDFVDYRLF-SHAMIKKIGGGASKDDK---Y-KNDAPVVVGTWQTVV---KQ-PKEWFSQFGMMM 230 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSS-CGGGEEECGGGCCTTGG---G-CTTCSEEEEEHHHHT---TS-CGGGGGGEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHhhcC-CccceEEEecCCccccc---c-ccCCcEEEEeHHHHh---hc-hhhhhhcCCEEE
Confidence 799999999999999999988543 36788888888765443 2 477999999999643 33 445678999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHH-HHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL-SKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||+|++.. ..+..+++.++...+++++|||.++..... ....+.++........... ..+ ...+.
T Consensus 231 iDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~l~~~ 297 (510)
T 2oca_A 231 NDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLM------EDG---QVTEL 297 (510)
T ss_dssp EETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC------------------CC
T ss_pred EECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHh------hCC---cCCCc
Confidence 999999865 456778888888889999999997653221 1111223332222111000 000 11111
Q ss_pred cceEEEEEcC---------------------CCCcHHHHHHHHHhC---CCCeEEEEcCchhHHHHHHHHhhhhhccCCc
Q 026925 161 GLHLEYLECE---------------------PDEKPSQLVDLLIKN---KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL 216 (230)
Q Consensus 161 ~i~~~~~~~~---------------------~~~k~~~l~~ll~~~---~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~ 216 (230)
.+.......+ ...|...+.+++... ++++++|||+ .++|+.++..|.+. +.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----~~ 372 (510)
T 2oca_A 298 KINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE----YD 372 (510)
T ss_dssp EEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT----CS
T ss_pred eEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc----CC
Confidence 1121122111 123444555666543 5667777777 88999999999988 77
Q ss_pred eEEeccCCCCCC
Q 026925 217 SLIPLHGKMKQV 228 (230)
Q Consensus 217 ~~~~lh~~~~~~ 228 (230)
++..+||+|+++
T Consensus 373 ~v~~~~g~~~~~ 384 (510)
T 2oca_A 373 KVYYVSGEVDTE 384 (510)
T ss_dssp SEEEESSSTTHH
T ss_pred CeEEEECCCCHH
Confidence 999999999864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=149.90 Aligned_cols=196 Identities=14% Similarity=0.103 Sum_probs=129.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|+++||.|+...+........+..++.-...... ...+.+|+++||+++.+.+.. . ..+.+++++|
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~-------~~~~~~I~v~T~G~l~r~l~~-~-~~l~~~~~lI 213 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK-------TSNKTILKYMTDGMLLREAME-D-HDLSRYSCII 213 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE-------CCTTCSEEEEEHHHHHHHHHH-S-TTCTTEEEEE
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc-------cCCCCCEEEECHHHHHHHHhh-C-ccccCCCEEE
Confidence 688999999999998876554321112222221111111 135689999999999987765 3 4589999999
Q ss_pred Eecccc-ccccc-cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 82 LDEADR-LLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 82 vDEad~-l~~~~-~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
+||+|. .++.. ....+..+.... +..|++++|||++. ..+. .++.++..+.+... .
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr------------------~ 271 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGR------------------T 271 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCC------------------C
T ss_pred ecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHH-HHhcCCCcccccCc------------------c
Confidence 999995 55533 334455555444 57899999999964 3444 45555444443322 2
Q ss_pred ccceEEEEEcCCCCcHHH----HHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh-------hccCCceEEeccCCCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQ----LVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL-------AVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~----l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~-------~~~~g~~~~~lh~~~~~~ 228 (230)
..+.+++...+..++... +..+......+++||||+++++|+.++..|.+. ....++.+.++||+|+++
T Consensus 272 ~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~ 351 (773)
T 2xau_A 272 YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPH 351 (773)
T ss_dssp CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHH
T ss_pred cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHH
Confidence 235555555555554433 333444456789999999999999999999851 112488999999999864
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-18 Score=147.88 Aligned_cols=164 Identities=17% Similarity=0.217 Sum_probs=103.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhh-------CCccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-------MDVLD 73 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~-------~~~~~ 73 (230)
+++|++||++||.|+++.++.+ ++. . .++. . -.++||+++.+++.. .....
T Consensus 39 ~~lil~Ptr~La~Q~~~~l~~~-----~v~--~-~~~~-------------~-~~v~Tp~~l~~~l~~~~l~~~~~~~~~ 96 (440)
T 1yks_A 39 RTLVLAPTRVVLSEMKEAFHGL-----DVK--F-HTQA-------------F-SAHGSGREVIDAMCHATLTYRMLEPTR 96 (440)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CEE--E-ESSC-------------C-CCCCCSSCCEEEEEHHHHHHHHTSSSC
T ss_pred eEEEEcchHHHHHHHHHHHhcC-----CeE--E-eccc-------------c-eeccCCccceeeecccchhHhhhCccc
Confidence 4899999999999999887743 222 1 1110 0 037888776554433 01234
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhC-CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhc
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQ 152 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (230)
+++++++|+||+|++ +.++...+..+.... +...|++++|||+++.+..+... ...+
T Consensus 97 ~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~----~~~~----------------- 154 (440)
T 1yks_A 97 VVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPHS----NGEI----------------- 154 (440)
T ss_dssp CCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC----SSCE-----------------
T ss_pred ccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhc----CCCe-----------------
Confidence 799999999999998 444444444444333 36799999999998764322221 1100
Q ss_pred cccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 153 LASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
......++...+...+ ..+... ++++||||++++.|+.++..|.+. |+++..+||+
T Consensus 155 ----------~~~~~~~~~~~~~~~~-~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~ 210 (440)
T 1yks_A 155 ----------EDVQTDIPSEPWNTGH-DWILAD-KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK 210 (440)
T ss_dssp ----------EEEECCCCSSCCSSSC-HHHHHC-CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS
T ss_pred ----------eEeeeccChHHHHHHH-HHHHhc-CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch
Confidence 0001111222222222 223333 579999999999999999999988 9999999994
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-18 Score=148.92 Aligned_cols=171 Identities=13% Similarity=0.116 Sum_probs=115.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++|||+||.|+++.++. ..+. ..++... .....+..+-+.|.+.+...+.. . ..+++++++
T Consensus 217 ~vLvl~PtreLa~Qi~~~l~~-------~~v~-~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~-~-~~l~~~~~i 281 (618)
T 2whx_A 217 RTLILAPTRVVAAEMEEALRG-------LPIR-YQTPAVK-----SDHTGREIVDLMCHATFTTRLLS-S-TRVPNYNLI 281 (618)
T ss_dssp CEEEEESSHHHHHHHHHHTTT-------SCEE-ECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHH-C-SSCCCCSEE
T ss_pred eEEEEcChHHHHHHHHHHhcC-------Ccee-Eecccce-----eccCCCceEEEEChHHHHHHHhc-c-ccccCCeEE
Confidence 479999999999999877762 2222 2111100 01112345667777777665554 2 458999999
Q ss_pred EEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++ +.++...+..+.+.++ ...|+++||||+++.+..+.. .++..+.+... .
T Consensus 282 ViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-----------------~- 339 (618)
T 2whx_A 282 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-----------------I- 339 (618)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-----------------C-
T ss_pred EEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-----------------C-
Confidence 99999998 7778888888888875 679999999999876443222 23333333222 0
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
+ .++...++..+... .+++||||+|++.|+.++..|.+. |+++..+||+
T Consensus 340 ----------~-~~~~~~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~ 388 (618)
T 2whx_A 340 ----------P-ERSWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK 388 (618)
T ss_dssp ----------C-SSCCSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT
T ss_pred ----------C-HHHHHHHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH
Confidence 0 01111222333333 569999999999999999999988 9999999986
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=141.09 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=113.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++||++||.|+++.+. +..+....+.... . ...+..|.++||+.+...+.. . ..+++++++
T Consensus 50 ~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~-----~-~~~~~~i~~~t~~~l~~~l~~-~-~~l~~~~~i 114 (451)
T 2jlq_A 50 RTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKS-----D-HTGREIVDLMCHATFTTRLLS-S-TRVPNYNLI 114 (451)
T ss_dssp CEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSC-----C-CCSSCCEEEEEHHHHHHHHHH-C-SCCCCCSEE
T ss_pred cEEEECCCHHHHHHHHHHhc-------Cceeeeeeccccc-----c-CCCCceEEEEChHHHHHHhhC-c-ccccCCCEE
Confidence 47999999999999988774 2233222221111 0 124567999999998887765 2 568899999
Q ss_pred EEeccccccccccHHHHHHHHHh-CCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISR-LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~-l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||||++ +..+...+..+... .+...|++++|||++..+.. .+..++..+..... .+
T Consensus 115 ViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~-----------------~p 173 (451)
T 2jlq_A 115 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIERE-----------------IP 173 (451)
T ss_dssp EEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECC-----------------CC
T ss_pred EEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchh---hhcCCCceEecCcc-----------------CC
Confidence 99999977 44444433333322 34579999999999874332 23334444433211 11
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.. ....+...+... .+++||||+|+++|+.++..|.+. |+++..+||++.
T Consensus 174 ~~------------~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~ 223 (451)
T 2jlq_A 174 ER------------SWNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF 223 (451)
T ss_dssp SS------------CCSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH
T ss_pred ch------------hhHHHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH
Confidence 00 000112233333 458999999999999999999988 999999999875
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-18 Score=146.49 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=126.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCce-EEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
.+|||+||++|+.|+.+.+++| +++ +..+.|+.. ..++|+|+||+.+...+.. ...++++
T Consensus 135 ~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~Ivv~T~~~l~~~~~~----~~~~~~l 195 (472)
T 2fwr_A 135 PTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEK----LGNRFML 195 (472)
T ss_dssp CEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCB----------CCCSEEEEEHHHHHHTHHH----HTTTCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCcceEEECCCcC----------CcCCEEEEEcHHHHHHHHH----hcCCCCE
Confidence 3799999999999999998884 567 777777653 3578999999998776643 1246899
Q ss_pred EEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch-------------------HHHHHHHhccCCCeEEEEecc
Q 026925 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE-------------------AVEELSKAGLRNPVRVEVRAE 140 (230)
Q Consensus 80 lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~-------------------~~~~~~~~~~~~~~~i~~~~~ 140 (230)
+|+||+|++.+.+|.. +.+.+ ...+++++|||... ....+...++..+....+...
T Consensus 196 iIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 270 (472)
T 2fwr_A 196 LIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVP 270 (472)
T ss_dssp EEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEEC
T ss_pred EEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcC
Confidence 9999999999887765 45555 46789999999862 244444444444433222111
Q ss_pred Cccc--ccccch-hcccc--------CCCCccceEE---------------------EEEcCCCCcHHHHHHHHHhCCCC
Q 026925 141 SKSH--HVSASS-QQLAS--------SKTPLGLHLE---------------------YLECEPDEKPSQLVDLLIKNKSK 188 (230)
Q Consensus 141 ~~~~--~~~~~~-~~~~~--------~~~~~~i~~~---------------------~~~~~~~~k~~~l~~ll~~~~~~ 188 (230)
.... ...... ..+.+ ......+.+. .+.+....|...+.++++...++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 350 (472)
T 2fwr_A 271 LAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKD 350 (472)
T ss_dssp CCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCC
Confidence 0000 000000 00000 0000011000 01123456778889999888889
Q ss_pred eEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 189 KIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 189 ~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
++||||++++.++.++..|. +..+||+++++
T Consensus 351 k~lvF~~~~~~~~~l~~~l~---------~~~~~g~~~~~ 381 (472)
T 2fwr_A 351 KIIIFTRHNELVYRISKVFL---------IPAITHRTSRE 381 (472)
T ss_dssp CBCCBCSCHHHHHHHHHHTT---------CCBCCSSSCSH
T ss_pred cEEEEECCHHHHHHHHHHhC---------cceeeCCCCHH
Confidence 99999999999999998874 34689998764
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=134.47 Aligned_cols=172 Identities=15% Similarity=0.168 Sum_probs=108.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||++||.|+++.+. ++.+....++... ....+..+.+.|.+.+...+.. ...+++++++
T Consensus 33 ~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~v 97 (431)
T 2v6i_A 33 RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS------ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLY 97 (431)
T ss_dssp CEEEEESSHHHHHHHHHHTT-------TSCEEEC---------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEE
T ss_pred CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc------cCCCCceEEEEchHHHHHHHhc--CccccCCCEE
Confidence 47999999999999887665 3344444443211 1123455677788887665544 3458899999
Q ss_pred EEeccccccccccHHHHHHHHHhC-CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l-~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
|+||+|++ +..+......+.... +...|++++|||+++.+..+... ++.......
T Consensus 98 ViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~---~~~i~~~~~-------------------- 153 (431)
T 2v6i_A 98 IMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS---NSPIIDEET-------------------- 153 (431)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC---SSCCEEEEC--------------------
T ss_pred EEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC---CCceeeccc--------------------
Confidence 99999997 443444444444432 56899999999998742211100 000011000
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~ 225 (230)
.. +..+...+...+... .+++||||+++++|+.++..|.+. |+++..+||++
T Consensus 154 --------~~-~~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~ 205 (431)
T 2v6i_A 154 --------RI-PDKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT 205 (431)
T ss_dssp --------CC-CSSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT
T ss_pred --------cC-CHHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc
Confidence 01 112222233445444 468999999999999999999988 99999999974
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-17 Score=142.55 Aligned_cols=208 Identities=12% Similarity=0.082 Sum_probs=97.8
Q ss_pred eEEEeCChhhHHHHH-HHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC---CcccCCcc
Q 026925 2 GMIISPTRELSSQIY-HVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNL 77 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~-~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~---~~~~~~~l 77 (230)
+|||+||++|+.|+. +.++.+. ..+..+.++. ...+.+|+|+||+++....... ..+...++
T Consensus 238 vlil~P~~~L~~Q~~~~~~~~~~-----~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 238 ILFLADRNVLVDDPKDKTFTPFG-----DARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp EEEEEC-----------CCTTTC-----SSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred EEEEeCCHHHHHHHHHHHHHhcc-----hhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 799999999999998 7776653 2333333321 1467899999999998876421 33556789
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeE------------------EEEec
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVR------------------VEVRA 139 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~------------------i~~~~ 139 (230)
+++|+||||++...+ ...+..+++.++ ..+++++|||.......-...++..+.. +.+..
T Consensus 304 ~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 381 (590)
T 3h1t_A 304 DLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVIS 381 (590)
T ss_dssp SEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEE
T ss_pred CEEEEECCccccccc-hHHHHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeee
Confidence 999999999987643 245566777776 4789999999764333323333333322 11111
Q ss_pred cCcccccccchhccccCCCCccceEEEEEcCC-------CCcHHH----HHHHHHh-CCCCeEEEEcCchhHHHHHHHHh
Q 026925 140 ESKSHHVSASSQQLASSKTPLGLHLEYLECEP-------DEKPSQ----LVDLLIK-NKSKKIIIYFMTCACVDYWGVVL 207 (230)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~k~~~----l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L 207 (230)
.............. ......+....+.... ..+... +...++. ...+++||||+++++|+.++..|
T Consensus 382 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L 459 (590)
T 3h1t_A 382 EVDAAGWRPSKGDV--DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRAL 459 (590)
T ss_dssp TTCC-------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHH
T ss_pred eeeccccccccccc--cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHH
Confidence 10000000000000 0000000000111110 011222 3333333 35579999999999999999999
Q ss_pred hhhhc----cCCceEEeccCCCCC
Q 026925 208 PRLAV----LKSLSLIPLHGKMKQ 227 (230)
Q Consensus 208 ~~~~~----~~g~~~~~lh~~~~~ 227 (230)
.+... ..+-.+..+||++++
T Consensus 460 ~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 460 NNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp HHHTHHHHTTCTTSEEECSSTTHH
T ss_pred HHhhhhhhccCCCeEEEEeCCChH
Confidence 87610 012237789998864
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-17 Score=148.08 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=99.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhC-------Cccc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-------DVLD 73 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~-------~~~~ 73 (230)
+++|++||++||.|+++.+..+ ++. ...+. + . .++||+++.+++... ....
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~-----~i~--~~~~~---------l-~-----~v~tp~~ll~~l~~~~l~~~l~~~~~ 329 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGL-----PVR--YLTPA---------V-Q-----REHSGNEIVDVMCHATLTHRLMSPLR 329 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CCE--ECCC------------------CCCCSCCCEEEEEHHHHHHHHHSSSC
T ss_pred cEEEEccHHHHHHHHHHHHhcC-----Cee--eeccc---------c-c-----ccCCHHHHHHHHHhhhhHHHHhcccc
Confidence 4899999999999999887754 222 10010 0 0 145555543322220 1246
Q ss_pred CCcccEEEEeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhc
Q 026925 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQ 152 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (230)
+++++++|+||||++ +..+...+..+...++ ...|+++||||+++.+..+... +.....+.
T Consensus 330 l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~-------------- 391 (673)
T 2wv9_A 330 VPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVS-------------- 391 (673)
T ss_dssp CCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEE--------------
T ss_pred cccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEe--------------
Confidence 899999999999998 3333334444444443 6789999999998653322110 00011110
Q ss_pred cccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 153 LASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 153 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
...+...+...+ ..+.. ..+++||||+++++|+.++..|.+. |+++..+||+
T Consensus 392 --------------~~~~~~~~~~~l-~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~ 443 (673)
T 2wv9_A 392 --------------SEIPDRAWSSGF-EWITD-YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK 443 (673)
T ss_dssp --------------CCCCSSCCSSCC-HHHHS-CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS
T ss_pred --------------eecCHHHHHHHH-HHHHh-CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH
Confidence 011111111222 23333 4679999999999999999999988 9999999995
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-16 Score=137.67 Aligned_cols=175 Identities=16% Similarity=0.050 Sum_probs=120.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|||+||.|+++.+.++ ++++..++|+...... -.....+++++|++.+. ....++++|
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~---TpGr~~~il~~T~e~~~---------l~~~v~lvV 244 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQ---PNGKQASHVSCTVEMCS---------VTTPYEVAV 244 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCS---TTCCCCSEEEEEGGGCC---------SSSCEEEEE
T ss_pred eEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEec---CCCcccceeEecHhHhh---------hcccCCEEE
Confidence 589999999999999998875 5688888887654100 00113678888886532 246779999
Q ss_pred EeccccccccccHHHHHHHHHhCC-CCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~-~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (230)
+||||++.+.+++..+..++..++ ...|++++|||.+ .+..+.... ..+..+..... ..+
T Consensus 245 IDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r----------------~~~- 305 (677)
T 3rc3_A 245 IDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKR----------------LTP- 305 (677)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCC----------------SSC-
T ss_pred EecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEeee----------------cch-
Confidence 999999999999999999999888 6889999999953 344444433 33333321111 011
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.. +....- ..+.... +..+|||+|+++|+.++..|.+. |+.+.++||+|+++
T Consensus 306 -l~---~~~~~l-------~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~ 357 (677)
T 3rc3_A 306 -IS---VLDHAL-------ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPG 357 (677)
T ss_dssp -EE---ECSSCC-------CSGGGCC-TTEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHH
T ss_pred -HH---HHHHHH-------HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHH
Confidence 00 000000 1112222 34589999999999999999987 99999999999875
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-16 Score=134.31 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=102.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||.|+++.+.. ..+....+..... ...+..+.+.|.+.+...+.. ...+++++++
T Consensus 52 ~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~~~~~------~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~i 116 (459)
T 2z83_A 52 RTAVLAPTRVVAAEMAEALRG-------LPVRYQTSAVQRE------HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLF 116 (459)
T ss_dssp CEEEEECSHHHHHHHHHHTTT-------SCEEECC--------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEE
T ss_pred cEEEECchHHHHHHHHHHhcC-------ceEeEEecccccC------CCCCcEEEEEchHHHHHHhhc--cccccCCcEE
Confidence 379999999999999888762 2222211111100 023345777888877665553 3568899999
Q ss_pred EEeccccc-----cccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhcccc
Q 026925 81 VLDEADRL-----LDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLAS 155 (230)
Q Consensus 81 VvDEad~l-----~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (230)
|+||||.+ +..++..... .+...|++++|||++..+..+... ..|... +...
T Consensus 117 ViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~-~~~~--------------- 173 (459)
T 2z83_A 117 VMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTDPFPDS--NAPIHD-LQDE--------------- 173 (459)
T ss_dssp EESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCCSSCCC--SSCEEE-EECC---------------
T ss_pred EEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchhhhccC--CCCeEE-eccc---------------
Confidence 99999983 3344333221 236889999999998753222111 122211 1000
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
.+ ..+...+..++... .+++||||+|++.|+.++..|.+. |+++..+||+
T Consensus 174 -------------~~-~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~ 223 (459)
T 2z83_A 174 -------------IP-DRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRK 223 (459)
T ss_dssp -------------CC-SSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTT
T ss_pred -------------CC-cchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHH
Confidence 00 11111122334333 579999999999999999999988 9999999996
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.6e-16 Score=119.50 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=75.9
Q ss_pred eEEEeCChhhHHH-HHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCC-----cccCC
Q 026925 2 GMIISPTRELSSQ-IYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-----VLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q-~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~-----~~~~~ 75 (230)
+||++||++|+.| +.+.++.+... ++++..+.|+.........+ ..+++|+|+||+++...+.... .+.+.
T Consensus 85 ~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~ 161 (216)
T 3b6e_A 85 VIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQILENSLLNLENGEDAGVQLS 161 (216)
T ss_dssp EEEEESSHHHHHHHHHHTHHHHHTT--TSCEEECCC---CCCCHHHH-HHHCSEEEEEHHHHHHHHHC-------CCCGG
T ss_pred EEEEECHHHHHHHHHHHHHHHHhcc--CceEEEEeCCcccchhHHhh-ccCCCEEEECHHHHHHHHhccCcccccccchh
Confidence 7999999999999 88889988755 57888888876544444444 2468999999999999887622 15678
Q ss_pred cccEEEEeccccccccccHHHH-HHHHHhC-------------CCCCcEEEEeec
Q 026925 76 NLEILVLDEADRLLDMGFQKQI-SYIISRL-------------PKLRRTGLFSAT 116 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~~~-~~i~~~l-------------~~~~q~i~~SAt 116 (230)
+++++|+||||++.+.++...+ ..++... .+..+++++|||
T Consensus 162 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 162 DFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 9999999999999876654443 3332221 156899999998
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-15 Score=115.22 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=85.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++++|+++|+.|+.+.+........+..++.-...... ....+++|+|+||+++.+++.. .+++++++|
T Consensus 112 ~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lV 181 (235)
T 3llm_A 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESI------LPRPHASIMFCTVGVLLRKLEA----GIRGISHVI 181 (235)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEE------CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEE
T ss_pred EEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhc------cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEE
Confidence 688999999999998888766543224444432222111 0025588999999999999876 389999999
Q ss_pred Eeccccc-cccccH-HHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCe
Q 026925 82 LDEADRL-LDMGFQ-KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (230)
Q Consensus 82 vDEad~l-~~~~~~-~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~ 133 (230)
+||||.+ ++.++. ..++.+.... ++.|++++|||++.+. +.+.+...|.
T Consensus 182 lDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 182 VDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred EECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 9999986 677766 5667777666 4789999999999865 5554444443
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=133.87 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 171 PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 171 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...|...+.++++...+.++||||+++..++.++..|.+.. |+++..+||+|++++
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~---g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE---GIRAAVFHEGMSIIE 542 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT---CCCEEEECTTSCTTH
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc---CCcEEEEeCCCCHHH
Confidence 34578999999998888999999999999999999999543 999999999999864
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.9e-15 Score=135.23 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=79.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc-ccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~-~~~~~l~~l 80 (230)
+|||+|+++|+.|+.+.+..+.... +.++.+.......+...+++|+|+||+++..++..... ..+++..++
T Consensus 333 vLvlvpr~eL~~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lv 405 (1038)
T 2w00_A 333 VFFVVDRKDLDYQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVF 405 (1038)
T ss_dssp EEEEECGGGCCHHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEE
Confidence 7999999999999999999886431 12344444444555346799999999999998875221 245678899
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
|+||||++.. ......|.+.+| +.++++||||...
T Consensus 406 IiDEAHrs~~---~~~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 406 IFDECHRSQF---GEAQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp EEESCCTTHH---HHHHHHHHHHCS-SEEEEEEESSCCC
T ss_pred EEEccchhcc---hHHHHHHHHhCC-cccEEEEeCCccc
Confidence 9999999754 334556777776 4799999999864
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-13 Score=121.84 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=71.6
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHH-HHHHhhCC-----cccC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDF 74 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l-~~~l~~~~-----~~~~ 74 (230)
+|+|++||++||.|.+.++..+...+ ++++..+.||.+...... ..++||+||||++| .++++.+- .+.+
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~l-GLsv~~i~Gg~~~~~r~~---ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~ 197 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGL-GLSVGVIQHASTPAERRK---AYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTT-TCCEEECCTTCCHHHHHH---HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCS
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHHHHH---HcCCCEEEECchhhhhHHHHHhhhcchhhccc
Confidence 47999999999999999999999988 899999999987543332 24699999999999 78887621 2457
Q ss_pred C---cccEEEEecccccc
Q 026925 75 R---NLEILVLDEADRLL 89 (230)
Q Consensus 75 ~---~l~~lVvDEad~l~ 89 (230)
+ ++.++|+||+|.|+
T Consensus 198 r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 198 RHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CSSSSSCEEEETTHHHHT
T ss_pred ccCCCcceEEEechHHHH
Confidence 7 89999999999997
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=116.98 Aligned_cols=106 Identities=22% Similarity=0.182 Sum_probs=82.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++|+.|+.+.++++.... +..+..+.++..... .. ..+++|+|+||+++.. . ....+.+++++|
T Consensus 160 ~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~~~~~~~~~~---~~-~~~~~I~v~T~~~l~~---~-~~~~~~~~~~vI 230 (282)
T 1rif_A 160 ILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDD---KY-KNDAPVVVGTWQTVVK---Q-PKEWFSQFGMMM 230 (282)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTCSSTT---CC-CTTCSEEEECHHHHTT---S-CGGGGGGEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHhcccc-cceEEEEeCCCcchh---hh-ccCCcEEEEchHHHHh---h-HHHHHhhCCEEE
Confidence 7999999999999999999986443 567777777765432 11 2568999999987533 2 334578899999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchH
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~ 120 (230)
+||||++.+ +.+..+++.+....+++++|||+++.
T Consensus 231 iDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 231 NDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp EETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTT
T ss_pred EECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCc
Confidence 999999864 46677888887889999999999765
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=122.92 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=70.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||||+ .|+.|+.++++++. |+.++..+.|+... ....+++|+|+||+++..... +...+++++|
T Consensus 89 ~LIv~P~-~l~~qw~~e~~~~~---~~~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vI 154 (500)
T 1z63_A 89 SLVICPL-SVLKNWEEELSKFA---PHLRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIV 154 (500)
T ss_dssp EEEEECS-TTHHHHHHHHHHHC---TTSCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEE
T ss_pred EEEEccH-HHHHHHHHHHHHHC---CCceEEEEecCchh------ccccCCcEEEeeHHHHhccch----hcCCCcCEEE
Confidence 6999994 58899999999885 35677666665422 113568999999998755332 3345678999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+||||++.+.+. .....+..++ ..+.+++|||..
T Consensus 155 vDEaH~~kn~~~--~~~~~l~~l~-~~~~l~LTaTP~ 188 (500)
T 1z63_A 155 IDEAQNIKNPQT--KIFKAVKELK-SKYRIALTGTPI 188 (500)
T ss_dssp EETGGGGSCTTS--HHHHHHHTSC-EEEEEEECSSCS
T ss_pred EeCccccCCHhH--HHHHHHHhhc-cCcEEEEecCCC
Confidence 999999976542 2334455554 456799999973
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=115.44 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=71.7
Q ss_pred cEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhC--C
Q 026925 109 RTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN--K 186 (230)
Q Consensus 109 q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~ 186 (230)
.+.++|+|......++.+.|-.+ .+.++... -....-.+..+.....+|...+...+... .
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnk---------------p~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~ 473 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGME--VVVIPTHK---------------PMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKK 473 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCCC--EEECCCSS---------------CCCCEECCCEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHeEECCCCchHHHHHHHHhCCe--EEEECCCC---------------CcceeecCcEEEecHHHHHHHHHHHHHHHhhC
Confidence 57899999998888887777433 33333321 01111122345556778999999888753 5
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
++|+||||+|++.++.++..|.+. |++..++||+..+
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~----Gi~~~vLhgkq~~ 510 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKK----GIPHQVLNAKYHE 510 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTT----TCCCEEECSCHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCchH
Confidence 789999999999999999999988 9999999998544
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-12 Score=117.06 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=73.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH-----------HhcCCcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI-----------EEEGANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l-----------~~~~~~Iiv~TP~~l~~~l~~~~ 70 (230)
+||||| ..|+.|+.+.+.+++ |++++....|+.......... ...+++|+|+|++.+......
T Consensus 289 ~LIV~P-~sll~qW~~E~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-- 362 (800)
T 3mwy_W 289 HIIVVP-LSTMPAWLDTFEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-- 362 (800)
T ss_dssp EEEECC-TTTHHHHHHHHHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--
T ss_pred EEEEEC-chHHHHHHHHHHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--
Confidence 589999 778889899988875 467888777776554443332 124689999999998764432
Q ss_pred cccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 71 VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 71 ~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
+...+++++|+||||++-+.. ......+..++ ....+++|||.
T Consensus 363 -l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 363 -LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSFK-VANRMLITGTP 405 (800)
T ss_dssp -HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTSE-EEEEEEECSCC
T ss_pred -HhcCCcceeehhhhhhhcCch--hHHHHHHHHhh-hccEEEeeCCc
Confidence 333467899999999986433 22333455553 44568889996
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=109.87 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=72.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHH--HHHHHHhc-----CCcEEEEcChHHHHHHhhCCcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA--DVKKIEEE-----GANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~--~~~~l~~~-----~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
+|||+|+ .|+.|+.+++.++... .+.+..+.++..... ........ .++|+|+|++.+.... ..+..
T Consensus 117 ~LiV~P~-sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~ 190 (644)
T 1z3i_X 117 VIVVSPS-SLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---EVLHK 190 (644)
T ss_dssp EEEEECH-HHHHHHHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---TTTTT
T ss_pred EEEEecH-HHHHHHHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH---HHhhc
Confidence 6899996 7889999999999755 456667776654322 22222211 4789999999886544 33455
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecC
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~ 117 (230)
.+++++|+||||++-+.. .. ....+..++ ....+++|||.
T Consensus 191 ~~~~~vI~DEaH~ikn~~-~~-~~~al~~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKNSD-NQ-TYLALNSMN-AQRRVLISGTP 230 (644)
T ss_dssp SCCCEEEETTGGGCCTTC-HH-HHHHHHHHC-CSEEEEECSSC
T ss_pred CCccEEEEECceecCChh-hH-HHHHHHhcc-cCcEEEEecCc
Confidence 678899999999986543 12 222333443 44678899995
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=94.81 Aligned_cols=94 Identities=20% Similarity=0.144 Sum_probs=72.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCce-EEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++|++||++|+.|+.+.+.++ +++ +..+.|+.. ...+|+|+||+.+...... ...+++++
T Consensus 136 ~liv~P~~~L~~q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~i~v~T~~~l~~~~~~----~~~~~~ll 196 (237)
T 2fz4_A 136 TLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEK----LGNRFMLL 196 (237)
T ss_dssp EEEEESSHHHHHHHHHHHGGG-----CGGGEEEESSSCB----------CCCSEEEEEHHHHHHTHHH----HTTTCSEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCCeEEEEeCCCC----------CcCCEEEEeHHHHHhhHHH----hcccCCEE
Confidence 789999999999999988884 566 777777653 3578999999998765543 12568999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
|+||+|++.+..+.. +...++ ..+++++|||...
T Consensus 197 IiDEaH~l~~~~~~~----i~~~~~-~~~~l~LSATp~r 230 (237)
T 2fz4_A 197 IFDEVHHLPAESYVQ----IAQMSI-APFRLGLTATFER 230 (237)
T ss_dssp EEECSSCCCTTTHHH----HHHTCC-CSEEEEEEESCC-
T ss_pred EEECCccCCChHHHH----HHHhcc-CCEEEEEecCCCC
Confidence 999999998776543 555554 6788999999874
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=7e-10 Score=99.07 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred EcChHHHHHHhhCCcccCCcccEEEEecccccccc--ccHHH----HHHHHHh------------------CCCCCcEEE
Q 026925 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM--GFQKQ----ISYIISR------------------LPKLRRTGL 112 (230)
Q Consensus 57 ~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~--~~~~~----~~~i~~~------------------l~~~~q~i~ 112 (230)
+||++|.+++.. + .++|+||+|++++. ++... ...+... .+...|+++
T Consensus 320 ~tpg~LlDyl~~-~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 391 (661)
T 2d7d_A 320 STPYTLLDYFPD-D-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVY 391 (661)
T ss_dssp CCCBCGGGGSCS-S-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEE
T ss_pred CCccHHHHHccc-C-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEE
Confidence 899999888754 2 28999999998642 11111 1111111 123678999
Q ss_pred EeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHh--CCCCeE
Q 026925 113 FSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIK--NKSKKI 190 (230)
Q Consensus 113 ~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~--~~~~~~ 190 (230)
||||.++...... .........+. ...... +...+...+...+...+.. ..+.++
T Consensus 392 ~SAT~~~~~~~~~----~~~~~~~~r~~---------------~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~v 448 (661)
T 2d7d_A 392 VSATPGPYEIEHT----DEMVEQIIRPT---------------GLLDPL----IDVRPIEGQIDDLIGEIQARIERNERV 448 (661)
T ss_dssp ECSSCCHHHHHHC----SSCEEECCCTT---------------CCCCCE----EEEECSTTHHHHHHHHHHHHHTTTCEE
T ss_pred EecCCChhHHHhh----hCeeeeeeccc---------------CCCCCe----EEEecccchHHHHHHHHHHHHhcCCeE
Confidence 9999986542221 11111111111 000111 1112333455555555543 256799
Q ss_pred EEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 191 IIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 191 lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
||||+|+..|+.++..|.+. |+++..+||++++.
T Consensus 449 lVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~ 482 (661)
T 2d7d_A 449 LVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTL 482 (661)
T ss_dssp EEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHH
T ss_pred EEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHH
Confidence 99999999999999999998 99999999998754
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-10 Score=86.23 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=59.6
Q ss_pred HhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHH
Q 026925 126 KAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGV 205 (230)
Q Consensus 126 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~ 205 (230)
..|+.+|..+.+... .....++.|.++.+++.+|...+.+++...+ +++||||++++.|+.++.
T Consensus 9 ~~~~~~p~~i~v~~~---------------~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~ 72 (191)
T 2p6n_A 9 SGVDLGTENLYFQSM---------------GAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHE 72 (191)
T ss_dssp ----------------------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHH
T ss_pred ccccCCCEEEEECCC---------------CCCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHH
Confidence 457888988887766 4577899999999999999999999998754 589999999999999999
Q ss_pred HhhhhhccCCceEEeccCCCCCCC
Q 026925 206 VLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 206 ~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.|... |+++..+||+|++++
T Consensus 73 ~L~~~----g~~~~~lhg~~~~~~ 92 (191)
T 2p6n_A 73 YLLLK----GVEAVAIHGGKDQEE 92 (191)
T ss_dssp HHHHH----TCCEEEECTTSCHHH
T ss_pred HHHHc----CCcEEEEeCCCCHHH
Confidence 99988 999999999998753
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=96.88 Aligned_cols=137 Identities=13% Similarity=0.100 Sum_probs=82.0
Q ss_pred EcChHHHHHHhhCCcccCCcccEEEEecccccccc-c--cHHHH---HHHHHh------------------CCCCCcEEE
Q 026925 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-G--FQKQI---SYIISR------------------LPKLRRTGL 112 (230)
Q Consensus 57 ~TP~~l~~~l~~~~~~~~~~l~~lVvDEad~l~~~-~--~~~~~---~~i~~~------------------l~~~~q~i~ 112 (230)
+||++|.+++.. -.++|+||+|++.+. + +.... ..+... .+...|+++
T Consensus 314 ~tp~~LlDyl~~--------~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 385 (664)
T 1c4o_A 314 EPPYTLLDYFPE--------DFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVF 385 (664)
T ss_dssp SCCCCGGGGSCT--------TCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEE
T ss_pred CCchHHHHHHhh--------ccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEE
Confidence 678887777644 238999999998742 1 11111 111111 113578999
Q ss_pred EeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCCCccceEEEEEcCCCCcHHHHHHHHHhC--CCCeE
Q 026925 113 FSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLLIKN--KSKKI 190 (230)
Q Consensus 113 ~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~ 190 (230)
+|||.++...... ...+...... ...... .+...+...+...+...+... .+.++
T Consensus 386 ~SAT~~~~~~~~~------~~~~~~~~r~--------------~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~v 442 (664)
T 1c4o_A 386 VSATPGPFELAHS------GRVVEQIIRP--------------TGLLDP---LVRVKPTENQILDLMEGIRERAARGERT 442 (664)
T ss_dssp EESSCCHHHHHHC------SEEEEECSCT--------------TCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEE
T ss_pred EecCCCHHHHHhh------hCeeeeeecc--------------CCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEE
Confidence 9999986532220 1111111110 000000 011223344555555555432 56799
Q ss_pred EEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 191 IIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 191 lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
||||+|+..|+.++..|.+. |+++..+||++++.
T Consensus 443 lVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~ 476 (664)
T 1c4o_A 443 LVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAF 476 (664)
T ss_dssp EEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHH
T ss_pred EEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHH
Confidence 99999999999999999998 99999999998754
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.1e-10 Score=81.77 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.++.|+++.++..+|...+.++++....+++||||++++.|+.++..|... |+++..+||+|++++
T Consensus 4 ~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~ 73 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQED 73 (163)
T ss_dssp --CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred ccCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHH
Confidence 4567789999999999999999999999888889999999999999999999988 999999999998653
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.94 E-value=9.6e-10 Score=81.85 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=61.2
Q ss_pred CCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 158 TPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 158 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
++.++.|+++.+++.+|...+.++++....+++||||+++..|+.++..|... |+++..+||+|++++
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEE 69 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHH
Confidence 35788999999999999999999999988899999999999999999999988 999999999998653
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=81.10 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=62.5
Q ss_pred CCCccceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 157 KTPLGLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 157 ~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.++.++.|+++.++..+ |...+..+++....+++||||+++..|+.++..|.+. |+++..+||+|+++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~ 71 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVE 71 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHH
Confidence 46789999999998766 9999999999888889999999999999999999988 99999999999875
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.5e-09 Score=78.65 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=57.3
Q ss_pred CCCCccceEEEEEcCCCCcHHHHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 156 SKTPLGLHLEYLECEPDEKPSQLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+.++.|.++.++..+|...+.++++.. ..+++||||+++..|+.++..|... |+++..+||+|++++
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~ 84 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRD 84 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC-------
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHH
Confidence 356789999999999999999999999987 5689999999999999999999988 999999999999865
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-09 Score=78.21 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=58.8
Q ss_pred ccceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 160 LGLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 160 ~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.++.|+++.++..+ |...+.++++..+.+++||||++++.|+.++..|... |+++..+||+|+++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~ 67 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQ 67 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHH
Confidence 46788999998877 9999999999988899999999999999999999988 99999999999865
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.4e-08 Score=78.71 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=60.1
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.|+++.++..+|...+.++++....+++||||+++++++.++..|... |+.+..+||+|++++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGE 66 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHH
Confidence 35788999999999999999999888899999999999999999999988 999999999999854
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.8e-08 Score=75.05 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=59.7
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+.+..+.++..+|...+.++++...++++||||+++++++.++..|... |+++..+||+|++++
T Consensus 4 i~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 4 VTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGE 69 (212)
T ss_dssp CCBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHH
T ss_pred cceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHH
Confidence 345677888899999999999999888899999999999999999999998 999999999998753
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.2e-09 Score=77.65 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=60.0
Q ss_pred ccceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+++.|.++.++. .+|...+.++++....+++||||++++.|+.++..|... |+++..+||+|++++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~ 68 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGK 68 (170)
Confidence 467888888888 889999999998888889999999999999999999988 999999999998765
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=98.57 E-value=7.8e-08 Score=84.23 Aligned_cols=87 Identities=21% Similarity=0.130 Sum_probs=63.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch---------------------------------HHHHHH--
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---------------------------------KADVKK-- 46 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~---------------------------------~~~~~~-- 46 (230)
++|++||++|+.|+.+.+..+.... ++++..+.|.... ......
T Consensus 50 v~i~~pt~~l~~q~~~~~~~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~ 128 (551)
T 3crv_A 50 VLFVVRTHNEFYPIYRDLTKIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLK 128 (551)
T ss_dssp EEEEESSGGGHHHHHHHHTTCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHH
Confidence 7999999999999999999987665 6888877663221 111111
Q ss_pred ---------------HHhcCCcEEEEcChHHHHHHhhCCccc-CCcccEEEEeccccccc
Q 026925 47 ---------------IEEEGANLLIGTPGRLYDIMERMDVLD-FRNLEILVLDEADRLLD 90 (230)
Q Consensus 47 ---------------l~~~~~~Iiv~TP~~l~~~l~~~~~~~-~~~l~~lVvDEad~l~~ 90 (230)
-....+||+|+||..+.+.... ..+. ..+..++|+||||++.+
T Consensus 129 ~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~-~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 129 KDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYR-EFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHH-TTSCCCSTTEEEEETTGGGGGG
T ss_pred HcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHH-HhcCCCcCCeEEEEecccchHH
Confidence 1125789999999999887544 3233 24678999999999987
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.8e-06 Score=73.33 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=52.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch--------H-H-----------------------HHHHH--
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV--------K-A-----------------------DVKKI-- 47 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~--------~-~-----------------------~~~~l-- 47 (230)
++|++||++|+.|+.+.+..+ ++++..+.|.... . + ....+
T Consensus 54 ~~~~~~t~~l~~q~~~~~~~l-----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~ 128 (540)
T 2vl7_A 54 VLIFTRTHSQLDSIYKNAKLL-----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKD 128 (540)
T ss_dssp EEEEESCHHHHHHHHHHHGGG-----TCCEEEC-----------------------------------------------
T ss_pred EEEEcCCHHHHHHHHHHHHhc-----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhh
Confidence 789999999999999888775 3444444432210 0 0 00000
Q ss_pred ------------HhcCCcEEEEcChHHHHHHhhCCcc-------cCCcccEEEEeccccccc
Q 026925 48 ------------EEEGANLLIGTPGRLYDIMERMDVL-------DFRNLEILVLDEADRLLD 90 (230)
Q Consensus 48 ------------~~~~~~Iiv~TP~~l~~~l~~~~~~-------~~~~l~~lVvDEad~l~~ 90 (230)
....+||+|+|+..+.+.... +.+ .+.+...+|+||||++.+
T Consensus 129 ~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~-~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 129 AVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIR-NSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp ----------CTTGGGCSEEEEETHHHHSHHHH-HHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred hcCCChHHHHHHHhhcCCEEEEChHHhcCHHHH-HhhCcccccccCcCCCEEEEEccccHHH
Confidence 024579999999998774433 221 246778999999999943
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=57.83 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=49.3
Q ss_pred cCCCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 169 CEPDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 169 ~~~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
.....|...+.+++... .+.++||||++...++.+...|.... |+++..+||+++++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~ 150 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKK 150 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHH
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHH
Confidence 34567999999999865 67899999999999999999998743 89999999999864
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0027 Score=56.10 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=55.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCc-EEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGAN-LLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~-Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++++||.++|.++...+....... ++..... .+.+. + ....+ ++-.+|+.. .+.. ......+++++
T Consensus 199 vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~~-~~~~~--~-----~~Tih~ll~~~~~~~--~~~~-~~~~~l~~d~l 266 (608)
T 1w36_D 199 IRLAAPTGKAAARLTESLGKALRQL-PLTDEQK-KRIPE--D-----ASTLHRLLGAQPGSQ--RLRH-HAGNPLHLDVL 266 (608)
T ss_dssp EEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCCC-CSCSC--C-----CBTTTSCC--------------CTTSCCSCSEE
T ss_pred EEEEeCChhHHHHHHHHHHHHHhcC-CCCHHHH-hccch--h-----hhhhHhhhccCCCch--HHHh-ccCCCCCCCEE
Confidence 6789999999999988887766554 3221100 00000 0 01111 222233321 1122 22223478999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeec
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt 116 (230)
|||||+ |++ .+.+..+++.++...|++++.-.
T Consensus 267 IIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 267 VVDEAS-MID---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp EECSGG-GCB---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred EEechh-hCC---HHHHHHHHHhCCCCCEEEEEcch
Confidence 999999 554 45677889999988999988644
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.24 Score=36.68 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=52.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+...++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 57 ~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~Gldi~~v~ 124 (191)
T 2p6n_A 57 VLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS--KGLDFPAIQ 124 (191)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH--TTCCCCCCS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh--cCCCcccCC
Confidence 799999999999988888765 578888999876654443 34457899999993 333 467888899
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 125 ~VI~ 128 (191)
T 2p6n_A 125 HVIN 128 (191)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.15 Score=36.54 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=53.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+.++...+... ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 38 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~~~~ 105 (163)
T 2hjv_A 38 CIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIENIS 105 (163)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchhcCC
Confidence 799999999999988888775 678888999876554443 33456789999994 222 567888899
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988643
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.35 Score=34.62 Aligned_cols=71 Identities=10% Similarity=0.188 Sum_probs=52.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+...++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 33 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~~~~ 100 (165)
T 1fuk_A 33 AVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQVS 100 (165)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCCSCS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCcccCC
Confidence 799999999999988888764 568888998877554443 33456789999994 222 567888888
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 101 ~Vi~~~ 106 (165)
T 1fuk_A 101 LVINYD 106 (165)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887643
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.29 Score=36.83 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=52.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|++-+..+...+... ++.+..++|+.+..++... +.++..+|+|+|.- +. ..+++.+++
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~--~Gidi~~v~ 101 (212)
T 3eaq_A 34 AMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----AA--RGLDIPQVD 101 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----TT--CSSSCCCBS
T ss_pred EEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----hh--cCCCCccCc
Confidence 799999999999988888765 5788889998776655443 34567899999952 32 568888899
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8873
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.37 Score=35.38 Aligned_cols=69 Identities=10% Similarity=0.173 Sum_probs=44.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~---~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-+..+...++.. ++.+..++|+.+..+. ...+.+++.+|+|+|. .+. ..+++.+++
T Consensus 49 ~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gldi~~~~ 116 (185)
T 2jgn_A 49 TLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDISNVK 116 (185)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCCSBS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh--cCCCcccCC
Confidence 799999999999988888764 5778888887654433 3344457889999995 222 456778888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.48 Score=34.23 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=53.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+...+... ++.+..++|+.+..+... .+.++..+|+|+|.. +. ..+++.+++
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~~~~ 101 (172)
T 1t5i_A 34 VVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIERVN 101 (172)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGGGCS
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh--cCcchhhCC
Confidence 799999999999988888765 578888898877654443 334577899999963 22 567888899
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 102 ~Vi~~d 107 (172)
T 1t5i_A 102 IAFNYD 107 (172)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988533
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.37 Score=34.89 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=52.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..+...+... ++.+..++|+.+..+... .+.++..+|+|+|.. +. ..+++..++
T Consensus 37 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~--~Gid~~~~~ 104 (175)
T 2rb4_A 37 AIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA--RGIDVKQVT 104 (175)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC--TTTCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----hh--cCCCcccCC
Confidence 699999999999988888764 678888999877655443 334567899999953 22 567888899
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=92.24 E-value=3.2 Score=36.93 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=58.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..+...+... ++++..++|+.+..+.... +..+..+|+|||-- +. .++++.+++
T Consensus 448 vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l~--~GlDip~v~ 515 (661)
T 2d7d_A 448 VLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----LR--EGLDIPEVS 515 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----CS--TTCCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----hh--CCcccCCCC
Confidence 789999999999888888765 6778888888766555444 44577999999862 22 678899999
Q ss_pred EEEEeccccc
Q 026925 79 ILVLDEADRL 88 (230)
Q Consensus 79 ~lVvDEad~l 88 (230)
++|+-++|..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999999865
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=3.8 Score=33.08 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=56.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-|..+++.++.. +..+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 246 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~~~ 313 (395)
T 3pey_A 246 SIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIPTVS 313 (395)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcccCC
Confidence 689999999999988888765 567888888877554443 33456789999996 232 578899999
Q ss_pred EEEEecccc
Q 026925 79 ILVLDEADR 87 (230)
Q Consensus 79 ~lVvDEad~ 87 (230)
++|.-+...
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 998766554
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.83 Score=38.25 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=53.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..+.+.+.+. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~--rGlDi~~v~ 370 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS--RGLDIKNIK 370 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT--SSCCCTTCC
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh--CCCCcccCC
Confidence 689999999999988888764 678888999877654444 33456789999997 222 578899999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=91.95 E-value=0.83 Score=39.47 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=57.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..++..+++.... ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip~v~ 412 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFPNVH 412 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCTTCC
T ss_pred EEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh--cCCCcccCC
Confidence 689999999999999999887543 678888999877654443 34457899999996 332 568889999
Q ss_pred EEEEecc
Q 026925 79 ILVLDEA 85 (230)
Q Consensus 79 ~lVvDEa 85 (230)
++|.-..
T Consensus 413 ~VI~~~~ 419 (563)
T 3i5x_A 413 EVLQIGV 419 (563)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9886543
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.91 Score=37.33 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=53.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+++.+.+. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidip~v~ 346 (417)
T 2i4i_A 279 TLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDISNVK 346 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH--TTSCCCCEE
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cCCCcccCC
Confidence 689999999999988888764 678888999877654443 33457889999995 333 568888899
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.78 Score=36.59 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=52.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|++-+..+...+... ++.+..++|+.+..++.. .+.++..+|+|+|.- +. ..+++.+++
T Consensus 31 ~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a~--~Gidi~~v~ 98 (300)
T 3i32_A 31 AMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----AA--RGLDIPQVD 98 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----TT--CSTTCCCCS
T ss_pred EEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----hh--cCcccccee
Confidence 799999999998888777654 678889999877655444 334577999999952 22 567888888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=91.60 E-value=1.1 Score=39.14 Aligned_cols=76 Identities=14% Similarity=0.276 Sum_probs=58.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|+.-|..++..+++.... ++.+..++|+.+..+... .+.++..+|||+|. .+. ..+++.+++
T Consensus 291 ~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip~v~ 361 (579)
T 3sqw_A 291 AIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFPNVH 361 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCTTCC
T ss_pred EEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCcccCC
Confidence 689999999999999999887543 678888999877654433 44457899999996 232 568889999
Q ss_pred EEEEeccc
Q 026925 79 ILVLDEAD 86 (230)
Q Consensus 79 ~lVvDEad 86 (230)
++|.-..-
T Consensus 362 ~VI~~~~p 369 (579)
T 3sqw_A 362 EVLQIGVP 369 (579)
T ss_dssp EEEEESCC
T ss_pred EEEEcCCC
Confidence 98865543
|
| >3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.22 Score=32.55 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=32.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|... |+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~----G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQN----GVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT----TCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHC----CCCEEEecccHH
Confidence 4579999999999999999999988 999999988864
|
| >1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.25 Score=31.81 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=32.4
Q ss_pred CeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 188 KKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 188 ~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
+++++||.+-..+...+..|... |+++..+.||+..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~----G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE----GYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH----TCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHc----CCcEEEEcccHHH
Confidence 78999999999999999999998 9998889998753
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=4.3 Score=36.12 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=58.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|..+...+... ++++..++|+.+..+.... +..+..+|+|+|-- +. ..+++.+++
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l~--~GlDip~v~ 509 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----LR--EGLDIPEVS 509 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----CC--TTCCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----hh--cCccCCCCC
Confidence 789999999999888888765 5778888888766555444 44567999999852 22 578889999
Q ss_pred EEEEeccccc
Q 026925 79 ILVLDEADRL 88 (230)
Q Consensus 79 ~lVvDEad~l 88 (230)
++|+=++|..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999888864
|
| >3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.2 Score=33.36 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=36.5
Q ss_pred HHHHHHHhC-CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 177 QLVDLLIKN-KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 177 ~l~~ll~~~-~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.+...+... +.+++++||.+-.++...+..|.+. |+++..+.||+.
T Consensus 44 ~l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~----G~~v~~l~GG~~ 90 (108)
T 3gk5_A 44 ELREKWKILERDKKYAVICAHGNRSAAAVEFLSQL----GLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTT----TCCEEEETTHHH
T ss_pred HHHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHc----CCCEEEEcCcHH
Confidence 334444443 5579999999999999999999988 999999998864
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=90.44 E-value=1.4 Score=35.37 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=52.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+.++++.+++. +..+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~~~~ 308 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS--RGIDVNDLN 308 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH--HHCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCCcccCC
Confidence 689999999999988888775 567888888876554433 34456789999995 222 346778888
Q ss_pred EEEEec
Q 026925 79 ILVLDE 84 (230)
Q Consensus 79 ~lVvDE 84 (230)
++|.-+
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 887533
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=90.26 E-value=1.2 Score=36.48 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=53.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-|..++..+.+. +..+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 269 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~~~ 336 (412)
T 3fht_A 269 AMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQVS 336 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 689999999999988888875 567888888877655443 33456789999996 232 578889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=90.23 E-value=0.58 Score=39.28 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=48.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++||++-|..++..+++. +.++..++|+ ...+....+.++..+|+|+|- .+. ..+++. +..+
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~-----v~e--~GiDip-~~~V 238 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD-----ISE--MGANFK-ADRV 238 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTT-THHHHTTHHHHSCCSEEEECG-----GGG--TSCCCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc-----hHH--cCcccC-CcEE
Confidence 3799999999999988888775 5688888886 344455566678899999996 333 345654 5554
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=90.01 E-value=0.71 Score=43.88 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=59.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+++|++|+++-+..+++.+++. +|+.++..++|+.+..+... .+.++..+|+|+|- .+. ..+++.++
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~---~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e--~GiDip~v 883 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 883 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHH---CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTG--GGSCCTTE
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cce--eeecccCC
Confidence 3789999999999888888776 45778999999877554433 34457899999996 333 56889999
Q ss_pred cEEEEecccc
Q 026925 78 EILVLDEADR 87 (230)
Q Consensus 78 ~~lVvDEad~ 87 (230)
+++|+..+|.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999887765
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=1.3 Score=38.11 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=53.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-+.+++..++.. ++.+..++|+.+..+... .+.++..+|+|+|.. +. ..+++.+++
T Consensus 239 ~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a-----~~--~GiD~p~v~ 306 (523)
T 1oyw_A 239 GIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-----FG--MGINKPNVR 306 (523)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-----SC--TTTCCTTCC
T ss_pred EEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----hh--CCCCccCcc
Confidence 689999999999988888764 678888999877554433 444578999999973 22 568888999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 307 ~VI~ 310 (523)
T 1oyw_A 307 FVVH 310 (523)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
| >3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A | Back alignment and structure |
|---|
Probab=89.94 E-value=0.27 Score=32.48 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=32.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.++++++|.+-.++...+..|.+. |++...+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~----G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN----GIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT----TCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc----CCCEEEecChHH
Confidence 4579999999999999999999988 999888888763
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=89.90 E-value=1.4 Score=36.16 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=52.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+.+.++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~~v~ 346 (410)
T 2j0s_A 279 AVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVPQVS 346 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCTTEE
T ss_pred EEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCcccCC
Confidence 689999999999988888764 567888898877554433 34457889999996 232 568889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=89.42 E-value=1.7 Score=35.47 Aligned_cols=69 Identities=6% Similarity=0.140 Sum_probs=52.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-+..+++.++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 261 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~~~ 328 (400)
T 1s2m_A 261 AIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQAVN 328 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTTEE
T ss_pred EEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 689999999999988888775 567888888877654433 34456789999995 222 568888999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 329 ~Vi~ 332 (400)
T 1s2m_A 329 VVIN 332 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=89.21 E-value=1.5 Score=35.53 Aligned_cols=72 Identities=8% Similarity=0.128 Sum_probs=54.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-+..+++.+... ++.+..++|+.+..+... .+.++..+|+|+|.. +. ..+++.+++
T Consensus 253 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~--~Gidi~~~~ 320 (391)
T 1xti_A 253 VVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIERVN 320 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC-----CS--SCBCCTTEE
T ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh-----hh--cCCCcccCC
Confidence 689999999999988888764 567888888876554433 334567899999952 22 568889999
Q ss_pred EEEEecc
Q 026925 79 ILVLDEA 85 (230)
Q Consensus 79 ~lVvDEa 85 (230)
++|.-+.
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9986544
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=0.44 Score=40.15 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=45.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.++|++||++-|.+++..++.. ++++..++|+ ...+....+.++..+|+|+|.- +. ..+++. ++++
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~v-----~e--~GiDip-v~~V 244 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRK-TFEREYPTIKQKKPDFILATDI-----AE--MGANLC-VERV 244 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSS-SCC--------CCCSEEEESSS-----TT--CCTTCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecch-hHHHHHhhhcCCCceEEEECCh-----hh--eeeccC-ceEE
Confidence 4799999999999988888775 5678888884 3344555665678999999973 33 467777 8887
Q ss_pred E
Q 026925 81 V 81 (230)
Q Consensus 81 V 81 (230)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=1.4 Score=38.58 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=53.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|.+++..+... ++.+..++|+.+..+... .+.++..+|||+|.. +. ..+++.+++
T Consensus 270 ~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-----~~--~GID~p~V~ 337 (591)
T 2v1x_A 270 GIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-----FG--MGIDKPDVR 337 (591)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-----SC--TTCCCSCEE
T ss_pred eEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----hh--cCCCccccc
Confidence 689999999999998888764 678889999877655443 344578899999963 22 568889999
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 338 ~VI~ 341 (591)
T 2v1x_A 338 FVIH 341 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
|
| >3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A | Back alignment and structure |
|---|
Probab=87.91 E-value=0.46 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+++++||.+-..+...+..|... |++ +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~----G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSA----GFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHT----TCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHc----CCcCEEEecCCHH
Confidence 4578999999999999999999988 995 888888864
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=87.61 E-value=1.6 Score=36.80 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=38.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
.+|++||++++..+.+.+.+. +.. .....-|.|-++++ +.. ........+.+|
T Consensus 187 ~lVlTpT~~aa~~l~~kl~~~-----~~~-------------------~~~~~~V~T~dsfL--~~~-~~~~~~~~d~li 239 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRANAS-----GII-------------------VATKDNVRTVDSFL--MNY-GKGARCQFKRLF 239 (446)
T ss_dssp CEEEESCHHHHHHHHHHHTTT-----SCC-------------------CCCTTTEEEHHHHH--HTT-TSSCCCCCSEEE
T ss_pred eEEEeCCHHHHHHHHHHhhhc-----Ccc-------------------ccccceEEEeHHhh--cCC-CCCCCCcCCEEE
Confidence 479999999998877666432 100 00112245655532 222 333334578999
Q ss_pred EeccccccccccHHH
Q 026925 82 LDEADRLLDMGFQKQ 96 (230)
Q Consensus 82 vDEad~l~~~~~~~~ 96 (230)
|||+- |++.+....
T Consensus 240 iDE~s-m~~~~~l~~ 253 (446)
T 3vkw_A 240 IDEGL-MLHTGCVNF 253 (446)
T ss_dssp EETGG-GSCHHHHHH
T ss_pred EeCcc-cCCHHHHHH
Confidence 99998 555554433
|
| >3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A | Back alignment and structure |
|---|
Probab=87.44 E-value=0.38 Score=32.78 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=34.9
Q ss_pred HHHHHHhC-CCCeEEEEcCchhH--HHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 178 LVDLLIKN-KSKKIIIYFMTCAC--VDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 178 l~~ll~~~-~~~~~lIF~~t~~~--~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+...+... +.+++++||.+-.. +...+..|... |+++..+.||+.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~----G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSA----GFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHH----TCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHc----CCeEEEeCCcHH
Confidence 33444433 45789999999777 89999999988 999888888764
|
| >2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.64 Score=30.84 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.+.+++++||.+-..+...+..|... |++...+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~----G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHEL----GYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHT----TCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHC----CCCEEEecCCHH
Confidence 45679999999999999999999988 886588888875
|
| >3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A | Back alignment and structure |
|---|
Probab=86.80 E-value=0.54 Score=33.03 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCeEEEEcCch--hHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 186 KSKKIIIYFMTC--ACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~--~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+.+++++||.+- ..+...+..|... |+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~----G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQL----GFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHT----TCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHC----CCeEEEeCCcHH
Confidence 457899999997 6899999999988 999999988764
|
| >1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A | Back alignment and structure |
|---|
Probab=86.20 E-value=0.54 Score=31.05 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|... |++ +..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~----G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQ----GYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHH----TCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHc----CCceEEEecCCHH
Confidence 5679999999988999999999998 995 888888763
|
| >3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=86.06 E-value=0.55 Score=32.08 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=30.7
Q ss_pred CeEEEEc-CchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 188 KKIIIYF-MTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 188 ~~~lIF~-~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
+++++|| ++-..+...+..|... |+++..+.||+.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~----G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSL----GVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHT----TCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHc----CCceEEEeCcHH
Confidence 7999999 5888888999999988 999999998864
|
| >1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 | Back alignment and structure |
|---|
Probab=85.96 E-value=0.6 Score=32.44 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=32.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.++++|||.+-.++...+..|... |+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~----G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREY----GFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHH----TCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHc----CCcceEEEcCcHH
Confidence 5679999999999999999999988 99 5888988864
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=85.17 E-value=1.3 Score=39.54 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=48.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++-+.+++..++.. ++++..++|+ ...+....+.++..+|||+|- .+. ..+++. ++++
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e--~GIDip-v~~V 477 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE--MGANFG-ASRV 477 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG--TTCCCC-CSEE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh--cceeeC-CcEE
Confidence 4799999999999888887764 5788888884 344444455567899999996 333 456766 7776
Q ss_pred E
Q 026925 81 V 81 (230)
Q Consensus 81 V 81 (230)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=85.01 E-value=0.85 Score=32.02 Aligned_cols=37 Identities=5% Similarity=-0.036 Sum_probs=31.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|... |+ ++..+-||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~----G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEA----GITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHT----TCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHc----CCcceEEEcCChh
Confidence 4578999999988899999999988 99 5999999984
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=84.98 E-value=2.1 Score=38.89 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhh------hCCCceEEEEEcCcchHHHHHHHH--------hcCCcEEEEcChHHHHHHh
Q 026925 2 GMIISPTRELSSQIYHVAQPFIS------TLPDVKSVLLVGGVEVKADVKKIE--------EEGANLLIGTPGRLYDIME 67 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~------~~~~~~v~~~~~~~~~~~~~~~l~--------~~~~~Iiv~TP~~l~~~l~ 67 (230)
+||++|+++-+.++...+++... ...++.+..++|+.+..++...+. ++...|||+|. .+.
T Consensus 306 iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----iae 380 (773)
T 2xau_A 306 ILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----IAE 380 (773)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----HHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----HHH
Confidence 69999999999999888876332 224788999999988776655442 23568999997 333
Q ss_pred hCCcccCCcccEEE
Q 026925 68 RMDVLDFRNLEILV 81 (230)
Q Consensus 68 ~~~~~~~~~l~~lV 81 (230)
..+++.+++++|
T Consensus 381 --~GidIp~v~~VI 392 (773)
T 2xau_A 381 --TSLTIDGIVYVV 392 (773)
T ss_dssp --HTCCCTTEEEEE
T ss_pred --hCcCcCCeEEEE
Confidence 356777888766
|
| >2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=84.76 E-value=0.76 Score=31.76 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+++++||.+-..+...+..|... |++ +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~----G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDM----GLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHH----TCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc----CCCCeEEecCCHH
Confidence 4579999999999999999999988 995 888888763
|
| >1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 | Back alignment and structure |
|---|
Probab=84.76 E-value=0.63 Score=31.89 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=32.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|.+. |++ +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~----G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHA----GFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHH----HCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc----CCCCeEEeCCcHH
Confidence 5579999999999999999999988 885 888888863
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=84.40 E-value=4 Score=33.79 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=49.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEc--------CcchH---HHHHHHHhcCCcEEEEcChHHHHHHhhCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG--------GVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMD 70 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~--------~~~~~---~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~ 70 (230)
+||++++++-+..+.+.++.. ++++..++| +.+.. +....+.++..+|+|+|. .+. .
T Consensus 364 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~--~ 431 (494)
T 1wp9_A 364 IIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGE--E 431 (494)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGG--G
T ss_pred EEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----ccc--c
Confidence 699999999999988888875 567788887 44332 333344457789999994 222 4
Q ss_pred cccCCcccEEEEec
Q 026925 71 VLDFRNLEILVLDE 84 (230)
Q Consensus 71 ~~~~~~l~~lVvDE 84 (230)
++++..++++|.-+
T Consensus 432 Gldl~~~~~Vi~~d 445 (494)
T 1wp9_A 432 GLDVPEVDLVVFYE 445 (494)
T ss_dssp GGGSTTCCEEEESS
T ss_pred CCCchhCCEEEEeC
Confidence 67888888888544
|
| >3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.33 E-value=0.91 Score=31.40 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||.+-.++...+..|.+. |++ +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~----G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSH----GYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT----TCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHc----CCCCeEEeCCcHH
Confidence 4679999999999999999999988 995 888888763
|
| >2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A | Back alignment and structure |
|---|
Probab=84.29 E-value=1 Score=28.14 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMKQ 227 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~~ 227 (230)
.+.++++++|.+-.++...+..|.+. |++ +..+ ||+..
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~----G~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEM----GYTHVENA-GGLKD 77 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHT----TCSSEEEE-EETTT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHc----CCCCEEec-cCHHH
Confidence 35679999999999999999999988 885 6666 77653
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=83.80 E-value=1.5 Score=37.00 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=48.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++||++-|.+++..+++. ++++..++++.. ......+.++..+|+|+|- .+. ..+++.. +++|
T Consensus 191 ~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~--~GiDip~-~~VI 256 (451)
T 2jlq_A 191 TVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE--MGANFRA-GRVI 256 (451)
T ss_dssp EEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG--SSCCCCC-SEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH--hCcCCCC-CEEE
Confidence 799999999999988888764 567777877654 3344455567899999996 333 4677777 6665
|
| >1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A | Back alignment and structure |
|---|
Probab=83.76 E-value=1.2 Score=30.66 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=32.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||.+=.++...+..|.+. |+ ++..+-||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~----G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALN----GFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHH----TCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHc----CCcceEEecCCcc
Confidence 4579999999988899999999988 99 5889999983
|
| >3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A | Back alignment and structure |
|---|
Probab=83.24 E-value=1.1 Score=31.27 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
+.+++++||.+-..+...+..|... |++ +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~----G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSA----GFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHT----TCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHc----CCCCEEEecCHHH
Confidence 4578999999999999999999988 985 888888763
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=83.01 E-value=5 Score=35.80 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=54.8
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHh--cCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEE--EGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~l~~--~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+|+++|+.-+.++...+++. ++.+..++|+.+.. .....+.+ +..+|+|+|- .+. ..+++ ++
T Consensus 324 iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e--~GlDi-~v 390 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG--MGLNL-SI 390 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG--SSCCC-CB
T ss_pred EEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH--CCcCc-Cc
Confidence 67899998888877777763 67888999998766 44445544 6689999997 233 56788 89
Q ss_pred cEEEEeccccc
Q 026925 78 EILVLDEADRL 88 (230)
Q Consensus 78 ~~lVvDEad~l 88 (230)
+++|.-...+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998887654
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=82.73 E-value=15 Score=30.97 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=49.1
Q ss_pred EEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcccE
Q 026925 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (230)
Q Consensus 3 lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~ 79 (230)
+|+..+.+-+..+.+.+... +.++..++|+.+..+... .+.++..+|+|+|+..+ . ..+++.++++
T Consensus 351 ~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~----~--~GiDip~v~~ 419 (510)
T 2oca_A 351 FVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF----S--TGISVKNLHH 419 (510)
T ss_dssp EEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH----H--HSCCCCSEEE
T ss_pred EEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh----h--cccccccCcE
Confidence 45555566555555555543 347888888877554333 44467889999997643 3 3478888999
Q ss_pred EEEeccc
Q 026925 80 LVLDEAD 86 (230)
Q Consensus 80 lVvDEad 86 (230)
+|+...+
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9988877
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=82.07 E-value=0.92 Score=40.05 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=30.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV 38 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~ 38 (230)
++|++||++|+.|+.+.+..+.... ++++..+.|+.
T Consensus 54 vli~t~T~~l~~Qi~~el~~l~~~~-~~~~~~l~gr~ 89 (620)
T 4a15_A 54 VLYLVRTNSQEEQVIKELRSLSSTM-KIRAIPMQGRV 89 (620)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHS-CCCEEECCCHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhhcc-CeEEEEEECCC
Confidence 6899999999999999999998766 68888777643
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=81.85 E-value=2.8 Score=36.99 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=48.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||+++|++-|..++..+++. ++++..++|+ ...+....+.++..+|||+|. .+. ..+++. ++++|
T Consensus 358 ~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~--rGiDi~-v~~VI 423 (618)
T 2whx_A 358 TVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISE--MGANFR-AGRVI 423 (618)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGG--TTCCCC-CSEEE
T ss_pred EEEEECChhHHHHHHHHHHHc-----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHH--cCcccC-ceEEE
Confidence 799999999999988888875 5678888875 333445556568899999997 333 456664 77663
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.49 E-value=2 Score=35.16 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=44.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||++++++-+..+++.+... ++.+..++|+.+..+.... +.++..+|+|+|.- +. ..+++.+++
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~Gidip~v~ 350 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL-----LA--RGIDVQQVS 350 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS-----CC----CCGGGCS
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc-----cc--cCCCccCCC
Confidence 689999999999888877764 5677888888776544443 33456899999973 22 467888888
Q ss_pred EEEE
Q 026925 79 ILVL 82 (230)
Q Consensus 79 ~lVv 82 (230)
++|.
T Consensus 351 ~Vi~ 354 (414)
T 3eiq_A 351 LVIN 354 (414)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8874
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.03 E-value=0.41 Score=34.45 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=48.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||+++|++-+..+...++.. ++.+..++|+.+..+... .+.++..+|+|+|. .+. ..+++.+++
T Consensus 33 ~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~~~ 100 (170)
T 2yjt_D 33 SIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA--RGIDIPDVS 100 (170)
Confidence 689999999999888887765 567777787765443333 33346788999994 222 456677777
Q ss_pred EEEEe
Q 026925 79 ILVLD 83 (230)
Q Consensus 79 ~lVvD 83 (230)
++|.-
T Consensus 101 ~Vi~~ 105 (170)
T 2yjt_D 101 HVFNF 105 (170)
Confidence 77753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 230 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 3e-33 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 6e-24 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 7e-23 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 2e-21 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 4e-20 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 7e-17 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 8e-16 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 4e-15 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 2e-13 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 6e-11 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-09 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 2e-07 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 3e-06 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 9e-06 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 1e-05 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 5e-04 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 0.001 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 117 bits (293), Expect = 3e-33
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+ II + + ++K + GG + +K ++ AN+++GTPG
Sbjct: 73 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK--NANIVVGTPG 130
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
R+ D + R L+ +N++ +LDEAD +L+MGF K + I++ K +R LFSAT
Sbjct: 131 RILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPRE 189
Query: 121 VEELSKAGLRNPVRVEVR 138
+ L+K + + ++ +
Sbjct: 190 ILNLAKKYMGDYSFIKAK 207
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.6 bits (229), Expect = 6e-24
Identities = 33/136 (24%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++ TREL+ QI + F +P+VK + GG+ +K D + +++ ++++GTPGR+
Sbjct: 73 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 132
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ L+ ++++ +LDE D++L+ + ++ + I P ++ +FSAT ++ +
Sbjct: 133 LALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI 191
Query: 122 EELSKAGLRNPVRVEV 137
+ + +++P+ + V
Sbjct: 192 RPVCRKFMQDPMEIFV 207
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.3 bits (223), Expect = 7e-23
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRR 109
A +++GTPGR++D ++R +++ +LDEAD +L GF++QI I + LP +
Sbjct: 126 RDAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 184
Query: 110 TGLFSATQTEAVEELSKAGLRNPVRVEV 137
L SAT V E++ +RNPVR+ V
Sbjct: 185 VVLLSATMPNDVLEVTTKFMRNPVRILV 212
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.4 bits (213), Expect = 2e-21
Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QI V +GG V+A+V+K++ E ++++GTPGR
Sbjct: 83 ALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 141
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
++D++ R L + +++ VLDEAD +L GF+ QI I +L + L SAT V
Sbjct: 142 VFDMLNRRY-LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDV 200
Query: 122 EELSKAGLRNPVRVEVR 138
E++K +R+P+R+ V+
Sbjct: 201 LEVTKKFMRDPIRILVK 217
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.0 bits (204), Expect = 4e-20
Identities = 47/138 (34%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+I++PTREL+ QI +V+ +GG V D++K++ G +++ GTPG
Sbjct: 87 QALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPG 144
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
R++D M R L R +++LVLDEAD +L+ GF++QI + LP + L SAT
Sbjct: 145 RVFD-MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE 203
Query: 121 VEELSKAGLRNPVRVEVR 138
+ E++ + +P+R+ V+
Sbjct: 204 ILEMTNKFMTDPIRILVK 221
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.8 bits (180), Expect = 7e-17
Identities = 40/135 (29%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
M+I PTREL+ Q+ + + K + GG ++ D+ ++++ + I TPG
Sbjct: 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVV-IATPG 131
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
R+ D++++ +++++VLDEAD+LL F + + II LPK R+ L+SAT +
Sbjct: 132 RILDLIKKGV-AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLS 190
Query: 121 VEELSKAGLRNPVRV 135
V++ + L P +
Sbjct: 191 VQKFMNSHLEKPYEI 205
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 71.9 bits (175), Expect = 8e-16
Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 7/139 (5%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTREL+ QI +Q F P ++S ++ GG + + +++++ G +LL+ TPGRL
Sbjct: 102 LILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQM-GCHLLVATPGRL 159
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL----PKLRRTGLFSATQT 118
D +E+ + + +VLDEADR+LDMGF+ QI II R+T +FSAT
Sbjct: 160 VDFIEKN-KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 218
Query: 119 EAVEELSKAGLRNPVRVEV 137
+ +++L+ L N + + V
Sbjct: 219 KEIQKLAADFLYNYIFMTV 237
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.2 bits (168), Expect = 4e-15
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 53 NLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGL 112
++L+GTPGR + V D + + ++DEAD++L F+ I I+S LP ++ L
Sbjct: 121 HILVGTPGR-VLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 179
Query: 113 FSATQTEAVEELSKAGLRNPVRVEV 137
FSAT V+E L P + +
Sbjct: 180 FSATFPLTVKEFMVKHLHKPYEINL 204
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 64.7 bits (156), Expect = 2e-13
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 55 LIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
++ + R LD ILV+DEAD +LDMGF + I +R+PK + +FS
Sbjct: 126 IVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFS 185
Query: 115 ATQTEAVEELSKAGLRNPVRVEV 137
AT E ++ K + NP V V
Sbjct: 186 ATIPEKLKPFLKKYMENPTFVHV 208
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.0 bits (139), Expect = 6e-11
Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 22/138 (15%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEG-----ANLLIG 57
+I PT L Q + + V + L+G + ++ E ++I
Sbjct: 90 YVIFPTSLLVIQAAETIRKYAEKAG-VGTENLIGYYHGRIPKREKENFMQNLRNFKIVIT 148
Query: 58 TPGRLYDIMERMDVLDFRNLEILVLDEADRLLD-----------MGFQKQISYIISRLPK 106
T L + + + + +D+ D +L +GF +
Sbjct: 149 TTQFLSK-----HYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEA 203
Query: 107 LRRTGLFSATQTEAVEEL 124
+ +AT + +
Sbjct: 204 RGCLMVSTATAKKGKKAE 221
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 54.2 bits (129), Expect = 2e-09
Identities = 18/223 (8%), Positives = 55/223 (24%), Gaps = 52/223 (23%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTR +++++ +++ + ++ + +
Sbjct: 42 LILAPTRVVAAEME-------------EALRGLPIRYQTPAIRAEHTGREIVDLMCHATF 88
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
+ + N ++++DEA + +AT + +
Sbjct: 89 TMRLLSP--IRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRD 146
Query: 123 ELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEYLECEPDEKPSQLVDLL 182
++ E E E+
Sbjct: 147 PFPQSNAPIMDE---------------------------------EREIPERSWNSGHEW 173
Query: 183 IKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKM 225
+ + K + + + + L + +I L K
Sbjct: 174 VTDFKGKTVWFVPSIKAGNDIAACLRK----NGKKVIQLSRKT 212
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 47.7 bits (112), Expect = 2e-07
Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 11/138 (7%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++SP L Q + S + + LL P RL
Sbjct: 69 VVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE--QQLEVMTGCRTGQIRLLYIAPERL 126
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISY-----IISRLPKLRRTGLFSATQ 117
++ L N +L +DEA + G + Y + R P +AT
Sbjct: 127 ML-DNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPFMALTATA 184
Query: 118 TEAVEE--LSKAGLRNPV 133
+ + + GL +P+
Sbjct: 185 DDTTRQDIVRLLGLNDPL 202
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 44.4 bits (103), Expect = 3e-06
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
+ + ++ ++V DEA R + I+ R K +A+ E
Sbjct: 112 IENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPE 171
Query: 123 ELSK-AGLRNPVRVEVRAESK 142
++ + +E R+E+
Sbjct: 172 KIMEVINNLGIEHIEYRSENS 192
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.6 bits (99), Expect = 9e-06
Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 11/129 (8%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+ + P R L+ + Y + + K L +G + + ++++ T
Sbjct: 70 KSLYVVPLRALAGEKYESFKKWE------KIGLRIGISTGDYESRDEHLGDCDIIVTTSE 123
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL---RRTGLFSATQ 117
+ ++ + + LV+DE L + +++++ ++ R SAT
Sbjct: 124 KADSLIRNRA-SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA 182
Query: 118 TEAVEELSK 126
E+++
Sbjct: 183 PNV-TEIAE 190
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-05
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYW 203
GL Y++ + +EK +L DLL + +++I+ +
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIAL 43
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 5e-04
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 164 LEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYW 203
+ Y+ E + QL+ + + + K IIY + A V+
Sbjct: 7 IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDT 46
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 36.1 bits (82), Expect = 0.001
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 165 EYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYW 203
Y+E +E+ L LL KNK +++ T
Sbjct: 7 SYVEVNENERFEALCRLL-KNKEFYGLVFCKTKRDTKEL 44
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 230 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.97 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.96 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.96 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.96 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.95 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.95 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.94 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.93 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.87 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.77 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.65 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.63 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.61 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.53 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.31 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.31 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.22 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.17 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.11 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.11 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.1 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.08 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.02 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.99 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 98.99 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.94 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.6 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.59 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 98.44 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.21 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 98.15 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.02 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 96.95 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 96.87 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 96.86 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.77 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 96.74 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 96.69 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 96.59 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 96.4 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 96.34 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 96.31 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.01 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 95.89 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 95.03 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 95.01 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 94.94 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 94.79 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 94.11 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 94.09 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 93.97 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 93.11 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 92.92 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 92.84 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 92.45 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 92.36 | |
| d1yt8a4 | 130 | Thiosulfate sulfurtransferase PA2603 {Pseudomonas | 91.31 | |
| d1qxna_ | 137 | Polysulfide-sulfur transferase (sulfide dehydrogen | 90.41 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 89.51 | |
| d1tq1a_ | 119 | Thiosulfate sulfurtransferase/Senescence-associate | 89.16 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.93 | |
| d1gmxa_ | 108 | Sulfurtransferase GlpE {Escherichia coli [TaxId: 5 | 87.85 | |
| d1yt8a1 | 136 | Thiosulfate sulfurtransferase PA2603 {Pseudomonas | 85.36 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 84.94 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 84.77 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 84.03 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 82.89 | |
| d1urha2 | 120 | 3-mercaptopyruvate sulfurtransferase {Escherichia | 82.67 | |
| d1yt8a2 | 101 | Thiosulfate sulfurtransferase PA2603 {Pseudomonas | 82.24 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 80.7 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 80.22 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 80.19 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.7e-30 Score=198.69 Aligned_cols=135 Identities=34% Similarity=0.601 Sum_probs=126.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||||||.|+++++++++... ++++..+.|+....++...+ +.+++|+|+||+++.+++.. +.+.+++++++
T Consensus 87 ~~lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~g~~~~~~~~~~l-~~~~~Ilv~TPgrl~~~~~~-~~~~~~~l~~l 163 (222)
T d2j0sa1 87 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKL-DYGQHVVAGTPGRVFDMIRR-RSLRTRAIKML 163 (222)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eeEEecchHHHHHHHHHHHHHHhCcc-ceeEEEEeecccchhhHHHh-ccCCeEEeCCCCcHHhcccc-cccccccceee
Confidence 48999999999999999999998876 89999999999888887777 57899999999999999988 88999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEe
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~ 138 (230)
|+||||.|++.+|.+++..|++.+|+.+|+++||||+++++.++++.++.+|..|.+.
T Consensus 164 VlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~ 221 (222)
T d2j0sa1 164 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221 (222)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred eecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999987653
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-28 Score=188.87 Aligned_cols=135 Identities=24% Similarity=0.532 Sum_probs=125.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||||||.|+.+.++.++...+.++...+.|+.....+...+.+.++||+||||+++..+++. +.+.+++++++
T Consensus 71 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~-~~~~l~~l~~l 149 (207)
T d1t6na_ 71 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHF 149 (207)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccC-Cceecccccee
Confidence 47999999999999999999999887678888889999888888888778899999999999999998 88999999999
Q ss_pred EEeccccccc-cccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEE
Q 026925 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVE 136 (230)
Q Consensus 81 VvDEad~l~~-~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~ 136 (230)
|+||||.|++ .+|.+++++|++.+++.+|+++||||++++++.+++.++++|..|.
T Consensus 150 VlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~ 206 (207)
T d1t6na_ 150 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 206 (207)
T ss_dssp EEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred ehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999997 4899999999999999999999999999999999999999998775
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.7e-28 Score=187.59 Aligned_cols=133 Identities=31% Similarity=0.564 Sum_probs=123.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||+|||.|++..+..+.....+.......|+.....+...+ ..+++|+||||+++.+++.. +.+.+++++++
T Consensus 73 ~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~ivv~TPgrl~~~~~~-~~~~~~~l~~l 150 (206)
T d1veca_ 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL-DDTVHVVIATPGRILDLIKK-GVAKVDHVQMI 150 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred ceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHH-HhccCeEEeCCccccccccc-hhccccccceE
Confidence 47999999999999999999998877678888888888877776666 68999999999999999988 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i 135 (230)
|+||||.|++.+|.+++..|++.+++++|+++||||+++++..+++.++++|..|
T Consensus 151 VlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 151 VLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEeccccccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999876
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=2.3e-28 Score=187.28 Aligned_cols=133 Identities=32% Similarity=0.552 Sum_probs=123.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||++||.|++++++.+.... +.++..+.|+.+..++.+.+ .++||+||||+++.+++.. +.+.+++++++
T Consensus 74 ~~lil~pt~~l~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~l--~~~~IlV~TP~~l~~~l~~-~~~~~~~l~~l 149 (208)
T d1hv8a1 74 EAIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKAL--KNANIVVGTPGRILDHINR-GTLNLKNVKYF 149 (208)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHH--HTCSEEEECHHHHHHHHHT-TCSCTTSCCEE
T ss_pred ceEEEeeccccchhhhhhhhhhcccC-CeEEEEeeCCCChHHHHHhc--CCCCEEEEChHHHHHHHHc-CCCCcccCcEE
Confidence 58999999999999999999999776 78999999998888777766 5799999999999999988 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
|+||||+|++.++.+++.+|++.+++++|++++|||+++++..++++|+++|..|.+
T Consensus 150 ViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~ 206 (208)
T d1hv8a1 150 ILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206 (208)
T ss_dssp EEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred EEEChHHhhcCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999988864
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.3e-28 Score=189.64 Aligned_cols=136 Identities=35% Similarity=0.613 Sum_probs=121.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
++||++||+|||.|++..++++.... +.+...+.++....++......++++|+|+||+++.+++.. +...+++++++
T Consensus 82 ~alil~Pt~eL~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~-~~~~~~~l~~l 159 (218)
T d2g9na1 82 QALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMF 159 (218)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTT-TCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHT-TSSCSTTCCEE
T ss_pred cEEEEcccchhhhhHHHHHhhhcccc-ceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhc-CCcccccceEE
Confidence 58999999999999999999999887 77877777766655554444456899999999999999988 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEEe
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~ 138 (230)
|+||||.|++.+|.+.+.+|++.+++++|+++||||+++++..+++.++++|..|.+.
T Consensus 160 VlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 160 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred EeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999988763
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.9e-27 Score=182.49 Aligned_cols=132 Identities=34% Similarity=0.588 Sum_probs=114.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++|++||+|||.|++..+..+.... .+++..+.++....++...+ +++||+|+||+++..++.. +.+.+++++++
T Consensus 80 ~~lil~pt~el~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~IvI~TP~~l~~~~~~-~~~~l~~l~~l 155 (212)
T d1qdea_ 80 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 155 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------C--TTCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred ceEEEcccHHHhhhhhhhhccccccc-ccceeeEeeccchhHHHHHh--cCCcEEEECCCcccccccc-CceecCcceEE
Confidence 58999999999999999999998776 78888888887776666554 5789999999999999988 88999999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVE 136 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~ 136 (230)
|+||||.+++.+|.+++..|++.+++.+|+++||||+++++..+++.++++|..|.
T Consensus 156 VlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~ 211 (212)
T d1qdea_ 156 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 211 (212)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred eehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999998874
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.94 E-value=7e-27 Score=182.30 Aligned_cols=134 Identities=37% Similarity=0.586 Sum_probs=122.7
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
+++||+||+|||.|+++.++.++... ++++..+.|+.....+.+.. ..++||+|+||+++..++.. +.+.+++++++
T Consensus 100 ~alil~pt~el~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~ivV~TP~~l~~~~~~-~~~~l~~v~~l 176 (238)
T d1wrba1 100 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREV-QMGCHLLVATPGRLVDFIEK-NKISLEFCKYI 176 (238)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHH-SSCCSEEEECHHHHHHHHHT-TSBCCTTCCEE
T ss_pred eEEEeccchhhhcchheeeeecccCC-CcEEEEEeccchhhHHHhhc-ccCCceeecCHHHHHhHHcc-Cceecccccee
Confidence 48999999999999999999999887 79999999988877776666 68899999999999999998 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCC----CCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLP----KLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~----~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
|+||||.+++.+|.+++.+|++.+. .++|+++||||++++++.+++.||++|..|.+
T Consensus 177 ViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~v 237 (238)
T d1wrba1 177 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237 (238)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999998764 36799999999999999999999999988875
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.8e-26 Score=173.56 Aligned_cols=134 Identities=31% Similarity=0.567 Sum_probs=125.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+++++|+++++.|....+..+.... ++++..+.|+.....+...+ ..++||+|+||+++.++++. +.+.+.+++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l-~~~~~Ili~TP~~l~~~l~~-~~~~l~~l~~l 147 (206)
T d1s2ma1 71 QALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRL-NETVHILVGTPGRVLDLASR-KVADLSDCSLF 147 (206)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred cceeeccchhhhhhhhhhhhhccccc-CeeEEeecCccchhhHHHHh-cccceEEEECCccccccccc-ceeecccceEE
Confidence 36899999999999999999998776 89999999999888777776 68899999999999999998 88899999999
Q ss_pred EEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
|+||||.|++.+|.+++..|++.+++.+|+++||||+++++..++++|+++|..|.+
T Consensus 148 V~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~ 204 (206)
T d1s2ma1 148 IMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 204 (206)
T ss_dssp EEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESC
T ss_pred EeechhhhhhhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999988764
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.87 E-value=1.9e-22 Score=154.08 Aligned_cols=134 Identities=37% Similarity=0.606 Sum_probs=116.0
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCC---CceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLP---DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
.++++|+++++.|.+..+........ ...+..+.++.+...+.... +.+++|+|+||+++..++.+ +...+++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~TP~~l~~~~~~-~~~~~~~l~ 149 (209)
T d1q0ua_ 72 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL-NVQPHIVIGTPGRINDFIRE-QALDVHTAH 149 (209)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC-SSCCSEEEECHHHHHHHHHT-TCCCGGGCC
T ss_pred ccccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHh-ccCceEEEecCchhhhhhhh-hccccccce
Confidence 57899999999999999888765431 35666666666655544444 57899999999999999988 788899999
Q ss_pred EEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhccCCCeEEEE
Q 026925 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (230)
Q Consensus 79 ~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~ 137 (230)
++|+||||.+++++|.+++..|++.+++++|+++||||+++++..++++++++|..|.+
T Consensus 150 ~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 150 ILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EEEEeecccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999998864
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.77 E-value=3.1e-19 Score=143.19 Aligned_cols=174 Identities=11% Similarity=0.019 Sum_probs=109.4
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEE
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~l 80 (230)
.+||++||++||+|+++.++.+......... .........++++||+.+..... ....+.+++++
T Consensus 40 ~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~-------------~~~~~~~~~i~~~t~~~l~~~~~--~~~~~~~~~~v 104 (305)
T d2bmfa2 40 RTLILAPTRVVAAEMEEALRGLPIRYQTPAI-------------RAEHTGREIVDLMCHATFTMRLL--SPIRVPNYNLI 104 (305)
T ss_dssp CEEEEESSHHHHHHHHHHTTTSCCBCCC---------------------CCCSEEEEEHHHHHHHHT--SSSCCCCCSEE
T ss_pred EEEEEccHHHHHHHHHHHHhcCCcceeeeEE-------------eecccCccccccCCcHHHHHHHh--cCccccceeEE
Confidence 3799999999999998887766433211111 01113567899999998877654 34557899999
Q ss_pred EEeccccccccccHHHHHHHHHhC--CCCCcEEEEeecCchHHHHHHHhccCCCeEEEEeccCcccccccchhccccCCC
Q 026925 81 VLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (230)
Q Consensus 81 VvDEad~l~~~~~~~~~~~i~~~l--~~~~q~i~~SAt~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (230)
|+||+|++.++++.. ..++..+ ....|++++|||.+..... +......
T Consensus 105 ViDE~H~~~~~~~~~--~~~l~~~~~~~~~~~v~~SAT~~~~~~~----~~~~~~~------------------------ 154 (305)
T d2bmfa2 105 IMDEAHFTDPASIAA--RGYISTRVEMGEAAGIFMTATPPGSRDP----FPQSNAP------------------------ 154 (305)
T ss_dssp EEESTTCCSHHHHHH--HHHHHHHHHHTSCEEEEECSSCTTCCCS----SCCCSSC------------------------
T ss_pred EeeeeeecchhhHHH--HHHHHHhhccccceEEEeecCCCcceee----ecccCCc------------------------
Confidence 999999987765321 1222222 2467899999998753211 0000000
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+...........+...+..+ ....++++|||+++++|++++..|.+. |+++..+||++.++
T Consensus 155 ---~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~l~~~~~~~ 215 (305)
T d2bmfa2 155 ---IMDEEREIPERSWNSGHEWV--TDFKGKTVWFVPSIKAGNDIAACLRKN----GKKVIQLSRKTFDS 215 (305)
T ss_dssp ---EEEEECCCCCSCCSSCCHHH--HSSCSCEEEECSCHHHHHHHHHHHHHH----TCCCEECCTTCHHH
T ss_pred ---ceEEEEeccHHHHHHHHHHH--HhhCCCEEEEeccHHHHHHHHHHHHhC----CCCEEEeCCcChHH
Confidence 11111111122222222222 234578999999999999999999998 99999999998653
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.65 E-value=1.1e-15 Score=115.10 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=98.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+++++|+++|+.|+++.++++.... +.++....++.........+ ..++++++||+.+...+.. ..+.+++++++|
T Consensus 55 il~i~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~vI 130 (200)
T d1wp9a1 55 VLMLAPTKPLVLQHAESFRRLFNLP-PEKIVALTGEKSPEERSKAW--ARAKVIVATPQTIENDLLA-GRISLEDVSLIV 130 (200)
T ss_dssp EEEECSSHHHHHHHHHHHHHHBCSC-GGGEEEECSCSCHHHHHHHH--HHCSEEEECHHHHHHHHHT-TSCCTTSCSEEE
T ss_pred EEEEcCchHHHHHHHHHHHHhhccc-ccceeeeecccchhHHHHhh--hcccccccccchhHHHHhh-hhhhccccceEE
Confidence 7899999999999999999997654 67888777776665554444 4468999999999998887 778889999999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHhcc-CCCeEEEEecc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL-RNPVRVEVRAE 140 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~~-~~~~~i~~~~~ 140 (230)
+||||++........+...........+++++|||.+.....+....- .+...+.+..+
T Consensus 131 iDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~SATp~~~~~~~~~~~~~l~~~~i~~~~~ 190 (200)
T d1wp9a1 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSE 190 (200)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCT
T ss_pred EEehhhhhcchhHHHHHHHHHhcCCCCcEEEEEecCCCcHHHHHHHHhcCCceEEEeCCC
Confidence 999999876553333333333445678999999998655444433221 13345555444
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.63 E-value=5.8e-16 Score=116.94 Aligned_cols=122 Identities=17% Similarity=0.245 Sum_probs=92.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|+++||++|+.|+.+.++++... ..++....++...... ...+++++++||..+..++.+ ....+.+++++|
T Consensus 71 vl~l~P~~~L~~q~~~~~~~~~~~--~~~v~~~~~~~~~~~~----~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~ii 143 (202)
T d2p6ra3 71 SLYVVPLRALAGEKYESFKKWEKI--GLRIGISTGDYESRDE----HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLV 143 (202)
T ss_dssp EEEEESSHHHHHHHHHHHTTTTTT--TCCEEEECSSCBCCSS----CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEE
T ss_pred ceeecccHHHHHHHHHHHHHHhhc--cccceeeccCcccccc----cccccceeeeccHHHHHHHhc-cchhhhhhhhcc
Confidence 799999999999999999988754 3566666665543221 135689999999999999887 667789999999
Q ss_pred EeccccccccccHHHHHHHH---HhCCCCCcEEEEeecCchHHHHHHHhccCCC
Q 026925 82 LDEADRLLDMGFQKQISYII---SRLPKLRRTGLFSATQTEAVEELSKAGLRNP 132 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~---~~l~~~~q~i~~SAt~~~~~~~~~~~~~~~~ 132 (230)
+||+|.+.+.++...+..++ +..+++.|++++|||+++ .+.+. .|+..+
T Consensus 144 ~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl~n-~~~~~-~~l~~~ 195 (202)
T d2p6ra3 144 VDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDAD 195 (202)
T ss_dssp ETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCE
T ss_pred ccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCCCCc-HHHHH-HHcCCC
Confidence 99999998876555544443 344678899999999976 46665 455443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.61 E-value=6.2e-17 Score=125.39 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=79.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCce----EEEEEcCcchHHHHHHHH-hcCCcEEEEcChHHHHHHhhCCcccCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVK----SVLLVGGVEVKADVKKIE-EEGANLLIGTPGRLYDIMERMDVLDFR 75 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~----v~~~~~~~~~~~~~~~l~-~~~~~Iiv~TP~~l~~~l~~~~~~~~~ 75 (230)
.++|++||++|+.|++++++++...+ +++ .....++.........+. ...++|+|+||+++.+.+ ..++
T Consensus 88 rvliv~Pt~~La~Q~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~-----~~~~ 161 (237)
T d1gkub1 88 RCYVIFPTSLLVIQAAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY-----RELG 161 (237)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCS-----TTSC
T ss_pred eEEEEeccHHHHHHHHHHHHHHHHHc-CCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhh-----hhcC
Confidence 37999999999999999999998765 332 334444444443333332 356899999999875533 3467
Q ss_pred cccEEEEeccccccccccHH-HHHHHH----------HhCCCCCcEEEEeecCchHHHH
Q 026925 76 NLEILVLDEADRLLDMGFQK-QISYII----------SRLPKLRRTGLFSATQTEAVEE 123 (230)
Q Consensus 76 ~l~~lVvDEad~l~~~~~~~-~~~~i~----------~~l~~~~q~i~~SAt~~~~~~~ 123 (230)
+++++|+||+|.+++.+..- ....++ ...+...|++++|||+++..+.
T Consensus 162 ~~~~vVvDE~d~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~ 220 (237)
T d1gkub1 162 HFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKA 220 (237)
T ss_dssp CCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTH
T ss_pred CCCEEEEEChhhhhhcccchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHH
Confidence 89999999999998765321 111111 1123467899999999865444
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=3.5e-15 Score=112.86 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=86.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc---hHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE---VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~---~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+++++|+++|++|..+.++.+.. ......+... ..........+..+|+++||+.+...... ......+++
T Consensus 68 ~~~v~P~~~L~~q~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~-~~~~~~~v~ 141 (206)
T d1oywa2 68 TVVVSPLISLMKDQVDQLQANGV-----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPV 141 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTC-----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEE
T ss_pred eEEeccchhhhhhHHHHHHhhcc-----cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhc-ccchhheee
Confidence 68999999999999999987742 2233322222 22222233357799999999987655444 456678899
Q ss_pred EEEEecccccccccc--HH---HHHHHHHhCCCCCcEEEEeecCchHHHH-HHHh-ccCCCe
Q 026925 79 ILVLDEADRLLDMGF--QK---QISYIISRLPKLRRTGLFSATQTEAVEE-LSKA-GLRNPV 133 (230)
Q Consensus 79 ~lVvDEad~l~~~~~--~~---~~~~i~~~l~~~~q~i~~SAt~~~~~~~-~~~~-~~~~~~ 133 (230)
++|+||||.+.++++ .. .+..+.+.+ ++.|++++|||+++++++ +.+. .+.+|+
T Consensus 142 ~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred eeeeeeeeeeeccccchHHHHHHHHHHHHhC-CCCceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 999999999988763 22 223344555 468999999999998876 3333 478885
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=8.4e-12 Score=96.84 Aligned_cols=114 Identities=23% Similarity=0.352 Sum_probs=83.9
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
+|++++||..||.|.+..++++...+ ++++..++|+.+..+... .+.++.++|+|||-.-+ . ..+.++++
T Consensus 134 q~~~m~Pt~~La~Qh~~~~~~~f~~~-~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~----~--~~~~f~~L 206 (264)
T d1gm5a3 134 QTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI----Q--EDVHFKNL 206 (264)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHH----H--HCCCCSCC
T ss_pred ceeEEeehHhhhHHHHHHHHHhhhhc-cccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHh----c--CCCCcccc
Confidence 68999999999999999999998877 789999999877654433 44567899999999643 2 24567899
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
+++||||-|++ |+.. +.-+.+-.++..++++|||..++...+..
T Consensus 207 glviiDEqH~f---gv~Q--r~~l~~~~~~~~~l~~SATPiprtl~~~~ 250 (264)
T d1gm5a3 207 GLVIIDEQHRF---GVKQ--REALMNKGKMVDTLVMSATPIPRSMALAF 250 (264)
T ss_dssp CEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH
T ss_pred ceeeecccccc---chhh--HHHHHHhCcCCCEEEEECCCCHHHHHHHH
Confidence 99999999986 3222 11122223467899999998775544443
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.2e-11 Score=94.17 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=88.2
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
++++++||..|+.|.+..++++...+ ++++..+++..+..+... .+.++..+|+|||-..+ . ..+.++++
T Consensus 106 qv~~l~Pt~~La~Q~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l----~--~~~~f~~L 178 (233)
T d2eyqa3 106 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----Q--SDVKFKDL 178 (233)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----H--SCCCCSSE
T ss_pred ceEEEccHHHhHHHHHHHHHHHHhhC-CCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhh----c--cCCccccc
Confidence 58999999999999999999998877 789999998877654433 45567899999998643 2 45678999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHHh
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~ 127 (230)
.++||||-|+. |+... ..++....+..++++|||..++...++..
T Consensus 179 gLiIiDEeH~f---g~kQ~--~~l~~~~~~~~~l~~SATPiprtl~~~~~ 223 (233)
T d2eyqa3 179 GLLIVDEEHRF---GVRHK--ERIKAMRANVDILTLTATPIPRTLNMAMS 223 (233)
T ss_dssp EEEEEESGGGS---CHHHH--HHHHHHHTTSEEEEEESSCCCHHHHHHHT
T ss_pred cceeeechhhh---hhHHH--HHHHhhCCCCCEEEEecchhHHHHHHHHH
Confidence 99999999975 43332 22344446788999999988766555543
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.22 E-value=4.3e-12 Score=100.13 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=75.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+|||||+++|+.|+.+.+.++.... ...+....+|....... ....+++++|++++... ....+++++++|
T Consensus 160 ~Liivp~~~Lv~Q~~~~f~~~~~~~-~~~~~~~~~g~~~~~~~----~~~~~i~i~t~qs~~~~----~~~~~~~f~~VI 230 (282)
T d1rifa_ 160 ILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDDKY----KNDAPVVVGTWQTVVKQ----PKEWFSQFGMMM 230 (282)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTCSSTTCC----CTTCSEEEECHHHHTTS----CGGGGGGEEEEE
T ss_pred EEEEEcCchhHHHHHHHHHHhhccc-cccceeecceecccccc----cccceEEEEeeehhhhh----cccccCCCCEEE
Confidence 6999999999999999999886432 44556666665432211 24578999999875443 333567899999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
+||||++. .+.+..++..+.+....+++|||+++
T Consensus 231 vDEaH~~~----a~~~~~il~~~~~~~~rlGlTaT~~~ 264 (282)
T d1rifa_ 231 NDECHLAT----GKSISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp EETGGGCC----HHHHHHHTTTCTTCCEEEEECSSCCT
T ss_pred EECCCCCC----chhHHHHHHhccCCCeEEEEEeecCC
Confidence 99999874 34556777777555556899999854
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.17 E-value=1.7e-11 Score=89.53 Aligned_cols=69 Identities=25% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCCccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 157 KTPLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 157 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.++++|+++.+++.+|...|.++++..+..++||||+|+++|+.++..|... |+++..+||+|+++|
T Consensus 2 ~tl~~i~q~yi~v~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~----g~~~~~~h~~~~~~~ 70 (171)
T d1s2ma2 2 LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQE 70 (171)
T ss_dssp CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHH
T ss_pred CCccceEEEEEEcCHHHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcc----cccccccccccchhh
Confidence 367889999999999999999999999999999999999999999999999998 999999999998754
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=3.4e-11 Score=87.61 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=60.9
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.++|+|+.+.+.+|...|.+++.....+++||||++++.++.++..|.+. |+++..+||+|+++|
T Consensus 1 ~l~q~~v~~~~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~ 65 (168)
T d1t5ia_ 1 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEE 65 (168)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred CcEEEEEEeChHHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccc----cccccccccccchhh
Confidence 36899999999999999999999998899999999999999999999988 999999999998754
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.11 E-value=7.7e-11 Score=82.41 Aligned_cols=100 Identities=20% Similarity=0.129 Sum_probs=64.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|++++++|.++.+... +..+....+.... .....+.+.|...+..... ....+.+++++|
T Consensus 39 vli~~p~~~l~~q~~~~~~~~-----~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~--~~~~~~~~~lvI 103 (140)
T d1yksa1 39 TLVLAPTRVVLSEMKEAFHGL-----DVKFHTQAFSAHG--------SGREVIDAMCHATLTYRML--EPTRVVNWEVII 103 (140)
T ss_dssp EEEEESSHHHHHHHHHHTTTS-----CEEEESSCCCCCC--------CSSCCEEEEEHHHHHHHHT--SSSCCCCCSEEE
T ss_pred eeeeecchhHHHHHHHHhhhh-----hhhhccccccccc--------ccccchhhhhHHHHHHHHh--ccccccceeEEE
Confidence 689999999999987765433 2232221111111 2445678888877766443 456688999999
Q ss_pred EeccccccccccH--HHHHHHHHhCCCCCcEEEEeecCc
Q 026925 82 LDEADRLLDMGFQ--KQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 82 vDEad~l~~~~~~--~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+||||++...++. ..+.. +.. .++.+++++|||.|
T Consensus 104 iDEaH~~~~~~~~~~~~~~~-~~~-~~~~~~l~lTATPp 140 (140)
T d1yksa1 104 MDEAHFLDPASIAARGWAAH-RAR-ANESATILMTATPP 140 (140)
T ss_dssp ETTTTCCSHHHHHHHHHHHH-HHH-TTSCEEEEECSSCT
T ss_pred EccccccChhhHHHHHHHHH-Hhh-CCCCCEEEEEcCCC
Confidence 9999988554322 22222 222 35789999999976
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.10 E-value=2.5e-10 Score=79.87 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=66.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
++|++|+++|++|+.+.+.+.... ......++... .....+.++|++..... ....+++++++|
T Consensus 36 vli~~P~~~l~~q~~~~~~~~~~~----~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~----~~~~~~~~~~vI 99 (136)
T d1a1va1 36 VLVLNPSVAATLGFGAYMSKAHGV----DPNIRTGVRTI--------TTGSPITYSTYGKFLAD----GGCSGGAYDIII 99 (136)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHSC----CCEEECSSCEE--------CCCCSEEEEEHHHHHHT----TGGGGCCCSEEE
T ss_pred EEEEcChHHHHHHHHHHHHHHhhc----ccccccccccc--------ccccceEEEeeeeeccc----cchhhhcCCEEE
Confidence 799999999999999999887643 22333343322 23456888888775433 334678999999
Q ss_pred EeccccccccccHHHHHHHHHhCC--CCCcEEEEeec
Q 026925 82 LDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSAT 116 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~--~~~q~i~~SAt 116 (230)
+||+|++-... ...+..+++.+. ...+++++|||
T Consensus 100 iDE~H~~~~~~-~~~~~~~l~~~~~~~~~~~l~~TAT 135 (136)
T d1a1va1 100 CDECHSTDATS-ILGIGTVLDQAETAGARLVVLATAT 135 (136)
T ss_dssp EETTTCCSHHH-HHHHHHHHHHTTTTTCSEEEEEESS
T ss_pred EecccccCHHH-HHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 99999864332 233455555553 45678999998
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=6.2e-11 Score=86.18 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=64.0
Q ss_pred CCCCccceEEEEEcCCCC-cHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 156 SKTPLGLHLEYLECEPDE-KPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+.++++|+|+.++..+ |.+.|.++++.....++||||++++.|+.++..|... |+++..+||+++++|
T Consensus 2 ~~tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~ 72 (168)
T d2j0sa2 2 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKE 72 (168)
T ss_dssp GCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHH
T ss_pred CCCCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhc----ccchhhhhhhhhHHH
Confidence 356799999999998765 9999999999988899999999999999999999998 999999999998764
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=1.2e-10 Score=84.05 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=58.1
Q ss_pred ceEEEEEcCC-CCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 162 LHLEYLECEP-DEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 162 i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
|+|+|+.++. +.|.+.|.++++....+++||||+|+..|+.++..|... |+++..+||+|+++|
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~ 65 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQE 65 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhc----CceEEEeccCCchhh
Confidence 5788888865 459999999999999999999999999999999999988 999999999998754
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.99 E-value=8.7e-10 Score=82.68 Aligned_cols=94 Identities=20% Similarity=0.112 Sum_probs=66.7
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||+||+++|+.|+.+.++.+... .+....|+. ....+++++|++.+....+. ...+++++|
T Consensus 113 ~Liv~p~~~L~~q~~~~~~~~~~~----~~~~~~~~~----------~~~~~i~i~t~~~~~~~~~~----~~~~~~lvI 174 (206)
T d2fz4a1 113 TLIVVPTLALAEQWKERLGIFGEE----YVGEFSGRI----------KELKPLTVSTYDSAYVNAEK----LGNRFMLLI 174 (206)
T ss_dssp EEEEESSHHHHHHHHHHHGGGCGG----GEEEESSSC----------BCCCSEEEEEHHHHHHTHHH----HTTTCSEEE
T ss_pred eeEEEcccchHHHHHHHHHhhccc----chhhccccc----------ccccccccceehhhhhhhHh----hCCcCCEEE
Confidence 689999999999999999887532 334444432 24467999999987665443 235688999
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+||||++.+..+ ..++..++ ....+++|||+.
T Consensus 175 iDEaH~~~a~~~----~~i~~~~~-~~~~lgLTATl~ 206 (206)
T d2fz4a1 175 FDEVHHLPAESY----VQIAQMSI-APFRLGLTATFE 206 (206)
T ss_dssp EECSSCCCTTTH----HHHHHTCC-CSEEEEEEESCC
T ss_pred EECCeeCCcHHH----HHHHhccC-CCcEEEEecCCC
Confidence 999999865443 44565554 445688999973
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.94 E-value=3.7e-10 Score=80.95 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=59.0
Q ss_pred ccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 160 LGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 160 ~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+++|+|+.+++.+|.+.|.++++..+ .++||||+|+++|+.++..|++. |+++..+||++++.|
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~~~~-~k~IIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~ 66 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLKNKE-FYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQ 66 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHCSTT-CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHH
T ss_pred CCeEEEEEEeChHHHHHHHHHHHccCC-CCEEEEECchHHHHHHHhhhccc----ccccccccccchhhh
Confidence 578999999999999999999997654 58999999999999999999988 999999999998653
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.60 E-value=6.5e-09 Score=72.61 Aligned_cols=67 Identities=10% Similarity=-0.046 Sum_probs=48.8
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+++.+..+..+...+.......++....+++||||+|++.|++++..|... |+++.++||+|++++
T Consensus 7 ~p~I~~~~~~~~~~~~~~~~~i~l~~~~~~k~IVFc~t~~~ae~la~~L~~~----G~~~~~~H~~~~~~~ 73 (138)
T d1jr6a_ 7 HPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRGLDVSV 73 (138)
T ss_dssp CTTEEEEECCBCSSEECSSCEECHHHHTTSCEEEECSCHHHHHHHHHHHHHH----TCEEEEECTTCCSCC
T ss_pred CCCeEEEEeccCChhHHHHhhChHhhcCCCCEEEEeCcHHHHHHHHHHHhcc----ccchhhhhccchhhh
Confidence 3556766555443222211111144556789999999999999999999988 999999999999875
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=2.3e-08 Score=74.24 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=56.0
Q ss_pred CccceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 159 PLGLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 159 ~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+|+.+ ...+..+|.+.|..+|+.....++||||+|++.|+.++..|... |+.+..+||++++++
T Consensus 4 RpNi~y--~v~~~~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~ 68 (200)
T d1oywa3 4 RPNIRY--MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNV 68 (200)
T ss_dssp CTTEEE--EEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHH
T ss_pred CCCcEE--EEEcCCcHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccC----CceeEEecCCCcHHH
Confidence 345653 33466789999999999988899999999999999999999998 999999999998753
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=98.44 E-value=1e-07 Score=68.74 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 173 EKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 173 ~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...+-++..+.+ ..++++||||+|+++|+.++.+|.+. |+++..+||+|+++|
T Consensus 15 ~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~----Gi~a~~~Hg~~~~~e 69 (174)
T d1c4oa2 15 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFK 69 (174)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHH
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhc----CCceEEEecccchHH
Confidence 334434444432 36789999999999999999999998 999999999999764
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.21 E-value=7.4e-06 Score=64.07 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=68.5
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH--HHHh-----cCCcEEEEcChHHHHHHhhCCcccC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK--KIEE-----EGANLLIGTPGRLYDIMERMDVLDF 74 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~--~l~~-----~~~~Iiv~TP~~l~~~l~~~~~~~~ 74 (230)
+||++|.. |..|+.+++.+++.. ...+....++........ .... ...+++++|.+.+..... .+.-
T Consensus 117 ~LIV~P~s-l~~qW~~Ei~k~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~---~l~~ 190 (298)
T d1z3ix2 117 VIVVSPSS-LVRNWYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHK 190 (298)
T ss_dssp EEEEECHH-HHHHHHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTT
T ss_pred EEEEccch-hhHHHHHHHHhhcCC--ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchh---cccc
Confidence 69999976 788999999998865 345555666544332211 1111 235799999988765443 3444
Q ss_pred CcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 75 ~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
.+.+++|+||+|++-+.+ ... ......+. ....+++|||.-
T Consensus 191 ~~~~~vI~DEaH~ikn~~-s~~-~~a~~~l~-~~~rllLTGTPi 231 (298)
T d1z3ix2 191 GKVGLVICDEGHRLKNSD-NQT-YLALNSMN-AQRRVLISGTPI 231 (298)
T ss_dssp SCCCEEEETTGGGCCTTC-HHH-HHHHHHHC-CSEEEEECSSCS
T ss_pred cceeeeeccccccccccc-chh-hhhhhccc-cceeeeecchHH
Confidence 567899999999986543 111 22233343 445688899963
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=98.15 E-value=8.5e-07 Score=64.46 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=43.2
Q ss_pred CCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 172 DEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 172 ~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
..+++.++..++. ..+.++||||+++++++.++..|.+. |+++..+||+|+++|
T Consensus 14 ~~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~----g~~~~~~hg~~~~~e 69 (181)
T d1t5la2 14 KGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEA----GIKVAYLHSEIKTLE 69 (181)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSCCHHH
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhC----CcceeEecCCccHHH
Confidence 3444444444443 25679999999999999999999988 999999999999864
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.02 E-value=1.2e-06 Score=67.64 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=36.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+++++||||+|++.|++++..|.+. |+++..+||++++++
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~----Gi~a~~~Hgglsq~~ 74 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRGLDVSV 74 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCGGG
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHC----CCCEEEEeCCchHHH
Confidence 4679999999999999999999988 999999999999753
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.95 E-value=9.3e-05 Score=54.26 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 175 PSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 175 ~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
.+.+.+++++ ++++||||+|++.|+.++..|.+.
T Consensus 30 ~~l~~~~i~~--~~~~LVF~~sRk~~~~~A~~L~~~ 63 (201)
T d2p6ra4 30 EELVEECVAE--NGGVLVFESTRRGAEKTAVKLSAI 63 (201)
T ss_dssp HHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 3555666654 568999999999999999998865
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.86 E-value=0.00043 Score=51.47 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=60.2
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||++| ..+..|+.+++.++... ..+....+..... .....+|+++|.+.+...-. +.--..+++|
T Consensus 64 ~LIv~p-~~l~~~W~~e~~~~~~~---~~~~~~~~~~~~~------~~~~~~vvi~~~~~~~~~~~----l~~~~~~~vI 129 (230)
T d1z63a1 64 SLVICP-LSVLKNWEEELSKFAPH---LRFAVFHEDRSKI------KLEDYDIILTTYAVLLRDTR----LKEVEWKYIV 129 (230)
T ss_dssp EEEEEC-STTHHHHHHHHHHHCTT---SCEEECSSSTTSC------CGGGSSEEEEEHHHHTTCHH----HHTCCEEEEE
T ss_pred cceecc-hhhhhHHHHHHHhhccc---ccceeeccccchh------hccCcCEEEeeHHHHHhHHH----HhcccceEEE
Confidence 578888 66778888888888643 3433322221111 02457899999987644222 2223567899
Q ss_pred EeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 82 vDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
+||+|.+....... ......+. ....+++|||.-
T Consensus 130 ~DEah~~k~~~s~~--~~~~~~l~-a~~r~~LTgTPi 163 (230)
T d1z63a1 130 IDEAQNIKNPQTKI--FKAVKELK-SKYRIALTGTPI 163 (230)
T ss_dssp EETGGGGSCTTSHH--HHHHHTSC-EEEEEEECSSCS
T ss_pred EEhhhcccccchhh--hhhhhhhc-cceEEEEecchH
Confidence 99999987654222 22233443 344678899963
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.77 E-value=0.00097 Score=51.61 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=34.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 187 SKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 187 ~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.++++|||++..+++.++..|.+. |.++.++||.+..+|
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~----g~~V~~l~~~~~~~e 74 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFERE 74 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCeEEEEcCcCcHhH
Confidence 468999999999999999999988 999999999998765
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0021 Score=46.88 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=66.8
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~---~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
|+.+|+|.-+-...++..+.+ .+|+.++..++|.-+..+.. ..+.+++.+|+|+|. .+. ..++..+.
T Consensus 33 Qvy~V~p~I~~~e~~~~~l~~---~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIE--vGiDvpnA 102 (211)
T d2eyqa5 33 QVYYLYNDVENIQKAAERLAE---LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 102 (211)
T ss_dssp EEEEECCCSSCHHHHHHHHHH---HCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTG--GGSCCTTE
T ss_pred eEEEEEcCccchhhHHHHHHH---hCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----hhh--hccCCCCC
Confidence 578999977766665555555 46788999999987655443 355568899999998 454 46899999
Q ss_pred cEEEEeccccccccccHHHHHHHHHhCCC
Q 026925 78 EILVLDEADRLLDMGFQKQISYIISRLPK 106 (230)
Q Consensus 78 ~~lVvDEad~l~~~~~~~~~~~i~~~l~~ 106 (230)
.++||..||++ | ...+..+..+..+
T Consensus 103 ~~iiI~~a~rf---G-LaQLhQLRGRVGR 127 (211)
T d2eyqa5 103 NTIIIERADHF---G-LAQLHQLRGRVGR 127 (211)
T ss_dssp EEEEETTTTSS---C-HHHHHHHHTTCCB
T ss_pred cEEEEecchhc---c-ccccccccceeee
Confidence 99999999986 3 3345555555543
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=96.69 E-value=0.029 Score=39.43 Aligned_cols=112 Identities=12% Similarity=0.124 Sum_probs=76.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.|+|+.-|.++...+.+. ++++..++|+.+..+..+ .+.++..+|||+|-- +. ..++..+++
T Consensus 34 ~lvfc~t~~~~~~l~~~L~~~-----Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v-----~~--~GiDip~V~ 101 (174)
T d1c4oa2 34 TLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----LR--EGLDIPEVS 101 (174)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----CC--TTCCCTTEE
T ss_pred EEEEEcchhHHHHHHHHHHhc-----CCceEEEecccchHHHHHHHHHHHCCCeEEEEeeee-----ee--eeccCCCCc
Confidence 699999999999988888874 789999999988665554 445688999999983 33 578999999
Q ss_pred EEEEecccccccc-ccHHHHHHHHHhCCC-CCcEEEEeecCchHHHHHH
Q 026925 79 ILVLDEADRLLDM-GFQKQISYIISRLPK-LRRTGLFSATQTEAVEELS 125 (230)
Q Consensus 79 ~lVvDEad~l~~~-~~~~~~~~i~~~l~~-~~q~i~~SAt~~~~~~~~~ 125 (230)
++|+=.++...-. .....+.++-+..+. ....+++....++.+..+.
T Consensus 102 ~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~~~~~~~~~~i 150 (174)
T d1c4oa2 102 LVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAI 150 (174)
T ss_dssp EEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHH
T ss_pred EEEEeccccccccchhHHHHHHhhhhhhcCCCeeEEeecCCCHHHHHHH
Confidence 9998766653211 223345555444432 3345555555555555443
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.0065 Score=45.73 Aligned_cols=123 Identities=16% Similarity=0.128 Sum_probs=84.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHH-HHHhhCC-----cccCC
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERMD-----VLDFR 75 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~-~~l~~~~-----~~~~~ 75 (230)
+=|++.+--||..=..++..+...+ |+++.....+.+..+....+ .|||+.||...+- ++++.+- ..-.+
T Consensus 124 vhvvTvNdyLA~RDae~m~~iy~~l-Glsvg~~~~~~~~~~r~~~Y---~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r 199 (273)
T d1tf5a3 124 VHVVTVNEYLASRDAEQMGKIFEFL-GLTVGLNLNSMSKDEKREAY---AADITYSTNNELGFDYLRDNMVLYKEQMVQR 199 (273)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTSCHHHHHHHH---HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC
T ss_pred ceEEecCccccchhhhHHhHHHHHc-CCCccccccccCHHHHHHHh---hCCceecchhhhhhhhcchhhhcChhhhccC
Confidence 3477888889988889999999888 99999988887766655555 4899999998863 3454311 12257
Q ss_pred cccEEEEecccccc-ccccHHHH----------HHHHHhCCCCCcEEEEeecCchHHHHHHHhc
Q 026925 76 NLEILVLDEADRLL-DMGFQKQI----------SYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (230)
Q Consensus 76 ~l~~lVvDEad~l~-~~~~~~~~----------~~i~~~l~~~~q~i~~SAt~~~~~~~~~~~~ 128 (230)
.+.+.||||+|.++ |....+.+ ....++++.-.++.+++.|......++.+.|
T Consensus 200 ~~~~aIvDEvDsiliDeartpliisg~~~~~a~it~q~~f~~y~~l~gmtgta~~~~~e~~~iy 263 (273)
T d1tf5a3 200 PLHFAVIDEVDSILIDEARTPLIISGQSMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 263 (273)
T ss_dssp CCCEEEEETHHHHHTTTTTCEEEEEEEEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred CCCEEEEEcchhhhhhccCCceEeccCccchhhhhHHHHHHHHHHHhCCccccHHHHHHHHhcc
Confidence 78999999999986 42211100 0012223334577888888877777777665
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.40 E-value=0.0029 Score=48.44 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=41.4
Q ss_pred CcHHHHHHHHH----hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 173 EKPSQLVDLLI----KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 173 ~k~~~l~~ll~----~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
.|.+.+.++|. ...+.++||||+++..|+.++..|.+. |+++..+||...
T Consensus 143 pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~----~~~~~~~~g~~~ 196 (286)
T d1wp9a2 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQAS 196 (286)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSC
T ss_pred cHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHc----CCceEEeecccc
Confidence 36666666654 467789999999999999999999988 999999988644
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.34 E-value=0.00054 Score=49.82 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 171 PDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 171 ~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
...|++.+.++++.+.+.++||||++...++.+++.|.. ..+||+++++|
T Consensus 77 ~~~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~~---------~~i~g~~~~~~ 126 (200)
T d2fwra1 77 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLI---------PAITHRTSREE 126 (200)
T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTC---------CBCCSSSCSHH
T ss_pred cHHHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhcCc---------ceeeCCCCHHH
Confidence 456889999999999889999999999999999877642 34799998753
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.31 E-value=0.00099 Score=49.97 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=46.3
Q ss_pred CCCcHHHHHHHHHhC--CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 171 PDEKPSQLVDLLIKN--KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 171 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
...|+..+.+++... .++++||||+.....+.+...+.... |.++..+||+++++
T Consensus 67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~---~~~~~~i~G~~~~~ 123 (244)
T d1z5za1 67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKK 123 (244)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHH
T ss_pred hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhc---cceEEEEecccchh
Confidence 345889999988743 67899999999999999999987654 88999999999864
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=96.01 E-value=0.082 Score=37.25 Aligned_cols=93 Identities=12% Similarity=0.174 Sum_probs=68.9
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|.++|++-+..+...+.+. ++++..++|+.+..+... .+.++..+|||+|-- +. ..++..+++
T Consensus 34 ~iif~~~~~~~~~~~~~l~~~-----g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv-----~~--rGiDip~v~ 101 (181)
T d1t5la2 34 TLVTTLTKKMAEDLTDYLKEA-----GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----LR--EGLDIPEVS 101 (181)
T ss_dssp EEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCC-----CS--SSCCCTTEE
T ss_pred EEEEeehhhhhHHHHHHHHhC-----CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhH-----HH--ccCCCCCCC
Confidence 789999999999888887764 789999999988765555 445688999999973 32 579999999
Q ss_pred EEEEecccccc-ccccHHHHHHHHHhCCC
Q 026925 79 ILVLDEADRLL-DMGFQKQISYIISRLPK 106 (230)
Q Consensus 79 ~lVvDEad~l~-~~~~~~~~~~i~~~l~~ 106 (230)
++|.-+++... ...+...+.++-+.-+.
T Consensus 102 ~VI~~d~p~~~~~~s~~~yi~R~GRagR~ 130 (181)
T d1t5la2 102 LVAILDADKEGFLRSERSLIQTIGRAARN 130 (181)
T ss_dssp EEEETTTTSCSGGGSHHHHHHHHGGGTTS
T ss_pred EEEEecCCcccccccHHHHHHHHHhhccc
Confidence 99988887532 12345555665555443
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.89 E-value=0.0035 Score=46.98 Aligned_cols=46 Identities=24% Similarity=0.052 Sum_probs=37.4
Q ss_pred cceEEEEEcCCCCcHHHHHHHHHhCCCCeEEEEcCchhHHHHHHHHhhhh
Q 026925 161 GLHLEYLECEPDEKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVVLPRL 210 (230)
Q Consensus 161 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lIF~~t~~~~~~l~~~L~~~ 210 (230)
|+...+. +++|+..+..+++..+ .++||||+|++.|+.++.+|.+.
T Consensus 3 ~v~d~~~---~~~~~~~l~~~l~~~~-~~~iif~~~~~~~~~l~~~l~~~ 48 (248)
T d1gkub2 3 NVEDVAV---NDESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKNK 48 (248)
T ss_dssp CEEEEEE---SCCCTTTTHHHHTTSC-SCEEEEESSHHHHHHHHHTTTTS
T ss_pred CEEEEec---CchHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHh
Confidence 4444443 5779999999998765 57999999999999999999765
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.03 E-value=0.085 Score=36.35 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=55.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||.|.|+.-+.++.+.+... ++.+..++|+.+..+.... +..+...|+|+|-- + . .++++.++
T Consensus 29 k~iIF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv-----~-~-rGiDi~~v 96 (162)
T d1fuka_ 29 QAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----L-A-RGIDVQQV 96 (162)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----G-T-TTCCCCSC
T ss_pred cEEEEEEEEchHHHHHHHHhhc-----CceEEEeccCCchhhHHHHHHHHhhcccceeecccc-----c-c-ccccCCCc
Confidence 3799999999999988877664 6788889998876655543 34577899999973 2 2 67889999
Q ss_pred cEEEEec
Q 026925 78 EILVLDE 84 (230)
Q Consensus 78 ~~lVvDE 84 (230)
+++|.=+
T Consensus 97 ~~VI~~d 103 (162)
T d1fuka_ 97 SLVINYD 103 (162)
T ss_dssp SEEEESS
T ss_pred eEEEEec
Confidence 9998633
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=95.01 E-value=0.0089 Score=47.07 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=45.7
Q ss_pred CCcHHHHHHHHHh---CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCC
Q 026925 172 DEKPSQLVDLLIK---NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQV 228 (230)
Q Consensus 172 ~~k~~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~ 228 (230)
+.|+..+..+++. ..+.|+|||++.....+.+...|... |++...++|+++.+
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~----g~~~~~l~G~~~~~ 155 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR----RYLYVRLDGTMSIK 155 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH----TCCEEEECSSCCHH
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhh----hccccccccchhHH
Confidence 4588888888763 45789999999999999999999988 99999999999854
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=94.94 E-value=0.0036 Score=44.13 Aligned_cols=53 Identities=8% Similarity=0.083 Sum_probs=43.4
Q ss_pred CCCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCC
Q 026925 170 EPDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMK 226 (230)
Q Consensus 170 ~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~ 226 (230)
...+|+..+..-+.. ..++|+||+|.|.+..+.++..|.+. |++..+++....
T Consensus 15 T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~----gi~h~vLnAk~~ 69 (175)
T d1tf5a4 15 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNH 69 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc----CCCceeehhhhH
Confidence 456788887777753 36689999999999999999999988 898888876543
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.015 Score=42.21 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=38.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
.+.++.+.||..+..+.++..+.+. .+++++..+||.|+++|
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~--~p~~~i~~lHGkm~~~e 71 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHGQMRERE 71 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCSSCCHHH
T ss_pred cCCeEEEEEcCccchhhHHHHHHHh--CCceEEEEEEeccCHHH
Confidence 6789999999999999999999998 68999999999998765
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.11 E-value=0.26 Score=33.39 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=52.5
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||.++|++-|.++...++.. ++.+..+.++.+..+.... +..+...++|+|-. +. ..+++..+
T Consensus 30 k~IIF~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~-----~~--~Gid~~~v 97 (155)
T d1hv8a2 30 YGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----MS--RGIDVNDL 97 (155)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----HH--HHCCCSCC
T ss_pred CEEEEECchHHHHHHHhhhccc-----ccccccccccchhhhhhhhhhhhhcccceeeeehhH-----Hh--hhhhhccC
Confidence 3799999999999888888764 6788888888776655443 34567899999963 22 34778888
Q ss_pred cEEEE
Q 026925 78 EILVL 82 (230)
Q Consensus 78 ~~lVv 82 (230)
+++|.
T Consensus 98 ~~Vi~ 102 (155)
T d1hv8a2 98 NCVIN 102 (155)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88883
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=94.09 E-value=0.15 Score=36.37 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=53.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.++|+.-|..+...++.. ++.+..++|+.+..+... .+..+..+|+|+|-. +. ..+++.+++
T Consensus 33 ~IIF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~-----~~--~GiD~p~v~ 100 (200)
T d1oywa3 33 GIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-----FG--MGINKPNVR 100 (200)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-----SC--TTTCCTTCC
T ss_pred EEEEEeeehhhHHhhhhhccC-----CceeEEecCCCcHHHHHHHHHHHhcccceEEEecch-----hh--hccCCCCCC
Confidence 799999999999888777664 678888999887665444 344578999999984 22 568889999
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 101 ~VI 103 (200)
T d1oywa3 101 FVV 103 (200)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.97 E-value=0.16 Score=35.12 Aligned_cols=70 Identities=6% Similarity=0.082 Sum_probs=54.3
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~---~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
+||.|+|+.-|..+...+... ++.+..++|+.+..+... .+..+..+++|+|.. + . ..+++.+++
T Consensus 35 ~iVF~~~~~~~~~l~~~L~~~-----g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~-----~-~-~Gid~~~v~ 102 (171)
T d1s2ma2 35 AIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL-----L-T-RGIDIQAVN 102 (171)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC-----S-S-SSCCCTTEE
T ss_pred eEEEEeeeehhhHhHHhhhcc-----cccccccccccchhhhhhhhhhcccCccccccchhH-----h-h-hccccceeE
Confidence 799999999999888888765 678888888887655444 334578999999984 2 2 678899999
Q ss_pred EEEEe
Q 026925 79 ILVLD 83 (230)
Q Consensus 79 ~lVvD 83 (230)
++|.=
T Consensus 103 ~VI~~ 107 (171)
T d1s2ma2 103 VVINF 107 (171)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 98843
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.21 Score=34.51 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=53.4
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCccc
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~ 78 (230)
++|.++|++-|..+...++.. ++.+..++|+.+..+.... +..+..+|+|+|-. +. .++++.+++
T Consensus 37 ~iiF~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td~-----~~--rGiDi~~v~ 104 (168)
T d2j0sa2 37 AVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-----WA--RGLDVPQVS 104 (168)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-----GS--SSCCCTTEE
T ss_pred eEEEeeeHHHHHHHHHHhhhc-----ccchhhhhhhhhHHHHHHHHHHHhcCCccEEeccch-----hc--ccccccCcc
Confidence 689999999999988887765 5677888888877655443 34577899999974 22 678999999
Q ss_pred EEE
Q 026925 79 ILV 81 (230)
Q Consensus 79 ~lV 81 (230)
++|
T Consensus 105 ~VI 107 (168)
T d2j0sa2 105 LII 107 (168)
T ss_dssp EEE
T ss_pred eEE
Confidence 987
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.21 Score=34.41 Aligned_cols=72 Identities=8% Similarity=0.132 Sum_probs=54.1
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEEcChHHHHHHhhCCcccCCcc
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l 77 (230)
.+||.|+|+.-+..+...+++. ++.+..++|+.+..+.... +.++..+|+|+|-. +. ..+++.++
T Consensus 29 k~iIF~~~~~~~~~l~~~L~~~-----~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~-----~~--~Gid~~~~ 96 (168)
T d1t5ia_ 29 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIERV 96 (168)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGGGC
T ss_pred eEEEEEeeeecchhhhhhhccc-----cccccccccccchhhhhhhhhhhccccceeeecccc-----cc--chhhcccc
Confidence 3799999999998888777664 6788889998877655543 44577999999964 22 56788888
Q ss_pred cEEEEec
Q 026925 78 EILVLDE 84 (230)
Q Consensus 78 ~~lVvDE 84 (230)
+++|.=+
T Consensus 97 ~~vi~~~ 103 (168)
T d1t5ia_ 97 NIAFNYD 103 (168)
T ss_dssp SEEEESS
T ss_pred hhhhhhh
Confidence 8887544
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.45 E-value=0.034 Score=40.19 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=36.5
Q ss_pred CCCcHHHHHHHHHhC--CCCeEEEEcCchhH--------HHHHHHHhhhhhccCCceEEeccCCCCCCC
Q 026925 171 PDEKPSQLVDLLIKN--KSKKIIIYFMTCAC--------VDYWGVVLPRLAVLKSLSLIPLHGKMKQVG 229 (230)
Q Consensus 171 ~~~k~~~l~~ll~~~--~~~~~lIF~~t~~~--------~~~l~~~L~~~~~~~g~~~~~lh~~~~~~e 229 (230)
+.++.+.+.+.+++. .++++.+.|+..+. +.+.+..|.+.. .+++++..+||+|+++|
T Consensus 11 ~~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~-~p~~~v~~lHG~m~~~e 78 (206)
T d1gm5a4 11 PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV-FPEFKLGLMHGRLSQEE 78 (206)
T ss_dssp CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSC-C---CBCCCCSSSCCSC
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhc-CCCCeEEEEeecccHHH
Confidence 345666677776643 56688888986543 444455554432 46789999999999987
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=92.36 E-value=0.073 Score=35.74 Aligned_cols=63 Identities=11% Similarity=0.286 Sum_probs=47.8
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCCcccEEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~~l~~lV 81 (230)
+||.|+|+.-|.++...+++. ++++..++++.+..+ ..+++.+++|+|- .+. ..++ .+++.+|
T Consensus 38 ~IVFc~t~~~ae~la~~L~~~-----G~~~~~~H~~~~~~~----~~~~~~~vlvaTd-----~~~--~GiD-~~v~~Vi 100 (138)
T d1jr6a_ 38 HLIFCHSKKKCDELAAKLVAL-----GINAVAYYRGLDVSV----IPTNGDVVVVATD-----ALM--TGFT-GDFDSVI 100 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCEEEEECTTCCSCC----CTTSSCEEEEESS-----SSC--SSSC-CCBSEEE
T ss_pred EEEEeCcHHHHHHHHHHHhcc-----ccchhhhhccchhhh----hhhhhcceeehhH-----HHH--hccc-cccceEE
Confidence 699999999999999888775 678888998876432 2367899999997 333 3466 5677764
|
| >d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Thiosulfate sulfurtransferase PA2603 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.31 E-value=0.12 Score=34.05 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=35.1
Q ss_pred hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCCCCC
Q 026925 184 KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGKMKQ 227 (230)
Q Consensus 184 ~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~~~~ 227 (230)
....+++++||.+-.++...+..|.+. |+++..+.||+..
T Consensus 77 ~~~~~~ivl~C~~G~rS~~aa~~L~~~----G~~v~~l~GG~~a 116 (130)
T d1yt8a4 77 SVRGARLVLVDDDGVRANMSASWLAQM----GWQVAVLDGLSEA 116 (130)
T ss_dssp CSBTCEEEEECSSSSHHHHHHHHHHHT----TCEEEEECSCCGG
T ss_pred CCccceEEeecCCCccHHHHHHHHHHc----CCCeEEEcCchHH
Confidence 345679999999999999999999998 9999999999753
|
| >d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Single-domain sulfurtransferase domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) species: Wolinella succinogenes [TaxId: 844]
Probab=90.41 E-value=0.16 Score=33.79 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=33.4
Q ss_pred hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 184 KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 184 ~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
..+.+++++||.+-.++...+..|.+. |+ ++..+.||+.
T Consensus 79 ~~~~~~ivvyC~~G~rs~~aa~~L~~~----G~~nV~~l~GG~~ 118 (137)
T d1qxna_ 79 LDPEKPVVVFCKTAARAALAGKTLREY----GFKTIYNSEGGMD 118 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHH----TCSCEEEESSCHH
T ss_pred cCcccceeeeecccchHHHHHHHHHHc----CCCcEEEecCHHH
Confidence 345678999999999999999999999 99 5888899863
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=89.51 E-value=0.26 Score=37.43 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=37.6
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcCh
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~ 60 (230)
++|++|+..-++++...+++. +.+|..++|.....+.. .+.++..+|||+|.-
T Consensus 39 ~~~F~~s~~~~~~~a~~L~~~-----g~~V~~l~~~~~~~e~~-~~~~~~~~~~~~t~~ 91 (299)
T d1yksa2 39 TAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYP-TIKQKKPDFILATDI 91 (299)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC---------CCCSEEEESSS
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCeEEEEcCcCcHhHHh-hhhcCCcCEEEEech
Confidence 689999999999888888764 56788888887765544 444788999999983
|
| >d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Single-domain sulfurtransferase domain: Thiosulfate sulfurtransferase/Senescence-associated protein species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.16 E-value=0.12 Score=33.50 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=32.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhhhhhccCCc-eEEeccCCCC
Q 026925 186 KSKKIIIYFMTCACVDYWGVVLPRLAVLKSL-SLIPLHGKMK 226 (230)
Q Consensus 186 ~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~-~~~~lh~~~~ 226 (230)
+.+++++||++-.++...+..|.+. |+ ++..+.||+.
T Consensus 71 ~~~~iv~~C~~G~rs~~a~~~L~~~----G~~nv~~l~GG~~ 108 (119)
T d1tq1a_ 71 QSDNIIVGCQSGGRSIKATTDLLHA----GFTGVKDIVGGYS 108 (119)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHH----HCCSEEEEECCHH
T ss_pred CCcEEEEEcCCcCcHHHHHHHHHhc----ccCCeEEecChHH
Confidence 5679999999999999999999998 88 5888999864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.93 E-value=0.58 Score=33.43 Aligned_cols=113 Identities=12% Similarity=0.226 Sum_probs=59.4
Q ss_pred EeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcc--hHHHHH----HHHhcCCcEEEEcChHHHHHHhh---CCcc---
Q 026925 5 ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE--VKADVK----KIEEEGANLLIGTPGRLYDIMER---MDVL--- 72 (230)
Q Consensus 5 l~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~--~~~~~~----~l~~~~~~Iiv~TP~~l~~~l~~---~~~~--- 72 (230)
+.|+-++|-+..+.+-+-.+. ..+...+.|..- +..-.. .+...+..+++.+...+...+.. .+..
T Consensus 14 vg~~N~~a~~~~~~~~~~~~~--~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (213)
T d1l8qa2 14 VGEGNRLAYEVVKEALENLGS--LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEF 91 (213)
T ss_dssp CCTTTHHHHHHHHHHHHTTTT--SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHhCcCC--CCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhH
Confidence 456677765544443322111 223355665432 222221 22235567777777666543321 0111
Q ss_pred --cCCcccEEEEecccccccc-ccHHHHHHHHHhCCCCCcEEEEeecCch
Q 026925 73 --DFRNLEILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTE 119 (230)
Q Consensus 73 --~~~~l~~lVvDEad~l~~~-~~~~~~~~i~~~l~~~~q~i~~SAt~~~ 119 (230)
.+...+++++|++|.+... .....+-.++..+......+++|+..++
T Consensus 92 ~~~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p 141 (213)
T d1l8qa2 92 RNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 141 (213)
T ss_dssp HHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred HHHHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcc
Confidence 1457899999999988754 3455666677666544444444555443
|
| >d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Single-domain sulfurtransferase domain: Sulfurtransferase GlpE species: Escherichia coli [TaxId: 562]
Probab=87.85 E-value=0.37 Score=30.35 Aligned_cols=47 Identities=6% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHHHHh-CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 176 SQLVDLLIK-NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 176 ~~l~~ll~~-~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
..+...+.. .+.+++++||.+-.++...+..|.+. |++ +..+.||+.
T Consensus 46 ~~l~~~~~~~~~~~~ivv~c~~g~rs~~~a~~L~~~----G~~~v~~l~GG~~ 94 (108)
T d1gmxa_ 46 DTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQ----GYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHH----TCSSEEEETTHHH
T ss_pred hhHHHHhhhccccCcccccCCCChHHHHHHHHHHHc----CCCCEEEEcChHH
Confidence 344444444 35679999999999999999999998 984 888888763
|
| >d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Thiosulfate sulfurtransferase PA2603 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.36 E-value=0.5 Score=31.20 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhhhhhccCCc--eEEeccCCC
Q 026925 185 NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSL--SLIPLHGKM 225 (230)
Q Consensus 185 ~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~--~~~~lh~~~ 225 (230)
.+..++++||.+-.++...+..|.+. |+ .+..+.||+
T Consensus 78 ~~~~~iV~~C~~g~rs~~aa~~L~~~----G~~~~V~~L~GG~ 116 (136)
T d1yt8a1 78 DPRTRVIVNCAGRTRSIIGTQSLLNA----GIPNPVAALRNGT 116 (136)
T ss_dssp STTSEEEEECSSSHHHHHHHHHHHHT----TCSSCEEEETTHH
T ss_pred cccceEEEEcCCCCchHHHHHHHHHc----CCCceEEEeCCcH
Confidence 35568999999999999999999988 88 378889886
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.94 E-value=0.082 Score=38.06 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=51.6
Q ss_pred CeEEEeCChhhHH-----HHHHHHHHhhh-hCCCceEEEEEcCcc---hHHHHHHHHhcCCcEEEEcChHHHHHHhhCCc
Q 026925 1 MGMIISPTRELSS-----QIYHVAQPFIS-TLPDVKSVLLVGGVE---VKADVKKIEEEGANLLIGTPGRLYDIMERMDV 71 (230)
Q Consensus 1 ~~lil~Pt~eLa~-----q~~~~~~~l~~-~~~~~~v~~~~~~~~---~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~ 71 (230)
|+.+++|.-+=.. ........+.. .+|+.++..++|.-+ .+.....+.+++.+|+|+|- .+. ..
T Consensus 31 QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTt-----ViE--~G 103 (206)
T d1gm5a4 31 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT-----VIE--VG 103 (206)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-----CCC--SC
T ss_pred CEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEeh-----hhh--cc
Confidence 4556777532211 12234444443 346788888888754 44555566678899999997 343 57
Q ss_pred ccCCcccEEEEeccccc
Q 026925 72 LDFRNLEILVLDEADRL 88 (230)
Q Consensus 72 ~~~~~l~~lVvDEad~l 88 (230)
++..++.++|+..|+.+
T Consensus 104 IDip~a~~iii~~a~~f 120 (206)
T d1gm5a4 104 IDVPRANVMVIENPERF 120 (206)
T ss_dssp SCCTTCCEEEBCSCSSS
T ss_pred ccccCCcEEEEEccCCc
Confidence 89999999999999975
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.77 E-value=0.4 Score=35.09 Aligned_cols=74 Identities=24% Similarity=0.296 Sum_probs=46.1
Q ss_pred eEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEEcChHHHHHHhhCCcccCC-cccEE
Q 026925 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR-NLEIL 80 (230)
Q Consensus 2 ~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~~~~~~~-~l~~l 80 (230)
+||.++|++-|..++..++.. ++... ......+....+.++.++|+|||... ...+. .++++. .++++
T Consensus 28 ~iif~~~~~~~~~l~~~l~~~------~hg~~--~~~~R~~~~~~f~~g~~~vLVaT~a~-~~v~~--rGlDip~~v~~V 96 (248)
T d1gkub2 28 GIIYARTGEEAEEIYESLKNK------FRIGI--VTATKKGDYEKFVEGEIDHLIGTAHY-YGTLV--RGLDLPERIRFA 96 (248)
T ss_dssp EEEEESSHHHHHHHHHTTTTS------SCEEE--CTTSSSHHHHHHHHTSCSEEEEECC---------CCSCCTTTCCEE
T ss_pred EEEEECCHHHHHHHHHHHHHh------ccCCC--CHHHHHHHHHHHHhCCCeEEEEeccc-cchhh--hccCccccccEE
Confidence 689999999998877666532 33221 22223345566667899999999742 22333 467775 49999
Q ss_pred EEeccc
Q 026925 81 VLDEAD 86 (230)
Q Consensus 81 VvDEad 86 (230)
|.=++.
T Consensus 97 I~~d~P 102 (248)
T d1gkub2 97 VFVGCP 102 (248)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 865554
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.03 E-value=0.52 Score=33.68 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=43.5
Q ss_pred EcCCCCcHHHHHHHHHh--CCCCeEEEEcCchhHHHHHHHHhhhhhccCCceEEeccCC
Q 026925 168 ECEPDEKPSQLVDLLIK--NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLSLIPLHGK 224 (230)
Q Consensus 168 ~~~~~~k~~~l~~ll~~--~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~~~~lh~~ 224 (230)
.....+|+..+.+-+.. ..++|+||.+.|.+..+.+...|.+. |++..++.+.
T Consensus 13 y~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~----gi~h~vLNAK 67 (219)
T d1nkta4 13 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR----RIPHNVLNAK 67 (219)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT----TCCCEEECSS
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHh----ccchhccchh
Confidence 34556788887777763 37789999999999999999999998 9988887764
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.89 E-value=1.7 Score=30.51 Aligned_cols=67 Identities=9% Similarity=0.115 Sum_probs=42.6
Q ss_pred CCcEEEEcChH-------HHHHHhh-CCcccCCcccEEEEeccccccccccHHHHHHHHHhCCCCCcEEEEeecCc
Q 026925 51 GANLLIGTPGR-------LYDIMER-MDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (230)
Q Consensus 51 ~~~Iiv~TP~~-------l~~~l~~-~~~~~~~~l~~lVvDEad~l~~~~~~~~~~~i~~~l~~~~q~i~~SAt~~ 118 (230)
.+|++.-.|+. +.++.+. ...-...+.+.+|+||||.|-..+ ...+..++.--|.+..+++.|....
T Consensus 46 h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~a-qNaLLK~LEEPp~~t~fiLit~~~~ 120 (198)
T d2gnoa2 46 ASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNTRRWH 120 (198)
T ss_dssp TTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHhhCcccCCCEEEEEeCccccchhh-hhHHHHHHhCCCCCceeeeccCChh
Confidence 37899988853 2333322 111224677899999999985443 4556666666677777887755543
|
| >d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: 3-mercaptopyruvate sulfurtransferase species: Escherichia coli [TaxId: 562]
Probab=82.67 E-value=1.2 Score=28.14 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=36.5
Q ss_pred HHHHHHHHh---CCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCCC
Q 026925 176 SQLVDLLIK---NKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMKQ 227 (230)
Q Consensus 176 ~~l~~ll~~---~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~~ 227 (230)
+.+...+.. ...+++++||++=.++-..+..|... |++ +..+.|++..
T Consensus 68 ~~~~~~~~~~g~~~~~~ii~yC~sG~~A~~~~~~L~~l----G~~~v~~y~Gs~~e 119 (120)
T d1urha2 68 DELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATL----DVPNVKLYDGAWSE 119 (120)
T ss_dssp HHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHT----TCSSCEEECCSCCC
T ss_pred HHhhhhhhhcccCccCceEEEccchhHHHHHHHHHHHc----CCCCceEcCCChhh
Confidence 344455543 35679999999988899999999877 884 8888898763
|
| >d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Thiosulfate sulfurtransferase PA2603 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.24 E-value=0.77 Score=28.22 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=32.8
Q ss_pred hCCCCeEEEEcCchhHHHHHHHHhhhhhccCCce-EEeccCCCC
Q 026925 184 KNKSKKIIIYFMTCACVDYWGVVLPRLAVLKSLS-LIPLHGKMK 226 (230)
Q Consensus 184 ~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~g~~-~~~lh~~~~ 226 (230)
....++++++|++-..+...+..|.+. |++ +..+.||+.
T Consensus 55 ~~~~~~vv~~~~~g~~s~~~~~~l~~~----G~~nV~~l~GG~~ 94 (101)
T d1yt8a2 55 PRRDTPITVYDDGEGLAPVAAQRLHDL----GYSDVALLDGGLS 94 (101)
T ss_dssp CCTTSCEEEECSSSSHHHHHHHHHHHT----TCSSEEEETTHHH
T ss_pred cccCceeeeccchhhhHHHHHHHHHHc----CCCcEEEeCChHH
Confidence 345678999999999999999999988 984 888888763
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.70 E-value=2.7 Score=29.36 Aligned_cols=75 Identities=8% Similarity=0.085 Sum_probs=46.3
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCC-------------------------ceEEEEEcCcchHHHHH---HHHhcCC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPD-------------------------VKSVLLVGGVEVKADVK---KIEEEGA 52 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~-------------------------~~v~~~~~~~~~~~~~~---~l~~~~~ 52 (230)
.+||.+|||.-|..+...+.+....... -.++..+++.+..+... .+.++..
T Consensus 42 ~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~g~i 121 (201)
T d2p6ra4 42 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 121 (201)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhCCCc
Confidence 4799999998888777777665432211 01556677765443222 3345779
Q ss_pred cEEEEcChHHHHHHhhCCcccCCcccEEEE
Q 026925 53 NLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (230)
Q Consensus 53 ~Iiv~TP~~l~~~l~~~~~~~~~~l~~lVv 82 (230)
+|+|+|... . ..+++.....+|.
T Consensus 122 ~vlvaT~~l-----~--~Gin~p~~~vvi~ 144 (201)
T d2p6ra4 122 KVVVATPTL-----A--AGVNLPARRVIVR 144 (201)
T ss_dssp CEEEECSTT-----T--SSSCCCBSEEEEC
T ss_pred eEEEechHH-----H--hhcCCCCceEEEe
Confidence 999999852 1 3466665555554
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=80.22 E-value=0.9 Score=30.81 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=42.7
Q ss_pred CCcccEEEEeccccccccc--cHHHHHHHHHhCCCCCcEEEEeecCchHHHHHHH
Q 026925 74 FRNLEILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (230)
Q Consensus 74 ~~~l~~lVvDEad~l~~~~--~~~~~~~i~~~l~~~~q~i~~SAt~~~~~~~~~~ 126 (230)
-...+++|+||+-..++.+ -.+++..+++..|....+|+..-..|+++...+.
T Consensus 92 ~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~AD 146 (157)
T d1g5ta_ 92 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 146 (157)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred cCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcc
Confidence 4558899999999988877 4667788888888888999987778887766654
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.19 E-value=5.6 Score=29.07 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=49.0
Q ss_pred CeEEEeCChhhHHHHHHHHHHhhhhCCCceEEEEEcCcch-----------HHHHHHHHhcCCcEEEEcChHHHHHHhhC
Q 026925 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV-----------KADVKKIEEEGANLLIGTPGRLYDIMERM 69 (230)
Q Consensus 1 ~~lil~Pt~eLa~q~~~~~~~l~~~~~~~~v~~~~~~~~~-----------~~~~~~l~~~~~~Iiv~TP~~l~~~l~~~ 69 (230)
.+||++++++-+..+.+.+.+- ++++..+.|.... ......+.++.++|+|+|-. ..
T Consensus 163 k~iiF~~~~~~~~~~~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~~-----~~-- 230 (286)
T d1wp9a2 163 KIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV-----GE-- 230 (286)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGG-----GG--
T ss_pred cEEEEeCcHHhHHHHHHHHHHc-----CCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEccc-----ee--
Confidence 3799999999998888777653 5666666654332 12234455678999999953 22
Q ss_pred CcccCCcccEEEE
Q 026925 70 DVLDFRNLEILVL 82 (230)
Q Consensus 70 ~~~~~~~l~~lVv 82 (230)
.++++.+++++|.
T Consensus 231 ~Gld~~~~~~Vi~ 243 (286)
T d1wp9a2 231 EGLDVPEVDLVVF 243 (286)
T ss_dssp GGGGSTTCCEEEE
T ss_pred ccccCCCCCEEEE
Confidence 5688889999984
|