Citrus Sinensis ID: 026969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHEHHHHccccccHHHHHHHHHHHHHHEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcc
Coil and Loop (DISEMBL)
MAALSLGLGiastaittvrttrrpartkfriscvqwdpegilgsaqtghIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Flexible Loop (DISEMBL)
maalslglgiastaittvrttrrpartkfriscvqwdpegilgsaqtghIARLEFKRRLEKDAEAREAFeqhvreeaerrralrqsrvlpdtAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Low Complexity Region (SEG)
MAALSLGLGIastaittvrttrrpartKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFeqhvreeaerrralrqsrvlPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Disordered region (IsUnstruct)
*****LGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEF***************************************EMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDEN******************
Disordered Region (DISOPRED)
********GIASTAITT*********TKFRISCVQWDPEGILGSAQTGHIA****************************************TAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQ**************LIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDE**************AFME*
Disordered Region (DISEMBL)
MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREA****************QSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQ*************
Disordered Region (DISPRO)
******GLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKS***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIExxxxxxxxxxxxxxxxxxxxxLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
147861738	242	hypothetical protein VITISV_040233 [Viti	0.973	0.925	0.755	2e-93
255537039	238	conserved hypothetical protein [Ricinus	0.986	0.953	0.752	6e-93
225426919	242	PREDICTED: uncharacterized protein LOC10	0.973	0.925	0.751	8e-93
356540394	242	PREDICTED: uncharacterized protein LOC10	0.982	0.933	0.703	5e-88
449506137	239	PREDICTED: uncharacterized LOC101214026	0.991	0.953	0.7	3e-85
449459698	239	PREDICTED: uncharacterized protein LOC10	0.991	0.953	0.691	5e-84
15221583	237	uncharacterized protein [Arabidopsis tha	0.982	0.953	0.673	1e-83
297837145	236	hypothetical protein ARALYDRAFT_475075 [	0.978	0.953	0.673	1e-82
224124972	213	predicted protein [Populus trichocarpa]	0.869	0.938	0.745	2e-81
357481941	251	hypothetical protein MTR_5g011990 [Medic	1.0	0.916	0.658	8e-80

>gi|147861738|emb|CAN83165.1| hypothetical protein VITISV_040233 [Vitis vinifera]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/229 (75%), Positives = 198/229 (86%), Gaps = 5/229 (2%)

Query: 7   GLGIASTAI-----TTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEK 61
            LGI+S AI     T  RT   P R + +ISCV WDPEG+ GS  TGHIARLEFKRRLEK
Sbjct: 3   ALGISSAAIGFNTITIFRTKSAPRRLRTKISCVGWDPEGLFGSPNTGHIARLEFKRRLEK 62

Query: 62  DAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQ 121
           DA AREAF++HV EE ERR+ALRQSRV+PDT EE+IEYFLDTEAQE EFEIAR+R RL++
Sbjct: 63  DAXAREAFQRHVLEEKERRQALRQSRVIPDTPEELIEYFLDTEAQEFEFEIARMRHRLDK 122

Query: 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181
           +FFSHL+ ELGQLRF+VSKT++MEDRLIELEALQKALLEGTEAYD MQADLITA++SLTK
Sbjct: 123 DFFSHLQSELGQLRFSVSKTEEMEDRLIELEALQKALLEGTEAYDKMQADLITAKESLTK 182

Query: 182 ILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
           ILTSKDVKATLLE+VE+N++NRSLL LLDENIA+AQ S+QKQ  AFMEK
Sbjct: 183 ILTSKDVKATLLEMVEKNELNRSLLALLDENIASAQSSEQKQAVAFMEK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537039|ref|XP_002509586.1| conserved hypothetical protein [Ricinus communis] gi|223549485|gb|EEF50973.1| conserved hypothetical protein [Ricinus communis]

 Score =  345 bits (886), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 173/230 (75%), Positives = 201/230 (87%), Gaps = 3/230 (1%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MAAL+LG+   +T+IT    T    R+K RISC+ WDPEG+LG  QTGHIAR EF+RRLE
Sbjct: 1   MAALALGI---ATSITFNIRTLPITRSKPRISCIGWDPEGLLGPPQTGHIARREFQRRLE 57

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           +DAEAREAFEQHVREE ERR+ LR SR +PDT  E++EYFLDTEAQE+EFEIAR+RPRLN
Sbjct: 58  RDAEAREAFEQHVREEKERRQNLRLSRDIPDTPAELVEYFLDTEAQEIEFEIARMRPRLN 117

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
           QEFFSHL+FELGQLRFAVSKT+DMEDRLIELEALQKAL EGTEAYD MQ DLI A++SLT
Sbjct: 118 QEFFSHLRFELGQLRFAVSKTEDMEDRLIELEALQKALQEGTEAYDEMQTDLIKAKESLT 177

Query: 181 KILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
           K+LTSKDVKATLLE+VE++++NRSLL LLDENIA+AQ+S+QK  AAFMEK
Sbjct: 178 KVLTSKDVKATLLEMVEKSELNRSLLALLDENIASAQQSNQKDAAAFMEK 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426919|ref|XP_002264554.1| PREDICTED: uncharacterized protein LOC100245386 [Vitis vinifera] gi|296085090|emb|CBI28505.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (885), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 172/229 (75%), Positives = 198/229 (86%), Gaps = 5/229 (2%)

Query: 7   GLGIASTAI-----TTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEK 61
            LGI+S AI     T  RT   P R + +ISCV WDPEG+ GS  TGHIARLEFKRRLEK
Sbjct: 3   ALGISSAAIGFNTITIFRTKSAPRRLRTKISCVGWDPEGLFGSPNTGHIARLEFKRRLEK 62

Query: 62  DAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQ 121
           DA+AREAF++HV EE ERR+ALRQSRV+PDT EE+IEYFLDTEAQE EFEIAR+R RL++
Sbjct: 63  DADAREAFQRHVLEEKERRQALRQSRVIPDTPEELIEYFLDTEAQEFEFEIARMRHRLDK 122

Query: 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181
           +FFSHL+ E GQLRF+VSKT++MEDRLIELEALQKALLEGTEAYD MQADLITA++SLTK
Sbjct: 123 DFFSHLQSERGQLRFSVSKTEEMEDRLIELEALQKALLEGTEAYDKMQADLITAKESLTK 182

Query: 182 ILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
           ILTSKDVKATLLE+VE+N++NRSLL LLDENIA+AQ S+QKQ  AFMEK
Sbjct: 183 ILTSKDVKATLLEMVEKNELNRSLLALLDENIASAQSSEQKQAVAFMEK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540394|ref|XP_003538674.1| PREDICTED: uncharacterized protein LOC100775621 [Glycine max]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 161/229 (70%), Positives = 193/229 (84%), Gaps = 3/229 (1%)

Query: 5   SLGLGIASTAITTVRTTRRPARTKF---RISCVQWDPEGILGSAQTGHIARLEFKRRLEK 61
           +L  GIA+T ++     RR +  K+   RI CV WDPEG+LG  QTGH+AR EFKRRLE+
Sbjct: 3   TLSFGIATTCLSAAADYRRRSNWKWSRPRIVCVGWDPEGVLGPPQTGHLARFEFKRRLER 62

Query: 62  DAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQ 121
           DA+AREAF++ VREE ERR++LRQSR LPDT +++IEYFLDTEAQE+EFEIAR+RPRLN+
Sbjct: 63  DADAREAFQRQVREEKERRQSLRQSRPLPDTPQDLIEYFLDTEAQEIEFEIARMRPRLNE 122

Query: 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181
           EFF+ LKFELGQLRFAV+KTQ MEDR IELEAL+KA+LEG EAYD MQ +L+ AR SLTK
Sbjct: 123 EFFAQLKFELGQLRFAVNKTQLMEDRQIELEALEKAILEGLEAYDKMQGELVKARASLTK 182

Query: 182 ILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
           ILTSKD KATLLE+VE+N+INRSLL LLDENIA+AQK +QKQ A +MEK
Sbjct: 183 ILTSKDAKATLLEMVEKNEINRSLLALLDENIASAQKGNQKQAAEYMEK 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506137|ref|XP_004162663.1| PREDICTED: uncharacterized LOC101214026 [Cucumis sativus]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 187/230 (81%), Gaps = 2/230 (0%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MAALS G     T I    T+ R  R    I+CV WDPEG+ G  QTGHIAR EFKRRLE
Sbjct: 1   MAALSFGF--TPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLE 58

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           KDAEAREAFE+HVREE ERR+ LR+SRV+P     +IEYFLDTEAQ++EFEIARLRPRLN
Sbjct: 59  KDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLN 118

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
           +EFFS +K ELG+LRFAV+KT+ MEDR+IELEALQKAL EG EAYD MQ +L+ AR+ LT
Sbjct: 119 EEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYDKMQRELVKAREGLT 178

Query: 181 KILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
           KILTSKDVKATLL+++E+N++NRSLL LLDENIANAQ  +QKQ AAFMEK
Sbjct: 179 KILTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEK 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459698|ref|XP_004147583.1| PREDICTED: uncharacterized protein LOC101214026 [Cucumis sativus]

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 159/230 (69%), Positives = 185/230 (80%), Gaps = 2/230 (0%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MAALS G     T I    T+ R  R    I+CV WDPEG+ G  QTGHIAR EFKRRLE
Sbjct: 1   MAALSFGF--TPTTIHLPSTSIRSRRIPQTITCVGWDPEGLFGKPQTGHIARNEFKRRLE 58

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           KDAEAREAFE+HVREE ERR+ LR+SRV+P     +IEYFLDTEAQ++EFEIARLRPRLN
Sbjct: 59  KDAEAREAFERHVREEKERRKTLRESRVIPGNVTGLIEYFLDTEAQDIEFEIARLRPRLN 118

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
           +EFFS +K ELG+LRFAV+KT+ MEDR+IELEALQKAL EG EAY  MQ +L+  R+ LT
Sbjct: 119 EEFFSRVKLELGELRFAVNKTEAMEDRVIELEALQKALEEGIEAYSKMQRELVKVREGLT 178

Query: 181 KILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
           KILTSKDVKATLL+++E+N++NRSLL LLDENIANAQ  +QKQ AAFMEK
Sbjct: 179 KILTSKDVKATLLDMLERNELNRSLLALLDENIANAQMGNQKQAAAFMEK 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221583|ref|NP_176466.1| uncharacterized protein [Arabidopsis thaliana] gi|18252921|gb|AAL62387.1| unknown protein [Arabidopsis thaliana] gi|23197936|gb|AAN15495.1| unknown protein [Arabidopsis thaliana] gi|332195882|gb|AEE34003.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/230 (67%), Positives = 191/230 (83%), Gaps = 4/230 (1%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MA LS G+  A+T   TVRT  R    + +I+C +WDP+G+LG AQTGHIARLEFKRRLE
Sbjct: 1   MATLSFGIAAAAT---TVRTIPRFNSRRSKITC-EWDPKGVLGPAQTGHIARLEFKRRLE 56

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           +D+EAREAF++ +REE ERR+ALRQSRV+PDTA E+IEYFLDTEAQE+E+EIARLR RLN
Sbjct: 57  RDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTEAQEIEYEIARLRGRLN 116

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
            EFF+ ++ E+GQ+RFAV+KT D+EDRLIELE LQKAL EG EAYD MQ +L+TA  SLT
Sbjct: 117 DEFFAQIRLEIGQIRFAVTKTADIEDRLIELETLQKALEEGIEAYDKMQNELMTATNSLT 176

Query: 181 KILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
           K+LTS D+K TLL++VE+N+INRSLL LLDENIANA K +QK+   +MEK
Sbjct: 177 KLLTSTDIKTTLLDMVEKNQINRSLLALLDENIANAYKGNQKEAGDYMEK 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837145|ref|XP_002886454.1| hypothetical protein ARALYDRAFT_475075 [Arabidopsis lyrata subsp. lyrata] gi|297332295|gb|EFH62713.1| hypothetical protein ARALYDRAFT_475075 [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/230 (67%), Positives = 190/230 (82%), Gaps = 5/230 (2%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
           MA LS G+  A    TTVRT  R    + +ISC +WDP+G+LG  QTGHIARLEFKRRLE
Sbjct: 1   MATLSFGIAAA----TTVRTIPRFNTRRSKISC-EWDPKGVLGPPQTGHIARLEFKRRLE 55

Query: 61  KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
           +D+EAREAF++ +REE ERR+ALRQSRV+PDTA E+IEYFLDTEAQE+E+EIARLR RLN
Sbjct: 56  RDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTEAQEIEYEIARLRGRLN 115

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
            EFF+ ++ E+GQ+RFAV+KT ++EDRLIELE+LQKAL EG EAYD MQ +L+TA  SLT
Sbjct: 116 DEFFAQIRLEIGQIRFAVTKTAEIEDRLIELESLQKALEEGIEAYDKMQNELMTATNSLT 175

Query: 181 KILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
           KILTS D+K TLL++VE+N+INRSLL LLDENIANA K +QK+   +MEK
Sbjct: 176 KILTSTDIKTTLLDMVEKNEINRSLLALLDENIANAYKGNQKEAGDYMEK 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124972|ref|XP_002329859.1| predicted protein [Populus trichocarpa] gi|222871096|gb|EEF08227.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 173/204 (84%), Gaps = 4/204 (1%)

Query: 18  VRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEA 77
            RT  +P R    ISCV+WDPEG+ G  QTGH+AR E  RRLEKDAE REA E   REE 
Sbjct: 9   TRTNHKPCR----ISCVKWDPEGLYGPPQTGHLARREINRRLEKDAEFREALEMQAREEK 64

Query: 78  ERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFA 137
           +RR ALRQSRV+PDT+E++IEYFLDTEAQE+EFEIARLR RLN EFFS L+FELGQLRFA
Sbjct: 65  QRRHALRQSRVIPDTSEKLIEYFLDTEAQEIEFEIARLRQRLNHEFFSQLQFELGQLRFA 124

Query: 138 VSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVE 197
           VSKT++MEDRLIELEALQKAL EGTEAYD MQ +L+ A+KSLTKILTSKDVKATLLE+VE
Sbjct: 125 VSKTEEMEDRLIELEALQKALKEGTEAYDKMQGELVKAKKSLTKILTSKDVKATLLEMVE 184

Query: 198 QNKINRSLLTLLDENIANAQKSDQ 221
           QN++NRSLLTLLDENIA+A +  Q
Sbjct: 185 QNELNRSLLTLLDENIASANQGKQ 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481941|ref|XP_003611256.1| hypothetical protein MTR_5g011990 [Medicago truncatula] gi|355512591|gb|AES94214.1| hypothetical protein MTR_5g011990 [Medicago truncatula]

 Score =  302 bits (773), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 158/240 (65%), Positives = 189/240 (78%), Gaps = 10/240 (4%)

Query: 1   MAALSLGLGIAS-TAITTVRT-TRRPARTKFRISCV--------QWDPEGILGSAQTGHI 50
           MA L+ GL   +  A +  RT T+  +R K  I C+         WDPEG+LG   TGH+
Sbjct: 1   MATLNFGLATTNLNATSGFRTRTKSWSRGKSTIVCIGGGPIGPLDWDPEGVLGRPNTGHL 60

Query: 51  ARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEF 110
           ARLEFKRRLEKD++AREAFE+ VREE ERRRALR SR +PDT +++IEY LDTEAQE+EF
Sbjct: 61  ARLEFKRRLEKDSDAREAFERQVREEKERRRALRDSRDVPDTPQDLIEYLLDTEAQEIEF 120

Query: 111 EIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQA 170
           EIAR+RPRLN EF   LK ELGQLRFAV+KTQ  EDRL ELEAL+KA+ EGT+AYD MQA
Sbjct: 121 EIARMRPRLNDEFILALKSELGQLRFAVNKTQLTEDRLTELEALEKAIQEGTDAYDKMQA 180

Query: 171 DLITARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
            LI A+++LTKILTSKDVKATLLELVE+N+INRSLLTLLDENI++A  ++QKQ A +MEK
Sbjct: 181 QLIKAKENLTKILTSKDVKATLLELVERNEINRSLLTLLDENISSAHGANQKQAAEYMEK 240

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2026247	237	AT1G62780 "AT1G62780" [Arabido	0.982	0.953	0.586	5.2e-65

TAIR|locus:2026247 AT1G62780 "AT1G62780" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 135/230 (58%), Positives = 165/230 (71%)

Query:     1 MAALSLGLGIXXXXXXXXXXXXXXXXXKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
             MA LS G+                   + +I+C +WDP+G+LG AQTGHIARLEFKRRLE
Sbjct:     1 MATLSFGIA---AAATTVRTIPRFNSRRSKITC-EWDPKGVLGPAQTGHIARLEFKRRLE 56

Query:    61 KDAEAREAFXXXXXXXXXXXXXXXXXXXXPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
             +D+EAREAF                    PDTA E+IEYFLDTEAQE+E+EIARLR RLN
Sbjct:    57 RDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTEAQEIEYEIARLRGRLN 116

Query:   121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
              EFF+ ++ E+GQ+RFAV+KT D+EDRLIELE LQKAL EG EAYD MQ +L+TA  SLT
Sbjct:   117 DEFFAQIRLEIGQIRFAVTKTADIEDRLIELETLQKALEEGIEAYDKMQNELMTATNSLT 176

Query:   181 KILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
             K+LTS D+K TLL++VE+N+INRSLL LLDENIANA K +QK+   +MEK
Sbjct:   177 KLLTSTDIKTTLLDMVEKNQINRSLLALLDENIANAYKGNQKEAGDYMEK 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.353    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      230       193   0.00098  110 3  10 22  0.46    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  190 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.52u 0.15s 27.67t   Elapsed:  00:00:01
  Total cpu time:  27.52u 0.15s 27.67t   Elapsed:  00:00:01
  Start:  Thu May  9 16:28:09 2013   End:  Thu May  9 16:28:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007279001 SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (242 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 41/272 (15%), Positives = 77/272 (28%), Gaps = 91/272 (33%)

Query: 29  FRISCVQWDPEGILGSAQTGHIARLEFK------RRLEKDAEAREAFEQHVREEAERRRA 82
           F     Q+  + IL   +   +   + K      + +    E                  
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS----GT 64

Query: 83  LRQSRVLPDTAEEMIEYFL-DTEAQELEFEIARLR-----PRLNQEFFSHLKFEL---GQ 133
           LR    L    EEM++ F+ +      +F ++ ++     P +    +   +  L    Q
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 134 L--RFAVSKTQDMEDRLIELEALQKALLE-------------GT-------EAYDN---- 167
           +  ++ VS       RL     L++ALLE             G+       +   +    
Sbjct: 125 VFAKYNVS-------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 168 -----------------------MQADLIT---------ARKSLTKILTSKDVKATLLEL 195
                                  M   L+          +  S    L    ++A L  L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 196 VEQNKINRSLLTLLDENIANAQKSDQKQVAAF 227
           ++       LL +L  N+      + K   AF
Sbjct: 238 LKSKPYENCLL-VLL-NV-----QNAKAWNAF 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 25/104 (24%)

Query: 126 HLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTS 185
           H+ FE G+ ++   + +D+      L   + A ++  +  D         +     IL+ 
Sbjct: 6   HMDFETGEHQY---QYKDI------LSVFEDAFVDNFDCKD--------VQDMPKSILSK 48

Query: 186 KDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFME 229
           +++   ++     +   R   TLL +         ++ V  F+E
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQ--------EEMVQKFVE 84

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 65/224 (29%)

Query: 33  CVQW------DPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQH-----VREEAERRR 81
            + W      D   ++         +L     +EK  +             ++ + E   
Sbjct: 393 SLIWFDVIKSDVMVVV--------NKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEY 443

Query: 82  ALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHL-----KFELGQ--- 133
           AL +S         +++++   +  + +     + P L+Q F+SH+       E  +   
Sbjct: 444 ALHRS---------IVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 134 --------LRF----------AVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLIT- 174
                    RF          A + +  + + L +L+  +  + +    Y+ +   ++  
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 175 ARKSLTKILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQK 218
             K    ++ SK     LL +    +       + +E     Q+
Sbjct: 552 LPKIEENLICSKY--TDLLRIALMAEDE----AIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 42/293 (14%), Positives = 81/293 (27%), Gaps = 109/293 (37%)

Query: 1   MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQW-------DPEGIL----------- 42
           +     G G    A+    + +   +  F+I    W        PE +L           
Sbjct: 158 VL----GSGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQID 210

Query: 43  --GSAQTGHIARL--------EFKRRLEK---------------DAEAREAFEQHVR--- 74
              ++++ H + +           RRL K               +A+A  AF    +   
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 75  -----EEAERRRALRQSRVL---------PDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
                +  +   A   + +          PD  + ++  +LD   Q+L  E+    PR  
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR- 329

Query: 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQAD-LITARKSL 179
                        L       +D                   + + ++  D L T  +S 
Sbjct: 330 -------------LSIIAESIRDGLATW--------------DNWKHVNCDKLTTIIESS 362

Query: 180 TKILTSKDVKATLLELV---EQNKINRSLLTLL--------DENIAN--AQKS 219
             +L   + +     L        I   LL+L+           + N   + S
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00