Citrus Sinensis ID: 026975

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEEEEEEEHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFleapvksegvrflqlapgeffFTTLKVSGYcglllgspVILYEIIAFVLPGLTRAERRFLgpivlgssVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAavltpstdpvTQMLLAAPLLGLYFGGAWMVKLTGR
Flexible Loop (DISEMBL)
MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Low Complexity Region (SEG)
MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIqlllgqvglvTSDQMLSIWRYvvvgaviaaavLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Disordered region (IsUnstruct)
***FDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKL***
Disordered Region (DISOPRED)
MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Disordered Region (DISEMBL)
MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Disordered Region (DISPRO)
MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q9SJV5	340	Sec-independent protein t	yes	no	1.0	0.676	0.926	1e-114
Q94G17	353	Sec-independent protein t	N/A	no	1.0	0.651	0.860	1e-101
Q9AVE6	359	Sec-independent protein t	yes	no	1.0	0.640	0.904	1e-100
C4IZX0	356	Sec-independent protein t	N/A	no	1.0	0.646	0.878	9e-95
P54086	254	Sec-independent protein t	N/A	no	0.991	0.897	0.617	2e-78
Q6B8S9	238	Uncharacterized tatC-like	N/A	no	0.991	0.957	0.482	5e-65
O78493	290	Uncharacterized tatC-like	yes	no	0.969	0.768	0.506	5e-61
P51264	254	Uncharacterized tatC-like	N/A	no	0.947	0.858	0.509	3e-58
Q9TLS5	239	Uncharacterized tatC-like	N/A	no	0.978	0.941	0.471	2e-56
P49538	263	Uncharacterized tatC-like	N/A	no	0.934	0.817	0.497	3e-55

>sp|Q9SJV5|TATC_ARATH Sec-independent protein translocase protein TATC, chloroplastic OS=Arabidopsis thaliana GN=TATC PE=1 SV=2

 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/230 (92%), Positives = 226/230 (98%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           M+IFDHLEELR+RIFVSVLAVGAAILGCFA+SK+LI+FLEAPVK++GVRFLQLAPGEFFF
Sbjct: 111 MTIFDHLEELRERIFVSVLAVGAAILGCFAFSKDLIVFLEAPVKTQGVRFLQLAPGEFFF 170

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIV GSS+LFYAG+AFSYWVL
Sbjct: 171 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVFGSSLLFYAGLAFSYWVL 230

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVG+V+ DQM
Sbjct: 231 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVVSGDQM 290

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAAV+TPSTDPVTQMLLA PLLGLY GGAWMVKLTGR
Sbjct: 291 LSIWRYVVVGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 340

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94G17|TATC_PEA Sec-independent protein translocase protein TATC, chloroplastic OS=Pisum sativum GN=TATC PE=1 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/230 (86%), Positives = 218/230 (94%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSIFDHLEELR+RIF+SVL VG +ILGCFA+SK+L+  LEAPVKSEGVRFLQLAPGEFFF
Sbjct: 124 MSIFDHLEELRERIFISVLGVGGSILGCFAFSKDLVKILEAPVKSEGVRFLQLAPGEFFF 183

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSP+ILYEIIAF++PGLT+ ER+FLGPIVLGSSVLFYAGI FSY VL
Sbjct: 184 TTLKVSGYCGLLLGSPIILYEIIAFIIPGLTKEERKFLGPIVLGSSVLFYAGITFSYLVL 243

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
            PAALNFFVNYAEG VESLWSIDQYFEFVLVLMFSTGLSFQVP+IQLLLGQ+GLV+ D+M
Sbjct: 244 VPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVSGDKM 303

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LS+WRYVVVGAV+AAAV+TPSTDP+TQ+LLAAPLLGLY GGAWMVKL GR
Sbjct: 304 LSVWRYVVVGAVVAAAVVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR 353

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Pisum sativum (taxid: 3888)

>sp|Q9AVE6|TATC_ORYSJ Sec-independent protein translocase protein TATC, chloroplastic OS=Oryza sativa subsp. japonica GN=TATC PE=2 SV=1

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/230 (90%), Positives = 217/230 (94%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSIFDHLEELR RIFVSVLAVGAAILGCFAYSK+LI  LEAPV  +GVRFLQL+PGEFFF
Sbjct: 130 MSIFDHLEELRDRIFVSVLAVGAAILGCFAYSKDLIRILEAPVSVQGVRFLQLSPGEFFF 189

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTR ER+FLGPIVLGSSVLFY GI FSY VL
Sbjct: 190 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRDERKFLGPIVLGSSVLFYLGIFFSYTVL 249

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
            PAALNFFVNYA+G VESLWSIDQYFEFVLVL+FSTGLSFQVPVIQLLLGQVGLV+SDQM
Sbjct: 250 APAALNFFVNYADGAVESLWSIDQYFEFVLVLLFSTGLSFQVPVIQLLLGQVGLVSSDQM 309

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAAVLTPSTDP+TQMLLA PLLGLY GGAWMVKLTGR
Sbjct: 310 LSIWRYVVVGAVVAAAVLTPSTDPLTQMLLAGPLLGLYLGGAWMVKLTGR 359

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|C4IZX0|TATC_MAIZE Sec-independent protein translocase protein TATC, chloroplastic OS=Zea mays GN=TATC PE=2 SV=1

 Score =  346 bits (887), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 202/230 (87%), Positives = 221/230 (96%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSIFDHLEELR RIF+SVLAVGAAILGCFA+SK+L++FLEAPV ++GVRFLQL+PGEFFF
Sbjct: 127 MSIFDHLEELRDRIFISVLAVGAAILGCFAFSKDLVIFLEAPVTAQGVRFLQLSPGEFFF 186

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSP+ILYEIIAFV+PGLTR ER+FLGPIVLGSSVLFY GI FSY VL
Sbjct: 187 TTLKVSGYCGLLLGSPIILYEIIAFVIPGLTRDERKFLGPIVLGSSVLFYLGIFFSYTVL 246

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           +PAALNFFVNYA+G VESLWSIDQYFEF+LVLMFSTGLSFQVPVIQLLLGQ+GLV+SDQM
Sbjct: 247 SPAALNFFVNYADGAVESLWSIDQYFEFILVLMFSTGLSFQVPVIQLLLGQLGLVSSDQM 306

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAAVLTPSTDP+TQMLLA PLLGLY GGAWMVK+TGR
Sbjct: 307 LSIWRYVVVGAVVAAAVLTPSTDPLTQMLLAGPLLGLYLGGAWMVKITGR 356

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Zea mays (taxid: 4577)

>sp|P54086|TATC_SYNY3 Sec-independent protein translocase protein TatC OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=tatC PE=3 SV=1

 Score =  291 bits (745), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/230 (61%), Positives = 188/230 (81%), Gaps = 2/230 (0%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MS+FDHL+ELR RIF+S+ AV   ++ CF + K L+ +L+ P  +  V+FLQL+PGEFFF
Sbjct: 27  MSLFDHLDELRTRIFLSLGAVLVGVVACFIFVKPLVQWLQVPAGT--VKFLQLSPGEFFF 84

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
            ++KV+GY G+L+ SP ILY+II FVLPGLTR ERR LGP+VLGSSVLF+AG+ F+Y+ L
Sbjct: 85  VSVKVAGYSGILVMSPFILYQIIQFVLPGLTRRERRLLGPVVLGSSVLFFAGLGFAYYAL 144

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
            PAAL FFV+Y   VVE LWSID+YFEFVL+LMFSTGL+FQ+P+IQ++LG +G+V+S+QM
Sbjct: 145 IPAALKFFVSYGADVVEQLWSIDKYFEFVLLLMFSTGLAFQIPIIQVVLGFLGIVSSEQM 204

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           L  WR+V++GA++  A+LTPSTDP+TQ LLA  +LGLYFGG   V+L G+
Sbjct: 205 LKGWRFVILGAMVLGAILTPSTDPLTQSLLAGAVLGLYFGGIGCVRLLGK 254

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q6B8S9|YCF43_GRATL Uncharacterized tatC-like protein ycf43 OS=Gracilaria tenuistipitata var. liui GN=ycf43 PE=3 SV=1

 Score =  247 bits (631), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 168/230 (73%), Gaps = 2/230 (0%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSIF+HLEELRQRIF++ L        CF Y K +   L+ P  + G++FLQLAPGE+ F
Sbjct: 11  MSIFEHLEELRQRIFIAALIFIVITAICFTYMKNISYILQQP--AIGIKFLQLAPGEYLF 68

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           T++KV+ Y G LL SP I+Y+I  F+LPGLT+ E  F+ PI+  S +LF++GI F+Y +L
Sbjct: 69  TSIKVALYSGFLLSSPFIIYQITLFILPGLTKKESNFIVPILFISIILFFSGIVFAYIIL 128

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
            PAAL F +NY   +VE +WS +QYF F+L+L+FSTG++FQ+P+IQ++LG + + +S +M
Sbjct: 129 VPAALKFLINYGNEIVEPIWSFEQYFNFILLLLFSTGIAFQIPIIQVILGILKIFSSSEM 188

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
            + W+Y+V+GA + AA++TPSTDP+TQ++++  +L LY  G  ++K+  +
Sbjct: 189 YAYWKYIVLGATVIAAIITPSTDPITQIIMSIAILALYSSGIIILKILNK 238

Gracilaria tenuistipitata var. liui (taxid: 285951)

>sp|O78493|YCF43_GUITH Uncharacterized tatC-like protein ycf43 OS=Guillardia theta GN=ycf43 PE=3 SV=1

 Score =  234 bits (596), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 166/225 (73%), Gaps = 2/225 (0%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MS+ +HLEE+RQR F S   +   I+ C  + K ++  L+ P  + G++FLQ APGE+FF
Sbjct: 57  MSLAEHLEEIRQRAFWSFSVLTTMIISCIIFVKNIVKTLQEP--AAGIKFLQFAPGEYFF 114

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
            ++KV+ Y G+L+ SP I+Y+I+ FVLPG+T+ ER+ L PI++GS +LF  G+ F Y++L
Sbjct: 115 ASIKVAAYSGILISSPFIVYQILLFVLPGMTKDERKTLLPIIIGSMILFLLGLIFGYYIL 174

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
            PA+LNFF+ Y   VVE  WS +QYFEF+LVL+F T L+FQ+PV+QL+LG + +V+   M
Sbjct: 175 VPASLNFFIKYGSDVVEPFWSFEQYFEFILVLLFGTALAFQLPVLQLVLGFLRIVSGKTM 234

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMV 225
            SIWRYV++ + +  AVLTPS DP+TQ+LL++ +L LYFGGA +V
Sbjct: 235 FSIWRYVILLSTVVGAVLTPSVDPLTQILLSSIILILYFGGASLV 279

Guillardia theta (taxid: 55529)

>sp|P51264|YCF43_PORPU Uncharacterized tatC-like protein ycf43 OS=Porphyra purpurea GN=ycf43 PE=3 SV=1

 Score =  224 bits (572), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/222 (50%), Positives = 168/222 (75%), Gaps = 4/222 (1%)

Query: 1   MSIFDHLEELRQR-IFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFF 59
           MSI +HLEELRQR +FV +  + AA +  F   K ++   +AP  + G++FLQLAPGE+F
Sbjct: 27  MSITEHLEELRQRTVFVFIFFLLAATIS-FTQIKIIVEIFQAP--AIGIKFLQLAPGEYF 83

Query: 60  FTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWV 119
           F+++K++ YCG++  +P  +Y++I ++LPGLT  ER+ + PI++GS VLF  G  F+Y+V
Sbjct: 84  FSSIKIAIYCGIVATTPFGVYQVILYILPGLTNKERKVILPILIGSIVLFIVGGIFAYFV 143

Query: 120 LTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQ 179
           L PAALNF ++Y   +VE LWS +QYF+F+L+L+FSTGL+F++P+IQLLLG  G V++ Q
Sbjct: 144 LAPAALNFLISYGADIVEPLWSFEQYFDFILLLLFSTGLAFEIPIIQLLLGISGTVSASQ 203

Query: 180 MLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGG 221
           ML  WRY+++ + I  AVLTPSTDPVTQ+++++ +L LYF G
Sbjct: 204 MLLAWRYIIIISTIIGAVLTPSTDPVTQIIMSSAVLALYFSG 245

Porphyra purpurea (taxid: 2787)

>sp|Q9TLS5|YCF43_CYACA Uncharacterized tatC-like protein ycf43 OS=Cyanidium caldarium GN=ycf43 PE=3 SV=1

 Score =  218 bits (556), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/227 (47%), Positives = 167/227 (73%), Gaps = 2/227 (0%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSI++HLEELRQR   S++A+  +++ C      LI  ++ P  + G++FLQL+PGE+FF
Sbjct: 12  MSIYEHLEELRQRSIESIVALLISMVVCSLNINILIELIKQP--AIGIKFLQLSPGEYFF 69

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           T++K++ Y G++L SP+I YEII F++PGLT+ ERR L PI++ S  LF AG+ F Y  +
Sbjct: 70  TSIKITLYLGIILSSPIIFYEIIIFIIPGLTKKERRLLIPILIASGCLFVAGLIFGYIYI 129

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TP A+ FF+NY + ++E +WS  +YF+F+++ +FST +SFQ+P+ Q+LLG + ++ S  M
Sbjct: 130 TPIAVRFFINYGKDMIEPIWSFKEYFDFIILSLFSTAISFQIPIFQILLGSLKIINSKMM 189

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKL 227
           LS+WRYVVVG+ I +A++TPSTDP+ Q+ L+  ++ LYF    ++KL
Sbjct: 190 LSVWRYVVVGSTIFSAIITPSTDPLIQLFLSVAVMFLYFSSILVLKL 236

Cyanidium caldarium (taxid: 2771)

>sp|P49538|YCF43_ODOSI Uncharacterized tatC-like protein ycf43 OS=Odontella sinensis GN=ycf43 PE=3 SV=1

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 108/217 (49%), Positives = 157/217 (72%), Gaps = 2/217 (0%)

Query: 5   DHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLK 64
           +H+EEL+QR+F +   +           K L+  LE PV +  V+F QL+PGE+F +T+K
Sbjct: 40  EHIEELKQRLFHTFWIILILTFISLCEVKLLVKILELPVNN--VKFFQLSPGEYFVSTVK 97

Query: 65  VSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAA 124
           +S Y G L GSP  + +II F+LPGLT+ E + + P++L S  LF  G+ FSY+ L PAA
Sbjct: 98  ISFYTGFLFGSPFAIGQIILFLLPGLTKKETKIILPLLLSSLGLFGFGLVFSYYALIPAA 157

Query: 125 LNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIW 184
           LNFF+NY++ V+E LWS DQYFEF+LVL +STGL+FQ+P+IQ+LLG + ++++ QML+ W
Sbjct: 158 LNFFLNYSDEVIEPLWSFDQYFEFILVLFYSTGLAFQIPIIQILLGLLNIISAKQMLAAW 217

Query: 185 RYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGG 221
           RY+++ + I  A+LTPSTDP+TQ+LL+  +L LYF G
Sbjct: 218 RYIILVSTIIGAILTPSTDPLTQLLLSIAILMLYFSG 254

Odontella sinensis (taxid: 2839)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
25312108	327	TATC-like protein [imported] - Arabidops	1.0	0.703	0.926	1e-113
18379153	340	Sec-independent periplasmic protein tran	1.0	0.676	0.926	1e-112
297817696	339	hypothetical protein ARALYDRAFT_484017 [	1.0	0.678	0.921	1e-112
356536260	346	PREDICTED: sec-independent protein trans	1.0	0.664	0.904	1e-109
356575606	344	PREDICTED: sec-independent protein trans	1.0	0.668	0.913	1e-109
255639374	343	unknown [Glycine max]	1.0	0.670	0.9	1e-109
255639931	230	unknown [Glycine max]	1.0	1.0	0.904	1e-108
449493436	347	PREDICTED: sec-independent protein trans	1.0	0.662	0.886	1e-107
449434578	347	PREDICTED: sec-independent protein trans	1.0	0.662	0.886	1e-107
116780922	372	unknown [Picea sitchensis]	0.995	0.615	0.868	1e-103

>gi|25312108|pir||G84420 TATC-like protein [imported] - Arabidopsis thaliana

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/230 (92%), Positives = 226/230 (98%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           M+IFDHLEELR+RIFVSVLAVGAAILGCFA+SK+LI+FLEAPVK++GVRFLQLAPGEFFF
Sbjct: 98  MTIFDHLEELRERIFVSVLAVGAAILGCFAFSKDLIVFLEAPVKTQGVRFLQLAPGEFFF 157

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIV GSS+LFYAG+AFSYWVL
Sbjct: 158 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVFGSSLLFYAGLAFSYWVL 217

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVG+V+ DQM
Sbjct: 218 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVVSGDQM 277

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAAV+TPSTDPVTQMLLA PLLGLY GGAWMVKLTGR
Sbjct: 278 LSIWRYVVVGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class: N/A

Phylum: Streptophyta

>gi|18379153|ref|NP_565252.1| Sec-independent periplasmic protein translocase [Arabidopsis thaliana] gi|75206327|sp|Q9SJV5.2|TATC_ARATH RecName: Full=Sec-independent protein translocase protein TATC, chloroplastic; AltName: Full=Protein ALBINO AND PALE GREEN 2; AltName: Full=Protein TWIN-ARGININE TRANSLOCATION C; AltName: Full=Protein UNFERTILIZED EMBRYO SAC 3; Flags: Precursor gi|4929312|gb|AAD33946.1|AF145045_1 TATC [Arabidopsis thaliana] gi|13430520|gb|AAK25882.1|AF360172_1 putative TATC protein [Arabidopsis thaliana] gi|15004994|dbj|BAB62074.1| cpTatC [Arabidopsis thaliana] gi|15810617|gb|AAL07196.1| putative TATC protein [Arabidopsis thaliana] gi|20197905|gb|AAF18659.2| TATC-like protein [Arabidopsis thaliana] gi|21537010|gb|AAM61351.1| TATC-like protein [Arabidopsis thaliana] gi|330250308|gb|AEC05402.1| Sec-independent periplasmic protein translocase [Arabidopsis thaliana]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/230 (92%), Positives = 226/230 (98%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           M+IFDHLEELR+RIFVSVLAVGAAILGCFA+SK+LI+FLEAPVK++GVRFLQLAPGEFFF
Sbjct: 111 MTIFDHLEELRERIFVSVLAVGAAILGCFAFSKDLIVFLEAPVKTQGVRFLQLAPGEFFF 170

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIV GSS+LFYAG+AFSYWVL
Sbjct: 171 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVFGSSLLFYAGLAFSYWVL 230

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVG+V+ DQM
Sbjct: 231 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVVSGDQM 290

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAAV+TPSTDPVTQMLLA PLLGLY GGAWMVKLTGR
Sbjct: 291 LSIWRYVVVGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817696|ref|XP_002876731.1| hypothetical protein ARALYDRAFT_484017 [Arabidopsis lyrata subsp. lyrata] gi|297322569|gb|EFH52990.1| hypothetical protein ARALYDRAFT_484017 [Arabidopsis lyrata subsp. lyrata]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/230 (92%), Positives = 225/230 (97%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           M+IFDHLEELR+RIFVSVLAVGAAILGCFA+SK+LI+FLEAPVK++GVRFLQLAPGEFFF
Sbjct: 110 MTIFDHLEELRERIFVSVLAVGAAILGCFAFSKDLIVFLEAPVKTQGVRFLQLAPGEFFF 169

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIV GSS+LFYAG+AFSYWVL
Sbjct: 170 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVFGSSLLFYAGLAFSYWVL 229

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVG+V+ DQM
Sbjct: 230 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVVSGDQM 289

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+ AAV+TPSTDPVTQMLLA PLLGLY GGAWMVKLTGR
Sbjct: 290 LSIWRYVVVGAVVVAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536260|ref|XP_003536657.1| PREDICTED: sec-independent protein translocase protein TatC-like [Glycine max]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/230 (90%), Positives = 222/230 (96%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSIFDHLEELRQRIFVSVLAVGA+ILGCFA+SKELIM LEAPVK++GVRFLQLAPGEFFF
Sbjct: 117 MSIFDHLEELRQRIFVSVLAVGASILGCFAFSKELIMILEAPVKTQGVRFLQLAPGEFFF 176

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSPVILYE+IAFVLPGLT++ERRFLGPIVLGSSVLFYAGI FSY VL
Sbjct: 177 TTLKVSGYCGLLLGSPVILYEVIAFVLPGLTKSERRFLGPIVLGSSVLFYAGITFSYLVL 236

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFV YAEG VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQ LLGQ+GLV+ DQM
Sbjct: 237 TPAALNFFVTYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVSGDQM 296

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAA++TPSTDP+TQ+LLAAPLLGLY GGAWMVKLTGR
Sbjct: 297 LSIWRYVVVGAVVAAAIVTPSTDPLTQILLAAPLLGLYLGGAWMVKLTGR 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575606|ref|XP_003555930.1| PREDICTED: sec-independent protein translocase protein TatC-like [Glycine max]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/230 (91%), Positives = 221/230 (96%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSIFDHLEELRQRIFVSVLAVGA+ILGCFA+SKELIM LEAPVKS+GVRFLQLAPGEFFF
Sbjct: 115 MSIFDHLEELRQRIFVSVLAVGASILGCFAFSKELIMILEAPVKSQGVRFLQLAPGEFFF 174

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLG PVILYEIIAFVLPGLT+AERRFLGPIVLGSSVLFYAGI FSY VL
Sbjct: 175 TTLKVSGYCGLLLGIPVILYEIIAFVLPGLTKAERRFLGPIVLGSSVLFYAGITFSYLVL 234

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFV YAEG VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQ LLGQ+GLV+ DQM
Sbjct: 235 TPAALNFFVTYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVSGDQM 294

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAA++TPSTDP+TQ+LLAAPLLGLY GGAWMVKLTGR
Sbjct: 295 LSIWRYVVVGAVVAAAIVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLTGR 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639374|gb|ACU19983.1| unknown [Glycine max]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/230 (90%), Positives = 222/230 (96%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSIFDHLEELRQRIFVSVLAVGA+ILGCFA+SKELIM LEAPVK++GVRFLQLAPGEFFF
Sbjct: 114 MSIFDHLEELRQRIFVSVLAVGASILGCFAFSKELIMILEAPVKTQGVRFLQLAPGEFFF 173

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSG+CGLLLGSPVILYE+IAFVLPGLT++ERRFLGPIVLGSSVLFYAGI FSY VL
Sbjct: 174 TTLKVSGHCGLLLGSPVILYEVIAFVLPGLTKSERRFLGPIVLGSSVLFYAGITFSYLVL 233

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFV YAEG VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQ LLGQ+GLV+ DQM
Sbjct: 234 TPAALNFFVTYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVSGDQM 293

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAA++TPSTDP+TQ+LLAAPLLGLY GGAWMVKLTGR
Sbjct: 294 LSIWRYVVVGAVVAAAIVTPSTDPLTQILLAAPLLGLYLGGAWMVKLTGR 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639931|gb|ACU20258.1| unknown [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/230 (90%), Positives = 221/230 (96%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSIFDHLEELRQRIFVSVLAVGA+ILGCFA+SKELIM LEAPVK++GVRFLQLAPGEFFF
Sbjct: 1   MSIFDHLEELRQRIFVSVLAVGASILGCFAFSKELIMILEAPVKTQGVRFLQLAPGEFFF 60

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSPVILYE+IAFVLPGLT++ERRFLGPIVLGSSVLFYAGI FSY VL
Sbjct: 61  TTLKVSGYCGLLLGSPVILYEVIAFVLPGLTKSERRFLGPIVLGSSVLFYAGITFSYLVL 120

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFV YAEG VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQ LLGQ+GLV  DQM
Sbjct: 121 TPAALNFFVTYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVPGDQM 180

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAA++TPSTDP+TQ+LLAAPLLGLY GGAWMVKLTGR
Sbjct: 181 LSIWRYVVVGAVVAAAIVTPSTDPLTQILLAAPLLGLYLGGAWMVKLTGR 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493436|ref|XP_004159288.1| PREDICTED: sec-independent protein translocase protein TATC, chloroplastic-like [Cucumis sativus]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/230 (88%), Positives = 221/230 (96%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MS+FDHLEELRQRIFVSVLAVGAAI+GCFA+SK+LI+ LEAPVK +GVRFLQL PGEFFF
Sbjct: 118 MSVFDHLEELRQRIFVSVLAVGAAIVGCFAFSKDLILLLEAPVKEQGVRFLQLGPGEFFF 177

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTR ER+FL PIVLGSS+LFYAGIAFSY VL
Sbjct: 178 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRTERQFLAPIVLGSSILFYAGIAFSYVVL 237

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFV+YAEG VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQ+LLGQ+GLV+ DQM
Sbjct: 238 TPAALNFFVSYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQILLGQLGLVSGDQM 297

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAAVLTPSTDP+TQ+LLAAPLLGLY GGAW+VKL+GR
Sbjct: 298 LSIWRYVVVGAVVAAAVLTPSTDPLTQVLLAAPLLGLYLGGAWVVKLSGR 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434578|ref|XP_004135073.1| PREDICTED: sec-independent protein translocase protein TATC, chloroplastic-like [Cucumis sativus]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/230 (88%), Positives = 221/230 (96%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MS+FDHLEELRQRIFVSVLAVGAAI+GCFA+SK+LI+ LEAPVK +GVRFLQL PGEFFF
Sbjct: 118 MSVFDHLEELRQRIFVSVLAVGAAIVGCFAFSKDLILLLEAPVKEQGVRFLQLGPGEFFF 177

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTR ER+FL PIVLGSS+LFYAGIAFSY VL
Sbjct: 178 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRTERQFLAPIVLGSSILFYAGIAFSYVVL 237

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFV+YAEG VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQ+LLGQ+GLV+ DQM
Sbjct: 238 TPAALNFFVSYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQILLGQLGLVSGDQM 297

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           LSIWRYVVVGAV+AAAVLTPSTDP+TQ+LLAAPLLGLY GGAW+VKL+GR
Sbjct: 298 LSIWRYVVVGAVVAAAVLTPSTDPLTQVLLAAPLLGLYLGGAWVVKLSGR 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116780922|gb|ABK21881.1| unknown [Picea sitchensis]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/229 (86%), Positives = 216/229 (94%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           MSIFDHLEELR+RIFVSVLAVG AIL CFA+SK+LI FLEAPV S+GVRFLQL+PGEFFF
Sbjct: 138 MSIFDHLEELRERIFVSVLAVGVAILACFAFSKDLIFFLEAPVSSQGVRFLQLSPGEFFF 197

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           TT+KVSGYCGLLLGSPVILYEIIAFV+PGLTR E++FLGPIVLGSSVLFYAG+AFSY VL
Sbjct: 198 TTIKVSGYCGLLLGSPVILYEIIAFVVPGLTRNEKKFLGPIVLGSSVLFYAGLAFSYAVL 257

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
           TPAALNFFV+YAEGVVESLWSIDQYFEFVLVLMFSTGL+FQVPVIQLLLGQ  LVT DQM
Sbjct: 258 TPAALNFFVSYAEGVVESLWSIDQYFEFVLVLMFSTGLAFQVPVIQLLLGQTRLVTGDQM 317

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTG 229
           LS+WRYVVVGAVIAAAVLTPSTDP+TQMLLA PL+GLY GGA++VK T 
Sbjct: 318 LSVWRYVVVGAVIAAAVLTPSTDPLTQMLLAGPLIGLYLGGAFLVKFTA 366

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2045750	340	APG2 "ALBINO AND PALE GREEN 2"	1.0	0.676	0.843	3.4e-100
UNIPROTKB|Q94G17	353	TATC "Sec-independent protein	1.0	0.651	0.778	4.8e-94
UNIPROTKB|Q9KVQ3	250	VC_0088 "Putative uncharacteri	0.986	0.908	0.329	5e-28
TIGR_CMR|CPS_0165	255	CPS_0165 "Sec-independent peri	0.930	0.839	0.324	5e-28
TIGR_CMR|VC_0088	250	VC_0088 "conserved hypothetica	0.986	0.908	0.329	5e-28
TIGR_CMR|CPS_3043	252	CPS_3043 "Sec-independent peri	0.943	0.861	0.319	8.2e-28
TIGR_CMR|CHY_0863	243	CHY_0863 "sec-independent prot	0.947	0.897	0.307	1.7e-27
TIGR_CMR|DET_1599	261	DET_1599 "Sec-independent prot	0.995	0.877	0.313	2.8e-27
UNIPROTKB|P69423	258	tatC [Escherichia coli K-12 (t	0.926	0.825	0.339	1.8e-25
NCBI_NP|NP_354692.1	267	tatC "SEC-independent protein	0.986	0.850	0.316	7.6e-25

TAIR|locus:2045750 APG2 "ALBINO AND PALE GREEN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 194/230 (84%), Positives = 205/230 (89%)

Query:     1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
             M+IFDHLEELR+RIFVSVLAVGAAILGCFA+SK+LI+FLEAPVK++GVRFLQLAPGEFFF
Sbjct:   111 MTIFDHLEELRERIFVSVLAVGAAILGCFAFSKDLIVFLEAPVKTQGVRFLQLAPGEFFF 170

Query:    61 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
             TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIV GSS+LFYAG+AFSYWVL
Sbjct:   171 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVFGSSLLFYAGLAFSYWVL 230

Query:   121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSDQM 180
             TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVI          + DQM
Sbjct:   231 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVVSGDQM 290

Query:   181 LSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
             LSIWRY           +TPSTDPVTQMLLA PLLGLY GGAWMVKLTGR
Sbjct:   291 LSIWRYVVVGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 340

GO:0005886 "plasma membrane" evidence=ISM

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0031361 "integral to thylakoid membrane" evidence=IDA

GO:0043235 "receptor complex" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q94G17 TATC "Sec-independent protein translocase protein TATC, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 179/230 (77%), Positives = 197/230 (85%)

Query:     1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
             MSIFDHLEELR+RIF+SVL VG +ILGCFA+SK+L+  LEAPVKSEGVRFLQLAPGEFFF
Sbjct:   124 MSIFDHLEELRERIFISVLGVGGSILGCFAFSKDLVKILEAPVKSEGVRFLQLAPGEFFF 183

Query:    61 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
             TTLKVSGYCGLLLGSP+ILYEIIAF++PGLT+ ER+FLGPIVLGSSVLFYAGI FSY VL
Sbjct:   184 TTLKVSGYCGLLLGSPIILYEIIAFIIPGLTKEERKFLGPIVLGSSVLFYAGITFSYLVL 243

Query:   121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSDQM 180
              PAALNFFVNYAEG VESLWSIDQYFEFVLVLMFSTGLSFQVP+I          + D+M
Sbjct:   244 VPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVSGDKM 303

Query:   181 LSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
             LS+WRY           +TPSTDP+TQ+LLAAPLLGLY GGAWMVKL GR
Sbjct:   304 LSVWRYVVVGAVVAAAVVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR 353

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

UNIPROTKB|Q9KVQ3 VC_0088 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 76/231 (32%), Positives = 113/231 (48%)

Query:     3 IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSE---GVRFLQLAPGEFF 59
             +  HL ELR R+  +V AV    +G   +S E+  F+  P+      G   +       F
Sbjct:    10 LISHLLELRNRLLKAVAAVVVIFIGLIYFSNEIYEFVSKPLVERLPAGATMIATDVASPF 69

Query:    60 FTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWV 119
             FT LK++    + L  P ILY++ AFV PGL + ERR + P+++ SS+LFY G+AF+Y+V
Sbjct:    70 FTPLKLTLIAAVFLAVPFILYQVWAFVAPGLYKHERRLIFPLLVSSSLLFYCGVAFAYFV 129

Query:   120 LTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSDQ 179
             + P    FF   + G VE    I  Y +FVL L  + G++F+VPV           T   
Sbjct:   130 VFPLVFGFFTAISLGGVEFATDIASYLDFVLALFLAFGIAFEVPVAIILLCWTGATTPKS 189

Query:   180 MLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
             +     Y           LTP  D ++Q LLA P+  L+  G +  +   R
Sbjct:   190 LSEKRPYIIVGAFVVGMLLTPP-DMISQTLLAIPMCLLFEVGLFFARFYTR 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0165 CPS_0165 "Sec-independent periplasmic protein translocation protein TatC" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 72/222 (32%), Positives = 119/222 (53%)

Query:     2 SIFDHLEELRQRIFVSVLAVGAAILGCFAY-SKELIMFLEAPVKS---EGVRFLQLAPGE 57
             S+FDHL ELR R+  S+L V   +  C  Y ++++  ++  P+ +   EG + +      
Sbjct:    10 SLFDHLLELRNRLLRSILGV-LIVFCCLVYFAQDIYQYVAQPLLATMPEGSQMIATDVAS 68

Query:    58 FFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSY 117
              FF   K++    L +  P +LY++ +FV PGL   E+R + P++ GS++LFY+GIAF+Y
Sbjct:    69 PFFAPFKLTLVLSLFIAMPFVLYQVWSFVAPGLYSNEKRMIAPLMFGSTLLFYSGIAFAY 128

Query:   118 WVLTPAALNFFVNYA-EGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXT 176
             +++ P    FF + A EGVV +   I  Y +F+L L F+ G +F++P+           T
Sbjct:   129 FLVFPVVFAFFTSVAPEGVVIAT-DISSYLDFILKLFFAFGAAFEIPIAIILMCWTGMTT 187

Query:   177 SDQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLY 218
              D +     Y           LTP  D ++Q +LA P+L L+
Sbjct:   188 PDSLREKRPYVVVGAFVIGMLLTPP-DIISQTMLAVPMLILF 228

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|VC_0088 VC_0088 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 76/231 (32%), Positives = 113/231 (48%)

Query:     3 IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSE---GVRFLQLAPGEFF 59
             +  HL ELR R+  +V AV    +G   +S E+  F+  P+      G   +       F
Sbjct:    10 LISHLLELRNRLLKAVAAVVVIFIGLIYFSNEIYEFVSKPLVERLPAGATMIATDVASPF 69

Query:    60 FTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWV 119
             FT LK++    + L  P ILY++ AFV PGL + ERR + P+++ SS+LFY G+AF+Y+V
Sbjct:    70 FTPLKLTLIAAVFLAVPFILYQVWAFVAPGLYKHERRLIFPLLVSSSLLFYCGVAFAYFV 129

Query:   120 LTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSDQ 179
             + P    FF   + G VE    I  Y +FVL L  + G++F+VPV           T   
Sbjct:   130 VFPLVFGFFTAISLGGVEFATDIASYLDFVLALFLAFGIAFEVPVAIILLCWTGATTPKS 189

Query:   180 MLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
             +     Y           LTP  D ++Q LLA P+  L+  G +  +   R
Sbjct:   190 LSEKRPYIIVGAFVVGMLLTPP-DMISQTLLAIPMCLLFEVGLFFARFYTR 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3043 CPS_3043 "Sec-independent periplasmic protein translocation protein TatC" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 71/222 (31%), Positives = 113/222 (50%)

Query:     3 IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAP---VKSEGVRFLQLAPGEFF 59
             +FDHL ELR R+  +VL+V         ++ ++  ++  P   V  E  + +       F
Sbjct:    10 LFDHLIELRSRLLKAVLSVLVFFCSMIYFANDIYAYVSLPLLAVMPESGQMIATGVASSF 69

Query:    60 FTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWV 119
             F   K++    + +  P IL++I +F+ PGL R E++ +GP++LGSS LFY GI+F+Y+V
Sbjct:    70 FAPFKLTIVLAIFISMPYILFQIWSFIAPGLYRNEKKLMGPLMLGSSFLFYGGISFAYYV 129

Query:   120 LTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSDQ 179
             + P    FF + A   V     I  Y +FVL L F+ G+ F++P++          T   
Sbjct:   130 VFPIVFAFFTSVAPEGVNIATDISSYLDFVLKLFFAFGIVFEIPIVIILLCWTGFTTPKS 189

Query:   180 MLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLY-FG 220
             +     Y           LTP  D ++Q LLA P+L L+ FG
Sbjct:   190 LREKRPYVAVGSFVIAMLLTPP-DIISQTLLAIPMLLLFEFG 230

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|CHY_0863 CHY_0863 "sec-independent protein translocase protein TatC" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 67/218 (30%), Positives = 119/218 (54%)

Query:     1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
             M++F+HLE LR+ I +SV+A+    +  + Y    +  L  PV +  ++ + +   E F 
Sbjct:     6 MTLFEHLEALRKVIIISVIAIVIGSIIAYNYVDYFLNILLQPVTALKMKLVFINVTEAFM 65

Query:    61 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
             T LK++   G++L SP+IL++I +FV PGL  AER+F+  ++    +LF AGI F+++ +
Sbjct:    66 TKLKIAIILGIILASPIILWQIWSFVAPGLKPAERKFILRMIPVIIILFVAGIVFAFFTV 125

Query:   121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSDQM 180
                A  F + +   ++  + +I +Y  F L  +   GL F++PV+          + + +
Sbjct:   126 FQIATRFLLQFGGDIMSPMITIGKYISFALNFLIPFGLVFELPVVVYILAKLNIISHEFL 185

Query:   181 LSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLY 218
             +   +Y           LTP  D ++Q+L+AAPLL LY
Sbjct:   186 VKNRKYALLVVFILAAALTPGPDVISQLLMAAPLLILY 223

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|DET_1599 DET_1599 "Sec-independent protein translocase TatC" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 72/230 (31%), Positives = 116/230 (50%)

Query:     1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
             M I  H  ELRQR   S++A+   +L  F ++  +I FL AP   +  +  QL   E+  
Sbjct:    25 MPIGGHFNELRQRFTRSIIALIVGVLVAFFFATPIIGFLTAPGGPD-FKPAQLGVMEYAS 83

Query:    61 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
                 VS + G +L SP ILY++IAF+ P L R E++F+   +   + +F  G+AF+Y+V 
Sbjct:    84 VFFNVSLWAGFILASPYILYQLIAFITPALNRNEKKFIFTAIPAVTGMFLLGLAFAYYVA 143

Query:   121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSDQM 180
              P ALN  +++ + VV ++  I  Y   V  ++ + GL F+ P +          +   +
Sbjct:   144 LPPALNILLHWGDDVVLTVVGIRDYMNVVTRILIALGLIFETPFVIMVLARLGVVSPKWL 203

Query:   181 LSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
              S  +            +TP+ DPV Q ++A PL+ LY    W+ KL  R
Sbjct:   204 ASKRKIWIVVAFVIAALITPTFDPVNQTIMAGPLIVLYEISIWLSKLVYR 253

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|P69423 tatC [Escherichia coli K-12 (taxid:83333)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 75/221 (33%), Positives = 115/221 (52%)

Query:     3 IFDHLEELRQRIFVSVLAVGAAILGCFAY-SKELIMFLEAP-VKS--EGVRFLQLAPGEF 58
             +  HL ELR+R+   ++AV    L C  Y + ++   + AP +K   +G   +       
Sbjct:     9 LITHLIELRKRLLNCIIAVIVIFL-CLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASP 67

Query:    59 FFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYW 118
             FFT +K++    L+L +PVILY++ AF+ P L + ERR + P+++ SS+LFY G+AF+Y+
Sbjct:    68 FFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYF 127

Query:   119 VLTPAALNFFVNYA-EGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTS 177
             V+ P A  F  N A EGV  S   I  Y  FV+ L  + G+SF+VPV           + 
Sbjct:   128 VVFPLAFGFLANTAPEGVQVST-DIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGITSP 186

Query:   178 DQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLY 218
             + +     Y           LTP  D  +Q LLA P+  L+
Sbjct:   187 EDLRKKRPYVLVGAFVVGMLLTPP-DVFSQTLLAIPMYCLF 226

GO:0016020 "membrane" evidence=IDA

GO:0008565 "protein transporter activity" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IDA;IMP

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IMP

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0065002 "intracellular protein transmembrane transport" evidence=IDA;IMP

NCBI_NP|NP_354692.1 tatC "SEC-independent protein translocase protein" [Agrobacterium fabrum str. C58 (taxid:176299)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 77/243 (31%), Positives = 117/243 (48%)

Query:     3 IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGV---------RFLQL 53
             + +HL ELR R+  S+ A   A + CFA +K L   L  P K   +           +  
Sbjct:    12 LIEHLMELRTRLIWSLGAFFIAFIACFAVAKHLFNLLVIPYKWAVIWAGLDVAKSSLIYT 71

Query:    54 APGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGI 113
             AP EFFFT +KV+ +  +++  PVI  ++  FV PGL + ER    P ++ S +LF  G 
Sbjct:    72 APQEFFFTQIKVAMFGAMVISFPVIASQLYKFVAPGLYKNERAAFLPFLIASPILFLIGA 131

Query:   114 AFSYWVLTPAALNFFVNY----AEGVVE-SLW-SIDQYFEFVLVLMFSTGLSFQVPVIXX 167
             A  Y+  TP  + FF+       +G V  SL   + +Y   ++ L+ S GL FQ+PV+  
Sbjct:   132 ALVYFFFTPMVMWFFLAMQQLPVDGEVAISLMPKVSEYLSLIMTLVLSFGLVFQLPVVTT 191

Query:   168 XXXXXXXXTSDQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKL 227
                     TSD +    ++           LTP  DP++Q+ LA P + LY    +M +L
Sbjct:   192 LLARVGILTSDWLREKRKFAIVMAFVVAAVLTPP-DPMSQIGLALPAIILYEISIYMARL 250

Query:   228 TGR 230
               R
Sbjct:   251 VER 253

GO:0005215 "transporter activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJV5	TATC_ARATH	No assigned EC number	0.9260	1.0	0.6764	yes	no
O25701	TATC_HELPY	No assigned EC number	0.3333	0.9086	0.8260	yes	no
D2BJS8	TATC_DEHSV	No assigned EC number	0.3478	0.9956	0.8740	yes	no
Q9PHT8	TATC_CAMJE	No assigned EC number	0.3272	0.9130	0.8571	yes	no
Q9AVE6	TATC_ORYSJ	No assigned EC number	0.9043	1.0	0.6406	yes	no
Q9RW63	TATC_DEIRA	No assigned EC number	0.3049	0.9434	0.8037	yes	no
Q94G17	TATC_PEA	No assigned EC number	0.8608	1.0	0.6515	N/A	no
P54086	TATC_SYNY3	No assigned EC number	0.6173	0.9913	0.8976	N/A	no
O78493	YCF43_GUITH	No assigned EC number	0.5066	0.9695	0.7689	yes	no
P51264	YCF43_PORPU	No assigned EC number	0.5090	0.9478	0.8582	N/A	no
O05523	TATCY_BACSU	No assigned EC number	0.3196	0.9434	0.8543	yes	no
P44560	TATC_HAEIN	No assigned EC number	0.3148	0.9217	0.8281	yes	no
Q9ZM59	TATC_HELPJ	No assigned EC number	0.3333	0.9086	0.8393	yes	no
Q3ADS0	TATC_CARHZ	No assigned EC number	0.3256	0.9478	0.8971	yes	no
Q92ES8	TATC_LISIN	No assigned EC number	0.3150	0.9434	0.8785	yes	no
C4IZX0	TATC_MAIZE	No assigned EC number	0.8782	1.0	0.6460	N/A	no
O67305	TATC_AQUAE	No assigned EC number	0.3474	0.9826	0.9416	yes	no
Q3A8D5	TATC_PELCD	No assigned EC number	0.3555	0.9260	0.852	yes	no
Q8FBI6	TATC_ECOL6	No assigned EC number	0.3392	0.9565	0.8527	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	APG2	APG2 (ALBINO AND PALE GREEN 2); proton motive force dependent protein transmembrane transporter; mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein. (340 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	HCF106	HCF106; proton motive force dependent protein transmembrane transporter; HCF106; nuclear gene f [...] (260 aa)	•			•			•		0.996
	SCY1	SCY1 (SecY Homolog 1); P-P-bond-hydrolysis-driven protein transmembrane transporter; SecY Homol [...] (551 aa)				•			•		0.978
	AT5G28750	thylakoid assembly protein, putative; thylakoid assembly protein, putative; FUNCTIONS IN- prote [...] (147 aa)	•		•	•			•		0.964
	AT4G01800	preprotein translocase secA subunit, putative; preprotein translocase secA subunit, putative; F [...] (1022 aa)				•			•		0.953
	CPSRP54	CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding [...] (564 aa)				•			•		0.882
	CPFTSY	CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding; chloropla [...] (366 aa)							•		0.851
	AT1G21650	ATP binding / protein binding; ATP binding / protein binding; FUNCTIONS IN- protein binding, AT [...] (1051 aa)							•		0.783
	AT2G44920	thylakoid lumenal 15 kDa protein, chloroplast; thylakoid lumenal 15 kDa protein, chloroplast; F [...] (224 aa)				•					0.756
	AT1G64510	ribosomal protein S6 family protein; ribosomal protein S6 family protein; FUNCTIONS IN- structu [...] (207 aa)				•					0.748
	ALB3	ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter; member of Chloro [...] (462 aa)				•			•		0.740

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
CHL00182	249	CHL00182, tatC, Sec-independent translocase compon	2e-87
TIGR00945	215	TIGR00945, tatC, Twin arginine targeting (Tat) pro	5e-84
COG0805	255	COG0805, TatC, Sec-independent protein secretion p	4e-66
pfam00902	212	pfam00902, TatC, Sec-independent protein transloca	3e-60
PRK10921	258	PRK10921, PRK10921, twin-arginine protein transloc	1e-34
TIGR01912	237	TIGR01912, TatC-Arch, Twin arginine targeting (Tat	3e-27

>gnl|CDD|177084 CHL00182, tatC, Sec-independent translocase component C; Provisional

 Score =  258 bits (661), Expect = 2e-87
 Identities = 122/229 (53%), Positives = 175/229 (76%), Gaps = 2/229 (0%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFF 60
           M + +HLEELRQR+F+S+  +    + CF   K ++  L+AP K  G++FLQL+PGE+FF
Sbjct: 22  MPLSEHLEELRQRLFLSLSILLLLTIVCFINVKSIVEILQAPAK--GIKFLQLSPGEYFF 79

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           +++K+S Y GLL+ SP I+Y+II F+LPGLT+ ER+ + P+++ S VLF  G+ F+Y+VL
Sbjct: 80  SSIKISFYTGLLISSPFIIYQIILFILPGLTKKERKIILPLLISSLVLFGLGLIFAYFVL 139

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
            PAALNFF+NY   VVE LWS DQYF+F+LVL FSTGL+FQ+P+IQ++LG + +++S QM
Sbjct: 140 VPAALNFFINYGSDVVEPLWSFDQYFDFILVLFFSTGLAFQIPIIQIVLGLLNIISSKQM 199

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTG 229
           LS WRYV++ + I  A+LTPSTDP+TQ+LL+  +L LYF G  ++KL  
Sbjct: 200 LSAWRYVILVSTIVGAILTPSTDPLTQLLLSLAILLLYFSGVIVLKLLK 248

Length = 249

>gnl|CDD|233202 TIGR00945, tatC, Twin arginine targeting (Tat) protein translocase TatC

 Score =  248 bits (636), Expect = 5e-84
 Identities = 122/216 (56%), Positives = 164/216 (75%), Gaps = 1/216 (0%)

Query: 3   IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTT 62
           +F+HLEELR+R+ +S++A   A   CF +SK +I  L+APV + GV F+  +P E FFT 
Sbjct: 1   LFEHLEELRKRLLISLIAFLVAFFICFYFSKPIIELLQAPVLALGVTFIATSPTEPFFTY 60

Query: 63  LKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTP 122
           +K+S   G++L SPVILY+I AF+LPGL   ERR L P++LGS +LF AG+AF+Y+VL P
Sbjct: 61  IKLSLIVGIILSSPVILYQIWAFILPGLYEHERRLLLPLLLGSILLFLAGLAFAYYVLFP 120

Query: 123 AALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLS 182
           AALNF + Y   VVE L SIDQYFEFVL L+FS G++FQVPV+Q+LLG++G+VT +Q+ S
Sbjct: 121 AALNFLLTYGADVVEILLSIDQYFEFVLKLLFSFGVAFQVPVLQVLLGRLGIVTYEQLRS 180

Query: 183 IWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLY 218
             RYV+VGA +  A+LTP  DP++Q+LLA PLL LY
Sbjct: 181 KRRYVIVGAFVIGAILTP-PDPLSQILLAIPLLLLY 215

This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409) [Protein fate, Protein and peptide secretion and trafficking]. Length = 215

>gnl|CDD|223876 COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]

 Score =  204 bits (521), Expect = 4e-66
 Identities = 86/236 (36%), Positives = 141/236 (59%), Gaps = 7/236 (2%)

Query: 1   MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSE-----GVRFLQLAP 55
             + +HL ELR+R+   ++A   A L  F ++K+L   L AP+         V  +  +P
Sbjct: 8   QPLIEHLIELRKRLLRILIAFIVAFLILFYFAKDLYELLVAPLTYAQLPEGAVELIATSP 67

Query: 56  GEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAF 115
            E FFT +K++ + GLLL  PVILY++ AF+ PGL + ERR + P+++ S VLF  G AF
Sbjct: 68  TEPFFTYIKLALFAGLLLALPVILYQLWAFIAPGLYKHERRLILPLLIPSFVLFLLGAAF 127

Query: 116 SYWVLTPAALNFFVNYAEGV-VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGL 174
           +Y+V+ P    F +++A    V    SI +Y  FVL L+ + G++F++PV+ +LL ++G+
Sbjct: 128 AYFVVFPLVFKFLLSFAAPDGVSPALSISKYLSFVLTLLLAFGVAFELPVVIVLLTRLGI 187

Query: 175 VTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           VT + +    RY +V A + AA++TP  D ++Q+LLA PL+ LY     + +   +
Sbjct: 188 VTPETLKKKRRYAIVAAFVIAAIITP-PDVLSQILLAIPLILLYELSILISRFVEK 242

Length = 255

>gnl|CDD|216181 pfam00902, TatC, Sec-independent protein translocase protein (TatC)

 Score =  188 bits (479), Expect = 3e-60
 Identities = 90/213 (42%), Positives = 137/213 (64%), Gaps = 4/213 (1%)

Query: 4   FDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFF 60
            +HLEELR+R+  S++A     + C+ +S+E+I+FL AP+ +      + +  +P E FF
Sbjct: 1   LEHLEELRKRLIYSLIAFILGFIICYFFSEEIILFLLAPLLNALPPNSKLIYTSPTEAFF 60

Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
           T LK+S + GL+L  P+ILY+I AF+ PGL + ERRFL P V  S +LF  G AF+Y+V+
Sbjct: 61  TYLKLSLFAGLILALPIILYQIWAFIAPGLYKNERRFLLPFVFASFLLFLLGAAFAYFVV 120

Query: 121 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 180
            P AL F + +    +E   SI +Y  FVL L+ + GL F++PVI +LL ++G+VT + +
Sbjct: 121 LPIALKFLLGFGPEGIEPQPSISEYLSFVLRLLLAFGLLFELPVILVLLAKLGIVTPEFL 180

Query: 181 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAP 213
               RY +V   I AA++TP  D ++Q+LLA P
Sbjct: 181 RKNRRYAIVLIFIIAAIITPP-DVISQLLLAIP 212

The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon. Length = 212

>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system subunit TatC; Provisional

 Score =  123 bits (311), Expect = 1e-34
 Identities = 76/216 (35%), Positives = 122/216 (56%), Gaps = 4/216 (1%)

Query: 6   HLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSE---GVRFLQLAPGEFFFTT 62
           HL ELR+R+   ++AV    L    ++ ++   + AP+  +   G   +       FFT 
Sbjct: 12  HLIELRKRLLNCIIAVLVIFLALVYFANDIYHLVSAPLIKQLPQGATMIATDVASPFFTP 71

Query: 63  LKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTP 122
           +K++    L+L +PVILY++ AF+ P L + ERR + P+++ SS+LFY G+AF+Y+V+ P
Sbjct: 72  IKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFP 131

Query: 123 AALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLS 182
            A  F    A   V+    I  Y  FV+ L  + G+SF+VPV  +LL  +G+ T + +  
Sbjct: 132 LAFGFLAKTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGVTTPEDLRK 191

Query: 183 IWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLY 218
              YV+VGA +   +LTP  D  +Q LLA P+  L+
Sbjct: 192 KRPYVLVGAFVVGMLLTPP-DVFSQTLLAIPMYCLF 226

Length = 258

>gnl|CDD|162597 TIGR01912, TatC-Arch, Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade

 Score =  103 bits (259), Expect = 3e-27
 Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 8/229 (3%)

Query: 6   HLEELRQRIFVS--VLAVGAAILGCFAYSKELIMFLEAPVKSEG-----VRFLQLAPGEF 58
            L   R  + +    +  G+ +     ++  +I  L   +            +  +P   
Sbjct: 5   ALATFRLILLLVALAIVTGSVLGWLTIFTPFIIAALRESILPLLAYHVIATLIAPSPFAA 64

Query: 59  FFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYW 118
               +K + + GLLL SPV+ YE   F+ P L   ERR +  + + +  LF  G  F+YW
Sbjct: 65  LELRIKSAFFIGLLLASPVLAYEAYRFIKPALKPHERRQVRLLGVIAVGLFAFGALFAYW 124

Query: 119 VLTPAALNFFVNYAEGVVESL-WSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTS 177
           V+ P        +A  +  S    I +Y  F L L+ S GL+F+ PV+ + L ++G+V++
Sbjct: 125 VIFPLIFQILFEFASPLGLSAIMDIRKYTSFALKLILSFGLAFETPVVLVFLTRLGVVSA 184

Query: 178 DQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVK 226
             ++  WR +++  ++  AV+TP  D V+ +LLA PL+ LY     + K
Sbjct: 185 STLVDYWRVIILVVLVFGAVITPDPDVVSMILLAIPLIALYGLALVISK 233

This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409). Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
CHL00182	249	tatC Sec-independent translocase component C; Prov	100.0
PRK10921	258	twin-arginine protein translocation system subunit	100.0
TIGR01912	237	TatC-Arch Twin arginine targeting (Tat) protein tr	100.0
COG0805	255	TatC Sec-independent protein secretion pathway com	100.0
TIGR00945	215	tatC Twin arginine targeting (Tat) protein translo	100.0
PF00902	215	TatC: Sec-independent protein translocase protein	100.0

>CHL00182 tatC Sec-independent translocase component C; Provisional

Probab=100.00  E-value=2.4e-65  Score=442.37  Aligned_cols=228  Identities=54%  Similarity=0.999  Sum_probs=221.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccCceeeecCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 026975            1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILY   80 (230)
Q Consensus         1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~i~y   80 (230)
                      ||+.||++|||+|++|++++++++++++|++++++++.+.+|..  +.++++|+|+|+|++++|+|++.|+.+++|+++|
T Consensus        22 ~~l~~HL~ELR~Rli~~li~~~i~~~v~~~~~~~l~~~l~~p~~--~~~li~t~~~E~f~~~ikls~~~g~~~a~P~i~y   99 (249)
T CHL00182         22 MPLSEHLEELRQRLFLSLSILLLLTIVCFINVKSIVEILQAPAK--GIKFLQLSPGEYFFSSIKISFYTGLLISSPFIIY   99 (249)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCceEEcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999874  4469999999999999999999999999999999


Q ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhcHHHHHHHHHHHHHHHHHHH
Q 026975           81 EIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSF  160 (230)
Q Consensus        81 qiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~~~~~~~i~~y~~f~~~~~l~fgl~F  160 (230)
                      |+|+|++||||+||||..++++..+.++|.+|++|||+.++|.+++|+.+++++++++++|+++|++++.++.+++|++|
T Consensus       100 qiw~Fi~PgLy~~Er~~~~~~~~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f~~~~~~~~~~i~~Yl~f~~~~~l~fGl~F  179 (249)
T CHL00182        100 QIILFILPGLTKKERKIILPLLISSLVLFGLGLIFAYFVLVPAALNFFINYGSDVVEPLWSFDQYFDFILVLFFSTGLAF  179 (249)
T ss_pred             HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975          161 QVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR  230 (230)
Q Consensus       161 ~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~  230 (230)
                      |+|+++.++++.|++|+++++|+|||++++++++||++|||||++||+++|+|++++||+|++++|++++
T Consensus       180 elPvi~~~L~~~givs~~~L~~~Rr~~~v~~~i~aAiiTP~pD~~sqi~laiPl~lLYEisI~i~~~~~~  249 (249)
T CHL00182        180 QIPIIQIVLGLLNIISSKQMLSAWRYVILVSTIVGAILTPSTDPLTQLLLSLAILLLYFSGVIVLKLLKK  249 (249)
T ss_pred             HHHHHHHHHHHcCCcCHHHHHhhCchHhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999889999999999999999999999998864

>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional

Probab=100.00  E-value=8.4e-65  Score=441.22  Aligned_cols=229  Identities=34%  Similarity=0.613  Sum_probs=221.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccc---cCceeeecCcChHHHHHHHHHHHHHHHHHHHH
Q 026975            1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPV   77 (230)
Q Consensus         1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~---~~~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~   77 (230)
                      ||+.||++|||+|+++++++++++++++|++++++++++.+|+.+   ++.++++|+|+|+|++++|+|+++|+++++|+
T Consensus         7 ~~l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~l~~~l~~pl~~~~~~~~~li~t~~~e~f~~~lk~sl~~g~~la~P~   86 (258)
T PRK10921          7 QPLISHLIELRKRLLNCIIAVLVIFLALVYFANDIYHLVSAPLIKQLPQGATMIATDVASPFFTPIKLTFMVSLILSAPV   86 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeecCchHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999843   35689999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhcHHHHHHHHHHHHHHHH
Q 026975           78 ILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTG  157 (230)
Q Consensus        78 i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~~~~~~~i~~y~~f~~~~~l~fg  157 (230)
                      ++||+|+|++||||+||||+.++++..+.++|.+|+.|+|++++|.+++|+.+++++++++.+++++|++++.++++++|
T Consensus        87 ilyqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~y~~vlP~~~~Fl~~f~~~~~~~~~~i~~Y~~fv~~~~l~fG  166 (258)
T PRK10921         87 ILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGVQVSTDIASYLSFVMALFMAFG  166 (258)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975          158 LSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR  230 (230)
Q Consensus       158 l~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~  230 (230)
                      ++||+|+++.++++.|++|+++++|+|||++++++++||++|| ||++||+++|+|++++||+|++++++.+|
T Consensus       167 l~FelPli~~~L~~~giv~~~~l~~~Rr~~~v~~~iiaAiiTP-pD~isq~llaiPl~lLYEisI~i~~~~~~  238 (258)
T PRK10921        167 VSFEVPVAIVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTP-PDVFSQTLLAIPMYCLFEIGVFFSRFYVG  238 (258)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHhcCcHHhHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999 79999999999999999999999998654

>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade

Probab=100.00  E-value=3.5e-63  Score=426.42  Aligned_cols=228  Identities=27%  Similarity=0.478  Sum_probs=219.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh--cchHHHHHHHhcccccc-----CceeeecCcChHHHHHHHHHHHHHHHHHH
Q 026975            3 IFDHLEELRQRIFVSVLAVGAAILGCF--AYSKELIMFLEAPVKSE-----GVRFLQLAPGEFFFTTLKVSGYCGLLLGS   75 (230)
Q Consensus         3 l~~Hl~ELR~Rl~~~~~~~~~~~~~~~--~~~~~~~~~l~~p~~~~-----~~~~i~~~~~E~f~~~l~~s~~~~~~~~~   75 (230)
                      +.||++|||+|++++++++++++++++  ++++++++++.+|+.+.     +.++++|+|+|+|.+++|+|++.|+.+++
T Consensus         2 ~~~Hl~ELR~Rli~~~i~~~~~~~~~~~~~~~~~i~~~l~~p~~~~~~~~~~~~li~~~~~e~f~~~lk~s~~~g~~~~~   81 (237)
T TIGR01912         2 LLIALATFRLILLLVALAIVTGSVLGWLTIFTPFIIAALRESILPLLAYHVIATLIAPSPFAALELRIKSAFFIGLLLAS   81 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCceeEEcCchHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999  99999999999987542     24799999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhcHHHHHHHHHHHHH
Q 026975           76 PVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAE-GVVESLWSIDQYFEFVLVLMF  154 (230)
Q Consensus        76 P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~-~~~~~~~~i~~y~~f~~~~~l  154 (230)
                      |+++||+|+|++||||+||||..++++..+.++|.+|++++|+.++|.+++|+.++++ +++++.+|++||++++.++++
T Consensus        82 P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~f~~~f~~~~~~~~~~~i~~Y~~f~~~~~~  161 (237)
T TIGR01912        82 PVLAYEAYRFIKPALKPHERRQVRLLGVIAVGLFAFGALFAYWVIFPLIFQILFEFASPLGLSAIMDIRKYTSFALKLIL  161 (237)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccceeecHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999975 468999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975          155 STGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR  230 (230)
Q Consensus       155 ~fgl~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~  230 (230)
                      ++|++||+|+++.++++.|++|+++++|+|||++++++++||++|||||++||+++|+|++++||+|++++|+.+|
T Consensus       162 ~fGl~FelPvv~~~L~~~giv~~~~l~~~rr~~~v~~~i~aAiiTP~pD~~sq~~laiPl~~LYeisi~i~~~~~k  237 (237)
T TIGR01912       162 SFGLAFETPVVLVFLTRLGVVSASTLVDYWRVIILVVLVFGAVITPDPDVVSMILLAIPLIALYGLALVISKRVEK  237 (237)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            9999999999999999999999999999999999999999999999889999999999999999999999999876

This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).

>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.1e-62  Score=424.34  Aligned_cols=229  Identities=38%  Similarity=0.701  Sum_probs=220.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcccc-c---cC-ceeeecCcChHHHHHHHHHHHHHHHHHH
Q 026975            1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVK-S---EG-VRFLQLAPGEFFFTTLKVSGYCGLLLGS   75 (230)
Q Consensus         1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~-~---~~-~~~i~~~~~E~f~~~l~~s~~~~~~~~~   75 (230)
                      ||+.||+.|||+|+.++++++++++..++++.+++.+.+..|+. .   ++ .++++|+|+|++.+++|+|++.|+++++
T Consensus         8 ~pl~~hL~eLr~rL~~~~~~~~v~f~~~~~~~~~l~~~l~~p~~~~~l~~~~~~li~~~p~e~~~~~ik~a~~~gl~~a~   87 (255)
T COG0805           8 QPLIEHLIELRKRLLRILIAFIVAFLILFYFAKDLYELLVAPLTYAQLPEGAVELIATSPTEPFFTYIKLALFAGLLLAL   87 (255)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccceeEEcCcHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999975 2   22 3699999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhcHHHHHHHHHHHHH
Q 026975           76 PVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYA-EGVVESLWSIDQYFEFVLVLMF  154 (230)
Q Consensus        76 P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~-~~~~~~~~~i~~y~~f~~~~~l  154 (230)
                      |+++||+|+|++||||+||||..++++..|.+||++|++|+|++++|.+++|+.+++ ++++++..++++|+||++++++
T Consensus        88 P~i~yq~w~FiaPGLy~~Err~~~~~~~~s~~LF~~G~~faYfvv~P~~~~F~~~~~~~~~~~~~~~i~~y~~f~l~l~~  167 (255)
T COG0805          88 PVILYQLWAFIAPGLYKHERRLILPLLIPSFVLFLLGAAFAYFVVFPLVFKFLLSFAAPDGVSPALSISKYLSFVLTLLL  167 (255)
T ss_pred             HHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeeeecHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998 5689999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975          155 STGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR  230 (230)
Q Consensus       155 ~fgl~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~  230 (230)
                      +||++||+|+++.++++.|++|+++++++|||++++++++||++|| ||++||+++|+||++|||+|++++|.++|
T Consensus       168 ~FGv~FElPvv~~~L~~~Giv~~~~L~~~rr~~iv~~fViaaviTP-pd~~sq~llaiPl~lLyElsi~~~r~~~~  242 (255)
T COG0805         168 AFGVAFELPVVIVLLTRLGIVTPETLKKKRRYAIVAAFVIAAIITP-PDVLSQILLAIPLILLYELSILISRFVEK  242 (255)
T ss_pred             HHHHHHHHHHHHHHHHHcCCccHHHHHHcCCeeeehHHHHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            9999999999999999999999999999999999999999999999 89999999999999999999999999875

>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC

Probab=100.00  E-value=3.4e-61  Score=409.20  Aligned_cols=215  Identities=57%  Similarity=0.957  Sum_probs=209.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccCceeeecCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026975            3 IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEI   82 (230)
Q Consensus         3 l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~i~yqi   82 (230)
                      +.||++|||+|++|++++++++++++|++++++++++.+|..+.+.++++|+|+|+|++++|+|++.|+.+++|+++||+
T Consensus         1 l~~Hl~ELR~Rl~~~~i~~~~~~~i~~~~~~~l~~~l~~p~~~~~~~li~t~~~e~f~~~lk~s~~~g~~~~~P~i~yqi   80 (215)
T TIGR00945         1 LFEHLEELRKRLLISLIAFLVAFFICFYFSKPIIELLQAPVLALGVTFIATSPTEPFFTYIKLSLIVGIILSSPVILYQI   80 (215)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEecCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999998766778999999999999999999999999999999999


Q ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 026975           83 IAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQV  162 (230)
Q Consensus        83 w~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~~~~~~~i~~y~~f~~~~~l~fgl~F~l  162 (230)
                      |+|++||||+||||+.++++..+..+|..|+++||++++|.+++|+.+++++++++.++++||++++.++++++|++||+
T Consensus        81 w~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~F~~~~~~~~~~~~~~i~~y~~f~~~~~l~fGl~Fql  160 (215)
T TIGR00945        81 WAFILPGLYEHERRLLLPLLLGSILLFLAGLAFAYYVLFPAALNFLLTYGADVVEILLSIDQYFEFVLKLLFSFGVAFQV  160 (215)
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 026975          163 PVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLY  218 (230)
Q Consensus       163 Pvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~Ly  218 (230)
                      |+++.++++.|++|+++++|+|||++++++++||++|| ||++||+++++|++++|
T Consensus       161 Pli~~~l~~~giv~~~~l~~~Rr~~~~~~~i~aa~iTP-pD~~sq~~la~Pl~~LY  215 (215)
T TIGR00945       161 PVLQVLLGRLGIVTYEQLRSKRRYVIVGAFVIGAILTP-PDPLSQILLAIPLLLLY  215 (215)
T ss_pred             HHHHHHHHHcCCCCHHHHHhhhHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999 79999999999999987

This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).

>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif

Probab=100.00  E-value=4.1e-57  Score=384.21  Aligned_cols=209  Identities=41%  Similarity=0.728  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccC-----ceeeecCcChHHHHHHHHHHHHHHHHHHHHH
Q 026975            4 FDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEG-----VRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI   78 (230)
Q Consensus         4 ~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~-----~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~i   78 (230)
                      +||++|||+|++|+++++++++++++++++++++++.+|+.+..     .++++|+|+|++.+++|+|++.|+++++|++
T Consensus         1 ~~Hl~ELr~Rl~~~li~~~i~~~v~~~~~~~l~~~l~~p~~~~~~~~~~~~li~~~~~e~f~~~lk~s~~~~~~~~~P~~   80 (215)
T PF00902_consen    1 WEHLEELRYRLIYSLISFIIAFIVCFWFSEELIYFLIKPLPQILPSQNSVKLIFTSPTEAFFTYLKLSFFLGLIISLPYI   80 (215)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccccccceEEECChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999987522     4899999999999999999999999999999


Q ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-hhhhhcHHHHHHHHHHHHHHHH
Q 026975           79 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGV-VESLWSIDQYFEFVLVLMFSTG  157 (230)
Q Consensus        79 ~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~-~~~~~~i~~y~~f~~~~~l~fg  157 (230)
                      +||+|+|++||||+||||+.+++...+.++|.+|+.+||+.++|.+++|+.+++.++ +++++|+++|++++.++.+++|
T Consensus        81 ~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~~~~~~~~~~i~~y~~f~~~~~~~~g  160 (215)
T PF00902_consen   81 LYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSPTSGIQPEPSISSYLNFVIQFLLIFG  160 (215)
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998765 4999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 026975          158 LSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAP  213 (230)
Q Consensus       158 l~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~p  213 (230)
                      ++||+|+++..+++.|++|+++++|+|||++++++++||++|| ||++||+++++|
T Consensus       161 l~FqlPli~~~L~~~giv~~~~l~~~rr~~~~~~~iiaa~itP-pD~~sql~l~iP  215 (215)
T PF00902_consen  161 LIFQLPLIMFFLVRLGIVSPKFLRKYRRYAYFGIFIIAAFITP-PDPISQLLLAIP  215 (215)
T ss_pred             HHHHHHHHHHHHHHcCCcCHHHHHHhhhHHHHHHHHHHHHhcC-chHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999 899999999987

This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
4b4a_A	249	Structure Of The Tatc Core Of The Twin Arginine Pro		6e-25

>pdb|4B4A|A Chain A, Structure Of The Tatc Core Of The Twin Arginine Protein Translocation System Length = 249

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 10/232 (4%)
Query: 5   DHLEELRQRIFVSVLA--VGAAILGCFAYSKELIMFLEAPV-KS-EGVRFLQLAPGEFFF 60
           +HL ELR R+ +S++A  +G+ I   F ++K +   L+ P+ KS   V  + L+P E  F
Sbjct: 5   EHLRELRYRLIISIIAFLIGSGI--AFYFAKYVFEILKEPILKSYPEVELITLSPTEPLF 62
Query: 61  TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 120
             +K+S   G ++ SPVILY+   F+ P L   E+R   P++LGS +LF  G  F+Y+++
Sbjct: 63  ILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFXLGALFAYFIV 122
Query: 121 TPAALNFF--VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSD 178
            P AL F   + + + +     S+D Y  FVL L+ + G++F+ P++          T +
Sbjct: 123 LPLALKFLLGLGFTQLLATPYLSVDXYISFVLKLVVAFGIAFEXPIVLYVLQKAGVITPE 182
Query: 179 QMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 230
           Q+ S  +Y           + P  D  TQ+L A PLL LY    ++ KL  R
Sbjct: 183 QLASFRKYFIVIAFVIGAIIAP--DVSTQVLXAIPLLLLYEISIFLGKLATR 232

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
4b4a_A	249	TATC, SEC-independent protein translocase protein	100.0

>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}

Probab=100.00  E-value=4.1e-66  Score=446.14  Aligned_cols=227  Identities=34%  Similarity=0.605  Sum_probs=214.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccc---cCceeeecCcChHHHHHHHHHHHHHHHHHHHH
Q 026975            1 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPV   77 (230)
Q Consensus         1 m~l~~Hl~ELR~Rl~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~---~~~~~i~~~~~E~f~~~l~~s~~~~~~~~~P~   77 (230)
                      ||+.||++|||+|++++++++++++++++++++++++++.+|..+   ++ ++++|+|+|+|.+++|+|++.|+++++|+
T Consensus         1 m~l~~HL~ELR~Rli~~~i~~~v~~~~~~~~~~~i~~~l~~P~~~~~~~~-~li~t~~~e~f~~~lkvs~~~g~~~a~P~   79 (249)
T 4b4a_A            1 MPLTEHLRELRYRLIISIIAFLIGSGIAFYFAKYVFEILKEPILKSYPEV-ELITLSPTEPLFILIKISLAVGFIIASPV   79 (249)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTS-CEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-CeeecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999863   23 89999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhh--cHHHHHHHHHHHHHH
Q 026975           78 ILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLW--SIDQYFEFVLVLMFS  155 (230)
Q Consensus        78 i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~Fl~~~~~~~~~~~~--~i~~y~~f~~~~~l~  155 (230)
                      ++||+|+|++||||+||||+..+++..+..+|..|++|||++++|.+++|+.+++++++++++  ++++|++++.++.++
T Consensus        80 ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~  159 (249)
T 4b4a_A           80 ILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVA  159 (249)
T ss_dssp             HHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988888888  999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026975          156 TGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR  230 (230)
Q Consensus       156 fgl~F~lPvi~~~l~~~giv~~~~l~~~rr~~~~~~~i~aaiitP~pD~~sqi~la~pl~~LyE~~i~i~~~~~~  230 (230)
                      +|++||+|+++.++++.|++|+++++|+|||++++++++||++||  |++||+++|+|+++|||+|++++|+++|
T Consensus       160 fGl~FelPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiTP--D~~sq~llaiPl~lLYEisi~i~~~~~~  232 (249)
T 4b4a_A          160 FGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIAP--DVSTQVLMAIPLLLLYEISIFLGKLATR  232 (249)
T ss_dssp             HHHHTSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHTCCC---
T ss_pred             HHHHHHHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999  9999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00