Citrus Sinensis ID: 026980

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MSNPHSDTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAASYWI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEcccccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHHcHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEcccccccccHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccHEEEEEEHcHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msnphsdtiplhassqsdIDEIENLinaspatvlparppspprpatipvssapfiqsnippppptssnqkvpsvpvppplpsstisggsrpniastgfgsppntltepvwDTVKRDLSRIVSNLklvvfpnpyredpgkalrdwdlwgpFFFIVFLGLtlswsasvkKSEVFAVAFALLAAGAVILTLNVLLLVILSlstapppfsvSVVGMALSLLPICFLldaasywi
Flexible Loop (DISEMBL)
msnphsdtiplhassqSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIAStgfgsppntltePVWDTVKRDLSRIVsnlklvvfpnpyreDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAASYWI
Low Complexity Region (SEG)
MSNPHSDTIPLHASSQSDIDEIENLINASpatvlparppspprpatipvsSAPFIQSNIpppppTSSNQKvpsvpvppplpssTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEvfavafallaagaviltlnvlllvilslstAPPPFSVSVVGMALSLLPICFLLDAASYWI
Disordered region (IsUnstruct)
*********************************************************************************************************TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAASYW*
Disordered Region (DISOPRED)
******D*************EIENLINA****************************************************************************LTEPVWDTVKRDLSRIVSNLKLVVFPNPY*******LRDWDLWGPFFFIVFLGLTL**********VFAVAFALLAAGAVILTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAASYWI
Disordered Region (DISEMBL)
***********HASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPP**************PPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAASYWI
Disordered Region (DISPRO)
***************QSDIDEIENLINASPATV********************************************************************PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAASYWI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNPHSDTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAASYWI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q54RZ2	182	Protein YIPF6 homolog OS=	yes	no	0.386	0.489	0.423	2e-11
Q28CH8	233	Protein YIPF6 OS=Xenopus	yes	no	0.421	0.416	0.384	2e-08
Q9P6P8	225	Protein YIP4 OS=Schizosac	yes	no	0.543	0.555	0.309	6e-08
Q6IQ85	240	Protein YIPF6 OS=Danio re	yes	no	0.378	0.362	0.382	7e-08
Q4QQU5	236	Protein YIPF6 OS=Rattus n	yes	no	0.434	0.423	0.342	1e-06
Q96EC8	236	Protein YIPF6 OS=Homo sap	yes	no	0.378	0.368	0.361	1e-06
Q8BR70	236	Protein YIPF6 OS=Mus musc	yes	no	0.378	0.368	0.368	1e-06
A6QLC6	236	Protein YIPF6 OS=Bos taur	yes	no	0.373	0.364	0.378	2e-06
P53093	235	Protein YIP4 OS=Saccharom	yes	no	0.330	0.323	0.390	0.0007

>sp|Q54RZ2|YIPF6_DICDI Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 102 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLS 161
           PNTL EPV  T+ RDL  I   L  V+ P   R +    LRDWDLWGP    + + + LS
Sbjct: 7   PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 63

Query: 162 WSASVKKSEVFAVAFALLAAGAVILTLNVLLL 193
            SA  +K+  F + F ++  GA I+T+N  LL
Sbjct: 64  ISAEEQKALEFTIVFVVVWCGAAIVTVNGQLL 95

Dictyostelium discoideum (taxid: 44689)

>sp|Q28CH8|YIPF6_XENTR Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 93  IASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFF 152
           +AST      +TL EPV DT+ RDL  + +    V++P    +     LRDWDLWGP   
Sbjct: 38  MASTSQEDDLSTLDEPVKDTIMRDLKAVGNKFLHVMYP----KKSTTLLRDWDLWGPLVL 93

Query: 153 IVFLGLTLSWSASVKKSE---VFAVAFALLAAGAVILTLNVLLL 193
            V L L L    +  K +    FA  F ++  GAV++TLN  LL
Sbjct: 94  CVSLALMLQGGNADSKDDGGPQFAEVFVIIWFGAVVITLNSKLL 137

Xenopus tropicalis (taxid: 8364)

>sp|Q9P6P8|YIP4_SCHPO Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.13c PE=1 SV=1

 Score = 57.8 bits (138), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 14/139 (10%)

Query: 56  QSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKR 115
             N+    P  S+  V S  + P      I+G S   I  T F +  ++L EP+  T+  
Sbjct: 16  MENLLRMDPVRSSLDVESRAIEP----DNIAGES---IVETRF-TGGDSLDEPIRVTLFN 67

Query: 116 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSA-SVKKSEVFAV 174
           +   I   L  V++P        + LRDWDLWGP  F + + L L+ S   +++  VF V
Sbjct: 68  EFRAIGEKLVYVLYPKN-----AQVLRDWDLWGPLIFSLVIALALALSTDKIERESVFTV 122

Query: 175 AFALLAAGAVILTLNVLLL 193
             AL+  G  + +LN+ LL
Sbjct: 123 VVALIWFGEAVCSLNIKLL 141

May be involved in proper membrane localization of Rab GTPases.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6IQ85|YIPF6_DANRE Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
           +TL EPV DT+ RDL  +      V++P    +     LRDWDLWGP    V L L L  
Sbjct: 55  STLDEPVKDTILRDLRAVGQKFVHVMYP----KKSSALLRDWDLWGPLLLCVTLALMLQG 110

Query: 163 SASVKKSE---VFAVAFALLAAGAVILTLNVLLL 193
            ++  + +    FA  F ++  G+VI+TLN  LL
Sbjct: 111 GSADSEEDGRPQFAEVFVIIWFGSVIITLNSKLL 144

Danio rerio (taxid: 7955)

>sp|Q4QQU5|YIPF6_RAT Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 14/114 (12%)

Query: 84  TISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRD 143
           TI  G+R     +      +TL E +  T+ RDL  +      V++P          LRD
Sbjct: 39  TIPSGTRAQECDS------STLNESIRRTIMRDLKAVGRKFMHVLYPRK----SNTLLRD 88

Query: 144 WDLWGPFFFIVFLGLTLSWSASVKKSE----VFAVAFALLAAGAVILTLNVLLL 193
           WDLWGP    V L L L  S+   K +     FA  F ++  GAV +TLN  LL
Sbjct: 89  WDLWGPLILCVSLALMLQKSSVEGKRDGGSPEFAEVFVIIWFGAVTITLNSKLL 142

Rattus norvegicus (taxid: 10116)

>sp|Q96EC8|YIPF6_HUMAN Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
           +TL E V +T+ RDL  +      V++P          LRDWDLWGP    V L L L  
Sbjct: 52  STLNESVRNTIMRDLKAVGKKFMHVLYP----RKSNTLLRDWDLWGPLILCVTLALMLQR 107

Query: 163 SASVKKSE---VFAVAFALLAAGAVILTLNVLLL 193
            ++  + +    FA  F ++  GAV +TLN  LL
Sbjct: 108 DSADSEKDGGPQFAEVFVIVWFGAVTITLNSKLL 141

Homo sapiens (taxid: 9606)

>sp|Q8BR70|YIPF6_MOUSE Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
           +TL E +  T+ RDL  +      V++P          LRDWDLWGP    V L L L  
Sbjct: 52  STLNESIRRTIMRDLKAVGRKFMHVLYPRK----SNALLRDWDLWGPLILCVTLALMLQK 107

Query: 163 SASVKKSE----VFAVAFALLAAGAVILTLNVLLL 193
           S+   K++     FA  F ++  GAV +TLN  LL
Sbjct: 108 SSIDGKNDGGGPEFAEVFVIIWFGAVTITLNSKLL 142

Mus musculus (taxid: 10090)

>sp|A6QLC6|YIPF6_BOVIN Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
           +TL E V +T+ RDL  +      V++P          LRDWDLWGP    V L L L  
Sbjct: 52  STLNESVQNTIMRDLKAVGKKFMHVLYP----RKSNTLLRDWDLWGPLILCVTLALMLQ- 106

Query: 163 SASVKKSE----VFAVAFALLAAGAVILTLNVLLL 193
             SV   +     FA  F ++  GAV +TLN  LL
Sbjct: 107 RGSVDSEKDGGPQFAEVFVIVWFGAVTITLNSKLL 141

Bos taurus (taxid: 9913)

>sp|P53093|YIP4_YEAST Protein YIP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIP4 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 86  SGGSRPNIASTGFGS-PPNTLTEPVWDTVKRDLSRIVSNLKLVVFPN------PYREDPG 138
           SGG   NI  T   S    TL E V  T+KRD+  I S LK VV+P+      P  +  G
Sbjct: 24  SGGVADNIGGTMQNSGSRGTLDETVLQTLKRDVVEINSRLKQVVYPHFPSFFSPSDDGIG 83

Query: 139 KALRD----WDLWGPFFFIVFLGLTLS 161
            A  D     DLW P  FI+   L +S
Sbjct: 84  AADNDISANCDLWAPLAFIILYSLFVS 110

May be involved in proper membrane localization of Rab GTPases.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
225446060	282	PREDICTED: protein YIPF6 [Vitis vinifera	0.817	0.666	0.815	3e-61
255585749	177	conserved hypothetical protein [Ricinus	0.691	0.898	0.809	4e-61
224125970	284	predicted protein [Populus trichocarpa]	0.808	0.654	0.803	4e-61
449451761	278	PREDICTED: protein YIPF6-like [Cucumis s	0.808	0.669	0.823	4e-61
224143749	283	predicted protein [Populus trichocarpa]	0.808	0.657	0.796	6e-61
18398861	281	Integral membrane Yip1-like protein [Ara	0.804	0.658	0.786	4e-59
110740688	240	hypothetical protein [Arabidopsis thalia	0.804	0.770	0.786	4e-59
297836756	278	integral membrane Yip1 family protein [A	0.808	0.669	0.787	3e-58
21553537	281	unknown [Arabidopsis thaliana]	0.804	0.658	0.776	9e-58
226491019	274	LOC100284081 [Zea mays] gi|195639364|gb|	0.791	0.664	0.738	1e-57

>gi|225446060|ref|XP_002271751.1| PREDICTED: protein YIPF6 [Vitis vinifera]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 159/195 (81%), Positives = 168/195 (86%), Gaps = 7/195 (3%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           HSDTIPLH SSQSDIDEIENLINAS    PATVLPARPPSPPR A+IPVSS PFIQSNIP
Sbjct: 3   HSDTIPLHPSSQSDIDEIENLINASVQSGPATVLPARPPSPPR-ASIPVSSTPFIQSNIP 61

Query: 61  PPP--PTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLS 118
           PP          V    VPPPLP+++ S  +RP+I ++GFGS  NTLTEPVWDTVKRDLS
Sbjct: 62  PPTYNKPPVVPAVVPAAVPPPLPNTSNSSSTRPSIGASGFGSQANTLTEPVWDTVKRDLS 121

Query: 119 RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAL 178
           RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAL
Sbjct: 122 RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAL 181

Query: 179 LAAGAVILTLNVLLL 193
           LAAGA+ILTLNVLLL
Sbjct: 182 LAAGAIILTLNVLLL 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585749|ref|XP_002533555.1| conserved hypothetical protein [Ricinus communis] gi|223526571|gb|EEF28827.1| conserved hypothetical protein [Ricinus communis]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/168 (80%), Positives = 142/168 (84%), Gaps = 9/168 (5%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           HSDTIPLHASSQSDIDEIENLINAS    PATVLPARPPSPPR   IPVSS+PFIQSN+P
Sbjct: 3   HSDTIPLHASSQSDIDEIENLINASVQSGPATVLPARPPSPPR---IPVSSSPFIQSNLP 59

Query: 61  PPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRI 120
           PP PTS          PPP P+S  S GS  NI ++GFGS PNTLTEPVWDTVKRDLSRI
Sbjct: 60  PPRPTSQKPPSVPAAPPPPPPASNNSHGS--NIGASGFGSAPNTLTEPVWDTVKRDLSRI 117

Query: 121 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 168
           VSNLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK
Sbjct: 118 VSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKK 165

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125970|ref|XP_002329629.1| predicted protein [Populus trichocarpa] gi|222870510|gb|EEF07641.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 159/198 (80%), Positives = 168/198 (84%), Gaps = 12/198 (6%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           +SDTIPLHASSQSDIDEIENLIN+S    P+TVLPARPPSPPR   IPVSS+PFIQSN+P
Sbjct: 4   NSDTIPLHASSQSDIDEIENLINSSIQSSPSTVLPARPPSPPR---IPVSSSPFIQSNLP 60

Query: 61  PPPPTSSN---QKVPSVPVPPPLPSSTISGGSRP--NIASTGFGSPPNTLTEPVWDTVKR 115
           PPP  +     QK PS     PLP    S G+    NIA+TGFGS PNTLTEPVWDT+KR
Sbjct: 61  PPPAQAQLPTLQKPPSAVPSAPLPPLPPSTGNSAGGNIAATGFGSLPNTLTEPVWDTIKR 120

Query: 116 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVA 175
           DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVA
Sbjct: 121 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVA 180

Query: 176 FALLAAGAVILTLNVLLL 193
           FALLAAGAVILTLNVLLL
Sbjct: 181 FALLAAGAVILTLNVLLL 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451761|ref|XP_004143629.1| PREDICTED: protein YIPF6-like [Cucumis sativus] gi|449520002|ref|XP_004167023.1| PREDICTED: protein YIPF6-like [Cucumis sativus]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 159/193 (82%), Positives = 173/193 (89%), Gaps = 7/193 (3%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           HSDTIPLH SSQSDIDEIENLINAS    P+TVLPARPPSPPR A+IPVSS+PF+QSN+P
Sbjct: 3   HSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPR-ASIPVSSSPFLQSNLP 61

Query: 61  PPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRI 120
           P PP S+ QK P+V   PP     +SG  RP+++++GFGSPPNTLTEPVWDTVKRDLSRI
Sbjct: 62  PLPPKSTIQKPPTVFPTPP--PLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRI 119

Query: 121 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA 180
           VSNLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA
Sbjct: 120 VSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA 179

Query: 181 AGAVILTLNVLLL 193
           AGAVILTLNVLLL
Sbjct: 180 AGAVILTLNVLLL 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143749|ref|XP_002325060.1| predicted protein [Populus trichocarpa] gi|118484354|gb|ABK94054.1| unknown [Populus trichocarpa] gi|222866494|gb|EEF03625.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 157/197 (79%), Positives = 167/197 (84%), Gaps = 11/197 (5%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           +SDTIPLHASSQSDIDEIENLIN+S    P+TVLPARPPSPPR   IPVS++PFIQSN+P
Sbjct: 4   NSDTIPLHASSQSDIDEIENLINSSIQSSPSTVLPARPPSPPR---IPVSASPFIQSNLP 60

Query: 61  PPPPTSSN--QKVPSVPVPPPLPSSTISGGSRP--NIASTGFGSPPNTLTEPVWDTVKRD 116
           PP P      QK PS+    PLP    S G+    N ++ GFGSPPNTLTEPVWDTVKRD
Sbjct: 61  PPQPKPQPTIQKPPSIFPSAPLPPLPPSSGNSAGGNFSAAGFGSPPNTLTEPVWDTVKRD 120

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 176
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF
Sbjct: 121 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 180

Query: 177 ALLAAGAVILTLNVLLL 193
           ALLAAGAVILTLNVLLL
Sbjct: 181 ALLAAGAVILTLNVLLL 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398861|ref|NP_565442.1| Integral membrane Yip1-like protein [Arabidopsis thaliana] gi|4185150|gb|AAD08953.1| expressed protein [Arabidopsis thaliana] gi|20197033|gb|AAM14883.1| expressed protein [Arabidopsis thaliana] gi|87116642|gb|ABD19685.1| At2g18840 [Arabidopsis thaliana] gi|330251718|gb|AEC06812.1| Integral membrane Yip1-like protein [Arabidopsis thaliana]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 155/197 (78%), Positives = 166/197 (84%), Gaps = 12/197 (6%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSA----PFIQ 56
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP +IPVSS+    PF+Q
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRP-SIPVSSSSSSSPFMQ 61

Query: 57  SNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRD 116
           SN+PP  P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTVKRD
Sbjct: 62  SNLPPLHPSSSAQKVTHVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVKRD 118

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 176
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF
Sbjct: 119 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 178

Query: 177 ALLAAGAVILTLNVLLL 193
           ALLAAGAVILTLNVLLL
Sbjct: 179 ALLAAGAVILTLNVLLL 195

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740688|dbj|BAE98446.1| hypothetical protein [Arabidopsis thaliana]

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 155/197 (78%), Positives = 166/197 (84%), Gaps = 12/197 (6%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSA----PFIQ 56
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP+ IPVSS+    PF+Q
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPS-IPVSSSSSSSPFMQ 61

Query: 57  SNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRD 116
           SN+PP  P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTVKRD
Sbjct: 62  SNLPPLHPSSSAQKVTHVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVKRD 118

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 176
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF
Sbjct: 119 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 178

Query: 177 ALLAAGAVILTLNVLLL 193
           ALLAAGAVILTLNVLLL
Sbjct: 179 ALLAAGAVILTLNVLLL 195

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836756|ref|XP_002886260.1| integral membrane Yip1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297332100|gb|EFH62519.1| integral membrane Yip1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/193 (78%), Positives = 163/193 (84%), Gaps = 7/193 (3%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP+    SS+PF+QSN+P
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSPFMQSNLP 62

Query: 61  PPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRI 120
           P  P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTVKRDLSRI
Sbjct: 63  PLHPSSSAQKVTPVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVKRDLSRI 119

Query: 121 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA 180
           VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA
Sbjct: 120 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA 179

Query: 181 AGAVILTLNVLLL 193
           AGAVILTLNVLLL
Sbjct: 180 AGAVILTLNVLLL 192

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553537|gb|AAM62630.1| unknown [Arabidopsis thaliana]

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 153/197 (77%), Positives = 164/197 (83%), Gaps = 12/197 (6%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSA----PFIQ 56
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP +IPVSS+    PF+Q
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRP-SIPVSSSSSSSPFMQ 61

Query: 57  SNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRD 116
           SN+P   P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTV RD
Sbjct: 62  SNLPXLHPSSSAQKVTHVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVXRD 118

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 176
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF
Sbjct: 119 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 178

Query: 177 ALLAAGAVILTLNVLLL 193
           ALLAAGAVILTLNVLLL
Sbjct: 179 ALLAAGAVILTLNVLLL 195

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491019|ref|NP_001150451.1| LOC100284081 [Zea mays] gi|195639364|gb|ACG39150.1| yip1 domain family member 6 [Zea mays]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/199 (73%), Positives = 164/199 (82%), Gaps = 17/199 (8%)

Query: 1   MSNPHSDTIPLH-ASSQSDIDEIENLINA--SPATVLPARPPSPPRPATIPVSSAPFIQS 57
           MS+ H DTIPLH +S+QSD+DEIE+LI+A  SPATVLPARPPSP R A+IPVSS+P    
Sbjct: 1   MSHNHGDTIPLHPSSAQSDMDEIESLIHAAPSPATVLPARPPSPTR-ASIPVSSSP---- 55

Query: 58  NIPPPPPTSSNQKVPSVPV---PPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVK 114
             P P PT       S+P+   P P+P+S     S P I + GFGSPPNTLTEPVWDT+K
Sbjct: 56  -APAPVPTKPPFPAASIPISVSPVPVPASV----SVP-IGADGFGSPPNTLTEPVWDTIK 109

Query: 115 RDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAV 174
           RDL+RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAV
Sbjct: 110 RDLARIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAV 169

Query: 175 AFALLAAGAVILTLNVLLL 193
           AFA+LAAGA+ILTLNVLLL
Sbjct: 170 AFAVLAAGAIILTLNVLLL 188

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2128926	280	AT4G30260 "AT4G30260" [Arabido	0.721	0.592	0.603	5.4e-47
TAIR|locus:2044455	281	AT2G18840 "AT2G18840" [Arabido	0.7	0.572	0.625	3e-46
WB|WBGene00012208	240	W02D9.2 [Caenorhabditis elegan	0.278	0.266	0.447	5.4e-10
UNIPROTKB|G4N4V5	317	MGG_06025 "Yip1 domain-contain	0.139	0.100	0.529	2.4e-09
DICTYBASE|DDB_G0282825	182	yipf6 "Yip1 domain-containing	0.282	0.357	0.441	3.6e-09
FB|FBgn0031600	224	CG3652 [Drosophila melanogaste	0.321	0.330	0.354	5.2e-08
UNIPROTKB|E1BZJ1	234	YIPF6 "Uncharacterized protein	0.278	0.273	0.382	5.6e-06
ZFIN|ZDB-GENE-040625-76	240	yipf6 "Yip1 domain family, mem	0.234	0.225	0.431	3.4e-05
ASPGD|ASPL0000003463	302	AN5926 [Emericella nidulans (t	0.1	0.076	0.565	3.6e-05
UNIPROTKB|E2R1J1	236	YIPF6 "Uncharacterized protein	0.252	0.245	0.403	0.00028

TAIR|locus:2128926 AT4G30260 "AT4G30260" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 102/169 (60%), Positives = 114/169 (67%)

Query:     5 HSDTIPLHASSQSDIDEIENLINASXXXXXXXXXXX---XXXXXXXXXXSAPFIQSNIXX 61
             H+DTIPL+ SSQSDIDEIEN++N S                        S+PF+QSN+  
Sbjct:     3 HNDTIPLYQSSQSDIDEIENMMNDSFQSGPGTVLPARPPSPIRPSIPVSSSPFVQSNLPP 62

Query:    62 XXXTSSNQKXXXXXXXXXXXXXTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIV 121
                +SS+               +       +I  +GFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct:    63 LPPSSSSSTQKVMPVPAPPPLPSAGNEGNKSIGGSGFGSPPNTLTEPVWDTVKRDLSRIV 122

Query:   122 SNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSE 170
             SNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSE
Sbjct:   123 SNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSE 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2044455 AT2G18840 "AT2G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 107/171 (62%), Positives = 113/171 (66%)

Query:     7 DTIPLHASSQSDIDEIENLINASXXXXXXXXXXXX-------XXXXXXXXXSAPFIQSNI 59
             DT+PLH SSQSDIDEIENLIN S                            S+PF+QSN+
Sbjct:     5 DTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSSSSPFMQSNL 64

Query:    60 XXXXXTSSNQKXXXXXXXXXXXXXTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSR 119
                  +SS QK              +S  S    AS  FGSPPNTLTEPVWDTVKRDLSR
Sbjct:    65 PPLHPSSSAQKVTHVPVPPPLPA--VSNSSNFQGASA-FGSPPNTLTEPVWDTVKRDLSR 121

Query:   120 IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSE 170
             IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSE
Sbjct:   122 IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSE 172

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

WB|WBGene00012208 W02D9.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 144 (55.7 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 30/67 (44%), Positives = 39/67 (58%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
             +TL EPVWDTVKRD+  + +    VV P+    D  + LRDWDLWGP F  V L L L  
Sbjct:    64 DTLEEPVWDTVKRDVLTVGAKFTHVVLPHG---DKQQLLRDWDLWGPLFICVGLALLLQH 120

Query:   163 SASVKKS 169
             +   + +
Sbjct:   121 NGGTESA 127

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|G4N4V5 MGG_06025 "Yip1 domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 96 (38.9 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query:   137 PGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSE 170
             PG  LRDWDLWGP  F + L L LS++AS  + +
Sbjct:   173 PG--LRDWDLWGPLIFCLLLSLLLSFNASASQKD 204

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

DICTYBASE|DDB_G0282825 yipf6 "Yip1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 30/68 (44%), Positives = 38/68 (55%)

Query:   102 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLS 161
             PNTL EPV  T+ RDL  I   L  V+ P   R +    LRDWDLWGP    + + + LS
Sbjct:     7 PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 63

Query:   162 WSASVKKS 169
              SA  +K+
Sbjct:    64 ISAEEQKA 71

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0031600 CG3652 [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 28/79 (35%), Positives = 41/79 (51%)

Query:    88 GSRPNIASTGFGSPP-NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDL 146
             G R   A++  G P  NTL EP+ +TV RD+  +      V++P    ++    LRDWDL
Sbjct:    25 GKRTTTATSASGVPEYNTLDEPIRETVLRDIRAVGIKFYHVLYP----KEKSSLLRDWDL 80

Query:   147 WGPFFFIVFLGLTLSWSAS 165
             WGP     F+   L  S++
Sbjct:    81 WGPLVLCTFMATILQGSST 99

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BZJ1 YIPF6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 26/68 (38%), Positives = 35/68 (51%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
             +TL EPV DT+ RDL  +      V++P    +     LRDWDLWGP    V L L L  
Sbjct:    50 STLDEPVRDTILRDLKAVGKKFVHVMYP----KKSSALLRDWDLWGPLVLCVSLALMLQG 105

Query:   163 SASVKKSE 170
              ++  K +
Sbjct:   106 GSADSKED 113

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

ZFIN|ZDB-GENE-040625-76 yipf6 "Yip1 domain family, member 6" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 25/58 (43%), Positives = 31/58 (53%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTL 160
             +TL EPV DT+ RDL  +      V++P    +     LRDWDLWGP    V L L L
Sbjct:    55 STLDEPVKDTILRDLRAVGQKFVHVMYP----KKSSALLRDWDLWGPLLLCVTLALML 108

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ASPGD|ASPL0000003463 AN5926 [Emericella nidulans (taxid:162425)]

 Score = 79 (32.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query:   139 KALRDWDLWGPFFFIVFLGLTLS 161
             + LRDWDLWGP  F + L + LS
Sbjct:   162 EGLRDWDLWGPLIFCLLLSMFLS 184

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|E2R1J1 YIPF6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 105 (42.0 bits), Expect = 0.00028, P = 0.00028
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
             +TL E V +T+ RDL  +      V++P   R+     LRDWDLWGP    V L L L  
Sbjct:    52 STLNESVQNTIMRDLKAVGKKFMHVLYP---RKS-NTLLRDWDLWGPLILCVTLALMLQR 107

Query:   163 SA 164
             S+
Sbjct:   108 SS 109

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031371001 SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (282 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
COG5080	227	COG5080, YIP1, Rab GTPase interacting factor, Golg	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001

>gnl|CDD|227412 COG5080, YIP1, Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 37/159 (23%), Positives = 54/159 (33%), Gaps = 27/159 (16%)

Query: 79  PLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPN------- 131
           P      SGGS         G  P  L E +  T  R +      L   +  N       
Sbjct: 17  PDAPFAASGGSADFEGDQNLGPDP-LLDETLLATSTRGVYPGDPPLLEELGINFGHIKSK 75

Query: 132 ------PYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVI 185
                 P+       L D DLWGP  FI+   L LS +       ++ ++          
Sbjct: 76  SDDVLGPFDNKAFDILADCDLWGPLIFILLYSLFLSLAGKSHFGYIYGISL--------- 126

Query: 186 LTLNVLLLVILSLSTAPPPF--SVSVVGMALSLLPICFL 222
                L L++  L      F  ++S++G   SLLP+ F 
Sbjct: 127 FGTLSLHLLLRLLGHKNISFFSTISILGY--SLLPLVFN 163

Length = 227

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 20/62 (32%), Positives = 25/62 (40%)

Query: 28   ASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISG 87
            +  +   P  P  PP     P ++ P   S   P PP +S Q     P P P P S   G
Sbjct: 2794 SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853

Query: 88   GS 89
            GS
Sbjct: 2854 GS 2855

Length = 3151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
KOG2946	234	consensus Uncharacterized conserved protein [Funct	100.0
KOG3103	249	consensus Rab GTPase interacting factor, Golgi mem	100.0
COG5080	227	YIP1 Rab GTPase interacting factor, Golgi membrane	100.0
KOG3114	290	consensus Uncharacterized conserved protein [Funct	98.27
PF04893	172	Yip1: Yip1 domain; InterPro: IPR006977 This entry	97.8
PF03878	240	YIF1: YIF1; InterPro: IPR005578 This family includ	91.48
KOG3094	284	consensus Predicted membrane protein [Function unk	85.42
COG5197	284	Predicted membrane protein [Function unknown]	82.07

>KOG2946 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.3e-45  Score=322.66  Aligned_cols=170  Identities=46%  Similarity=0.651  Sum_probs=144.5

Q ss_pred             cCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHH
Q 026980           33 VLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDT  112 (230)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~dTLDEPLlET  112 (230)
                      +.++|+++++| .|+++++    +.+..|-.+.   .. ..++.++|-..++|+|.     +.....+++||||||||||
T Consensus         1 ~~~~~~~s~~~-~s~~~~s----~t~~ep~~~s---~~-~~~~~~~p~~~a~n~g~-----g~~~~~~e~dTldePv~~t   66 (234)
T KOG2946|consen    1 VLDPRPHSPER-PSIEMES----QTMLEPVFAS---PS-VEAPASAPGNSAGNSGF-----GWLLEVNEEDTLDEPVLET   66 (234)
T ss_pred             CCCCCCCCCCC-CCcCccC----cccCCccccC---cc-ccCCCCCCcccccccCc-----ccccccCCCCcccchHHHH
Confidence            46789999999 9999987    2333321111   11 22345556667776664     4456788999999999999


Q ss_pred             HHhhHHHHHHhccceeccCCCCCCCCCcccccchhhHHHHHHHHHHHHhhccCCCCCeeEeeehhHHHHHHHHHHHHHHh
Q 026980          113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLL  192 (230)
Q Consensus       113 LgRD~~~I~~Kl~~VL~P~~~~~~~~~~LrDwDLWGPLlFcLlLal~Lslsgk~~~~~vFg~If~i~~lGaivltLN~~L  192 (230)
                      |+||+.+|+.|+++||+|+.+++|+++.+|||||||||+||+.+|++|++++..+...+|+.+|++.|+|++++|+|+||
T Consensus        67 lkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~~vFs~vf~i~wfG~~vvtln~kL  146 (234)
T KOG2946|consen   67 LKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSASVFAVVFAILWFGAVVVTLNIKL  146 (234)
T ss_pred             HHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998889999999999999999999999999999987666689999999999999999999999


Q ss_pred             hccc-cccCCCCCceEEEehhhhhHHHHHH
Q 026980          193 LVIL-SLSTAPPPFSVSVVGMALSLLPICF  221 (230)
Q Consensus       193 LGG~-s~~~~~~~qsvSVLGYCLLPlvila  221 (230)
                      |||+ +|+     |++||+||||+|+++.|
T Consensus       147 LGgnIs~f-----Qsl~IlGYCLfPl~v~a  171 (234)
T KOG2946|consen  147 LGGNISFF-----QSLCILGYCLFPLVVAA  171 (234)
T ss_pred             hCCceeEE-----eehhhhhhcccHHHHHH
Confidence            9999 887     99999999999999987

>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-35  Score=263.35  Aligned_cols=113  Identities=19%  Similarity=0.304  Sum_probs=102.6

Q ss_pred             CcchHHHHHhhHHHHHHhccceeccCCCCCCCCCcccccchhhHHHHHHHHHHHHhhccCCCCCeeEeeehhHHHHHHHH
Q 026980          106 TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVI  185 (230)
Q Consensus       106 DEPLlETLgRD~~~I~~Kl~~VL~P~~~~~~~~~~LrDwDLWGPLlFcLlLal~Lslsgk~~~~~vFg~If~i~~lGaiv  185 (230)
                      |||+|||||||++|||+|+++||+|++  ..+.++++|.||||||+||++|+++|+++|    |.||||||+++.+|++.
T Consensus        81 EpPLLEELgInf~hI~~KT~~VLnP~r--~~~q~i~~d~DlaGPlvf~L~f~~flLl~g----Ki~FgyIygi~~~gsl~  154 (249)
T KOG3103|consen   81 EPPLLEELGINFDHIKQKTRAVLNPFR--SADQSIMKDTDLAGPLVFCLLFGLFLLLAG----KIHFGYIYGISLLGSLS  154 (249)
T ss_pred             CCchHHHhCCCHHHHHHHHhheecccc--cCceEEecCcccccchHHHHHHHHHHHhcC----ceEEEEEeeeHHHHHHH
Confidence            559999999999999999999999985  456889999999999999999999999998    58999999999999999


Q ss_pred             HHHHHHhhccccccCCCCCceEEEehhhhhHHHHHHHHHHhh
Q 026980          186 LTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAAS  227 (230)
Q Consensus       186 ltLN~~LLGG~s~~~~~~~qsvSVLGYCLLPlvilall~~~~  227 (230)
                      +++.+++|+-+.+.|.   +|+|||||||||||++|.++++.
T Consensus       155 iy~L~nlm~~~nv~f~---~~aSVlGYcLLPlvvlS~v~i~~  193 (249)
T KOG3103|consen  155 IYFLLNLMSNKNVSFG---CVASVLGYCLLPLVVLSFVNIFV  193 (249)
T ss_pred             HHHHHHHHhhcCccee---eehHHHHHHHHHHHHHHHHHHHH
Confidence            9999999994433333   99999999999999999999863

>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.5e-33  Score=245.35  Aligned_cols=116  Identities=25%  Similarity=0.337  Sum_probs=105.8

Q ss_pred             CCCCcchHHHHHhhHHHHHHhccceeccCCCCCCCCCcccccchhhHHHHHHHHHHHHhhccCCCCCeeEeeehhHHHHH
Q 026980          103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAG  182 (230)
Q Consensus       103 dTLDEPLlETLgRD~~~I~~Kl~~VL~P~~~~~~~~~~LrDwDLWGPLlFcLlLal~Lslsgk~~~~~vFg~If~i~~lG  182 (230)
                      ...|||++|||++||.+|++|+..|+.|++  ..+.++++||||||||+||++|+++|++++|    .||||||++.|+|
T Consensus        55 ~p~d~pLleel~i~F~~i~~ks~~vl~p~~--~~~~~i~~d~DL~gPliF~lL~sLfLsla~~----shFgyiy~islfg  128 (227)
T COG5080          55 YPGDPPLLEELGINFGHIKSKSDDVLGPFD--NKAFDILADCDLWGPLIFILLYSLFLSLAGK----SHFGYIYGISLFG  128 (227)
T ss_pred             CCCCccHHHHhcccccccccccceeeeccc--ccchhhhhcccccccHHHHHHHHHHHHhccc----ceeehhhHHHHHH
Confidence            556999999999999999999999999985  3457899999999999999999999999974    7999999999999


Q ss_pred             HHHHHHHHHhhccccccCCCCCceEEEehhhhhHHHHHHHHHHhh
Q 026980          183 AVILTLNVLLLVILSLSTAPPPFSVSVVGMALSLLPICFLLDAAS  227 (230)
Q Consensus       183 aivltLN~~LLGG~s~~~~~~~qsvSVLGYCLLPlvilall~~~~  227 (230)
                      .++++++.||||-+.++|+   +|+||||||++|+|+.|+++++.
T Consensus       129 ~lsl~~~lrLl~~~ni~f~---~~~SIlGYs~lPlv~~slv~~i~  170 (227)
T COG5080         129 TLSLHLLLRLLGHKNISFF---STISILGYSLLPLVFNSLVSIIL  170 (227)
T ss_pred             HHHHHHHHHHhccCceeee---ehhHHhhhhHHHHHHHHHHHHHH
Confidence            9999999999996644443   99999999999999999999874

>KOG3114 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=1e-06  Score=81.26  Aligned_cols=108  Identities=21%  Similarity=0.290  Sum_probs=68.7

Q ss_pred             HHhhHHHHHHhccceeccCCCCCCCCCcccccchhhHHHHHHHHHHHHhhccC--------CCCCeeEeeehhHHHHHHH
Q 026980          113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSAS--------VKKSEVFAVAFALLAAGAV  184 (230)
Q Consensus       113 LgRD~~~I~~Kl~~VL~P~~~~~~~~~~LrDwDLWGPLlFcLlLal~Lslsgk--------~~~~~vFg~If~i~~lGai  184 (230)
                      +..|..++.+|++..|.|+++  ...+.=.+.|||||+++|.++-+.|.+++.        ..++...++-|..+..++.
T Consensus        84 FdVDt~qV~~Rl~~SliP~~~--~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~f~~v~saa~  161 (290)
T KOG3114|consen   84 FDVDTAQVRKRLKESLIPRNY--VRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTAYGYDFGLVTSAAT  161 (290)
T ss_pred             cCCCHHHHHHHHHHhcCCccc--cccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhccccceeeecccchHHHHHH
Confidence            467999999999999999432  122222457999999999999999988762        1233456665555444444


Q ss_pred             HHH--H-H--------HHhhc-cc---cccCCCCCceEEEehhhhhHHHHHHHHHH
Q 026980          185 ILT--L-N--------VLLLV-IL---SLSTAPPPFSVSVVGMALSLLPICFLLDA  225 (230)
Q Consensus       185 vlt--L-N--------~~LLG-G~---s~~~~~~~qsvSVLGYCLLPlvilall~~  225 (230)
                      +++  + +        ++..| +.   -+.++   .++||.||+++...-+.++.+
T Consensus       162 ~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~---~~~~iygysl~i~ip~~vl~i  214 (290)
T KOG3114|consen  162 LIYGYLTIVPLALWGILSWNGYSLLLHCYVLL---ELVCIYGYSLFIFIPLLVLWI  214 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccceehh---hHHHHHhhHHHHHHHHHHHHh
Confidence            333  1 1        11122 11   12122   688999999987776555544

>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain

Probab=97.80  E-value=1.5e-05  Score=63.33  Aligned_cols=83  Identities=23%  Similarity=0.127  Sum_probs=59.5

Q ss_pred             cccccchhhHHHHHHHHHHHHhhccCC-------------CCCeeEeee-------hhHHHHHHHHHHHHHHhhccc-cc
Q 026980          140 ALRDWDLWGPFFFIVFLGLTLSWSASV-------------KKSEVFAVA-------FALLAAGAVILTLNVLLLVIL-SL  198 (230)
Q Consensus       140 ~LrDwDLWGPLlFcLlLal~Lslsgk~-------------~~~~vFg~I-------f~i~~lGaivltLN~~LLGG~-s~  198 (230)
                      ..+.||++++++.++.+...+......             +....++.+       ....++.+.++++..|++||+ ++
T Consensus        18 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~gg~~~~   97 (172)
T PF04893_consen   18 ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILIGWFILALILHLIAKLFGGKGSF   97 (172)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            446899999999998888877666210             111212221       133455566677788899998 88


Q ss_pred             cCCCCCceEEEehhhhhHHHHHHHHHHhh
Q 026980          199 STAPPPFSVSVVGMALSLLPICFLLDAAS  227 (230)
Q Consensus       199 ~~~~~~qsvSVLGYCLLPlvilall~~~~  227 (230)
                      .     ++.|+.|||++|+++..++.++.
T Consensus        98 ~-----~~~~~~~ya~~P~~~~~~~~~~~  121 (172)
T PF04893_consen   98 K-----ETFSVVGYALIPLLLGSLISIIL  121 (172)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            7     99999999999999999888753

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane

>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins

Probab=91.48  E-value=0.19  Score=45.53  Aligned_cols=109  Identities=24%  Similarity=0.265  Sum_probs=71.0

Q ss_pred             hhHHHHHHhccceeccCCCCC-----------CCCCcccccchhhHHHHHHHHHHHHhhc-c-CCCCC-eeEe----eeh
Q 026980          115 RDLSRIVSNLKLVVFPNPYRE-----------DPGKALRDWDLWGPFFFIVFLGLTLSWS-A-SVKKS-EVFA----VAF  176 (230)
Q Consensus       115 RD~~~I~~Kl~~VL~P~~~~~-----------~~~~~LrDwDLWGPLlFcLlLal~Lsls-g-k~~~~-~vFg----~If  176 (230)
                      .|=.=|.+|++.+++|+..+.           ...+.+.-.||-=|+.-+++|-++-.+. | +.+++ ++++    ..+
T Consensus        45 V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~~~s~al  124 (240)
T PF03878_consen   45 VDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLILGLQGRFSPELLGIQASSAL  124 (240)
T ss_pred             CCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            455668999999999985321           0134455689999999998887765432 2 22233 3333    344


Q ss_pred             hHHHHHHHHHHHHHHhhccc-cccCCCCCceEEEehhhhhHHHHHHHHHHh
Q 026980          177 ALLAAGAVILTLNVLLLVIL-SLSTAPPPFSVSVVGMALSLLPICFLLDAA  226 (230)
Q Consensus       177 ~i~~lGaivltLN~~LLGG~-s~~~~~~~qsvSVLGYCLLPlvilall~~~  226 (230)
                      +++.+=.+++.+..-+++.. +..+.   -.+|..||-..+++++-++..+
T Consensus       125 ~~~~lEv~i~k~~~y~l~~~~~~~~l---Dlvay~GYKfv~ii~~~l~~~l  172 (240)
T PF03878_consen  125 VWWFLEVLIIKLGLYLLNISSSLPIL---DLVAYSGYKFVGIILTLLASLL  172 (240)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCHH---HHHHhhcchHHHHHHHHHHHHH
Confidence            44444455666777777773 33322   6789999999999887777654

It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.

>KOG3094 consensus Predicted membrane protein [Function unknown]

Probab=85.42  E-value=1.7  Score=40.48  Aligned_cols=107  Identities=21%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             HHHHHHhccceeccCCCCC----C-------CCCcccccchhhHHHHHHHHHHHHhhc-c-CCCCC-eeEeeehhHHHHH
Q 026980          117 LSRIVSNLKLVVFPNPYRE----D-------PGKALRDWDLWGPFFFIVFLGLTLSWS-A-SVKKS-EVFAVAFALLAAG  182 (230)
Q Consensus       117 ~~~I~~Kl~~VL~P~~~~~----~-------~~~~LrDwDLWGPLlFcLlLal~Lsls-g-k~~~~-~vFg~If~i~~lG  182 (230)
                      =.=+.+|++.|++|+..++    .       ..+.+.-.||.=|+.-.++|-++.-+. | +.+++ +.+++.+.-..++
T Consensus        94 n~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~Lg~~~s~al~~  173 (284)
T KOG3094|consen   94 NAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEALGILASKALAW  173 (284)
T ss_pred             hHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence            3457899999999985321    1       123566679999998777776654322 1 22344 6777766544444


Q ss_pred             HHH---HHH-HHHhhccc-cccCCCCCceEEEehhhhhHHHHHHHHHHh
Q 026980          183 AVI---LTL-NVLLLVIL-SLSTAPPPFSVSVVGMALSLLPICFLLDAA  226 (230)
Q Consensus       183 aiv---ltL-N~~LLGG~-s~~~~~~~qsvSVLGYCLLPlvilall~~~  226 (230)
                      .++   ++. -.-+++-+ ++.+.   ..+|--||-+..|+++.+...+
T Consensus       174 v~le~l~l~l~lY~l~vs~~ls~l---dllAysGYKfv~liL~~L~k~~  219 (284)
T KOG3094|consen  174 VILEVLLLKLGLYLLNVSSSLSTL---DLLAYSGYKFVGLILAQLTKLL  219 (284)
T ss_pred             HHHHHHHHHHHHheecccCCcchh---HhhhhcccchHHHHHHHHhhhe
Confidence            333   222 22223332 34333   7788899999999988777654

>COG5197 Predicted membrane protein [Function unknown]

Probab=82.07  E-value=3.7  Score=37.83  Aligned_cols=104  Identities=17%  Similarity=0.123  Sum_probs=68.6

Q ss_pred             hhHHHHHHhccceeccCCCCC----CC-------CCcccccchhhHHHHHHHHHHHHhhc-c-CCCCC-eeEeeehhHHH
Q 026980          115 RDLSRIVSNLKLVVFPNPYRE----DP-------GKALRDWDLWGPFFFIVFLGLTLSWS-A-SVKKS-EVFAVAFALLA  180 (230)
Q Consensus       115 RD~~~I~~Kl~~VL~P~~~~~----~~-------~~~LrDwDLWGPLlFcLlLal~Lsls-g-k~~~~-~vFg~If~i~~  180 (230)
                      .|=+-+.+|++.+++|+.+++    .+       .+.+...|+.=|+.=.+++-+++..- | |..+. +.|++.+.-.+
T Consensus        89 V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~GL~g~F~PE~lg~~~s~~~  168 (284)
T COG5197          89 VSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTL  168 (284)
T ss_pred             echHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhhcccCCCHHHhhHHHHHHH
Confidence            455668899999999986421    11       23467789999999888887765432 2 33343 67777766555


Q ss_pred             HHHHHHHHHHHhhcc------c--cccCCCCCceEEEehhhhhHHHHHHHHH
Q 026980          181 AGAVILTLNVLLLVI------L--SLSTAPPPFSVSVVGMALSLLPICFLLD  224 (230)
Q Consensus       181 lGaivltLN~~LLGG------~--s~~~~~~~qsvSVLGYCLLPlvilall~  224 (230)
                      +--++-.+..++ |+      +  ++-     ..+|-.||=+.|++++.+..
T Consensus       169 a~v~v~~l~trl-g~Yll~~s~~~~~l-----dllaysGYKfV~liL~qL~k  214 (284)
T COG5197         169 AFVCVDLLITRL-GLYLLIDSKIPSFL-----DLLAYSGYKFVPLILAQLLK  214 (284)
T ss_pred             HHHHHHHHHHHh-ceEEEeecccchhh-----hhhhhcccccHHHHHHHHhh
Confidence            444444444444 44      1  221     56788999999999988876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00