Citrus Sinensis ID: 026981

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQKATSAGAGGSGSYLQLRSRRLEKPAALVNETSGRRRRRRKENSRARERSRGKKNVDEVEEEKETDDVAATAVEVEEEEENGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP
Secondary Structure (PSIPRED)
ccHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
cccHHEEcccccccEEEEEccccccccHHHHHHHHHHHHHccccccccccEEEHHcHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccc
Coil and Loop (DISEMBL)
MGKYMRKAKTAAGEVAVMEvtqssplgvrTRAKTLALQKatsagaggsgsyLQLRSRRlekpaalvnetsgrrrrrrKENSRArersrgkknvdeveeeketdDVAATAVEVEEeeengnknldieASFGENALESEarergtrestpcslirdpeiirtpgssnrptssmqnREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKynydpvndkplpghfkwqkvdp
Flexible Loop (DISEMBL)
mgkymrkaktaagevavmevtqssplgvrTRAKTLALqkatsagaggsgsylqlrsrrlekpaalvnetsgrrrrrrkensrarersrgkknvdeveeeketddvaataveveeeeengnknldieasFGENALEsearergtrestpcslirdpeiirtpgssnrptssmqNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNydpvndkplpghfkwqkvdp
Low Complexity Region (SEG)
MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQKatsagaggsgsYLQLRSRRLEKPAALVNetsgrrrrrrkensrarersrGkknvdeveeeketddvaataveveeeeeNGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP
Disordered region (IsUnstruct)
**************************************************************************************************************************************************************************************LI********************FIEKYNY*******************
Disordered Region (DISOPRED)
**************VAVMEVTQSSPLGVRTR**************************************************************************************************************************************************************MDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP
Disordered Region (DISEMBL)
*************EVAVMEVTQSSPLGVRTRAKTLALQK************LQLRSRRLEKPAALVN**************************************AATA*********GNKNLDIEASFGENAL**************CSLIRDPEIIRTPG*************AQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP
Disordered Region (DISPRO)
**KYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQKATS*****SGSYL**RSRRLEKPAAL*********************************************************************************************************************LIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQKATSAGAGGSGSYLQLRSRRLEKPAALVNETSGRRRRRRKENSRARERSRGKKNVDEVEEEKETDDVAATAVEVEEEEENGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q9FKB5	222	Cyclin-dependent kinase i	yes	no	0.913	0.945	0.421	5e-38
Q8GYJ3	289	Cyclin-dependent kinase i	no	no	0.991	0.788	0.359	3e-33
Q283L0	221	Cyclin-dependent kinase i	yes	no	0.886	0.923	0.4	2e-32
Q7XDH8	194	Cyclin-dependent kinase i	no	no	0.826	0.979	0.390	7e-26
Q9LRY0	189	Cyclin-dependent kinase i	no	no	0.769	0.936	0.322	4e-17
Q94CL9	195	Cyclin-dependent kinase i	no	no	0.2	0.235	0.5	2e-08
Q0WNX9	196	Cyclin-dependent kinase i	no	no	0.191	0.224	0.478	1e-07
Q67J15	86	Cyclin-dependent kinase i	no	no	0.2	0.534	0.413	0.0003

>sp|Q9FKB5|KRP3_ARATH Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/242 (42%), Positives = 144/242 (59%), Gaps = 32/242 (13%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQS---SPLGVRTRA-KTLALQKATSAGAGG-----SGSY 51
           MGKYM+K+K   G+++VMEV+++   SP GVRTRA KTLAL++  S+ A       S  Y
Sbjct: 1   MGKYMKKSKIT-GDISVMEVSKATAPSP-GVRTRAAKTLALKRLNSSAADSALPNDSSCY 58

Query: 52  LQLRSRRLEKPAALVNETSGRRRRR---RKENSRARERSRGKKNVDEVEEEKETDDVAAT 108
           LQLRSRRLEKP++L+      R  R   ++  SR+R        VD V         +  
Sbjct: 59  LQLRSRRLEKPSSLIEPKQPPRVHRSGIKESGSRSR--------VDSVN--------SVP 102

Query: 109 AVEVEEEEENGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPT 168
             +   E+E  +  + ++ S GEN+L  E+R   TRESTPC+ + D EI+ TPGSS R +
Sbjct: 103 VAQSSNEDECFDNFVSVQVSCGENSLGFESRH-STRESTPCNFVEDMEIMVTPGSSTR-S 160

Query: 169 SSMQNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKV 228
                +E      ++IPT  EM++FFA  E++QQR F+EKYN+D VND PL G ++W +V
Sbjct: 161 MCRATKEYTREQDNVIPTTSEMEEFFAYAEQQQQRLFMEKYNFDIVNDIPLSGRYEWVQV 220

Query: 229 DP 230
            P
Sbjct: 221 KP 222

Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. May target specifically CDKA-1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYJ3|KRP4_ARATH Cyclin-dependent kinase inhibitor 4 OS=Arabidopsis thaliana GN=KRP4 PE=1 SV=2

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 147/289 (50%), Gaps = 61/289 (21%)

Query: 1   MGKYMRKAKT----------------AAGEVAVMEVTQSSP---LGVRTRAKTLALQKAT 41
           MGKY+RK+K                     +A+M+V   S    LGV TRAK+LALQ+  
Sbjct: 1   MGKYIRKSKIDGAGAGAGGGGGGGGGGESSIALMDVVSPSSSSSLGVLTRAKSLALQQQQ 60

Query: 42  SAGA--------------------------------GGSGSYLQLRSRRLEKPAALVNET 69
                                                  GSYLQLRSRRL+K   +V   
Sbjct: 61  QRCLLQKPSSPSSLPPTSASPNPPSKQKMKKKQQQMNDCGSYLQLRSRRLQKKPPIVVIR 120

Query: 70  SGRRRRRRKENSRARERSRGKKNVDEVEEEKETDDVAATAVEVEEEEENGNKNLDIEASF 129
           S +RR++++ N         + N+D +  +    D  + +V V  ++++    ++ + +F
Sbjct: 121 STKRRKQQRRNETCGRNPNPRSNLDSIRGDGSRSDSVSESV-VFGKDKDLISEINKDPTF 179

Query: 130 GENALE-----SEARERGTRESTPCSLIRDPEIIRTPGSS---NRPTSSMQNREAQIS-A 180
           G+N  +     +++  R TRESTPCSLIR PEI+ TPGSS   N   S    RE  +S +
Sbjct: 180 GQNFFDLEEEHTQSFNRTTRESTPCSLIRRPEIMTTPGSSTKLNICVSESNQREDSLSRS 239

Query: 181 CSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 229
               PT  EMD+FF+  EEEQQ+QFIEKYN+DPVN++PLPG F+W KVD
Sbjct: 240 HRRRPTTPEMDEFFSGAEEEQQKQFIEKYNFDPVNEQPLPGRFEWTKVD 288

Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. May target specifically CDKA-1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q283L0|KRP5_ORYSJ Cyclin-dependent kinase inhibitor 5 OS=Oryza sativa subsp. japonica GN=KRP5 PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 136/245 (55%), Gaps = 41/245 (16%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQKATSA------GAGGSGS---- 50
           MGKYMRK K  +GEVAVMEV   + LGVRTR++TLALQ+ TS+      G G  G+    
Sbjct: 1   MGKYMRKGK-VSGEVAVMEV-GGALLGVRTRSRTLALQRTTSSQKPPEKGEGDPGAGAGA 58

Query: 51  ---YLQLRSRRLEKPAALVNETSGRRRRRRKENSRARERSRGKKNVDEVEEEKETDDVAA 107
              YL+LRSRRLEKP             + KE +R    +           +   +  A 
Sbjct: 59  GAEYLELRSRRLEKPPPHTPPA------KEKETARRASAAAAAAVRMPAAPQAAEEFEAE 112

Query: 108 TAVEVEEEEENGNKNLDIEASFGENALE--SEARERGTRESTPCSLIRDPEIIRTPGSSN 165
             V                 SFG+N L+   +A ER TRE+TPCSLIR  E+I TPGS+ 
Sbjct: 113 VEV-----------------SFGDNVLDLDGDAMERSTRETTPCSLIRSSEMISTPGSTT 155

Query: 166 RPTSSMQNRE-AQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFK 224
           +  +S+ +R   + S C  +P++ EM++FFA  E++Q + F E+YN+ PVND PLPG ++
Sbjct: 156 KTNTSISSRRRMETSVCRYVPSSLEMEEFFAAAEQQQHQAFRERYNFCPVNDCPLPGRYE 215

Query: 225 WQKVD 229
           W ++D
Sbjct: 216 WTRLD 220

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XDH8|KRP4_ORYSJ Cyclin-dependent kinase inhibitor 4 OS=Oryza sativa subsp. japonica GN=KRP4 PE=2 SV=2

 Score =  117 bits (293), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/233 (39%), Positives = 120/233 (51%), Gaps = 43/233 (18%)

Query: 1   MGKYMRKAKTA-AGEVAVMEVTQSS--PLGVRTRAKTLALQKATSAGAGGSGSYLQLRSR 57
           MGKYMRKAK   +GEV    V + +  PLGVRTRA++LALQK         G YL+LRSR
Sbjct: 1   MGKYMRKAKVVVSGEVVAAAVMELAAAPLGVRTRARSLALQKRQ------GGEYLELRSR 54

Query: 58  RLEKPAALVNETSGRRRRRRKENSRARERSRGKKNVDEVEEEKETDDVAATAVEVEEEEE 117
           RLEK          RR       + A      +  V                        
Sbjct: 55  RLEKLPPPPPPPPRRRATAAAATADATAAESAEAEVS----------------------F 92

Query: 118 NGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREAQ 177
            G   L++E      A+E   RE     +TPCSLIRDP+ I TPGS+ R + S  + + Q
Sbjct: 93  GGENVLELE------AMERNTRE-----TTPCSLIRDPDTISTPGSTTRRSHSSSHCKVQ 141

Query: 178 ISA-CSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 229
                ++IP + E++ FFA  E+ Q++ FI+KYN+DPVND PLPG F+W K+D
Sbjct: 142 TPVRHNIIPASAELEAFFAAEEQRQRQAFIDKYNFDPVNDCPLPGRFEWVKLD 194

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LRY0|KRP5_ARATH Cyclin-dependent kinase inhibitor 5 OS=Arabidopsis thaliana GN=KRP5 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 114/242 (47%), Gaps = 65/242 (26%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRA---KTLALQKATS-AGAGGSGSYLQLRS 56
           MGKY++K+K A G V+V + +    LG RTRA   K LAL +  S +    S +YLQLRS
Sbjct: 1   MGKYIKKSKVA-GAVSVKDKSHPPALGFRTRAAAAKNLALHRLRSHSDEADSFNYLQLRS 59

Query: 57  RRLEKPAALVNETSGRRRRR-------RKENSRARERSRGKKNVDEVEEEKETDDVAATA 109
           RRL K   L N    ++++        + +N RA   S G     ++E +  T++     
Sbjct: 60  RRLVKLPLLTNTRKQQKQQLIPSVNQCQTKNPRA---SSGP--AKKLEPDTTTEEACGDN 114

Query: 110 VEVEEEEEN-GNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPT 168
             +   + N G+K  D         LESE R          S+I D + I++        
Sbjct: 115 ERISRSDCNFGDKGFD---------LESENR----------SMISDSKSIQS-------- 147

Query: 169 SSMQNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKV 228
                               E++ FFA  E++QQR FI+KYN+D V+D PLPG ++W KV
Sbjct: 148 --------------------EIEDFFASAEQQQQRFFIQKYNFDIVSDNPLPGRYEWVKV 187

Query: 229 DP 230
            P
Sbjct: 188 MP 189

Inhibits CYCD2-1/CDKA-1 complex kinase activity without interaction with the complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94CL9|KRP7_ARATH Cyclin-dependent kinase inhibitor 7 OS=Arabidopsis thaliana GN=KRP7 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 185 PTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 230
           PT  E+D FF+  E  +Q++F EKYNYD VND PL G ++W  + P
Sbjct: 150 PTQAELDDFFSAAERYEQKRFTEKYNYDIVNDTPLEGRYQWVSLKP 195

Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. May target specifically CDKA-1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WNX9|KRP6_ARATH Cyclin-dependent kinase inhibitor 6 OS=Arabidopsis thaliana GN=KRP6 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 36/46 (78%), Gaps = 2/46 (4%)

Query: 185 PTAHEMDKFFADTE--EEQQRQFIEKYNYDPVNDKPLPGHFKWQKV 228
           PTA E++  F++ E  +++++QFIEKYN+D VND+PL G +KW ++
Sbjct: 151 PTAAEIEDLFSELESQDDKKKQFIEKYNFDIVNDEPLEGRYKWDRL 196

Binds and inhibits CYCD2-1/CDKA-1 complex kinase activity. Regulates cell division which is crucial for plant growth, development and morphogenesis. May inhibit CDK kinases specifically involved in the G1/S phase transition.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67J15|KRP6_ORYSJ Cyclin-dependent kinase inhibitor 6 OS=Oryza sativa subsp. japonica GN=KRP6 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 185 PTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 230
           P   E++ F A  E    R+F  KYNYD V D P+ G ++W +V P
Sbjct: 41  PPEEEVEAFLAAAESSVARRFAAKYNYDIVKDAPMDGRYEWVRVRP 86

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
56126414	234	cyclin dependent kinase inhibitor [Eupho	0.930	0.914	0.524	2e-52
225433546	263	PREDICTED: cyclin-dependent kinase inhib	0.982	0.859	0.486	2e-48
147766042	252	hypothetical protein VITISV_012042 [Viti	0.986	0.900	0.486	4e-48
359479884	218	PREDICTED: cyclin-dependent kinase inhib	0.926	0.977	0.485	7e-47
306481011	232	kip-related protein [Solanum lycopersicu	0.956	0.948	0.529	1e-46
356576434	224	PREDICTED: cyclin-dependent kinase inhib	0.934	0.959	0.485	6e-45
255554140	266	conserved hypothetical protein [Ricinus	0.930	0.804	0.436	1e-44
374349342	218	cyclin-dependent kinase inhibitor [Perse	0.930	0.981	0.469	1e-43
298205264	203	unnamed protein product [Vitis vinifera]	0.821	0.931	0.483	5e-43
449442373	261	PREDICTED: cyclin-dependent kinase inhib	0.904	0.796	0.448	6e-43

>gi|56126414|gb|AAV76001.1| cyclin dependent kinase inhibitor [Euphorbia esula]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/246 (52%), Positives = 159/246 (64%), Gaps = 32/246 (13%)

Query: 5   MRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQK--------------ATSAGAGGSGS 50
           MRK KT  GEVAVM+++    LGVRTRAKTLALQ+              A     G SG 
Sbjct: 1   MRKVKTT-GEVAVMDLS----LGVRTRAKTLALQRQARLPPPSPPPPPPAHPTPPGSSGG 55

Query: 51  YLQLRSRRLEKPAALVNETSGRRRRRRKENSRARERSRGKKNVD--EVEEEKETDDVAAT 108
           YLQLRSRRL KP  LV+++   +R++  +NS A   +    N+D   +     TD     
Sbjct: 56  YLQLRSRRLVKPPILVHDS---KRQKPGQNSEAHNPN---PNLDAGSIVRVGPTDSPTLG 109

Query: 109 AVEVEEEEENGNK---NLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSN 165
           +   E+E E GNK   +L IEASFGEN L+ E R R +RESTPCSLIRDPE IRTPGS+ 
Sbjct: 110 SRPNEDEFE-GNKESDDLGIEASFGENVLDIEGRGRYSRESTPCSLIRDPETIRTPGSTT 168

Query: 166 RPTSSMQ-NREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFK 224
           RPT+S + NR  Q S    IPTAHEMD+FFA  E EQQRQF+E YN+DPVN+KPLPG ++
Sbjct: 169 RPTNSTEPNRRIQNSTPRHIPTAHEMDQFFAKAELEQQRQFMENYNFDPVNEKPLPGRYE 228

Query: 225 WQKVDP 230
           W+K+DP
Sbjct: 229 WEKLDP 234

Source: Euphorbia esula

Species: Euphorbia esula

Genus: Euphorbia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433546|ref|XP_002268785.1| PREDICTED: cyclin-dependent kinase inhibitor 5 [Vitis vinifera]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/265 (48%), Positives = 160/265 (60%), Gaps = 39/265 (14%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQK------------ATSAGAGGS 48
           MGKYMRKAK A GEVAVMEV+Q   LGVRTRAKTLAL++            +       S
Sbjct: 1   MGKYMRKAK-ARGEVAVMEVSQPC-LGVRTRAKTLALERLQKSRPRPSPPQSPPQQQASS 58

Query: 49  GSYLQLRSRRLEKPAALVNETSGRRRRRRKE------NSRARERSRGKKNVDEVEEEKET 102
            SYLQLRSRRL KP  LV+  S + ++  KE      N + + R+  +  V  V      
Sbjct: 59  SSYLQLRSRRLLKPPILVS-NSKKHKQNLKEVDVENPNPKVKARASSRLRVGSVRCGSVG 117

Query: 103 ----------DDVAATAVEV-----EEE--EENGNKNLDIEASFGENALESEARERGTRE 145
                     D V + AV++     EE+  E+N   +L IEASFGEN L+ EAR+R TRE
Sbjct: 118 SVSLGCLSGEDGVQSPAVDLLKLGKEEQILEDNNANDLGIEASFGENVLDFEARDRSTRE 177

Query: 146 STPCSLIRDPEIIRTPGSSNRP-TSSMQNREAQISACSLIPTAHEMDKFFADTEEEQQRQ 204
           +TPCSLIRDPE IRTPGS+ +P +SS  NR    S    +PT  EMD+FF   EEEQQR 
Sbjct: 178 TTPCSLIRDPETIRTPGSTTKPASSSGINRRMDNSRQGHVPTTQEMDQFFQSAEEEQQRV 237

Query: 205 FIEKYNYDPVNDKPLPGHFKWQKVD 229
           F +KYN+DPVNDKPL G F+W K++
Sbjct: 238 FTDKYNFDPVNDKPLSGRFEWVKLN 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766042|emb|CAN70215.1| hypothetical protein VITISV_012042 [Vitis vinifera]

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 155/253 (61%), Gaps = 26/253 (10%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQK------------ATSAGAGGS 48
           MGKYMRKAK A  EVAVMEV+Q   LGVRTRAKTLAL++            +       S
Sbjct: 1   MGKYMRKAK-ARCEVAVMEVSQPC-LGVRTRAKTLALERLQKSRPRPSPPQSPPQQQASS 58

Query: 49  GSYLQLRSRRLEKPAALVNETSGRRRRRRKENS--------RARERSRGKKNVDEVEEEK 100
            SYLQLRSRRL KP  LV+ +   ++  ++  S        R R  S G  ++  +  E 
Sbjct: 59  SSYLQLRSRRLLKPPILVSNSKKHKQNLKEGQSEFEVESRFRFRCGSVGSVSLGCLSGED 118

Query: 101 ETDDVAATAVEVEEEE---ENGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEI 157
                A   +++ +EE   E+   +L IEASFGEN L+ EAR+R TRE+TPCSLIRDPE 
Sbjct: 119 GVQSPAVDLLKLGKEEQILEDNANDLGIEASFGENVLDFEARDRSTRETTPCSLIRDPET 178

Query: 158 IRTPGSSNRP-TSSMQNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVND 216
           IRTPGS+ +P +SS  NR    S    +PT  EMD+FF   EEEQQR F +KYN+DPVND
Sbjct: 179 IRTPGSTTKPASSSGINRRMDNSRQGHVPTTQEMDQFFQSAEEEQQRVFTDKYNFDPVND 238

Query: 217 KPLPGHFKWQKVD 229
           KPL G F+W K++
Sbjct: 239 KPLSGRFEWVKLN 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479884|ref|XP_003632370.1| PREDICTED: cyclin-dependent kinase inhibitor 3-like [Vitis vinifera] gi|297744341|emb|CBI37311.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 114/235 (48%), Positives = 149/235 (63%), Gaps = 22/235 (9%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQKATSA----GAGGSGSYLQLRS 56
           MGKYM+KAK   G+V VMEV  SS LGVRTRAKTLALQ+        G     SYL+LRS
Sbjct: 1   MGKYMKKAKIT-GDVTVMEV--SSSLGVRTRAKTLALQRLQKTTHQEGPKPDTSYLELRS 57

Query: 57  RRLEKPAALVNETSGRRRRRRKENSRARERSRGKKNVDEVEEEKETDDVAATAVEVEEEE 116
           RRLEKP  L++E + ++    K +SR    S    +V  V   ++ +     AVE E+  
Sbjct: 58  RRLEKPP-LLSEPNKKQNPNPKASSRVELGSVNSNSVGSVPPGEKIN-----AVETED-- 109

Query: 117 ENGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRP-TSSMQNRE 175
                 + +EAS+GEN LE E R+R TRESTPCSLIRDP+ I TPGS+ RP +SS+  R 
Sbjct: 110 ------VGVEASYGENVLEFEGRDRSTRESTPCSLIRDPDTIATPGSTTRPSSSSVTTRR 163

Query: 176 AQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 230
            + +    IPTA E+++FF   EE  Q++F++KYN+D VND PLPG F+W +V P
Sbjct: 164 VRSNVLGDIPTAAELEEFFTHAEEHAQKEFMDKYNFDIVNDTPLPGRFEWVQVSP 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|306481011|emb|CBL51953.1| kip-related protein [Solanum lycopersicum var. cerasiforme]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/240 (52%), Positives = 152/240 (63%), Gaps = 20/240 (8%)

Query: 1   MGKYMRKAKT-AAGEV-AVMEVTQSSPLGVRTRAKTLALQK-------ATSAGAGGSGSY 51
           MGKYMRK KT A GEV AV++V   SPLGVRTRAKTLAL++           G  G G Y
Sbjct: 1   MGKYMRKRKTKATGEVVAVLDV---SPLGVRTRAKTLALKRLQKSSSGGGDGGDVGGGCY 57

Query: 52  LQLRSRRLEKPAALVNETSGRRRRRRKENSRARERSRGKKNVDEVEEEKETDDVAATAVE 111
           LQLRSRRLEKP  LV     RR+   KE+ R     R    V E++ +           E
Sbjct: 58  LQLRSRRLEKP--LVGFEGKRRKHPLKESKRQNRSLR----VREMKGQSWNSGSGEGEEE 111

Query: 112 VEEEEENGNKNLDIEASF-GENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSS 170
            +E+ +   K +D   SF  EN LE + RER TRESTPC+LIRDP+ I TPGSS R  ++
Sbjct: 112 KKEQVQENQKEIDNNGSFEVENLLEFDGRERTTRESTPCNLIRDPDSIPTPGSSTRANNA 171

Query: 171 MQ-NREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 229
            + N     SA  +IPTAHEM+ FFA TEE+QQ+QFIEKYN+DPVNDKPLPG +KW KVD
Sbjct: 172 SEGNGREPTSAQRIIPTAHEMNDFFAGTEEKQQKQFIEKYNFDPVNDKPLPGRYKWVKVD 231

Source: Solanum lycopersicum var. cerasiforme

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576434|ref|XP_003556336.1| PREDICTED: cyclin-dependent kinase inhibitor 3-like [Glycine max]

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 150/239 (62%), Gaps = 24/239 (10%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQSSP----LGVRTRAKTLALQKATSAG---AGGSGSYLQ 53
           MGKYM+KAK   GE+A++E T S+     +GVRTRAKTLALQK+ +     A  S SYLQ
Sbjct: 1   MGKYMKKAK-PKGELALVESTTSNTTTSYMGVRTRAKTLALQKSHAQQHELAATSDSYLQ 59

Query: 54  LRSRRLEKPAALVNETSGRRRRRRKENSRARERSR-GKKNVDEVEEEKETDDVAATAVEV 112
           LRSRRL+KP  LV+  S +R +     S   E  R G  +  +       D+      E 
Sbjct: 60  LRSRRLQKPPILVH--SPKRPKHPNPKSPIPEPPRLGLASERDATLNHNKDNTLHENAEP 117

Query: 113 EEEEENGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQ 172
           +E            ASFGEN L+ E RER TRESTPCSLIRD + +RTPGS+ RPT S +
Sbjct: 118 QE------------ASFGENVLDFEGRERSTRESTPCSLIRDSDTVRTPGSTTRPTCSAE 165

Query: 173 -NREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 230
             R  + +A   IPT+ EMD+FFA+ EE QQ++FIEKYN+DPVN+KPL G ++W+K+ P
Sbjct: 166 AYRRTEHAARRQIPTSREMDEFFAEIEEAQQKKFIEKYNFDPVNEKPLSGRYEWEKLKP 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554140|ref|XP_002518110.1| conserved hypothetical protein [Ricinus communis] gi|223542706|gb|EEF44243.1| conserved hypothetical protein [Ricinus communis]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/282 (43%), Positives = 152/282 (53%), Gaps = 68/282 (24%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQKATSAGAGG------------- 47
           MGKY+RKAKT + EVAVM+++     GVRTRAKTLALQ+                     
Sbjct: 1   MGKYIRKAKTTS-EVAVMDLS----FGVRTRAKTLALQRQRQRQRQRQPPPPPPPHPPSP 55

Query: 48  ---SGSYLQLRSRRLEKPAALVNETSGRRRRRRKENSR---------------------- 82
              +G YLQLRSRRL K   ++   S R++     NS                       
Sbjct: 56  PSSAGGYLQLRSRRLVKKPPILVHVSKRQKDGHSSNSNKVGLNPNNSNNNNSNSISSSKS 115

Query: 83  -----------ARERSRGKKNVDE--VEEEKETDDVAATAVEVEEEEENGNKNLDIE-AS 128
                       +E   G  N +E  VE+ K   D        +    N +K+L +E AS
Sbjct: 116 GSRVRVSPGSGPKEEFAGSGNREEEIVEKNKSCAD--------DNNNNNESKDLGVEEAS 167

Query: 129 FGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREAQISACSLIPTAH 188
           FGEN L+ E RE  TRESTPCSLIRDPE IRTPGS+ RP+S+  NR    S    IPTAH
Sbjct: 168 FGENVLDIEGRESSTRESTPCSLIRDPESIRTPGSTTRPSSTEPNR---TSMRRHIPTAH 224

Query: 189 EMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 230
           EMD+FF   EEEQQ++FIEKYN+DPVNDKPL G ++W K+DP
Sbjct: 225 EMDEFFTGAEEEQQKRFIEKYNFDPVNDKPLAGRYEWAKLDP 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374349342|gb|AEZ35251.1| cyclin-dependent kinase inhibitor [Persea americana]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 138/226 (61%), Gaps = 12/226 (5%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQKATSAGAGGSGSYLQLRSRRLE 60
           MGKYMRKAK  + EV VMEV+Q+S LGVRTRA+ LALQ   +  +  S SYLQLRSRRLE
Sbjct: 1   MGKYMRKAKITS-EVVVMEVSQAS-LGVRTRARALALQNLQNTSSATSSSYLQLRSRRLE 58

Query: 61  KPAALVNETSGRRRRRRKENSRARERSRGKKNVDEVEEEKETDDVAATAVEVEEEEENGN 120
           KP A   E      ++ KE  + +  S  +     V          + +   EEE     
Sbjct: 59  KPVAAEEEA-----KKPKEGCKQKCSSNSRLGSVSVNSGSVGSVSVSFSTNGEEE----G 109

Query: 121 KNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPT-SSMQNREAQIS 179
              D+EAS GEN LE E RER  RE+TP SLIRDPE +  PGS+ R T ++   R  Q +
Sbjct: 110 LWPDMEASLGENVLEYEGRERNVRETTPSSLIRDPETLEAPGSTTRRTRATASTRRKQNT 169

Query: 180 ACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKW 225
              +IP+A EM++FFA  E++QQ  F+EKYNY+P++D PLPG ++W
Sbjct: 170 MSRIIPSAQEMEEFFASAEQQQQMIFMEKYNYNPISDSPLPGRYEW 215

Source: Persea americana

Species: Persea americana

Genus: Persea

Family: Lauraceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205264|emb|CBI17323.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 136/238 (57%), Gaps = 49/238 (20%)

Query: 5   MRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQKA------------TSAGAGGSGSYL 52
           MRKAK A GEVAVMEV+Q   LGVRTRAKTLAL++                    S SYL
Sbjct: 1   MRKAK-ARGEVAVMEVSQPC-LGVRTRAKTLALERLQKSRPRPSPPQSPPQQQASSSSYL 58

Query: 53  QLRSRRLEKPAALVNETSGRRRRRRKENSRARERSRGKKNVDEVEEEKETDDVAATAVEV 112
           QLRSRRL KP  L                           VD ++  KE   +       
Sbjct: 59  QLRSRRLLKPPIL------------------------SPAVDLLKLGKEEQIL------- 87

Query: 113 EEEEENGNKNLDIEASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRP-TSSM 171
              E+N   +L IEASFGEN L+ EAR+R TRE+TPCSLIRDPE IRTPGS+ +P +SS 
Sbjct: 88  ---EDNNANDLGIEASFGENVLDFEARDRSTRETTPCSLIRDPETIRTPGSTTKPASSSG 144

Query: 172 QNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 229
            NR    S    +PT  EMD+FF   EEEQQR F +KYN+DPVNDKPL G F+W K++
Sbjct: 145 INRRMDNSRQGHVPTTQEMDQFFQSAEEEQQRVFTDKYNFDPVNDKPLSGRFEWVKLN 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442373|ref|XP_004138956.1| PREDICTED: cyclin-dependent kinase inhibitor 5-like [Cucumis sativus] gi|449525071|ref|XP_004169543.1| PREDICTED: cyclin-dependent kinase inhibitor 5-like [Cucumis sativus]

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/283 (44%), Positives = 156/283 (55%), Gaps = 75/283 (26%)

Query: 1   MGKYMRKAKTAAGEVAVMEVTQSSPLGVRTRAKTLALQK-----------ATSAGAGGSG 49
           MGKYMRK K+  GEVAVME++QSS LGV TRAKTLAL++           A+ A    SG
Sbjct: 1   MGKYMRKTKSL-GEVAVMELSQSS-LGVLTRAKTLALRRLQQSPTPSPSPASPASPVASG 58

Query: 50  SYLQLRSRRLEKPAALVNETSGRRRRRRKENSR------------------ARERSRGKK 91
           SYLQLR+RRLEKP  +    S    +R+K   R                    ERS    
Sbjct: 59  SYLQLRNRRLEKPTVVF---SAHESKRQKPTPREACTTNPSPRVSSSLKLAMPERSVSLG 115

Query: 92  NVDEVEEEKETDDVAATAVEVEEEEENG---NKNLDI---EASFGENALESEARERGTRE 145
            V+E E +   +DVA  +V   +E   G   N+N+D+   EASFGEN L+ E+RER TRE
Sbjct: 116 RVNE-EGDHTAEDVAEKSVGKFDEIHAGESKNENIDLVIEEASFGENILDFESRERSTRE 174

Query: 146 STPCSLIRDPEII------------------RTPGSSNRPTSSMQNREAQISACSLIPTA 187
           STP SLIR+P+ I                  R P SSNRP                IPTA
Sbjct: 175 STPSSLIRNPDTIRTPSSTTRPTTSAVETNHRNPYSSNRP----------------IPTA 218

Query: 188 HEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 230
            EMD+FFA  EE+QQR FIEKYN+DPV D PLPG ++W+K+ P
Sbjct: 219 REMDEFFALAEEKQQRHFIEKYNFDPVKDTPLPGRYEWEKLQP 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2046427	289	KRP4 "KIP-RELATED PROTEIN 4" [	0.452	0.359	0.557	3.4e-38
TAIR|locus:2087248	189	ICK3 [Arabidopsis thaliana (ta	0.243	0.296	0.491	2.8e-20
TAIR|locus:2012186	195	ICK5 [Arabidopsis thaliana (ta	0.2	0.235	0.5	4.7e-09
TAIR|locus:2094118	196	KRP6 "KIP-related protein 6" [	0.439	0.515	0.327	7.6e-09
TAIR|locus:2046778	191	ICK1 [Arabidopsis thaliana (ta	0.2	0.240	0.369	1.9e-06

TAIR|locus:2046427 KRP4 "KIP-RELATED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 3.4e-38, Sum P(4) = 3.4e-38
 Identities = 63/113 (55%), Positives = 76/113 (67%)

Query:   126 EASFGENA--LESEARE---RGTRESTPCSLIRDPEIIRTPGSS---NRPTSSMQNREAQ 177
             + +FG+N   LE E  +   R TRESTPCSLIR PEI+ TPGSS   N   S    RE  
Sbjct:   176 DPTFGQNFFDLEEEHTQSFNRTTRESTPCSLIRRPEIMTTPGSSTKLNICVSESNQREDS 235

Query:   178 ISACSLI-PTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 229
             +S      PT  EMD+FF+  EEEQQ+QFIEKYN+DPVN++PLPG F+W KVD
Sbjct:   236 LSRSHRRRPTTPEMDEFFSGAEEEQQKQFIEKYNFDPVNEQPLPGRFEWTKVD 288

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0030332 "cyclin binding" evidence=IPI

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045786 "negative regulation of cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

TAIR|locus:2087248 ICK3 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query:   172 QNREAQISACSLIPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 230
             +NR + IS    I +  E++ FFA  E++QQR FI+KYN+D V+D PLPG ++W KV P
Sbjct:   134 ENR-SMISDSKSIQS--EIEDFFASAEQQQQRFFIQKYNFDIVSDNPLPGRYEWVKVMP 189

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0007050 "cell cycle arrest" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA;IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

TAIR|locus:2012186 ICK5 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query:   185 PTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 230
             PT  E+D FF+  E  +Q++F EKYNYD VND PL G ++W  + P
Sbjct:   150 PTQAELDDFFSAAERYEQKRFTEKYNYDIVNDTPLEGRYQWVSLKP 195

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0030332 "cyclin binding" evidence=IPI

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0001673 "male germ cell nucleus" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

TAIR|locus:2094118 KRP6 "KIP-related protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 35/107 (32%), Positives = 56/107 (52%)

Query:   127 ASFGENALESEARERGTRESTPCSLIRDPEIIRTPGSSNRPTSSMQNREA---QISACSL 183
             +SFG + LE    E  T  ST  +     E           T+ M++  A   +      
Sbjct:    91 SSFGVD-LEDHQIETETETSTFITSNFRKETSPVSEGLGETTTEMESSSATKRKQPGVRK 149

Query:   184 IPTAHEMDKFFADTE--EEQQRQFIEKYNYDPVNDKPLPGHFKWQKV 228
              PTA E++  F++ E  +++++QFIEKYN+D VND+PL G +KW ++
Sbjct:   150 TPTAAEIEDLFSELESQDDKKKQFIEKYNFDIVNDEPLEGRYKWDRL 196

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0030332 "cyclin binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0001673 "male germ cell nucleus" evidence=IDA

TAIR|locus:2046778 ICK1 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 17/46 (36%), Positives = 32/46 (69%)

Query:   184 IPTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 229
             +PT  E++ FF + E++ + +F +KYN+D   +KPL G ++W K++
Sbjct:   146 MPTESEIEDFFVEAEKQLKEKFKKKYNFDFEKEKPLEGRYEWVKLE 191

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0010102 "lateral root morphogenesis" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0045740 "positive regulation of DNA replication" evidence=IMP

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=ISS;RCA;IDA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0010311 "lateral root formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0010440 "stomatal lineage progression" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q283L0	KRP5_ORYSJ	No assigned EC number	0.4	0.8869	0.9230	yes	no
Q9FKB5	KRP3_ARATH	No assigned EC number	0.4214	0.9130	0.9459	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031701001 SubName- Full=Chromosome chr5 scaffold_58, whole genome shotgun sequence; (263 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam02234	51	pfam02234, CDI, Cyclin-dependent kinase inhibitor	5e-15

>gnl|CDD|216942 pfam02234, CDI, Cyclin-dependent kinase inhibitor

 Score = 66.5 bits (163), Expect = 5e-15
 Identities = 24/47 (51%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 184 IPTAH-EMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD 229
            P  H E+++FFA   +EQQ +F EK+N+D VND PLPG ++W++VD
Sbjct: 5   GPVDHEELEEFFAAALKEQQEEFSEKWNFDFVNDTPLPGRYEWERVD 51

Cell cycle progression is negatively controlled by cyclin-dependent kinases inhibitors (CDIs). CDIs are involved in cell cycle arrest at the G1 phase. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
PF02234	51	CDI: Cyclin-dependent kinase inhibitor; InterPro:	99.69
KOG4743	195	consensus Cyclin-dependent kinase inhibitor [Signa	98.37

>PF02234 CDI: Cyclin-dependent kinase inhibitor; InterPro: IPR003175 Cell cycle progression is negatively controlled by cyclin-dependent kinases inhibitors (CDIs)

Probab=99.69  E-value=3.9e-18  Score=119.82  Aligned_cols=45  Identities=47%  Similarity=1.047  Sum_probs=38.8

Q ss_pred             CC-hHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCccceeecC
Q 026981          185 PT-AHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD  229 (230)
Q Consensus       185 Pt-~~E~eeFFa~aE~~~~~rF~~KyNfD~~~d~PL~GRyEW~~~~  229 (230)
                      |+ .+||+.||++++++++++|++||||||++|+||+|||+|++|+
T Consensus         6 p~d~~e~~~~~~~~l~~~~e~~~~kWNFDF~~~~PL~GryeWe~v~   51 (51)
T PF02234_consen    6 PVDHEELERFFQEELQEQREEFSEKWNFDFVNDTPLPGRYEWERVD   51 (51)
T ss_dssp             ---HHHHHHHHHHHHTTTTHHHHHHHTEETTTTEE-SSSS--EEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCCeEeEeCC
Confidence            66 7999999999999999999999999999999999999999984

CDIs are involved in cell cycle arrest at the G1 phase.; GO: 0004861 cyclin-dependent protein kinase inhibitor activity, 0007050 cell cycle arrest, 0005634 nucleus; PDB: 1H27_E 1JSU_C.

>KOG4743 consensus Cyclin-dependent kinase inhibitor [Signal transduction mechanisms]

Probab=98.37  E-value=4.4e-07  Score=79.65  Aligned_cols=45  Identities=22%  Similarity=0.483  Sum_probs=36.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCC--ccceeecC
Q 026981          185 PTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPG--HFKWQKVD  229 (230)
Q Consensus       185 Pt~~E~eeFFa~aE~~~~~rF~~KyNfD~~~d~PL~G--RyEW~~~~  229 (230)
                      |..+|+---|.+.=+..++.-++||||||..|+||+|  +|+|..|+
T Consensus        26 vd~EElSR~l~s~l~~m~~e~~~KWnFDFq~~~PL~g~g~y~we~V~   72 (195)
T KOG4743|consen   26 VDHEELSRDLNSRLERMNEEDQQKWNFDFQQGTPLEGSGDYEWEEVS   72 (195)
T ss_pred             CCHHHHhHHHHHHHHHHHHHHHhccCcccccCCcccCCCCceeEEcc
Confidence            3556666667777667777788999999999999977  99999885

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1jsu_C	84	P27, KIP1, CIP2; complex (transferase/cyclin/inhib	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1 Length = 84

 Score = 41.9 bits (98), Expect = 8e-06
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 189 EMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVDP 230
           E+ +       + +     K+N+D  N KPL G ++WQ+V+ 
Sbjct: 18  ELTRDLEKHCRDMEEASQRKWNFDFQNHKPLEGKYEWQEVEK 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 48/357 (13%), Positives = 92/357 (25%), Gaps = 163/357 (45%)

Query: 24  SPLGVRTRAKTL-----ALQKATSA------GAGGSG-SYL---QLRSRRLE-------- 60
           +   V +R +       AL +   A      G  GSG +++      S +++        
Sbjct: 127 AKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 61  --------KPAALV----------------NETSGRRRRRRKENSRARER----SRGKKN 92
                    P  ++                        + R  + +A  R    S+  +N
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 93  ----VDEVEEEKE-------------------TDDV-AATAVEVEEEEENGN----KNLD 124
               +  V+  K                    TD + AAT   +  +  +      +   
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 125 IEASFGENALESEARERGTRESTP--CSLI----RD------------------------ 154
           +   + +   +   RE     + P   S+I    RD                        
Sbjct: 306 LLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 155 ----PEIIRT--------PGSSNRPT------------------------SSMQNREAQI 178
               P   R         P S++ PT                         S+  ++ + 
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 179 SACSLIPTAHEMD-KFFADTEEEQQ--RQFIEKYN----YDPVNDKPLP---GHFKW 225
           S  S+      +  +     E E    R  ++ YN    +D  +D   P    +F  
Sbjct: 424 STISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYS 475

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
1jsu_C	84	P27, KIP1, CIP2; complex (transferase/cyclin/inhib	99.68

>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1

Probab=99.68  E-value=8.6e-18  Score=128.07  Aligned_cols=51  Identities=29%  Similarity=0.581  Sum_probs=46.2

Q ss_pred             ccCCCC---CChHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCccceeecC
Q 026981          179 SACSLI---PTAHEMDKFFADTEEEQQRQFIEKYNYDPVNDKPLPGHFKWQKVD  229 (230)
Q Consensus       179 ~~~~~~---Pt~~E~eeFFa~aE~~~~~rF~~KyNfD~~~d~PL~GRyEW~~~~  229 (230)
                      ++++.+   |..+||++||++++++++++|++||||||++|+||+|||||++|.
T Consensus         5 ~a~R~LFG~vd~eEl~~~f~~~l~~~~e~~~~KWNFDF~~d~PL~GryeWe~V~   58 (84)
T 1jsu_C            5 SACRNLFGPVDHEELTRDLEKHCRDMEEASQRKWNFDFQNHKPLEGKYEWQEVE   58 (84)
T ss_dssp             TTCCCSSCCCCHHHHHHHHHHHHTTTTHHHHHHHTEETTTTEECSSSSCCEEEE
T ss_pred             chhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCceEEEEcc
Confidence            344555   778999999999999999999999999999999999999999984

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00