Citrus Sinensis ID: 026995

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHcccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccHHHcccccccEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHcccccc
mrrtvksapqsiwygpdrpkylgpfseqtpsyltgefpgdygwdtaglsadpetfaKNRELEVIHSRWAMLGALgcvfpeilskngvkFGEAVWFKAGAQIFseggldylgnpnlihAQSILAIWACQVVLMGFVegyrigggplgegldplypggafdplgladdpdQFAELKVKELKNGRLAMFSMFGFFVQAIVTgkgpienlydhiadpvannawayatnfvpgk
mrrtvksapqsiwygpdrpkylgPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIgggplgegldplypggAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
***********IWYGP***KYLGPF***TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV***
*********************LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG*
*********QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
***********IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query229 2.2.26 [Sep-21-2011]
Q10HD0263 Chlorophyll a-b binding p yes no 1.0 0.870 0.960 1e-128
A2XJ35263 Chlorophyll a-b binding p N/A no 1.0 0.870 0.960 1e-128
P27518265 Chlorophyll a-b binding p N/A no 1.0 0.864 0.951 1e-128
P14278265 Chlorophyll a-b binding p N/A no 1.0 0.864 0.943 1e-126
P12062265 Chlorophyll a-b binding p N/A no 1.0 0.864 0.938 1e-126
P27520265 Chlorophyll a-b binding p N/A no 1.0 0.864 0.934 1e-126
P27494265 Chlorophyll a-b binding p N/A no 1.0 0.864 0.930 1e-126
P12328264 Chlorophyll a-b binding p N/A no 1.0 0.867 0.925 1e-125
P14279237 Chlorophyll a-b binding p N/A no 1.0 0.966 0.943 1e-125
P10049266 Chlorophyll a-b binding p N/A no 1.0 0.860 0.912 1e-123
>sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1 Back     alignment and function desciption
 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/229 (96%), Positives = 226/229 (98%)

Query: 1   MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 60
           MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRE
Sbjct: 35  MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRE 94

Query: 61  LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 120
           LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQS
Sbjct: 95  LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQS 154

Query: 121 ILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKN 180
           ILAIWA QVVLMGFVEGYR+GGGPLGEGLD +YPGGAFDPLGLADDPD FAELKVKELKN
Sbjct: 155 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKN 214

Query: 181 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229
           GRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1 Back     alignment and function description
>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2 Back     alignment and function description
>sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1 Back     alignment and function description
>sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1 Back     alignment and function description
>sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1 Back     alignment and function description
>sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1 Back     alignment and function description
>sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1 Back     alignment and function description
>sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1 Back     alignment and function description
>sp|P10049|CB21_PINTH Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
449453598265 PREDICTED: chlorophyll a-b binding prote 1.0 0.864 0.960 1e-128
255581778265 chlorophyll A/B binding protein, putativ 1.0 0.864 0.960 1e-127
224131818265 light-harvesting complex II protein Lhcb 1.0 0.864 0.956 1e-127
115453971263 Os03g0592500 [Oryza sativa Japonica Grou 1.0 0.870 0.960 1e-127
126566046264 chlorophyll a/b binding protein of LHCII 1.0 0.867 0.956 1e-127
1262847246 type 2 light-harvesting chlorophyll a/b- 1.0 0.930 0.951 1e-126
225447576265 PREDICTED: chlorophyll a-b binding prote 1.0 0.864 0.956 1e-126
1345698265 RecName: Full=Chlorophyll a-b binding pr 1.0 0.864 0.951 1e-126
3126854263 chlorophyll a/b binding protein [Oryza s 1.0 0.870 0.956 1e-126
224064850265 light-harvesting complex II protein Lhcb 1.0 0.864 0.956 1e-126
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like [Cucumis sativus] gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/229 (96%), Positives = 228/229 (99%)

Query: 1   MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 60
           MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE
Sbjct: 37  MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96

Query: 61  LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 120
           LEVIHSRWAMLGALGCVFPE+L+KNGVKFGE+VWFKAG+QIFSEGGLDYLGNPNLIHAQS
Sbjct: 97  LEVIHSRWAMLGALGCVFPELLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156

Query: 121 ILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKN 180
           ILAIWACQVVLMGFVEGYR+GGGPLGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKN
Sbjct: 157 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216

Query: 181 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229
           GRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa] gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group] gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group] gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group] gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group] gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group] gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa] Back     alignment and taxonomy information
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium longiflorum] Back     alignment and taxonomy information
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide, partial [Pinus palustris] Back     alignment and taxonomy information
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Vitis vinifera] gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera] Back     alignment and taxonomy information
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic; AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags: Precursor gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa] gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa] gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa] gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
TAIR|locus:2089139266 LHCB2.3 "photosystem II light 1.0 0.860 0.877 3.4e-109
TAIR|locus:2044988265 LHCB2.2 "photosystem II light 1.0 0.864 0.864 1.3e-107
TAIR|locus:2042148265 LHCB2.1 "photosystem II light 0.995 0.860 0.864 4.4e-107
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 1.0 0.864 0.794 8.4e-97
UNIPROTKB|P12331261 CAB2R "Chlorophyll a-b binding 0.973 0.854 0.811 1.8e-96
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 1.0 0.857 0.781 1.8e-96
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 1.0 0.857 0.781 1.8e-96
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 1.0 0.857 0.781 1.8e-96
TAIR|locus:2040934265 LHB1B2 "photosystem II light h 1.0 0.864 0.776 4.7e-96
TAIR|locus:2040944266 LHB1B1 "light-harvesting chlor 1.0 0.860 0.775 1.2e-95
TAIR|locus:2089139 LHCB2.3 "photosystem II light harvesting complex gene 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
 Identities = 201/229 (87%), Positives = 208/229 (90%)

Query:     1 MRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 60
             MRRTVKS PQSIWYGPDRPKYLGPFSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRE
Sbjct:    38 MRRTVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 97

Query:    61 LEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 120
             LEVIHSRWAMLGALGC FPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQS
Sbjct:    98 LEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 157

Query:   121 ILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKN 180
             ILAIWACQVVLMGF+EGYRI                AFDPL LA+DP+ F+ELKVKELKN
Sbjct:   158 ILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKN 217

Query:   181 GRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229
             GRLAMFSMFGFFVQAIVTGKGPIENL+DHIADPVANNAWAYATNFVPGK
Sbjct:   218 GRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANNAWAYATNFVPGK 266
GO:0009507 "chloroplast" evidence=ISM
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009637 "response to blue light" evidence=IEP;RCA
GO:0010114 "response to red light" evidence=IEP;RCA
GO:0010218 "response to far red light" evidence=IEP;RCA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0042631 "cellular response to water deprivation" evidence=RCA
TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P08222CB22_CUCSANo assigned EC number0.89800.89951.0N/Ano
P08221CB21_CUCSANo assigned EC number0.86581.00.8980N/Ano
P06671CB22_MAIZENo assigned EC number0.88120.95630.8264N/Ano
P12328CB21_LEMGINo assigned EC number0.92571.00.8674N/Ano
P12329CB21_MAIZENo assigned EC number0.87551.00.8740N/Ano
P27492CB21_TOBACNo assigned EC number0.84121.00.8609N/Ano
P27493CB22_TOBACNo assigned EC number0.85281.00.8641N/Ano
P10049CB21_PINTHNo assigned EC number0.91261.00.8609N/Ano
P27491CB27_TOBACNo assigned EC number0.84541.00.8576N/Ano
P27496CB25_TOBACNo assigned EC number0.84121.00.8576N/Ano
P27497CB29_MAIZENo assigned EC number0.87670.95630.8264N/Ano
P27494CB23_TOBACNo assigned EC number0.93011.00.8641N/Ano
P27495CB24_TOBACNo assigned EC number0.84541.00.8576N/Ano
P20866CB2_PHYPANo assigned EC number0.83910.99560.8475N/Ano
P04778CB1C_ARATHNo assigned EC number0.83261.00.8576nono
P04779CB21_PETSPNo assigned EC number0.82401.00.8609N/Ano
P07371CB22_PEANo assigned EC number0.84121.00.8513N/Ano
P07370CB2B_SOLLCNo assigned EC number0.86581.00.8641N/Ano
P24006CB2A_PYRPYNo assigned EC number0.85080.99560.8201N/Ano
P27518CB21_GOSHINo assigned EC number0.95191.00.8641N/Ano
P04159CB21_PEANo assigned EC number0.85200.97370.9780N/Ano
Q8VZ87CB1B_ARATHNo assigned EC number0.83261.00.8576nono
P0CJ48CB1A_ARATHNo assigned EC number0.83261.00.8576nono
P12469CB23_NICPLNo assigned EC number0.82831.00.8576N/Ano
P12333CB2A_SPIOLNo assigned EC number0.85900.98250.8426N/Ano
P12331CB22_ORYSJNo assigned EC number0.84121.00.8773nono
P12330CB21_ORYSJNo assigned EC number0.84181.00.8641nono
P09755CB22_SOYBNNo assigned EC number0.80340.94320.8437nono
P09756CB23_SOYBNNo assigned EC number0.86141.00.8707nono
Q10HD0CB23_ORYSJNo assigned EC number0.96061.00.8707yesno
P04784CB21_WHEATNo assigned EC number0.81541.00.8609N/Ano
P92919CB23_APIGRNo assigned EC number0.84781.00.8674N/Ano
P04781CB23_PETSPNo assigned EC number0.83691.00.8576N/Ano
P04780CB22_PETSPNo assigned EC number0.81541.00.8576N/Ano
P04783CB25_PETSPNo assigned EC number0.84541.00.8576N/Ano
P04782CB24_PETSPNo assigned EC number0.84541.00.8609N/Ano
P13851CB21_SINALNo assigned EC number0.83181.00.8609N/Ano
P07369CB2G_SOLLCNo assigned EC number0.85401.00.8576N/Ano
A2XJ35CB23_ORYSINo assigned EC number0.96061.00.8707N/Ano
P14278CB24_SOLLCNo assigned EC number0.94321.00.8641N/Ano
P12062CB26_PETSPNo assigned EC number0.93881.00.8641N/Ano
P27490CB28_PEANo assigned EC number0.83691.00.8544N/Ano
P12470CB25_NICPLNo assigned EC number0.83261.00.8609N/Ano
P12471CB21_SOYBNNo assigned EC number0.83541.00.9346nono
P15194CB2B_PINSYNo assigned EC number0.85080.99560.8321N/Ano
P15195CB23_POLMUNo assigned EC number0.84271.00.8641N/Ano
P15193CB2A_PINSYNo assigned EC number0.85520.99560.8201N/Ano
P27520CB215_PEANo assigned EC number0.93441.00.8641N/Ano
P14279CB25_SOLLCNo assigned EC number0.94321.00.9662N/Ano
P08963CB22_HORVUNo assigned EC number0.83911.00.8674N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Lhcb2-1
light-harvesting complex II protein Lhcb2 (265 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 0.0
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 3e-78
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 3e-55
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 5e-49
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 8e-44
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 1e-37
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 4e-37
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 1e-36
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 2e-35
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 4e-33
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 3e-31
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 2e-17
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 3e-08
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 5e-06
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 3e-05
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
 Score =  510 bits (1314), Expect = 0.0
 Identities = 206/231 (89%), Positives = 219/231 (94%), Gaps = 2/231 (0%)

Query: 1   MRRTVKSA--PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKN 58
           MR+TV  A    SIWYGPDRPKYLGPFS +TPSYLTGEFPGDYGWDTAGLSADPETFA+N
Sbjct: 32  MRKTVAKAAGSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARN 91

Query: 59  RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 118
           RELEVIH+RWAMLGALGCV PE+L+KNGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HA
Sbjct: 92  RELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 151

Query: 119 QSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKEL 178
           QSILAIWACQVVLMG VEGYR+ GGPLGEGLDPLYPGG+FDPLGLADDPD FAELKVKE+
Sbjct: 152 QSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEI 211

Query: 179 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229
           KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVANNAWAYATNFVPGK
Sbjct: 212 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYATNFVPGK 262

Length = 262
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 229
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.6
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.6
PLN00147 252 light-harvesting complex I chlorophyll-a/b binding 99.56
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.53
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.52
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.5
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.5
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.48
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.45
PLN00187286 photosystem II light-harvesting complex II protein 99.45
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.4
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.39
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.39
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.04
PLN00084214 photosystem II subunit S (PsbS); Provisional 98.29
PHA0233735 putative high light inducible protein 98.28
PLN00014250 light-harvesting-like protein 3; Provisional 97.72
PHA0233735 putative high light inducible protein 97.24
PLN00014250 light-harvesting-like protein 3; Provisional 94.35
PLN00084214 photosystem II subunit S (PsbS); Provisional 92.34
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.9e-67  Score=465.95  Aligned_cols=228  Identities=90%  Similarity=1.537  Sum_probs=209.0

Q ss_pred             ccccccC--CCCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchh
Q 026995            2 RRTVKSA--PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP   79 (229)
Q Consensus         2 ~~~~~~~--~~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~   79 (229)
                      ||+++.+  ..+.||++||++|+|||+.++|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++
T Consensus        33 ~~~~~~~~~~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~  112 (262)
T PLN00025         33 RKTVAKAAGSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTP  112 (262)
T ss_pred             chhhcccccccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhH
Confidence            4544444  78899999999999999668899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccchhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCC
Q 026995           80 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFD  159 (229)
Q Consensus        80 e~~~~~G~~f~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~~~g~~~~~~~PGd~FD  159 (229)
                      |+++..|++|.++.|++++.+++++++++|+++|..++++.+.+++++|+++||++|.+|+.+.+.++..+..||||+||
T Consensus       113 e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FD  192 (262)
T PLN00025        113 ELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFD  192 (262)
T ss_pred             HHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCC
Confidence            99988888888888999998888899999999998888888888889999999999999987655555556789999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCcccccccCCCCC
Q 026995          160 PLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK  229 (229)
Q Consensus       160 Plgl~~d~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~~~~~~~  229 (229)
                      ||||.+|+++++++|++|||||||||+|++||++|+++||++|++||.+|+++|+++|++++.++++|.+
T Consensus       193 PlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~~~~~~~  262 (262)
T PLN00025        193 PLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYATNFVPGK  262 (262)
T ss_pred             ccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhhhcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998999864

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 1e-105
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 1e-104
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 1e-103
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 4e-29
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 7e-29
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 8e-29
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 2e-27
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 5e-27
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 3e-25
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 1e-20
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 2e-20
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 4e-19
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 9e-18
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 1e-14
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 1e-12
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 4e-12
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  375 bits (964), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/219 (82%), Positives = 195/219 (89%)
Query: 11  SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 70
           S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAM
Sbjct: 14  SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAM 73
Query: 71  LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 130
           LGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+
Sbjct: 74  LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 133
Query: 131 LMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 190
           LMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFG
Sbjct: 134 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 193
Query: 191 FFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229
           FFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 194 FFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 1e-87
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 1e-57
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 3e-56
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 4e-06
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 3e-53
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 3e-52
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 1e-50
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
 Score =  257 bits (658), Expect = 1e-87
 Identities = 193/227 (85%), Positives = 210/227 (92%)

Query: 3   RTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 62
               ++  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELE
Sbjct: 6   TKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELE 65

Query: 63  VIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIL 122
           VIHSRWAMLGALG VFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL
Sbjct: 66  VIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 125

Query: 123 AIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGR 182
           AIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKELKNGR
Sbjct: 126 AIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGR 185

Query: 183 LAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 229
           LAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 186 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.53
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.45
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.45
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.41
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.36
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.31
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-68  Score=467.85  Aligned_cols=223  Identities=87%  Similarity=1.480  Sum_probs=205.8

Q ss_pred             cCCCCCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCC
Q 026995            7 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG   86 (229)
Q Consensus         7 ~~~~~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G   86 (229)
                      ++++|+||+++|++|+|||+.++|+||||+++||+|||||||++|+++++||||+|||||||||||++|++++|+++..|
T Consensus        10 ~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G   89 (232)
T 2bhw_A           10 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG   89 (232)
T ss_dssp             CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence            67899999999999999986689999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccccchhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026995           87 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADD  166 (229)
Q Consensus        87 ~~f~~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~~~g~~~~~~~PGd~FDPlgl~~d  166 (229)
                      ++|+++.|+++|...+.+++++|+++|...+.|++..++++|+++||.+|.+|+.+++.++..+..+|||+||||++.+|
T Consensus        90 ~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~  169 (232)
T 2bhw_A           90 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADD  169 (232)
T ss_dssp             CCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCS
T ss_pred             cCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccc
Confidence            88888889999877787777888888877777888888999999999999998765444444466899999999999999


Q ss_pred             hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCcccccccCCCCC
Q 026995          167 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK  229 (229)
Q Consensus       167 ~~~~~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~~~~~~~  229 (229)
                      +++++++|.+|||||||||+||+|+++|+.+||++|++|+.+|+++|+++|++++.+++||++
T Consensus       170 ~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~~~~~  232 (232)
T 2bhw_A          170 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK  232 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTTCSCC
T ss_pred             hHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999985
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 229
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 1e-103
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  296 bits (758), Expect = e-103
 Identities = 191/218 (87%), Positives = 207/218 (94%)

Query: 11  SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 70
           S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAM
Sbjct: 1   SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 60

Query: 71  LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 130
           LGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+
Sbjct: 61  LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVI 120

Query: 131 LMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 190
           LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFG
Sbjct: 121 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 180

Query: 191 FFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 228
           FFVQAIVTGKGP+ENL DH+ADPV NNAW +ATNFVPG
Sbjct: 181 FFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG 218

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.59
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=2.8e-68  Score=459.40  Aligned_cols=218  Identities=88%  Similarity=1.532  Sum_probs=191.1

Q ss_pred             CCcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCChHHHhhhHHHHHhhhhhhhhhhcccchhhhhhcCCcccc
Q 026995           11 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG   90 (229)
Q Consensus        11 ~~~~~~~~~~~~~p~~~~~p~~l~g~~~G~~gfDPlgl~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~~f~   90 (229)
                      |+||++||++|++||+.+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|++++|++++.+..+.
T Consensus         1 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~~~~   80 (218)
T d1rwta_           1 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG   80 (218)
T ss_dssp             CTTSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred             CCCCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCCCCC
Confidence            79999999999999977889999999999999999999999999999999999999999999999999999987666566


Q ss_pred             chhhhhcchhhcccCCccCCCCCchhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 026995           91 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQF  170 (229)
Q Consensus        91 ~~~w~~ag~~~~~~g~~~~~~~p~~~~~~~i~~~~~~qi~~~g~~E~~~~~~~~~g~~~~~~~PGd~FDPlgl~~d~~~~  170 (229)
                      ...|+.++...+..+.++++..+.....+.+..++.+++.+++.+|..+..+.+.+...+..+||+.|||+++.++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~~e~~  160 (218)
T d1rwta_          81 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF  160 (218)
T ss_dssp             CCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCSHHHH
T ss_pred             CcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCcccccCCCCCCCCccccccCCCHHHH
Confidence            66788776655666666666666555556666667777788999998876655444445667777779999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccCCcccccccCCCC
Q 026995          171 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG  228 (229)
Q Consensus       171 ~~~~~~ELkNGRLAMlai~G~v~qe~itG~gpl~~l~~~~~~P~~~~~~~~~~~~~~~  228 (229)
                      +++|++||||||||||||+||++||++||++|++||.+|+++|+++||++..+|+|||
T Consensus       161 ~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~~~~~~  218 (218)
T d1rwta_         161 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG  218 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTTSSCCC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHhccCCC
Confidence            9999999999999999999999999999999999999999999999999999999997
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure