Citrus Sinensis ID: 027009

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MSQWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLYSMTLELV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHccccccEEEEEEcHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEccccccccccccEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHcccEEEEEcccccccHHHccccHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEEccccHcccccccEEEccccccccccccEEEEcc
Coil and Loop (DISEMBL)
msqwlhqrplhnplpnpyplsprnsmtfqfqrpmllvLNRTTLLVLLSLLVVLGVilpwtgtpgfmfpnatsslAKWRDYTLSQAASFVAKNGTIIVCAvsqpylpflnNWLISISRQKHQDQVLVIAEDYATLYKvngrwpghavlvppapdsqtahkfgsqgffnftsrrpchlLHILELGYnvmyndvdmvwlkdpfpylqgdhdvyftdDMAAVRTLYSMTLELV
Flexible Loop (DISEMBL)
msqwlhqrplhnplpnpyPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLYSMTLELV
Low Complexity Region (SEG)
MSQWLHQRplhnplpnpyplsprnSMTFQFQRPMllvlnrttllvllsllvvlgvilPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLYSMTLELV
Disordered region (IsUnstruct)
**************************TFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPA****TAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLYSMT****
Disordered Region (DISOPRED)
************************************VLNRTTLLVLLSLLVVLGVILPWTGTPG****************TLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAP******KFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLYSMTLELV
Disordered Region (DISEMBL)
MSQWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLYSMTLELV
Disordered Region (DISPRO)
*************LP***************QRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNA*SSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLYSMTLELV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSQWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLYSMTLELV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q54RP0	648	UDP-galactose:fucoside al	yes	no	0.572	0.202	0.263	2e-05

>sp|Q54RP0|AGTA_DICDI UDP-galactose:fucoside alpha-3-galactosyltransferase OS=Dictyostelium discoideum GN=agtA PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 77  WRDYTLSQAASF----VAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYA 132
           +RD TL+    F    + K+  I+ C   + Y  F     I   R   +D ++  +    
Sbjct: 22  FRDMTLNLLKCFEKLSIDKSRYILYCMDDKAYQFFAEFKGIECQRFS-RDDIINSSTSST 80

Query: 133 TLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVD 192
            L+  N       +       S+ A  +G  GF    + +P  +L +L+ GYNV++ D D
Sbjct: 81  QLFHDNNTNDNKGIY------SENAESYGDIGFRAICNEKPLVVLDVLKKGYNVLWTDTD 134

Query: 193 MVWLKDPFPYLQGD--HDVYFTDD 214
           +VW +DPF +   D   +  FT+D
Sbjct: 135 IVWKRDPFIHFYQDINQENQFTND 158

Specifically catalyzes the transfer of a galactosyl residue to the hydroxyproline-linked saccharide on Skp1 protein (fpaA/fpaB). Catalyzes the formation of a Gal-alpha-1,3-Fuc linkage, leading to Gal-Fuc-Gal-GlcNAc-HyPro143-Skp1.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 3EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
255541750	356	conserved hypothetical protein [Ricinus	0.951	0.612	0.765	9e-94
225454397	361	PREDICTED: UDP-galactose:fucoside alpha-	0.882	0.559	0.739	3e-83
449441404	355	PREDICTED: UDP-galactose:fucoside alpha-	0.938	0.605	0.729	1e-82
296085981	1331	unnamed protein product [Vitis vinifera]	0.895	0.154	0.735	1e-79
224127804	284	predicted protein [Populus trichocarpa]	0.934	0.753	0.737	8e-78
2191131	444	A_IG002N01.8 gene product [Arabidopsis t	0.965	0.497	0.709	1e-77
30678839	360	rhamnogalacturonan II specific xylosyltr	0.947	0.602	0.713	1e-76
297810037	356	hypothetical protein ARALYDRAFT_912111 [	0.930	0.598	0.713	1e-76
18411573	299	rhamnogalacturonan II specific xylosyltr	0.947	0.725	0.713	1e-76
13877593	299	unknown protein [Arabidopsis thaliana]	0.947	0.725	0.713	2e-76

>gi|255541750|ref|XP_002511939.1| conserved hypothetical protein [Ricinus communis] gi|223549119|gb|EEF50608.1| conserved hypothetical protein [Ricinus communis]

 Score =  348 bits (893), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 170/222 (76%), Positives = 190/222 (85%), Gaps = 4/222 (1%)

Query: 1   MSQWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWT 60
           M+ +LHQRPLHN L +PYPLSPRNS   Q Q   + + +RT L+VL SLL++LGV +PWT
Sbjct: 1   MTSFLHQRPLHNSLSDPYPLSPRNSANSQRQ---ISIFSRTGLIVLFSLLLILGVFVPWT 57

Query: 61  GTPGFMF-PNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQK 119
             P  +F     SS+AKWR YTL QAASFVA+NGT+IVCAVSQPYLPFLNNWLISI+RQK
Sbjct: 58  ELPNGIFSATKQSSVAKWRQYTLPQAASFVAQNGTVIVCAVSQPYLPFLNNWLISITRQK 117

Query: 120 HQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHI 179
           HQD+VLVIAEDYATLYKVN +WPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRP HLLH+
Sbjct: 118 HQDKVLVIAEDYATLYKVNEKWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPRHLLHL 177

Query: 180 LELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
           LELGYNVMYNDVDMVWL DPF YL+G HDVYFTDDMAAV+ L
Sbjct: 178 LELGYNVMYNDVDMVWLGDPFIYLEGKHDVYFTDDMAAVKPL 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454397|ref|XP_002279469.1| PREDICTED: UDP-galactose:fucoside alpha-3-galactosyltransferase [Vitis vinifera] gi|297745375|emb|CBI40455.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 156/211 (73%), Positives = 180/211 (85%), Gaps = 9/211 (4%)

Query: 14  LPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPN---A 70
           L NP P+SPRN +   ++RP + +  RT LL+LL+L+VV+GV+LP   T     P+   +
Sbjct: 20  LSNPNPISPRNPL--DWRRP-ISIFGRTGLLILLTLMVVVGVLLP---TMKMRMPDGLLS 73

Query: 71  TSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED 130
            +S++KWRDYTL+QAA FVAKNGT+IVCAVSQPYLPFLNNWLISI+RQKHQD+VLVIAED
Sbjct: 74  RASVSKWRDYTLAQAAEFVAKNGTVIVCAVSQPYLPFLNNWLISIARQKHQDKVLVIAED 133

Query: 131 YATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYND 190
           YATLY VN +WPGHAVLVPPAPD+QTAHKFGS GFFNFTSRRP HLL+ILELGYNVMYND
Sbjct: 134 YATLYTVNQKWPGHAVLVPPAPDAQTAHKFGSMGFFNFTSRRPRHLLNILELGYNVMYND 193

Query: 191 VDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
           VDMVWL DPFPYLQG HDVYFTDDMAAV+ L
Sbjct: 194 VDMVWLADPFPYLQGKHDVYFTDDMAAVKPL 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441404|ref|XP_004138472.1| PREDICTED: UDP-galactose:fucoside alpha-3-galactosyltransferase-like [Cucumis sativus] gi|449495244|ref|XP_004159776.1| PREDICTED: UDP-galactose:fucoside alpha-3-galactosyltransferase-like [Cucumis sativus]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/218 (72%), Positives = 184/218 (84%), Gaps = 3/218 (1%)

Query: 5   LHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPG 64
           LHQR  H+ L N YPLSPR+S + +    +   +N   LL LLSL+V+LGV LPW     
Sbjct: 5   LHQRSTHSSLANSYPLSPRSSSSSERSFSIFSPIN---LLALLSLIVILGVFLPWMNIQE 61

Query: 65  FMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQV 124
            +F ++  S +KWR+Y+L++AASFVA+NGT+IVCAVSQPYLPFLNNWLIS+SRQKH ++V
Sbjct: 62  SIFSSSKVSNSKWREYSLAEAASFVARNGTVIVCAVSQPYLPFLNNWLISLSRQKHHEKV 121

Query: 125 LVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGY 184
           LVIAEDYATLYKVN RWPGHAVLVPPAPD+QTAHKFGSQGFFNFTSRRP HLLHILELGY
Sbjct: 122 LVIAEDYATLYKVNERWPGHAVLVPPAPDAQTAHKFGSQGFFNFTSRRPRHLLHILELGY 181

Query: 185 NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLY 222
           NVMYNDVDMVWL DPFPYLQG+HDVYFTDDMAAV+ L+
Sbjct: 182 NVMYNDVDMVWLADPFPYLQGNHDVYFTDDMAAVKPLH 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085981|emb|CBI31422.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 153/208 (73%), Positives = 172/208 (82%), Gaps = 3/208 (1%)

Query: 14   LPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPGFMFPNATSS 73
            L + YP+S R+S  +      + V  RT LLVLL+L+VVLGV+LP    P  +F  +  S
Sbjct: 990  LSDSYPISARSSPNWGRS---ISVFGRTGLLVLLTLVVVLGVVLPGMRAPDGLFGGSKVS 1046

Query: 74   LAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYAT 133
            ++KWR+YTL +A  F AKNGT+IVCAVSQPYLPFLNNWLISISRQKHQD+VLVIAEDYAT
Sbjct: 1047 VSKWREYTLEEAVPFAAKNGTLIVCAVSQPYLPFLNNWLISISRQKHQDKVLVIAEDYAT 1106

Query: 134  LYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDM 193
            LY VN RWPGHAVLVPPAPD+Q AHKFGSQGFFNFTSRRP HLL+ILELGYNVMYNDVDM
Sbjct: 1107 LYAVNDRWPGHAVLVPPAPDAQVAHKFGSQGFFNFTSRRPRHLLYILELGYNVMYNDVDM 1166

Query: 194  VWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
            VWL DPFPYLQGDHDVYFTDDM AV+ L
Sbjct: 1167 VWLADPFPYLQGDHDVYFTDDMTAVKPL 1194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127804|ref|XP_002320168.1| predicted protein [Populus trichocarpa] gi|222860941|gb|EEE98483.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 160/217 (73%), Positives = 180/217 (82%), Gaps = 3/217 (1%)

Query: 5   LHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGTPG 64
           LHQRPLH  L +PYPLS          +  + + +RT L+ +LSLL++LGVILPWTGTP 
Sbjct: 2   LHQRPLHGTLSDPYPLS---PRQSSSSQRQISLFSRTGLIAILSLLLILGVILPWTGTPS 58

Query: 65  FMFPNATSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQV 124
                  +SLAKW+ YTL QA +FVAKN T+IVCAVSQPYLPFL+NWLISISRQKHQD+V
Sbjct: 59  IFSATKPASLAKWQQYTLPQAVAFVAKNKTVIVCAVSQPYLPFLSNWLISISRQKHQDKV 118

Query: 125 LVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGY 184
           LVIAEDYATLY VN RWPGHAVLVPPAPDSQ+AHKFGSQGFFNFTSRRP HLLHILELGY
Sbjct: 119 LVIAEDYATLYNVNERWPGHAVLVPPAPDSQSAHKFGSQGFFNFTSRRPRHLLHILELGY 178

Query: 185 NVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
           +VMYNDVDMVWL DPF YL+G+HDVYFTDDMAAV+ L
Sbjct: 179 DVMYNDVDMVWLGDPFRYLEGNHDVYFTDDMAAVKPL 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2191131|gb|AAB61018.1| A_IG002N01.8 gene product [Arabidopsis thaliana]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/224 (70%), Positives = 181/224 (80%), Gaps = 3/224 (1%)

Query: 3   QWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGT 62
           ++LHQRP+ NP  NP+  S   S +    RP + +L+R  LL+LL+LLV+LGV LPW G+
Sbjct: 76  KFLHQRPIQNPFTNPFSSS-PLSTSSISNRP-ISLLSRNGLLLLLALLVILGVFLPWAGS 133

Query: 63  PGFMFPNATS-SLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQ 121
           P F  PN  S S +KWRDY+L QA  FVAKNGT+IVCAVS PYLPFLNNWLIS+SRQKHQ
Sbjct: 134 PLFPSPNKLSPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQKHQ 193

Query: 122 DQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILE 181
           DQVLVIAEDYATLYKVN +WPGHAVL+PPA DSQTAHKFGSQGFFNFT+RRP HLL ILE
Sbjct: 194 DQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLEILE 253

Query: 182 LGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTLYSMT 225
           LGYNVMYNDVDMVWL+DPF YL+G HD YF DDM AV   +S T
Sbjct: 254 LGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAVCIFFSQT 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678839|ref|NP_849279.1| rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana] gi|7267619|emb|CAB80931.1| hypothetical protein [Arabidopsis thaliana] gi|193885155|gb|ACF28391.1| At4g01220 [Arabidopsis thaliana] gi|332656595|gb|AEE81995.1| rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 180/220 (81%), Gaps = 3/220 (1%)

Query: 3   QWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGT 62
           ++LHQRP+ NP  NP+  S   S +    RP + +L+R  LL+LL+LLV+LGV LPW G+
Sbjct: 5   KFLHQRPIQNPFTNPFSSS-PLSTSSISNRP-ISLLSRNGLLLLLALLVILGVFLPWAGS 62

Query: 63  PGFMFPNATS-SLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQ 121
           P F  PN  S S +KWRDY+L QA  FVAKNGT+IVCAVS PYLPFLNNWLIS+SRQKHQ
Sbjct: 63  PLFPSPNKLSPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQKHQ 122

Query: 122 DQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILE 181
           DQVLVIAEDYATLYKVN +WPGHAVL+PPA DSQTAHKFGSQGFFNFT+RRP HLL ILE
Sbjct: 123 DQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLEILE 182

Query: 182 LGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
           LGYNVMYNDVDMVWL+DPF YL+G HD YF DDM A++ L
Sbjct: 183 LGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPL 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810037|ref|XP_002872902.1| hypothetical protein ARALYDRAFT_912111 [Arabidopsis lyrata subsp. lyrata] gi|297318739|gb|EFH49161.1| hypothetical protein ARALYDRAFT_912111 [Arabidopsis lyrata subsp. lyrata]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 179/220 (81%), Gaps = 7/220 (3%)

Query: 3   QWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGT 62
           ++LHQRP+ NP       S   S +    RP+ L L+R  LL+LL+LLV+LGV LPW G+
Sbjct: 5   KFLHQRPIQNPF-----SSSPLSNSSISNRPISL-LSRNGLLILLALLVILGVFLPWAGS 58

Query: 63  PGFMFPNA-TSSLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQ 121
           P F FPN  +SS +KWRDY+L QA  FVAKNGT+IVCAVS PYLPFLNNWLIS+SRQKHQ
Sbjct: 59  PLFPFPNRLSSSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQKHQ 118

Query: 122 DQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILE 181
           DQVLVIAEDYATLYKVN +WPGHAVL+PPA DSQTAHKFGSQGFFNFT+RRP HLL ILE
Sbjct: 119 DQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLEILE 178

Query: 182 LGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
           LGYNVMYNDVDMVWL+DPF YL+G HD YF DDM A++ L
Sbjct: 179 LGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPL 218

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411573|ref|NP_567211.1| rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana] gi|57222150|gb|AAW38982.1| At4g01220 [Arabidopsis thaliana] gi|332656596|gb|AEE81996.1| rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 180/220 (81%), Gaps = 3/220 (1%)

Query: 3   QWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGT 62
           ++LHQRP+ NP  NP+  S   S +    RP + +L+R  LL+LL+LLV+LGV LPW G+
Sbjct: 5   KFLHQRPIQNPFTNPFSSS-PLSTSSISNRP-ISLLSRNGLLLLLALLVILGVFLPWAGS 62

Query: 63  PGFMFPNATS-SLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQ 121
           P F  PN  S S +KWRDY+L QA  FVAKNGT+IVCAVS PYLPFLNNWLIS+SRQKHQ
Sbjct: 63  PLFPSPNKLSPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQKHQ 122

Query: 122 DQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILE 181
           DQVLVIAEDYATLYKVN +WPGHAVL+PPA DSQTAHKFGSQGFFNFT+RRP HLL ILE
Sbjct: 123 DQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLEILE 182

Query: 182 LGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
           LGYNVMYNDVDMVWL+DPF YL+G HD YF DDM A++ L
Sbjct: 183 LGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPL 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13877593|gb|AAK43874.1|AF370497_1 unknown protein [Arabidopsis thaliana]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 180/220 (81%), Gaps = 3/220 (1%)

Query: 3   QWLHQRPLHNPLPNPYPLSPRNSMTFQFQRPMLLVLNRTTLLVLLSLLVVLGVILPWTGT 62
           ++LHQRP+ NP  NP+  S   S +    RP + +L+R  LL+LL+LLV+LGV LPW G+
Sbjct: 5   KFLHQRPIQNPFTNPFSSS-PLSTSSISNRP-ISLLSRNGLLLLLALLVILGVFLPWAGS 62

Query: 63  PGFMFPNATS-SLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQ 121
           P F  PN  S S +KWRDY+L QA  FVAKNGT+IVCAVS PYLPFLNNWLIS+SRQKHQ
Sbjct: 63  PLFPSPNKHSPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVSRQKHQ 122

Query: 122 DQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILE 181
           DQVLVIAEDYATLYKVN +WPGHAVL+PPA DSQTAHKFGSQGFFNFT+RRP HLL ILE
Sbjct: 123 DQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHLLEILE 182

Query: 182 LGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
           LGYNVMYNDVDMVWL+DPF YL+G HD YF DDM A++ L
Sbjct: 183 LGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPL 222

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2124968	360	MGP4 "male gametophyte defecti	0.716	0.455	0.793	6.1e-71
TAIR|locus:2133392	361	RGXT1 "rhamnogalacturonan xylo	0.716	0.454	0.758	8e-69
TAIR|locus:2133457	367	RGXT2 "rhamnogalacturonan xylo	0.716	0.446	0.702	9.4e-66
TAIR|locus:2027605	383	RGXT3 "RhamnoGalacturonan spec	0.716	0.428	0.728	2e-65
TAIR|locus:2026831	537	RAY1 "REDUCED ARABINOSE YARIV	0.537	0.229	0.289	3.7e-08
TAIR|locus:2119827	715	AT4G19970 "AT4G19970" [Arabido	0.541	0.173	0.282	8.6e-07
DICTYBASE|DDB_G0283005	648	agtA "UDP-Gal:fucoside alpha3-	0.572	0.202	0.263	5.6e-05
TAIR|locus:2058769	644	XEG113 "xyloglucanase 113" [Ar	0.585	0.208	0.278	0.00031
TAIR|locus:2156304	367	AT5G44820 "AT5G44820" [Arabido	0.541	0.337	0.244	0.00032
TAIR|locus:2037248	428	RRA2 "REDUCED RESIDUAL ARABINO	0.593	0.317	0.281	0.00041

TAIR|locus:2124968 MGP4 "male gametophyte defective 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 131/165 (79%), Positives = 143/165 (86%)

Query:    58 PWTGTPGFMFPNATS-SLAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISIS 116
             PW G+P F  PN  S S +KWRDY+L QA  FVAKNGT+IVCAVS PYLPFLNNWLIS+S
Sbjct:    58 PWAGSPLFPSPNKLSPSQSKWRDYSLPQAVKFVAKNGTVIVCAVSYPYLPFLNNWLISVS 117

Query:   117 RQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHL 176
             RQKHQDQVLVIAEDYATLYKVN +WPGHAVL+PPA DSQTAHKFGSQGFFNFT+RRP HL
Sbjct:   118 RQKHQDQVLVIAEDYATLYKVNEKWPGHAVLIPPALDSQTAHKFGSQGFFNFTARRPQHL 177

Query:   177 LHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
             L ILELGYNVMYNDVDMVWL+DPF YL+G HD YF DDM A++ L
Sbjct:   178 LEILELGYNVMYNDVDMVWLQDPFQYLEGKHDAYFMDDMTAIKPL 222

GO:0009507 "chloroplast" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010306 "rhamnogalacturonan II biosynthetic process" evidence=IMP

GO:0042285 "xylosyltransferase activity" evidence=IDA

GO:0048868 "pollen tube development" evidence=IMP

TAIR|locus:2133392 RGXT1 "rhamnogalacturonan xylosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 129/170 (75%), Positives = 146/170 (85%)

Query:    58 PWTGTPGFMFPNA-TSSLA-----KWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFLNNW 111
             PW G+P F+FPN  +SSL+     KWRDYTL+QAA FVAKNGT+IVCAVS P+LPFLNNW
Sbjct:    52 PWPGSPLFLFPNRLSSSLSPSPQSKWRDYTLAQAARFVAKNGTVIVCAVSSPFLPFLNNW 111

Query:   112 LISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSR 171
             LIS+SRQKHQD+VLVIAEDY TLYKVN +WPGHAVL+PPA DS+TA  FGSQGFFNFT+R
Sbjct:   112 LISVSRQKHQDKVLVIAEDYITLYKVNEKWPGHAVLIPPALDSKTAFSFGSQGFFNFTAR 171

Query:   172 RPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
             RP HLL ILELGYNVMYNDVDMVWL+DPF YL+G HD YFTDDM  ++ L
Sbjct:   172 RPQHLLQILELGYNVMYNDVDMVWLQDPFLYLEGSHDAYFTDDMPQIKPL 221

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010306 "rhamnogalacturonan II biosynthetic process" evidence=IMP

GO:0035252 "UDP-xylosyltransferase activity" evidence=IDA

TAIR|locus:2133457 RGXT2 "rhamnogalacturonan xylosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 123/175 (70%), Positives = 143/175 (81%)

Query:    58 PWTGTPGFMFPNATSS-----------LAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLP 106
             PW G+P  +FPN  SS            ++WR+YTL+QAA FVA NGT+IVCAVS P+LP
Sbjct:    53 PWPGSPLLLFPNKVSSPSYASSLSPHAKSEWRNYTLAQAAKFVATNGTVIVCAVSSPFLP 112

Query:   107 FLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFF 166
             FLNNWLIS+SRQKHQ++VLVIAEDY TLYKVN +WPGHAVL+PPA DS+TA+ FGSQGFF
Sbjct:   113 FLNNWLISVSRQKHQEKVLVIAEDYITLYKVNEKWPGHAVLIPPALDSKTAYSFGSQGFF 172

Query:   167 NFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
             NFT+RRP HLL ILELGYNVMYNDVDMVWL+DPF YL+G HD YFTDDM  ++ L
Sbjct:   173 NFTARRPQHLLQILELGYNVMYNDVDMVWLQDPFQYLEGSHDAYFTDDMPQIKPL 227

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010306 "rhamnogalacturonan II biosynthetic process" evidence=IMP

GO:0035252 "UDP-xylosyltransferase activity" evidence=IDA

TAIR|locus:2027605 RGXT3 "RhamnoGalacturonan specific Xylosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 126/173 (72%), Positives = 143/173 (82%)

Query:    58 PWTGTPGFMFPNATSS---------LAKWRDYTLSQAASFVAKNGTIIVCAVSQPYLPFL 108
             P T +  FMFPN TSS         ++ WRDY+L+QA  FVAKN T+IVCAVS P+LPFL
Sbjct:    39 PLTKSSLFMFPNTTSSSLSPSSSLSVSDWRDYSLAQAVKFVAKNETVIVCAVSYPFLPFL 98

Query:   109 NNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNF 168
             NNWLISISRQKHQ++VLVIAEDYATLYKVN +WPGHAVL+PPA D Q+AHKFGSQGFFN 
Sbjct:    99 NNWLISISRQKHQEKVLVIAEDYATLYKVNEKWPGHAVLIPPALDPQSAHKFGSQGFFNL 158

Query:   169 TSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQGDHDVYFTDDMAAVRTL 221
             TSRRP HLL+ILELGYNVMYNDVDMVWL+DPF YLQG +D YF DDM A++ L
Sbjct:   159 TSRRPQHLLNILELGYNVMYNDVDMVWLQDPFDYLQGSYDAYFMDDMIAIKPL 211

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0035252 "UDP-xylosyltransferase activity" evidence=IDA

TAIR|locus:2026831 RAY1 "REDUCED ARABINOSE YARIV 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 37/128 (28%), Positives = 62/128 (48%)

Query:    80 YTLSQAASFVA-KNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVN 138
             + L      VA KN T+++      Y   L +W+  + R K  + ++   +D    + + 
Sbjct:   259 FDLESLLPLVADKNRTVVLSVAGYSYKDMLMSWVCRLRRLKVPNFLVCALDDETYQFSIL 318

Query:   139 GRWPGHAVLVPPAPDSQTAHK--FGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWL 196
                P      P AP + + +   FGS+ F   T  +   +L IL+LGYNV+ +DVD+ W 
Sbjct:   319 QGLP--VFFDPYAPKNISFNDCHFGSKCFQRVTKVKSRTVLKILKLGYNVLLSDVDVYWF 376

Query:   197 KDPFPYLQ 204
             ++P P LQ
Sbjct:   377 RNPLPLLQ 384

GO:0005737 "cytoplasm" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IDA

GO:0042546 "cell wall biogenesis" evidence=IMP

TAIR|locus:2119827 AT4G19970 "AT4G19970" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
 Identities = 37/131 (28%), Positives = 58/131 (44%)

Query:    91 KNGTIIVCAVSQPYL-P------FLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143
             +N T+IV  ++Q +  P      FL ++ I    +K    V+V+  D     + +   P 
Sbjct:   452 ENRTVIVTTLNQAWAEPNSLFDLFLESFRIGQGTKKLLQHVVVVCLDSKAFARCSQLHPN 511

Query:   144 HAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYL 203
                L     D      F +  +     RR   L  +LE+GYN ++ D D++WL+DPFP L
Sbjct:   512 CYYLKTTGTDFSGEKLFATPDYLKMMWRRIELLTQVLEMGYNFIFTDADIMWLRDPFPRL 571

Query:   204 QGDHDVYFTDD 214
               D D     D
Sbjct:   572 YPDGDFQMACD 582

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0283005 agtA "UDP-Gal:fucoside alpha3-galactosyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 120 (47.3 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 38/144 (26%), Positives = 64/144 (44%)

Query:    77 WRDYTLSQAASF----VAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYA 132
             +RD TL+    F    + K+  I+ C   + Y  F     I   R   +D ++  +    
Sbjct:    22 FRDMTLNLLKCFEKLSIDKSRYILYCMDDKAYQFFAEFKGIECQRFS-RDDIINSSTSST 80

Query:   133 TLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVD 192
              L+  N       +       S+ A  +G  GF    + +P  +L +L+ GYNV++ D D
Sbjct:    81 QLFHDNNTNDNKGIY------SENAESYGDIGFRAICNEKPLVVLDVLKKGYNVLWTDTD 134

Query:   193 MVWLKDPFPYLQGD--HDVYFTDD 214
             +VW +DPF +   D   +  FT+D
Sbjct:   135 IVWKRDPFIHFYQDINQENQFTND 158

GO:0035250 "UDP-galactosyltransferase activity" evidence=IDA

GO:0006486 "protein glycosylation" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;TAS

GO:0004381 "fucosylgalactoside 3-alpha-galactosyltransferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

TAIR|locus:2058769 XEG113 "xyloglucanase 113" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00031, P = 0.00031
 Identities = 39/140 (27%), Positives = 62/140 (44%)

Query:    91 KNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGHAVLVPP 150
             K+  IIV   +  ++ F+  W+  ++       +LV A D   L  +   W G  V    
Sbjct:   130 KDNVIIVTFGNYAFMDFILTWVKHLT-DLDLSNILVGAMDTKLLEALY--WKGVPVFDMG 186

Query:   151 APDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYLQG--DHD 208
             +  S     +GS  F      +   +  +L  GY ++  D DMVWLK+P PYL    D D
Sbjct:   187 SHMSTVDVGWGSPTFHKMGREKVILIDSVLPFGYELLMCDTDMVWLKNPMPYLARFPDAD 246

Query:   209 VYFTDDMAAVRTLYSMTLEL 228
             V  + D   V T+   +L++
Sbjct:   247 VLTSSDQV-VPTVIDDSLDI 265

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006486 "protein glycosylation" evidence=IMP

GO:0052325 "cell wall pectin biosynthetic process" evidence=IMP

GO:0052636 "arabinosyltransferase activity" evidence=IMP

GO:0080147 "root hair cell development" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2156304 AT5G44820 "AT5G44820" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00032, P = 0.00032
 Identities = 32/131 (24%), Positives = 56/131 (42%)

Query:    91 KNGTIIVCAVSQPYL-P------FLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG 143
             KN T+I+  ++Q +  P      FL ++ I    Q+    V+V+  D     + +     
Sbjct:   102 KNNTVIITTLNQAWAEPNSLFDLFLESFRIGQGTQQLLKHVVVVCLDIKAFERCSQLHTN 161

Query:   144 HAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKDPFPYL 203
                +     D      + +  +      R   L  +LE+G+N ++ D D++WL+DPFP L
Sbjct:   162 CYHIETSETDFSGEKVYNTPDYLKMMWARIDLLTQVLEMGFNFIFTDADIMWLRDPFPRL 221

Query:   204 QGDHDVYFTDD 214
               D D     D
Sbjct:   222 YPDGDFQMACD 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2037248 RRA2 "REDUCED RESIDUAL ARABINOSE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00041, P = 0.00041
 Identities = 40/142 (28%), Positives = 63/142 (44%)

Query:    82 LSQAASFVAKNGTIIVCAVSQPYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRW 141
             L++    VA N  IIV   +    P L   + S+ R   Q+ ++V  +D    +  +   
Sbjct:   146 LAKLLEKVAVNKEIIVVLANSNVKPMLELQIASVKRVGIQNYLIVALDDSMESFCESKE- 204

Query:   142 PGHAVLVPPAPDSQTAHKFGSQGFFNFTSRRPCHLLH-ILELGYNVMYNDVDMVWLKDPF 200
                 V     PD +     G  G  +  S     +L   L+LGY+V+ +DVD+V+L++PF
Sbjct:   205 ---VVFYKRDPD-KAVDMVGKSGGNHAVSGLKFRVLREFLQLGYSVLLSDVDIVFLQNPF 260

Query:   201 PYLQGDHDVYFTDDMAAVRTLY 222
              +L  D DV    D     T Y
Sbjct:   261 SHLHRDSDVESMSDGHDNNTAY 282


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.446    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      229       190   0.00091  110 3  11 22  0.39    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.41u 0.15s 16.56t   Elapsed:  00:00:00
  Total cpu time:  16.41u 0.15s 16.56t   Elapsed:  00:00:00
  Start:  Mon May 20 19:41:30 2013   End:  Mon May 20 19:41:30 2013

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0080147 "root hair cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026957001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (361 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00029320001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (463 aa)							•		0.415
	GSVIVG00024554001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (931 aa)							•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam03407	208	pfam03407, Nucleotid_trans, Nucleotide-diphospho-s	2e-22

>gnl|CDD|217539 pfam03407, Nucleotid_trans, Nucleotide-diphospho-sugar transferase

 Score = 90.8 bits (226), Expect = 2e-22
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 119 KHQDQVLVIAEDYATLYKVNGRWPGHAVLVPPAPD-SQTAHKFGSQGFFNFTSRRPCHLL 177
              + +LV+A D     +     P    L+    D S+    FGS+ +   + RR   LL
Sbjct: 1   GLLENLLVVALDEEAYKRCKELGPHICYLLSDVKDVSKKDFVFGSKTYLKMSWRRVRLLL 60

Query: 178 HILELGYNVMYNDVDMVWLKDPFPYLQ-GDHDVYFTDDM 215
            +LELGYN +++DVD+VWL++PFP L   D D+  + D 
Sbjct: 61  ELLELGYNFIFSDVDVVWLRNPFPLLYLPDADIIISSDN 99

Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases. Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PF03407	212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	99.85
cd04194	248	GT8_A4GalT_like A4GalT_like proteins catalyze the	93.25
cd02537	240	GT8_Glycogenin Glycogenin belongs the GT 8 family	92.77
PLN00176	333	galactinol synthase	92.71
cd08579	220	GDPD_memb_like Glycerophosphodiester phosphodieste	87.86
PF01501	250	Glyco_transf_8: Glycosyl transferase family 8; Int	87.37
cd00505	246	Glyco_transf_8 Members of glycosyltransferase fami	80.85
cd08563	230	GDPD_TtGDE_like Glycerophosphodiester phosphodiest	80.46

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []

Probab=99.85  E-value=6.1e-21  Score=162.52  Aligned_cols=102  Identities=34%  Similarity=0.579  Sum_probs=89.6

Q ss_pred             CCCcEEEEEecHHHHHHHhcCCCceeEecCC-CCCCcccccccchhHHHHHhhhhHHHHHHHHcCCcEEEeecceeeecC
Q 027009          120 HQDQVLVIAEDYATLYKVNGRWPGHAVLVPP-APDSQTAHKFGSQGFFNFTSRRPCHLLHILELGYNVMYNDVDMVWLKD  198 (229)
Q Consensus       120 ~~~nvLVvAlD~~t~~~~~~~~pg~~vl~~~-~~d~~~~~~~gs~~F~~m~~~K~~~l~~vLelGy~VL~sDvDvVWLrD  198 (229)
                      +++|++|+|+|+++++.|++.++.|+.+... .....+...+|++.|.+++|.|+.+++++|++||+|+++|+|+||+||
T Consensus         2 ~~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~d   81 (212)
T PF03407_consen    2 LIDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRD   81 (212)
T ss_pred             ccccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecC
Confidence            5799999999999999999887776665433 233456789999999999999999999999999999999999999999


Q ss_pred             Ccccc-CCCCceEEeccCcccCCC
Q 027009          199 PFPYL-QGDHDVYFTDDMAAVRTL  221 (229)
Q Consensus       199 P~p~f-~~~aDi~~~sD~~~~~p~  221 (229)
                      |+++| .+++|+++|+|+..+...
T Consensus        82 p~~~~~~~~~Di~~~~d~~~~~~~  105 (212)
T PF03407_consen   82 PLPYFENPDADILFSSDGWDGTNS  105 (212)
T ss_pred             cHHhhccCCCceEEecCCCcccch
Confidence            99999 789999999998876544

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface

Probab=93.25  E-value=0.39  Score=41.61  Aligned_cols=118  Identities=19%  Similarity=0.234  Sum_probs=67.9

Q ss_pred             EEEEeCcchHHHHHHHHHHhhhccC--CCcEEEEEec--HHHHHHHhcCCC--ceeE-ecC-CCCCCcccccccchhHHH
Q 027009           96 IVCAVSQPYLPFLNNWLISISRQKH--QDQVLVIAED--YATLYKVNGRWP--GHAV-LVP-PAPDSQTAHKFGSQGFFN  167 (229)
Q Consensus        96 IVt~~N~ay~dfl~Nwl~sl~r~g~--~~nvLVvAlD--~~t~~~~~~~~p--g~~v-l~~-~~~d~~~~~~~gs~~F~~  167 (229)
                      |+.++|..|+.-+..-+.|+.+..-  .-++.|++.|  ++..+.+++...  ++.+ +.+ +...... .......|..
T Consensus         3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~-~~~~~~~~~~   81 (248)
T cd04194           3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKF-FPATTDHISY   81 (248)
T ss_pred             EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhc-CCcccccccH
Confidence            6888999999988888888877432  3456666654  455666654211  2221 111 0000000 0002223334


Q ss_pred             HHhhhhHHHHHHHHcCCc-EEEeecceeeecCCccccCC---CCceEEeccCc
Q 027009          168 FTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMA  216 (229)
Q Consensus       168 m~~~K~~~l~~vLelGy~-VL~sDvDvVWLrDP~p~f~~---~aDi~~~sD~~  216 (229)
                      ++-.|.. +-.++. +|+ |||.|+|++-++|.-+.+..   +.-+.+..|+.
T Consensus        82 ~~y~rl~-l~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~  132 (248)
T cd04194          82 ATYYRLL-IPDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPF  132 (248)
T ss_pred             HHHHHHH-HHHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEeccc
Confidence            4444433 345555 675 99999999999999988875   33344455544

The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

Probab=92.77  E-value=1.1  Score=39.08  Aligned_cols=113  Identities=14%  Similarity=0.062  Sum_probs=65.8

Q ss_pred             EEE-eCcchHHHHHHHHHHhhhccCCCcEEEEEec---HHHHHHHhcCCCceeEecCCCCCCcccccccchhHHHHHhhh
Q 027009           97 VCA-VSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSRR  172 (229)
Q Consensus        97 Vt~-~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD---~~t~~~~~~~~pg~~vl~~~~~d~~~~~~~gs~~F~~m~~~K  172 (229)
                      ||+ +|.+|+.-+.--+.|+++.+-..+++|+..+   ++..+.+++........ +. .+...........+.+-++.|
T Consensus         4 ~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~~~~~v-~~-i~~~~~~~~~~~~~~~~~~~k   81 (240)
T cd02537           4 VTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREV-EP-IDPPDSANLLKRPRFKDTYTK   81 (240)
T ss_pred             EEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEec-Cc-cCCcchhhhccchHHHHHhHH
Confidence            444 5669999888888999887544566555433   44556666542211111 11 111111111223455667777


Q ss_pred             hHHHHHHHHcCC-cEEEeecceeeecCCccccCCCCceEEecc
Q 027009          173 PCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHDVYFTDD  214 (229)
Q Consensus       173 ~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~~aDi~~~sD  214 (229)
                      ..+.. +  .+| .|||.|+|++-++|.-+.|..+..+....|
T Consensus        82 l~~~~-l--~~~drvlylD~D~~v~~~i~~Lf~~~~~~~a~~d  121 (240)
T cd02537          82 LRLWN-L--TEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPD  121 (240)
T ss_pred             HHhcc-c--cccceEEEEeCCeeEccCHHHHhCCCCceeeecc
Confidence            55544 2  256 499999999999999998876333433333

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.

>PLN00176 galactinol synthase

Probab=92.71  E-value=1.1  Score=41.95  Aligned_cols=119  Identities=13%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             cCCeEEEE--EeCcchHHHHHHHHHHhhhccCCCcEEEEEecH---HHHHHHhcCCCceeEec-CCCCCCcccccccchh
Q 027009           91 KNGTIIVC--AVSQPYLPFLNNWLISISRQKHQDQVLVIAEDY---ATLYKVNGRWPGHAVLV-PPAPDSQTAHKFGSQG  164 (229)
Q Consensus        91 ~n~tVIVt--~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~---~t~~~~~~~~pg~~vl~-~~~~d~~~~~~~gs~~  164 (229)
                      ..+...||  ++|..|..=+.-...|+++.+-...++|+..++   +..+.+++.  ||.+.. ...........+.. .
T Consensus        20 ~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~--g~~V~~V~~i~~~~~~~~~~~-~   96 (333)
T PLN00176         20 PAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQ--GCIVREIEPVYPPENQTQFAM-A   96 (333)
T ss_pred             cCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEecccCCccccccccc-c
Confidence            45677777  467899999999999999987777777777665   345555543  343321 11111111122322 2


Q ss_pred             HHHHHhhhhHHHHHHHHcCC-cEEEeecceeeecCCccccCCCCc-eEEeccC
Q 027009          165 FFNFTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDHD-VYFTDDM  215 (229)
Q Consensus       165 F~~m~~~K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~~aD-i~~~sD~  215 (229)
                      +..+.+.|.++.. +.  .| .|+|.|+|++-++|--+.|.-..+ +..-.|+
T Consensus        97 ~~~i~~tKl~iw~-l~--~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc  146 (333)
T PLN00176         97 YYVINYSKLRIWE-FV--EYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDC  146 (333)
T ss_pred             hhhhhhhhhhhcc-cc--ccceEEEecCCEEeecChHHHhcCCCcceEEEecc
Confidence            3445555666433 22  36 499999999999999888875322 4444454

>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

Probab=87.86  E-value=13  Score=31.65  Aligned_cols=67  Identities=12%  Similarity=0.093  Sum_probs=47.0

Q ss_pred             CCchHHHHHHhhccCC-eEEEEEeCc--chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009           78 RDYTLSQAASFVAKNG-TIIVCAVSQ--PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH  144 (229)
Q Consensus        78 ~~~~L~~lL~~vA~n~-tVIVt~~N~--ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~  144 (229)
                      +.++|+|+++.....+ .+.+=.=..  ....++..-+.-+++.+..++++|...|.+..+.+++..|..
T Consensus        81 ~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~  150 (220)
T cd08579          81 KIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKI  150 (220)
T ss_pred             cCCCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCC
Confidence            4679999999876533 344333222  234466666666777777789999999999999998766763

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=87.37  E-value=2.1  Score=35.98  Aligned_cols=107  Identities=18%  Similarity=0.139  Sum_probs=59.5

Q ss_pred             EEEEeCcchHHHHHHHHHHhhhccCC-CcEEEE-Eec---HHHHHHHhcCCCc---ee-EecCCCCCC--cccccccchh
Q 027009           96 IVCAVSQPYLPFLNNWLISISRQKHQ-DQVLVI-AED---YATLYKVNGRWPG---HA-VLVPPAPDS--QTAHKFGSQG  164 (229)
Q Consensus        96 IVt~~N~ay~dfl~Nwl~sl~r~g~~-~nvLVv-AlD---~~t~~~~~~~~pg---~~-vl~~~~~d~--~~~~~~gs~~  164 (229)
                      |+.++|..|+.-+..-+.|+.+.... .++.+. ..|   ++..+.+++....   .. .........  ..........
T Consensus         2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (250)
T PF01501_consen    2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRH   81 (250)
T ss_dssp             EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTC
T ss_pred             EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccc
Confidence            78889999999999999999886432 344222 222   2344444432111   11 111110000  0112223334


Q ss_pred             HHHHHhhhhHHHHHHHHcCCc-EEEeecceeeecCCccccC
Q 027009          165 FFNFTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQ  204 (229)
Q Consensus       165 F~~m~~~K~~~l~~vLelGy~-VL~sDvDvVWLrDP~p~f~  204 (229)
                      +..++..|..+-. ++ .+|+ |||.|+|++-++|.-+.|.
T Consensus        82 ~~~~~~~rl~i~~-ll-~~~drilyLD~D~lv~~dl~~lf~  120 (250)
T PF01501_consen   82 FSPATFARLFIPD-LL-PDYDRILYLDADTLVLGDLDELFD  120 (250)
T ss_dssp             GGGGGGGGGGHHH-HS-TTSSEEEEE-TTEEESS-SHHHHC
T ss_pred             ccHHHHHHhhhHH-HH-hhcCeEEEEcCCeeeecChhhhhc
Confidence            5566667764444 44 5665 9999999999999998887

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis

Probab=80.85  E-value=14  Score=32.00  Aligned_cols=118  Identities=18%  Similarity=0.201  Sum_probs=64.0

Q ss_pred             EEEEEeCcchHHHHHHHHHHhhhccC-CCcEEEEEec--HHHHHHHhcCC--Ccee-EecC-CCCCCcccccccchhHHH
Q 027009           95 IIVCAVSQPYLPFLNNWLISISRQKH-QDQVLVIAED--YATLYKVNGRW--PGHA-VLVP-PAPDSQTAHKFGSQGFFN  167 (229)
Q Consensus        95 VIVt~~N~ay~dfl~Nwl~sl~r~g~-~~nvLVvAlD--~~t~~~~~~~~--pg~~-vl~~-~~~d~~~~~~~gs~~F~~  167 (229)
                      +++++++..|+..+.--+.|+.+... .-++.|+..|  ++..+.+.+..  .++. .+.+ +...... .....+.+..
T Consensus         3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~   81 (246)
T cd00505           3 IVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD-SEHLKRPIKI   81 (246)
T ss_pred             EEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch-hhhhcCcccc
Confidence            45666777999988888888876532 3456666544  23344444321  1222 2222 1111100 0000111222


Q ss_pred             HHhhhhHHHHHHHHcCCc-EEEeecceeeecCCccccCCC---CceEEeccC
Q 027009          168 FTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQGD---HDVYFTDDM  215 (229)
Q Consensus       168 m~~~K~~~l~~vLelGy~-VL~sDvDvVWLrDP~p~f~~~---aDi~~~sD~  215 (229)
                      .+..|. ++-+++. +++ |||.|+|++-++|.-+.+.-+   .-+.+..|+
T Consensus        82 ~~y~RL-~i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~  131 (246)
T cd00505          82 VTLTKL-HLPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDP  131 (246)
T ss_pred             ceeHHH-HHHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCc
Confidence            233333 3556677 785 999999999999999888642   444444454

Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.

>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins

Probab=80.46  E-value=36  Score=29.11  Aligned_cols=66  Identities=12%  Similarity=0.120  Sum_probs=46.6

Q ss_pred             CCchHHHHHHhhccCCe-EEEEEeCc--chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCc
Q 027009           78 RDYTLSQAASFVAKNGT-IIVCAVSQ--PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPG  143 (229)
Q Consensus        78 ~~~~L~~lL~~vA~n~t-VIVt~~N~--ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg  143 (229)
                      +.++|+|+++.....+. +++=.=+.  .+..+.+.-+.-+++.+..+++++...|.++.+++++..|.
T Consensus        87 ~iptL~evl~~~~~~~~~l~leiK~~~~~~~~~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~  155 (230)
T cd08563          87 KIPTLEEVLDLLKDKDLLLNIEIKTDVIHYPGIEKKVLELVKEYNLEDRVIFSSFNHESLKRLKKLDPK  155 (230)
T ss_pred             cCCCHHHHHHHHHhcCcEEEEEECCCCCcChhHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCC
Confidence            46799999998774444 33332222  23456666666677777788999999999999999987675

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
1ll2_A	333	Glycogenin-1; protein-substrate complex, beta-alph	94.46
3u2u_A	263	Glycogenin-1, GN-1, GN1; structural genomics, stru	90.87
3ks6_A	250	Glycerophosphoryl diester phosphodiesterase; struc	87.77
3tzt_A	276	Glycosyl transferase family 8; structural genomics	86.11
1g9r_A	311	Glycosyl transferase; alpha-beta structure; HET: U	85.17
2pz0_A	252	Glycerophosphoryl diester phosphodiesterase; glyce	81.11

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*

Probab=94.46  E-value=0.099  Score=46.89  Aligned_cols=106  Identities=8%  Similarity=0.048  Sum_probs=61.2

Q ss_pred             EEEeCcchHHHHHHHHHHhhhccCCCcEEEEEec---HHHHHHHhcCCCceeEecCCCCC-CcccccccchhHHHHHhhh
Q 027009           97 VCAVSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPD-SQTAHKFGSQGFFNFTSRR  172 (229)
Q Consensus        97 Vt~~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD---~~t~~~~~~~~pg~~vl~~~~~d-~~~~~~~gs~~F~~m~~~K  172 (229)
                      +.++|.+|+.-+.--+.|+++.+-...++|+..|   ++..+.+++.... ......... ...............++.|
T Consensus         8 t~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~-v~~v~~l~~~~~~~~~~~~~~~~~~t~~K   86 (333)
T 1ll2_A            8 TLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE-VITVDILDSGDSAHLTLMKRPELGVTLTK   86 (333)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSE-EEECCTTSTTSTTHHHHHHCGGGHHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCE-EEEEeecCCcchhhcccccccchHHHHHH
Confidence            3346899999999999999887656666666554   4555666654221 111111110 0010000001111344555


Q ss_pred             hHHHHHHHHcCC-cEEEeecceeeecCCccccCCC
Q 027009          173 PCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGD  206 (229)
Q Consensus       173 ~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~~  206 (229)
                      ..+.. +  ..| .|||.|+|++.++|+-+.|.-+
T Consensus        87 l~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~  118 (333)
T 1ll2_A           87 LHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE  118 (333)
T ss_dssp             GGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC
T ss_pred             HHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC
Confidence            54443 2  345 4999999999999999988754

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A

Probab=90.87  E-value=0.8  Score=39.80  Aligned_cols=114  Identities=12%  Similarity=0.123  Sum_probs=65.9

Q ss_pred             eEEEEE-eCcchHHHHHHHHHHhhhccCCCcEEEEEe---cHHHHHHHhcCCCceeEecCCCCCCcc--cc-cccchhHH
Q 027009           94 TIIVCA-VSQPYLPFLNNWLISISRQKHQDQVLVIAE---DYATLYKVNGRWPGHAVLVPPAPDSQT--AH-KFGSQGFF  166 (229)
Q Consensus        94 tVIVt~-~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAl---D~~t~~~~~~~~pg~~vl~~~~~d~~~--~~-~~gs~~F~  166 (229)
                      ...||. +|.+|+.-+.--+.|+++.+-...++|+..   +++..+.+++..  +.+..-+..+...  .. ..+...| 
T Consensus         5 ~AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~--~~vi~V~~l~~~~~~~~~~~~rp~~-   81 (263)
T 3u2u_A            5 QAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVF--DEVIMVDVLDSGDSAHLTLMKRPEL-   81 (263)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHS--SEEEECCCCCCCCHHHHHHTTCTTG-
T ss_pred             eEEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcC--CeEEEeeecCCcchhhhhhhcCcch-
Confidence            344444 588999999999999998765555655543   345566666542  2222111111110  00 0111222 


Q ss_pred             HHHhhhhHHHHHHHHcCCc-EEEeecceeeecCCccccCCCCceEEecc
Q 027009          167 NFTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQGDHDVYFTDD  214 (229)
Q Consensus       167 ~m~~~K~~~l~~vLelGy~-VL~sDvDvVWLrDP~p~f~~~aDi~~~sD  214 (229)
                      ..++.|..+.. ++  .|+ |+|.|+|++.++|.-+.|..+ .+....|
T Consensus        82 ~~~~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d  126 (263)
T 3u2u_A           82 GVTLTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPD  126 (263)
T ss_dssp             GGGGGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEEC
T ss_pred             hHHhHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCCC-cceEecc
Confidence            34555655443 22  464 999999999999998888765 3444344

>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*

Probab=87.77  E-value=5.4  Score=33.59  Aligned_cols=67  Identities=12%  Similarity=0.167  Sum_probs=47.7

Q ss_pred             CCchHHHHHHhhccCCeEEEEEeCc-----chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009           78 RDYTLSQAASFVAKNGTIIVCAVSQ-----PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH  144 (229)
Q Consensus        78 ~~~~L~~lL~~vA~n~tVIVt~~N~-----ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~  144 (229)
                      +.++|+|+|+.+...+..+..=.-.     .+..+.+.-++-+++.+..+++++...|.++++++++..|..
T Consensus        84 ~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~SF~~~~l~~~~~~~p~~  155 (250)
T 3ks6_A           84 HPMTLEELCALYVDSHVNFRCEIKPGVDGLPYEGFVALVIAGLERHSMLERTTFSSFLLASMDELWKATTRP  155 (250)
T ss_dssp             CCEEHHHHHHHHTTCSCEEEEEECCCTTSCCCTTHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCCSC
T ss_pred             cCcCHHHHHHHHhccCcEEEEEeCCCcccCcchHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCC
Confidence            5789999999987444333322211     234566666666777777889999999999999998876763

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0

Probab=86.11  E-value=2.4  Score=36.54  Aligned_cols=118  Identities=13%  Similarity=0.064  Sum_probs=61.6

Q ss_pred             EEEEeCcchHHHHHHHHHHhhhccCCCcE--EEEEec--HHHHHHHhcC--CCceeE-ecC-CCCCCcccccccchhHHH
Q 027009           96 IVCAVSQPYLPFLNNWLISISRQKHQDQV--LVIAED--YATLYKVNGR--WPGHAV-LVP-PAPDSQTAHKFGSQGFFN  167 (229)
Q Consensus        96 IVt~~N~ay~dfl~Nwl~sl~r~g~~~nv--LVvAlD--~~t~~~~~~~--~pg~~v-l~~-~~~d~~~~~~~gs~~F~~  167 (229)
                      |+.++|..|...+..-+.|+.+.+-..++  .|+..|  ++..+.+.+.  ..++.+ +.. ........  -.+..|..
T Consensus         8 I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~s~   85 (276)
T 3tzt_A            8 LLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFA--KVTDRYPK   85 (276)
T ss_dssp             EEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC---------------CH
T ss_pred             EEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcC--ccccccCH
Confidence            67889999999999999999776432333  344433  4444444432  123322 111 10000000  00111222


Q ss_pred             HHhhhhHHHHHHHHcCC-cEEEeecceeeecCCccccCC---CCceEEeccCc
Q 027009          168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDMA  216 (229)
Q Consensus       168 m~~~K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~---~aDi~~~sD~~  216 (229)
                      .+..|. ++-+++...+ .|||.|+|++.++|.-+.+.-   +.-+.+..|+.
T Consensus        86 ~~~~rl-~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~  137 (276)
T 3tzt_A           86 EMYYRL-LAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTG  137 (276)
T ss_dssp             HHHHHH-THHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--
T ss_pred             HHHHHH-HHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecc
Confidence            222332 2334554455 599999999999999988874   33455555643

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*

Probab=85.17  E-value=2.2  Score=37.10  Aligned_cols=117  Identities=18%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             EEEEeCcchHHHHHHHHHHh-hhcc-CCCcEEEEEec--HHHHHHHhcCCC--cee-EecC-CCCCCcccccccchhHHH
Q 027009           96 IVCAVSQPYLPFLNNWLISI-SRQK-HQDQVLVIAED--YATLYKVNGRWP--GHA-VLVP-PAPDSQTAHKFGSQGFFN  167 (229)
Q Consensus        96 IVt~~N~ay~dfl~Nwl~sl-~r~g-~~~nvLVvAlD--~~t~~~~~~~~p--g~~-vl~~-~~~d~~~~~~~gs~~F~~  167 (229)
                      |+.++|..|+..+...+.|+ .+.. ..-++.|++.|  ++..+.+.+...  ++. .+.. .......... ....+..
T Consensus         3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~s~   81 (311)
T 1g9r_A            3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPL-NIRHISI   81 (311)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCC-CCTTCCG
T ss_pred             EEEECCHhHHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCcc-ccccCCH
Confidence            56778999999999999999 4332 22244555544  555555654211  221 1111 0000000000 0011112


Q ss_pred             HHhhhhHHHHHHHHcCC-cEEEeecceeeecCCccccCC---CCceEEeccC
Q 027009          168 FTSRRPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQG---DHDVYFTDDM  215 (229)
Q Consensus       168 m~~~K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~---~aDi~~~sD~  215 (229)
                      .+..|.. +-+++. .+ .|||.|+|+|-++|.-+.+.-   +.-+.+..|+
T Consensus        82 ~~y~Rl~-l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~  131 (311)
T 1g9r_A           82 TTYARLK-LGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDL  131 (311)
T ss_dssp             GGGGGGG-HHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECH
T ss_pred             HHHHHHH-HHHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEecc
Confidence            3334443 344453 44 499999999999999888864   3445544554

>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}

Probab=81.11  E-value=23  Score=29.56  Aligned_cols=67  Identities=15%  Similarity=0.135  Sum_probs=45.7

Q ss_pred             CCchHHHHHHhhccCCe-EEEEEeCc--chHHHHHHHHHHhhhccCCCcEEEEEecHHHHHHHhcCCCce
Q 027009           78 RDYTLSQAASFVAKNGT-IIVCAVSQ--PYLPFLNNWLISISRQKHQDQVLVIAEDYATLYKVNGRWPGH  144 (229)
Q Consensus        78 ~~~~L~~lL~~vA~n~t-VIVt~~N~--ay~dfl~Nwl~sl~r~g~~~nvLVvAlD~~t~~~~~~~~pg~  144 (229)
                      +-++|+|+|+.+...+. +.+=.=+.  .+..+...-++-+++.+..+++++...|.++.+++++..|..
T Consensus        98 ~iPtL~evL~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~vii~SF~~~~l~~~~~~~p~~  167 (252)
T 2pz0_A           98 RIPTLYEVFELIGDKDFLVNIEIKSGIVLYPGIEEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHL  167 (252)
T ss_dssp             CCCBHHHHHHHHTTSCCEEEEEECCSSCCCTTHHHHHHHHHHHTTCTTTEEEEESBHHHHHHHHHHCTTS
T ss_pred             cCCCHHHHHHHhhhcCCeEEEEeCCCCcccHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCC
Confidence            46899999998865443 33322221  233455555666666677788999999999999998866663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1ll2a_	263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	95.87
d1ga8a_	282	Galactosyltransferase LgtC {Neisseria meningitidis	95.12

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.87  E-value=0.015  Score=47.29  Aligned_cols=109  Identities=8%  Similarity=0.031  Sum_probs=64.3

Q ss_pred             EEEE-eCcchHHHHHHHHHHhhhccCCCcEEEEEec---HHHHHHHhcCCCceeEecCCCCCCcccccccchhHHHHHhh
Q 027009           96 IVCA-VSQPYLPFLNNWLISISRQKHQDQVLVIAED---YATLYKVNGRWPGHAVLVPPAPDSQTAHKFGSQGFFNFTSR  171 (229)
Q Consensus        96 IVt~-~N~ay~dfl~Nwl~sl~r~g~~~nvLVvAlD---~~t~~~~~~~~pg~~vl~~~~~d~~~~~~~gs~~F~~m~~~  171 (229)
                      .||. +|.+|+.-+...+.|+++.+-...++|+..+   ++..+.+++....+.....-..............+...+..
T Consensus         6 ~vt~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ty~   85 (263)
T d1ll2a_           6 FVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLT   85 (263)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGGHHHHH
T ss_pred             EEEEEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccchhhhH
Confidence            3444 6999999999999999998665566666543   55566666543222221111111111111112223334455


Q ss_pred             hhHHHHHHHHcCC-cEEEeecceeeecCCccccCCCC
Q 027009          172 RPCHLLHILELGY-NVMYNDVDMVWLKDPFPYLQGDH  207 (229)
Q Consensus       172 K~~~l~~vLelGy-~VL~sDvDvVWLrDP~p~f~~~a  207 (229)
                      |..+-. +  ..| .|+|.|+|++-++|+-+.|..+.
T Consensus        86 Kl~i~~-l--~~ydkvlYLDaD~lv~~~id~Lf~~~~  119 (263)
T d1ll2a_          86 KLHCWS-L--TQYSKCVFMDADTLVLANIDDLFEREE  119 (263)
T ss_dssp             HGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSCS
T ss_pred             HHHHhh-h--cccceEEEeCCCEEEecCHHHHhcCCc
Confidence            554433 2  245 49999999999999999997653

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=95.12  E-value=0.022  Score=46.72  Aligned_cols=118  Identities=19%  Similarity=0.170  Sum_probs=67.0

Q ss_pred             EEEEeCcchHHHHHHHHHHhhhccCCC--cEEEEEec--HHHHHHHhcCC--CceeE-ecCCC-CCCcccccccchhHHH
Q 027009           96 IVCAVSQPYLPFLNNWLISISRQKHQD--QVLVIAED--YATLYKVNGRW--PGHAV-LVPPA-PDSQTAHKFGSQGFFN  167 (229)
Q Consensus        96 IVt~~N~ay~dfl~Nwl~sl~r~g~~~--nvLVvAlD--~~t~~~~~~~~--pg~~v-l~~~~-~d~~~~~~~gs~~F~~  167 (229)
                      ||.++|..|++.+...+.|+.+.+...  ++.|+..+  ++..+.+.+..  .++.+ +.+-. ...... ....+.+..
T Consensus         3 Iv~~~D~nY~~~~~~~i~SL~~~~~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~s~   81 (282)
T d1ga8a_           3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGF-PLNIRHISI   81 (282)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHCTTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTTS-CCCCTTCCG
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHCcCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhccc-cccccccCH
Confidence            667799999999999999997753333  34444432  44455554421  11221 11100 000000 001112234


Q ss_pred             HHhhhhHHHHHHHHcCCc-EEEeecceeeecCCccccC---CCCceEEeccCc
Q 027009          168 FTSRRPCHLLHILELGYN-VMYNDVDMVWLKDPFPYLQ---GDHDVYFTDDMA  216 (229)
Q Consensus       168 m~~~K~~~l~~vLelGy~-VL~sDvDvVWLrDP~p~f~---~~aDi~~~sD~~  216 (229)
                      ++..|.. +-+++. +++ |||.|+|++-++|.-+.+.   ++.-+.+..|..
T Consensus        82 ~~y~Rl~-l~~~lp-~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~  132 (282)
T d1ga8a_          82 TTYARLK-LGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLF  132 (282)
T ss_dssp             GGGGGGG-HHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHH
T ss_pred             HHHHHHH-HhhhCC-ccceEEEecCCEEEecchHHHHhcccccceeeeehhhh
Confidence            4555643 556665 564 9999999999999988886   345566666643