Citrus Sinensis ID: 027018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSELPVQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccHHccccEEEEEccccccEEEEEEEEEEcccccEEEEEEEEEcccccccccEEccccEEEEEEcccccccccccccEEEEEEEEcccEEEEEEEEccccccccccccccEEEEEEEccccEEEEEEEccccEEccccEEcccccccccccEEEEEEEEEEcccccccccccccEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccHccHHHcEEEcccccccEEEEEEEEcccccccEEEEEEEEEEccccccccEEEcccEEEEEccccccccccccccEEEEEEEccccEEEEEEEcccccccccccccccEEEEEEcccccEEEEEEEHHccEEccccEEccccccccHHHEEEEEEEEEcccccccccccccccEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MSRFRGLWQASLNATKRALTWNleelmppseryifNFNSKEElkkwhlysdseygglssasleitesgngmngifsgnlsldlsegskwnisrsgfcgmrskkfdgfidldsYDTIAMKLkgdgrcyistiytenwvnspgqqednswqsfvfvpkdnwyiakiplarylptwrgnvidaememnpsrvVGMSLsvnaeggvpgaksgpgdfrVEVDWIKALRSELPVQ
Flexible Loop (DISEMBL)
msrfrglwqaslNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGgvpgaksgpgdfRVEVDWIKALRSELPVQ
Low Complexity Region (SEG)
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSELPVQ
Disordered region (IsUnstruct)
*****GLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGL************GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEM*****************************FRVEVDWIKA********
Disordered Region (DISOPRED)
**RFR**WQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKA*RS*****
Disordered Region (DISEMBL)
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSELPVQ
Disordered Region (DISPRO)
*SRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSELPVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q9LQI7	227	Probable complex I interm	yes	no	0.973	0.982	0.817	1e-108
Q9VAI1	296	Probable complex I interm	yes	no	0.772	0.597	0.278	1e-15
Q0MQ83	327	Complex I intermediate-as	N/A	no	0.890	0.623	0.234	2e-10
Q0MQ84	327	Complex I intermediate-as	yes	no	0.890	0.623	0.234	1e-09
O42636	278	Complex I intermediate-as	N/A	no	0.860	0.708	0.26	1e-09
Q9Y375	327	Complex I intermediate-as	yes	no	0.794	0.556	0.240	2e-09
Q0MQ82	327	Complex I intermediate-as	N/A	no	0.794	0.556	0.240	2e-09
Q9CWX2	328	Complex I intermediate-as	yes	no	0.781	0.545	0.265	1e-08
Q18726	340	Probable complex I interm	yes	no	0.733	0.494	0.245	2e-06
Q61FQ3	340	Probable complex I interm	N/A	no	0.733	0.494	0.25	1e-05

>sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2

 Score =  389 bits (999), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/225 (81%), Positives = 205/225 (91%), Gaps = 2/225 (0%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNG--MNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G    G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVI 178
           +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AKIPLARYLPTWRGNVI
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKIPLARYLPTWRGNVI 180

Query: 179 DAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALR 223
           D EMEMNP RV+GMSLSVNAEGG  GAKSG GDFRVE+DWIKALR
Sbjct: 181 DVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFRVEIDWIKALR 225

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30, mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 106/201 (52%), Gaps = 24/201 (11%)

Query: 28  PPSERYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
           P     +F+F + + L KW + +D+++G G S+A+LE++ +G G+   F G ++ D ++ 
Sbjct: 85  PGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGL---FHGQVNSDHTKD 141

Query: 87  SKWNISRSGFCGMRSK------KFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSP 140
               I R+G+  +R+K      K +   D   Y+ + MK++GDGR Y+  ++TE + +  
Sbjct: 142 G--IIKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFDLM 199

Query: 141 GQQEDNSWQSFVFVPK--DNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNA 198
                N    +V   +   +W IAKIP +++  + +G V D +  +  +RV     SV A
Sbjct: 200 W----NDIYHYVLYTRGGPHWQIAKIPFSKFFLSSKGRVQDRQGAIPLNRVTHFGFSVAA 255

Query: 199 EGGVPGAKSGPGDFRVEVDWI 219
           + G+ G       F +E+D++
Sbjct: 256 KKGMDGP------FGLEIDYV 270

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Drosophila melanogaster (taxid: 7227)

>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 105/226 (46%), Gaps = 22/226 (9%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           M  FR L    ++  +     +L E++    + ++ F  KE+L KW + SD   GG S  
Sbjct: 91  MYHFRHLKDEIVDHWRGPEGHSLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
            L++ +  N  + +  G LS +  +  +   +RSG+C M+S+   G        D   ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMKSRIPRGAFERKMSYDWSQFN 206

Query: 115 TIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTW 173
           T+ ++++GDGR ++  I  +       Q+ +  +  F+F      W   KIP +++  + 
Sbjct: 207 TLYLRVRGDGRPWMVNIKEDTDF---FQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSN 263

Query: 174 RGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWI 219
           RG + D + E+   ++  +  ++        A    G F +E+D+I
Sbjct: 264 RGRIRDVQHELPLDKISSIGFTL--------ADKVDGPFFLEIDFI 301

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan troglodytes GN=NDUFAF1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 22/226 (9%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           M  FR L    ++  +      L E++    + ++ F  KE+L KW + SD   GG S  
Sbjct: 91  MYHFRHLKDEIVDHWRGPEGHPLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
            L++ +  N  + +  G LS +  +  +   +RSG+C M S+   G        D   ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFN 206

Query: 115 TIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTW 173
           T+ ++++GDGR ++  I  +       Q+ +  +  F+F      W   KIP +++  + 
Sbjct: 207 TLYLRVRGDGRPWMVNIKEDTDFF---QRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSN 263

Query: 174 RGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWI 219
           RG + D + E+   ++  +  ++        A    G F +E+D+I
Sbjct: 264 RGRIRDVQHELPLDKISSIGFTL--------ADKVDGPFFLEIDFI 301

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pan troglodytes (taxid: 9598)

>sp|O42636|CIA30_NEUCR Complex I intermediate-associated protein 30, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cia30 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 53/250 (21%)

Query: 4   FRGLWQASLNATKRALTWNLEELMPPSE--------RYIFNFNSKEELKKWHLYSDSEYG 55
           F+  W  SL+   R     L  ++  SE        R I NF + E +    L SD++ G
Sbjct: 9   FKSFWSRSLDELSR-----LTNIVVKSENIRGATGPREIHNFQTPESVADCKLLSDADVG 63

Query: 56  GLSSASLEITESGNGMNGI--------------------FSGNLSLDLSEGSKWNISRSG 95
           G S+A L+     N +  +                    F G +SL+L    +  ISR+G
Sbjct: 64  GSSTAHLDWVPPPNAIPTVTAGDGSDRKPYTPIPGSYARFHGTISLELPTDRR-EISRTG 122

Query: 96  FCGMRSKKFD------GFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQ 149
           + G R+          G  D+D Y  +AM++K D R Y   + TE+ V        +  Q
Sbjct: 123 YAGFRTLDRPPTIFGRGLWDIDPYAYLAMRVKTDARSYFVNVRTESVVPL------DLHQ 176

Query: 150 SFVFVPKD-NWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSG 208
             +FV K   W    I    ++ T  G VI+ +  M   +V+ +  S          K+G
Sbjct: 177 HRLFVKKPGQWETVLIKWNDFVRTNHGKVIEPQTGMLRQKVLSIGFSTTDR------KAG 230

Query: 209 PGDFRVEVDW 218
           P +  VE  W
Sbjct: 231 PYELCVERLW 240

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo sapiens GN=NDUFAF1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 22/204 (10%)

Query: 23  LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
           L E++    + ++ F  KE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct: 113 LHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170

Query: 83  LSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTIYTENW 136
             +  +   +RSG+C M S+   G        D   ++T+ ++++GDGR ++  I  +  
Sbjct: 171 APQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTD 228

Query: 137 VNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLS 195
                Q+ +  +  F+F      W   KIP +++  + RG + D + E+   ++  +  +
Sbjct: 229 FF---QRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFT 285

Query: 196 VNAEGGVPGAKSGPGDFRVEVDWI 219
           +        A    G F +E+D+I
Sbjct: 286 L--------ADKVDGPFFLEIDFI 301

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Homo sapiens (taxid: 9606)

>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 97/204 (47%), Gaps = 22/204 (10%)

Query: 23  LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
           L E++    + ++ F  KE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct: 113 LREVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170

Query: 83  LSEGSKWNISRSGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTIYTENW 136
                +   +RSG+C M S+     F+  +  D   ++T+ ++++GDGR ++  I  +  
Sbjct: 171 APHDGE--STRSGYCAMISRIPRGAFERKVSYDWSQFNTLYLRVRGDGRPWMVNIKEDTD 228

Query: 137 VNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLS 195
                Q+ +  +  F+F      W   KIP +++  + RG + D + E+   ++  +  +
Sbjct: 229 FF---QRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFT 285

Query: 196 VNAEGGVPGAKSGPGDFRVEVDWI 219
           +        A    G F +E+D+I
Sbjct: 286 L--------ADKVDGPFFLEIDFI 301

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pongo pygmaeus (taxid: 9600)

>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus musculus GN=Ndufaf1 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 28/207 (13%)

Query: 23  LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
           L+E++    R ++ F  KE+L KW + SD   GG S   L++  S N  + +  G LS  
Sbjct: 114 LQEVIMEQARVVWQFREKEDLDKWIVTSDKTIGGRSEIFLKM--SKNNRSALLYGTLS-- 169

Query: 83  LSEGSKWNISR-SGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTIYTEN 135
            SE  +   SR SG+C M S+     F+  +  D   ++T+ ++++GDGR ++  I  + 
Sbjct: 170 -SEPPQDGDSRQSGYCAMISRIPRGAFERKLSYDWSQFNTLYLRVRGDGRPWMVNIRQDT 228

Query: 136 WVNSPGQQEDNSWQSFVFVP-KDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRV--VGM 192
                 Q+++  +  F+F      W   KIP +++  + +G V D +  +   ++  +G 
Sbjct: 229 EFI---QRKNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNQGRVRDVQGPLVLDKISSIGF 285

Query: 193 SLSVNAEGGVPGAKSGPGDFRVEVDWI 219
           +LS   +G           F +E+D+I
Sbjct: 286 TLSDKVDGP----------FFLEIDFI 302

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Mus musculus (taxid: 10090)

>sp|Q18726|CIA30_CAEEL Probable complex I intermediate-associated protein 30, mitochondrial OS=Caenorhabditis elegans GN=C50B8.3 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 32/200 (16%)

Query: 32  RYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWN 90
           R  + F+++E+L  W +  DS++  G S+ SL  ++ G     +FSGN+S  + +  +  
Sbjct: 134 RVDYRFDTQEKLDLWKIGCDSDWKEGFSTCSLVNSDRGTA---VFSGNISTKVLKDGR-- 188

Query: 91  ISRSGFCGMRSKKFDGFIDLD------SYDTIAMKLKGDGRCYISTIYTENWVNSPGQQE 144
           + R+G+  M+ +    F          ++  + +K++GDGR Y      +  ++SP    
Sbjct: 189 VERAGWASMKLEDRKAFNRKKFLSKWRNFSHLLLKVRGDGRSY------KIMLHSPLSM- 241

Query: 145 DNSWQSFVFVPKDN-----WYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAE 199
           D +W      P        W   KIP +++  T  G + D +  +N        L   + 
Sbjct: 242 DFTWGDSFSHPLHTHGGPYWQYEKIPFSKFFHTVAGRIQDRQYRVN--------LEDTSS 293

Query: 200 GGVPGAKSGPGDFRVEVDWI 219
            G+       GDFR+E+D+I
Sbjct: 294 IGIVLMDRIDGDFRLEIDYI 313

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Caenorhabditis elegans (taxid: 6239)

>sp|Q61FQ3|CIA30_CAEBR Probable complex I intermediate-associated protein 30, mitochondrial OS=Caenorhabditis briggsae GN=CBG11538 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 32/200 (16%)

Query: 32  RYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWN 90
           R  + F++ E+L  W +  DS++  G S+ SL  ++ G     +FSGN+S  + +  +  
Sbjct: 134 RVEYKFDTSEKLDLWKIGCDSDWKEGFSTCSLVNSDRGTA---VFSGNISTRVLKDGR-- 188

Query: 91  ISRSGFCGMR---SKKFDGFIDLD---SYDTIAMKLKGDGRCYISTIYTENWVNSPGQQE 144
           + R+G+  M+    K F+    L    ++  + +K++GDGR Y      +  ++SP    
Sbjct: 189 VERAGWASMKLEDRKTFNRKKFLSKWRNFSHLLLKVRGDGRSY------KIMLHSPLSM- 241

Query: 145 DNSWQSFVFVPKDN-----WYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAE 199
           D +W      P        W   KIP +++  T  G + D +  +N        L   + 
Sbjct: 242 DFTWGDSFSHPLHTHGGPYWQYEKIPFSKFFHTVAGRIQDRQYRVN--------LEDTSS 293

Query: 200 GGVPGAKSGPGDFRVEVDWI 219
            G+       GDF++E+D+I
Sbjct: 294 IGIVLMDRIDGDFKLEIDYI 313

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
297742953	225	unnamed protein product [Vitis vinifera]	0.982	1.0	0.848	1e-113
224107911	225	predicted protein [Populus trichocarpa]	0.982	1.0	0.84	1e-111
225442028	227	PREDICTED: probable complex I intermedia	0.982	0.991	0.841	1e-111
147782669	237	hypothetical protein VITISV_015801 [Viti	0.982	0.949	0.805	1e-110
359483013	241	PREDICTED: probable complex I intermedia	0.982	0.933	0.792	1e-109
388505586	226	unknown [Lotus japonicus]	0.982	0.995	0.831	1e-107
356559116	226	PREDICTED: probable complex I intermedia	0.982	0.995	0.831	1e-107
222619192	291	hypothetical protein OsJ_03324 [Oryza sa	0.978	0.769	0.807	1e-107
297844682	227	hypothetical protein ARALYDRAFT_471939 [	0.973	0.982	0.835	1e-107
115439685	229	Os01g0727400 [Oryza sativa Japonica Grou	0.978	0.978	0.807	1e-107

>gi|297742953|emb|CBI35820.3| unnamed protein product [Vitis vinifera]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/225 (84%), Positives = 213/225 (94%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKL 120
           SLEI ++GNG++GIFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+K+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 121 KGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDA 180
           KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI KIPLA YLPTWRGNVIDA
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKIPLAHYLPTWRGNVIDA 180

Query: 181 EMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSE 225
           E+EMNPSR+VGMSLSVN+ GGVPGA +GPGDF++E+DWIKALR++
Sbjct: 181 EIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRTQ 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107911|ref|XP_002314650.1| predicted protein [Populus trichocarpa] gi|222863690|gb|EEF00821.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/225 (84%), Positives = 212/225 (94%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASL+ATK+ALTWN+E+LMPP+ER IFNFNS+EELKKWHLYSDSEYGG SSA
Sbjct: 1   MSRFRSLWQASLDATKKALTWNVEDLMPPTERLIFNFNSREELKKWHLYSDSEYGGSSSA 60

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKL 120
           SLE  + GNG+ G+FSGNLSLD++EGSKWNISRSGFCGMRSKKFDGFIDLD+YDTIA+KL
Sbjct: 61  SLEFMDEGNGLKGVFSGNLSLDVAEGSKWNISRSGFCGMRSKKFDGFIDLDAYDTIALKL 120

Query: 121 KGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDA 180
           KGDGR YISTIYTENWVNSPGQ EDNSWQ+FVFVPKDNWYIA+IPLARYLPTWRGNVIDA
Sbjct: 121 KGDGRSYISTIYTENWVNSPGQMEDNSWQAFVFVPKDNWYIARIPLARYLPTWRGNVIDA 180

Query: 181 EMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSE 225
            MEMN SR++GMSLSVNA GG+PGA+SGPGDF+VE+DWIKA R++
Sbjct: 181 SMEMNQSRILGMSLSVNAGGGIPGARSGPGDFKVELDWIKAFRTQ 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442028|ref|XP_002268906.1| PREDICTED: probable complex I intermediate-associated protein 30-like isoform 1 [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/227 (84%), Positives = 213/227 (93%), Gaps = 2/227 (0%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNG--IFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI ++GNG++G  IFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVI 178
           K+KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI KIPLA YLPTWRGNVI
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKIPLAHYLPTWRGNVI 180

Query: 179 DAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSE 225
           DAE+EMNPSR+VGMSLSVN+ GGVPGA +GPGDF++E+DWIKALR++
Sbjct: 181 DAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRTQ 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782669|emb|CAN61795.1| hypothetical protein VITISV_015801 [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/237 (80%), Positives = 213/237 (89%), Gaps = 12/237 (5%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKL 120
           SLEI ++GNG++GIFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+K+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 121 KGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAK------------IPLAR 168
           KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K            IPLA 
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKANLTVILDYHTTIPLAH 180

Query: 169 YLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSE 225
           YLPTWRGNVIDAE+EMNPSR+VGMSLSVN+ GGVPGA +GPGDF++E+DWIKALR++
Sbjct: 181 YLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRTQ 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483013|ref|XP_003632879.1| PREDICTED: probable complex I intermediate-associated protein 30-like isoform 2 [Vitis vinifera]

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/241 (79%), Positives = 213/241 (88%), Gaps = 16/241 (6%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNG--IFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI ++GNG++G  IFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAK--------------I 164
           K+KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K              I
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKASSVLLKLILVSFQI 180

Query: 165 PLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS 224
           PLA YLPTWRGNVIDAE+EMNPSR+VGMSLSVN+ GGVPGA +GPGDF++E+DWIKALR+
Sbjct: 181 PLAHYLPTWRGNVIDAEIEMNPSRIVGMSLSVNSGGGVPGATTGPGDFKLEIDWIKALRT 240

Query: 225 E 225
           +
Sbjct: 241 Q 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505586|gb|AFK40859.1| unknown [Lotus japonicus]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/226 (83%), Positives = 210/226 (92%), Gaps = 1/226 (0%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSR R L+Q+S++ATKR ++ + ++LMPP ERYIF+FNSK+EL KWHLYSDSEYGGLSSA
Sbjct: 1   MSRLRRLFQSSMDATKRVISGSFDDLMPPPERYIFSFNSKQELSKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN-GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMK 119
           SL+ITES NG N GIFSGNLSLD++ GSKWNISR G CGMRSKKFDGFIDLDSYDTIAMK
Sbjct: 61  SLQITESENGQNSGIFSGNLSLDVTPGSKWNISRGGLCGMRSKKFDGFIDLDSYDTIAMK 120

Query: 120 LKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVID 179
           LKGDGRCYISTIYTENWVNSPGQ EDNSWQ+FV+VPK NWYIAKIPLARYLPTWRGNVID
Sbjct: 121 LKGDGRCYISTIYTENWVNSPGQMEDNSWQAFVYVPKGNWYIAKIPLARYLPTWRGNVID 180

Query: 180 AEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSE 225
           AE+EMNPSRV+GMSLSVNAEGGVP A+SGPGDFRVE+DWIKALR++
Sbjct: 181 AEIEMNPSRVLGMSLSVNAEGGVPDARSGPGDFRVELDWIKALRTQ 226

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559116|ref|XP_003547847.1| PREDICTED: probable complex I intermediate-associated protein 30-like [Glycine max]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/226 (83%), Positives = 212/226 (93%), Gaps = 1/226 (0%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSR R L QAS++ATK+ ++ NL++LMPP ER IF+FNSK+EL KWHLYSDSE+GGLSSA
Sbjct: 1   MSRLRRLIQASVDATKKVISGNLDDLMPPPERPIFSFNSKQELSKWHLYSDSEFGGLSSA 60

Query: 61  SLEITESGNG-MNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMK 119
           SL+ITES NG  +GIFSGNLSLD+SEGSKWNI+RSGFCGMRSKKFDGFIDLDSYDTIAMK
Sbjct: 61  SLQITESENGATSGIFSGNLSLDVSEGSKWNITRSGFCGMRSKKFDGFIDLDSYDTIAMK 120

Query: 120 LKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVID 179
           LKGDGRCYISTIYTENWVNSPGQ EDNSWQ+FV+VP+ NWYI KIPLARYLPTWRGNVID
Sbjct: 121 LKGDGRCYISTIYTENWVNSPGQMEDNSWQAFVYVPEGNWYIMKIPLARYLPTWRGNVID 180

Query: 180 AEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSE 225
           A++EMNPSRV+GMSLSVNAEGGVPGA+SGPGDFRVE+DWIKA+R+E
Sbjct: 181 AQIEMNPSRVLGMSLSVNAEGGVPGARSGPGDFRVELDWIKAMRTE 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619192|gb|EEE55324.1| hypothetical protein OsJ_03324 [Oryza sativa Japonica Group]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/228 (80%), Positives = 209/228 (91%), Gaps = 4/228 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSR R LWQAS+NAT+RA+ WN E+L+PPSE+YIFNFNSK+ELK+WHLYSDSEYGGLSSA
Sbjct: 63  MSRLRALWQASVNATRRAIVWNSEDLIPPSEKYIFNFNSKDELKRWHLYSDSEYGGLSSA 122

Query: 61  SLEITESGNGMN----GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTI 116
           SLEIT+ G G +    G+FSGNLSLD+SEGS W I RSGFCGMRSKKF+GFIDLD+YDTI
Sbjct: 123 SLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKIRRSGFCGMRSKKFNGFIDLDAYDTI 182

Query: 117 AMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGN 176
           AMKL+GDGRCYISTIYTENWVNSPGQQEDNSWQ+FV++P+D W I KIPL  YLPTWRGN
Sbjct: 183 AMKLRGDGRCYISTIYTENWVNSPGQQEDNSWQAFVYLPQDRWQIMKIPLDSYLPTWRGN 242

Query: 177 VIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS 224
           VI+A+MEMNP+RVVGMSLSVNAEGGVPGAK+GPGDFR+EVDWIKALR+
Sbjct: 243 VIEAKMEMNPARVVGMSLSVNAEGGVPGAKTGPGDFRLEVDWIKALRT 290

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844682|ref|XP_002890222.1| hypothetical protein ARALYDRAFT_471939 [Arabidopsis lyrata subsp. lyrata] gi|297336064|gb|EFH66481.1| hypothetical protein ARALYDRAFT_471939 [Arabidopsis lyrata subsp. lyrata]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/225 (83%), Positives = 205/225 (91%), Gaps = 2/225 (0%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF FNSKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFNSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNG--MNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G    GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVI 178
           +L+GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AKIPLARYLPTWRGNVI
Sbjct: 121 RLRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKIPLARYLPTWRGNVI 180

Query: 179 DAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALR 223
           D EMEMNP RV+GMSLSVNAEGG  GAKSG GDFRVE+DWIKALR
Sbjct: 181 DVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFRVEIDWIKALR 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115439685|ref|NP_001044122.1| Os01g0727400 [Oryza sativa Japonica Group] gi|57899102|dbj|BAD86921.1| auxin-induced-related / indole-3-acetic acid induced-related-like [Oryza sativa Japonica Group] gi|57899739|dbj|BAD87459.1| auxin-induced-related / indole-3-acetic acid induced-related-like [Oryza sativa Japonica Group] gi|113533653|dbj|BAF06036.1| Os01g0727400 [Oryza sativa Japonica Group] gi|215686775|dbj|BAG89625.1| unnamed protein product [Oryza sativa Japonica Group] gi|218188988|gb|EEC71415.1| hypothetical protein OsI_03593 [Oryza sativa Indica Group]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/228 (80%), Positives = 209/228 (91%), Gaps = 4/228 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSR R LWQAS+NAT+RA+ WN E+L+PPSE+YIFNFNSK+ELK+WHLYSDSEYGGLSSA
Sbjct: 1   MSRLRALWQASVNATRRAIVWNSEDLIPPSEKYIFNFNSKDELKRWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN----GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTI 116
           SLEIT+ G G +    G+FSGNLSLD+SEGS W I RSGFCGMRSKKF+GFIDLD+YDTI
Sbjct: 61  SLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKIRRSGFCGMRSKKFNGFIDLDAYDTI 120

Query: 117 AMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGN 176
           AMKL+GDGRCYISTIYTENWVNSPGQQEDNSWQ+FV++P+D W I KIPL  YLPTWRGN
Sbjct: 121 AMKLRGDGRCYISTIYTENWVNSPGQQEDNSWQAFVYLPQDRWQIMKIPLDSYLPTWRGN 180

Query: 177 VIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS 224
           VI+A+MEMNP+RVVGMSLSVNAEGGVPGAK+GPGDFR+EVDWIKALR+
Sbjct: 181 VIEAKMEMNPARVVGMSLSVNAEGGVPGAKTGPGDFRLEVDWIKALRT 228

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2193937	228	AT1G72420 "AT1G72420" [Arabido	0.973	0.978	0.792	1.7e-98
TAIR|locus:2029100	236	AT1G17350 "AT1G17350" [Arabido	0.930	0.902	0.784	2.3e-94
FB|FBgn0039689	296	CG7598 [Drosophila melanogaste	0.768	0.594	0.288	2.3e-16
UNIPROTKB|E1BZH1	303	NDUFAF1 "Uncharacterized prote	0.768	0.580	0.262	3.2e-13
UNIPROTKB|E1BAZ2	328	NDUFAF1 "Uncharacterized prote	0.746	0.521	0.267	3.4e-13
ZFIN|ZDB-GENE-050306-9	304	ndufaf1 "NADH dehydrogenase (u	0.786	0.592	0.272	1.6e-12
CGD|CAL0004155	227	orf19.3353 [Candida albicans (	0.834	0.841	0.298	5.7e-12
UNIPROTKB|Q5A9Q4	227	CIA30 "Potential mitochondrial	0.834	0.841	0.298	5.7e-12
UNIPROTKB|Q9Y375	327	NDUFAF1 "Complex I intermediat	0.746	0.522	0.245	1e-10
UNIPROTKB|E2RPE7	328	NDUFAF1 "Uncharacterized prote	0.742	0.518	0.265	1e-10

TAIR|locus:2193937 AT1G72420 "AT1G72420" [Arabidopsis thaliana (taxid:3702)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 179/226 (79%), Positives = 199/226 (88%)

Query:     1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
             MSRFR LWQAS+NATK+ALTW LEE +PP E+ IF FNSKE+LK WHLYSDSEYGGLSSA
Sbjct:     1 MSRFRSLWQASVNATKKALTWELEEWVPPVEKCIFKFNSKEDLKTWHLYSDSEYGGLSSA 60

Query:    61 SLEITESGN--GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
             SLEI + GN    NG+FSGNLS D+ EGSKWNI+RSGFCGMRSKKFDGFIDL+ YD+IA+
Sbjct:    61 SLEIKDGGNRSDCNGVFSGNLSTDMREGSKWNINRSGFCGMRSKKFDGFIDLEGYDSIAL 120

Query:   119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVI 178
             +LKGDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PK NWY AK+PL RYLPTW+GNVI
Sbjct:   121 RLKGDGRCYISTIYTENWVNSPGQAEDNSWQAFVFAPKGNWYTAKVPLTRYLPTWKGNVI 180

Query:   179 DAEMEMNPSRVVGMSLSVNAEGG-VPGAKSGPGDFRVEVDWIKALR 223
             DAEMEMNP  VVGMSLSVNA+GG   GAKSG GDF+VE+DWIKA+R
Sbjct:   181 DAEMEMNPGHVVGMSLSVNAQGGGFIGAKSGAGDFQVEIDWIKAVR 226

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2029100 AT1G17350 "AT1G17350" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 175/223 (78%), Positives = 196/223 (87%)

Query:     1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
             MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct:     1 MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query:    61 SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
             SLEI + G+G +  G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct:    61 SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query:   119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAK--------IPLARYL 170
             +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK        IPLARYL
Sbjct:   121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKASPTTSIDIPLARYL 180

Query:   171 PTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFR 213
             PTWRGNVID EMEMNP RV+GMSLSVNAEGG  GAKSG GDFR
Sbjct:   181 PTWRGNVIDVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFR 223

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

FB|FBgn0039689 CG7598 [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 58/201 (28%), Positives = 108/201 (53%)

Query:    29 PSER-YIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
             P E   +F+F + + L KW + +D+++G G S+A+LE++ +G G+   F G ++ D ++ 
Sbjct:    85 PGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGL---FHGQVNSDHTKD 141

Query:    87 SKWNISRSGFCGMRSK------KFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSP 140
                 I R+G+  +R+K      K +   D   Y+ + MK++GDGR Y+  ++TE + +  
Sbjct:   142 GI--IKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFDLM 199

Query:   141 GQQEDNSWQSFVFVPKD--NWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNA 198
                  N    +V   +   +W IAKIP +++  + +G V D +  +  +RV     SV A
Sbjct:   200 W----NDIYHYVLYTRGGPHWQIAKIPFSKFFLSSKGRVQDRQGAIPLNRVTHFGFSVAA 255

Query:   199 EGGVPGAKSGPGDFRVEVDWI 219
             + G+     GP  F +E+D++
Sbjct:   256 KKGM----DGP--FGLEIDYV 270

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=NAS

GO:0006119 "oxidative phosphorylation" evidence=ISS

UNIPROTKB|E1BZH1 NDUFAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 52/198 (26%), Positives = 101/198 (51%)

Query:    32 RYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNI 91
             + ++ F ++E+L KW + SD E GG S   L++  +  G   +  G L+ ++    +   
Sbjct:   101 KVMWEFRTQEDLNKWVISSDVEIGGKSEVYLKLGRNNQG--AMLYGILNTEVPRDGETKY 158

Query:    92 SRSGFCGMRSKKFDG------FIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQED 145
             S  G+C MR+K   G      + D  +++ + ++++GDGR ++  IYT+ + +    Q+D
Sbjct:   159 S--GYCSMRAKPAVGSFARKKYYDWSNFNCLYLRVRGDGRAWMVNIYTDPYFS---HQKD 213

Query:   146 NSWQSFVFVPKDN-WYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPG 204
             + +  F+F      W   KIP +++  + RG V D   + +P   + +   ++  G   G
Sbjct:   214 DLYNYFMFTRGGPYWEEIKIPFSKFFLSSRGRVQD---DQHP---IWLD-KISTLGFTLG 266

Query:   205 AKSGPGDFRVEVDWIKAL 222
              K   G F++E+D+I  L
Sbjct:   267 DKVD-GPFQLEIDFIGLL 283

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BAZ2 NDUFAF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 50/187 (26%), Positives = 96/187 (51%)

Query:    23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
             L E++    + ++ F SKE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct:   114 LHEVLMEQAKVVWQFRSKEDLDKWTVTSDKVIGGRSEVFLKMGK--NNQSALLYGTLSSE 171

Query:    83 LSEGSKWNISRSGFCGMRSKKFDGFIDLD-SYD-----TIAMKLKGDGRCYISTIYTENW 136
               +  +    RSG+C M SK   G  ++  SYD     T+ ++++GDGR ++  I  +  
Sbjct:   172 APQDGE--SGRSGYCAMVSKIPRGPFEMKRSYDWSQFNTLYLRVRGDGRPWMVNIREDTD 229

Query:   137 VNSPGQQEDNSWQSFVFVPKDN-WYIAKIPLARYLPTWRGNVIDAEMEMNPSRV--VGMS 193
             +    Q++D  +  F+F      W   KIP +++  + +G + DA+ ++   ++  +G +
Sbjct:   230 II---QKKDQMYSYFMFTRGGPYWQEVKIPFSKFFFSNQGRIRDAQYQLLLDKISSIGFT 286

Query:   194 LSVNAEG 200
             L+   +G
Sbjct:   287 LADKVDG 293

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-050306-9 ndufaf1 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 55/202 (27%), Positives = 97/202 (48%)

Query:    25 ELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLS 84
             E M    R ++ F   E L +W + SD E GG S A + + +  N    +  G LS    
Sbjct:    97 EHMLEQTRVVWEFRGPESLNEWIVSSDQEIGGRSVAYVSLGK--NNTTCLLYGTLSSTPP 154

Query:    85 EGSKWNISRSGFCGMRSK----KFDG--FIDLDSYDTIAMKLKGDGRCYISTIYTENWVN 138
                +   S  G+C MRSK     FD     D  S++T+ ++++GDGR ++  +  E + +
Sbjct:   155 RDGETRYS--GYCSMRSKPPKASFDRKKHYDWSSFNTLHLRIRGDGRPWMINVSAETYFS 212

Query:   139 SPGQQEDNSWQSFVFVPKDN-WYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVN 197
                 Q D+ +  F++      W   KIP +++  + RG + D++   +P   + +   +N
Sbjct:   213 ---HQRDDIYSYFLYTRGGPYWQDVKIPFSKFFLSSRGRIQDSQ---HP---LWLD-KIN 262

Query:   198 AEGGVPGAKSGPGDFRVEVDWI 219
               G   G K+  G F++E+D+I
Sbjct:   263 TIGFTLGDKAD-GPFQLEIDFI 283

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0004155 orf19.3353 [Candida albicans (taxid:5476)]

 Score = 163 (62.4 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 66/221 (29%), Positives = 102/221 (46%)

Query:    12 LNATKRALTWNLEELMPPSERYIFNFNSKEE--LKKWHLYSDSEYGGLSSASLEITESGN 69
             LNATK        EL  P +  + NF  + E  L +    SD E GG S+ + +I    +
Sbjct:     8 LNATKSIFA-KQAELTRPVQS-VLNFKREPEKSLDQVLTRSDQELGGYSTVNFDIDPKEH 65

Query:    70 GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKK------F-DGFIDLDSYDTIAMKLKG 122
                G F GNLSLDL + +   ++RSG+   R+K       F D F D  +Y ++ +++KG
Sbjct:    66 C--GHFYGNLSLDLPKDNP-QVTRSGYAMFRTKDQNQSWLFGDSFWDWTNYSSLVLRVKG 122

Query:   123 DGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPT-WRGNVIDAE 181
             D R Y+  I      N+P   +    + F+  P   W    IPL  ++ T W   VI   
Sbjct:   123 DRRKYLVNIQA----NTPLVTDLFQHRLFLNHP-GQWETVVIPLNDFVMTNW--GVIQDG 175

Query:   182 MEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKAL 222
              E+N   V  + +      G+     GP  + +++DWIK +
Sbjct:   176 SELNKGEVKSVGI------GLLDKHYGP--YSLKIDWIKVM 208

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A9Q4 CIA30 "Potential mitochondrial Complex I assembly chaperone" [Candida albicans SC5314 (taxid:237561)]

 Score = 163 (62.4 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 66/221 (29%), Positives = 102/221 (46%)

Query:    12 LNATKRALTWNLEELMPPSERYIFNFNSKEE--LKKWHLYSDSEYGGLSSASLEITESGN 69
             LNATK        EL  P +  + NF  + E  L +    SD E GG S+ + +I    +
Sbjct:     8 LNATKSIFA-KQAELTRPVQS-VLNFKREPEKSLDQVLTRSDQELGGYSTVNFDIDPKEH 65

Query:    70 GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKK------F-DGFIDLDSYDTIAMKLKG 122
                G F GNLSLDL + +   ++RSG+   R+K       F D F D  +Y ++ +++KG
Sbjct:    66 C--GHFYGNLSLDLPKDNP-QVTRSGYAMFRTKDQNQSWLFGDSFWDWTNYSSLVLRVKG 122

Query:   123 DGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPT-WRGNVIDAE 181
             D R Y+  I      N+P   +    + F+  P   W    IPL  ++ T W   VI   
Sbjct:   123 DRRKYLVNIQA----NTPLVTDLFQHRLFLNHP-GQWETVVIPLNDFVMTNW--GVIQDG 175

Query:   182 MEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKAL 222
              E+N   V  + +      G+     GP  + +++DWIK +
Sbjct:   176 SELNKGEVKSVGI------GLLDKHYGP--YSLKIDWIKVM 208

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9Y375 NDUFAF1 "Complex I intermediate-associated protein 30, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 46/187 (24%), Positives = 93/187 (49%)

Query:    23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
             L E++    + ++ F  KE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct:   113 LHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170

Query:    83 LSEGSKWNISRSGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTIYTENW 136
               +  +   +RSG+C M S+     F+  +  D   ++T+ ++++GDGR ++  I  +  
Sbjct:   171 APQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDT- 227

Query:   137 VNSPGQQEDNSWQSFVFVPKDN-WYIAKIPLARYLPTWRGNVIDAEMEMNPSRV--VGMS 193
                  Q+ +  +  F+F      W   KIP +++  + RG + D + E+   ++  +G +
Sbjct:   228 --DFFQRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFT 285

Query:   194 LSVNAEG 200
             L+   +G
Sbjct:   286 LADKVDG 292

GO:0006461 "protein complex assembly" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2RPE7 NDUFAF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 50/188 (26%), Positives = 94/188 (50%)

Query:    23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
             L E++    + ++ F  KE+L KW + SD   GG S   L++    N  + +  G LS  
Sbjct:   114 LHEVLLEQAKVVWQFRGKEDLDKWMVTSDKTIGGRSEVFLKMGR--NNQSALLYGTLS-- 169

Query:    83 LSEGSKWNIS-RSGFCGMRSKKFDG-F-----IDLDSYDTIAMKLKGDGRCYISTIYTEN 135
              SE  K   S RSG+C M S+   G F      D   ++T+ ++++GDGR ++  I  + 
Sbjct:   170 -SEAPKDGESGRSGYCAMISRIPRGPFERKRAYDWSQFNTLYLRVRGDGRPWMVNIREDT 228

Query:   136 WVNSPGQQEDNSWQSFVFVPKDN-WYIAKIPLARYLPTWRGNVIDAEMEMNPSRV--VGM 192
              +    Q+++  +  F+F      W   KIP +++  + +G + DA+ ++   ++  +G 
Sbjct:   229 DIV---QRKNQMYSYFMFTRGGPYWQEVKIPFSKFFYSNQGRIRDAQYQLLLDKISSIGF 285

Query:   193 SLSVNAEG 200
             +L+   +G
Sbjct:   286 TLADKVDG 293

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQI7	CIA30_ARATH	No assigned EC number	0.8177	0.9737	0.9823	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_X5562 hypothetical protein (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam08547	156	pfam08547, CIA30, Complex I intermediate-associate	3e-49

>gnl|CDD|219896 pfam08547, CIA30, Complex I intermediate-associated protein 30 (CIA30)

 Score =  158 bits (401), Expect = 3e-49
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 26/182 (14%)

Query: 35  FNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRS 94
           F+F   E+L  W   +D+  GG+S++SL ++  G     +FSGNLSL+         +  
Sbjct: 1   FDFTQPEDLDDWTAVNDTVMGGVSTSSLTLSPDGTA---VFSGNLSLE---------NNG 48

Query: 95  GFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFV 154
           GF  +R+K     +DL  Y  + +++KGDGR Y   + TE+  +        S+Q+    
Sbjct: 49  GFASVRTKNRKPPLDLSGYTGLELRVKGDGRTYKFNLKTEDEFDGL------SYQADFDT 102

Query: 155 PKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRV 214
               W   KIP + + PT+RG V+D    ++ SR+  + L +        +   PG F +
Sbjct: 103 KPGEWQTVKIPFSDFKPTFRGRVVDDAPPLDLSRIKQIGLLI--------SDKQPGPFEL 154

Query: 215 EV 216
           E+
Sbjct: 155 EI 156

This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation. Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PF08547	157	CIA30: Complex I intermediate-associated protein 3	100.0
KOG2435	323	consensus Uncharacterized conserved protein [Funct	100.0
PF03425	178	CBM_11: Carbohydrate binding domain (family 11); I	99.43
PF04620	217	FlaA: Flagellar filament outer layer protein Flaa;	82.29

>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits

Probab=100.00  E-value=3e-45  Score=299.26  Aligned_cols=157  Identities=34%  Similarity=0.720  Sum_probs=145.4

Q ss_pred             EecCCcccccCeEEecCceecceeEEEEEEeeCCCccEEEEEEEEecccCCCCcccccCcceeEeeecCCCCCCCCCCCC
Q 027018           35 FNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYD  114 (229)
Q Consensus        35 ~~F~~~~~~~~W~~~~D~vmGG~S~s~~~~~~~~~g~~~~F~G~ls~e~p~~~~~~ln~gGFasvr~~~~~~~~dls~y~  114 (229)
                      |+|++++++++|++++|.||||.|+|++.+.+++  .+++|+|+|+++         |+||||++|+.....++||+.|+
T Consensus         1 f~F~~~~~~~~W~~~~D~vmGG~S~~~~~~~~~~--~~~~F~G~ls~~---------~~~GFa~~r~~~~~~~~dls~y~   69 (157)
T PF08547_consen    1 FDFNSPQDLENWRVVSDTVMGGVSTASLEFSPED--GSAVFSGNLSTE---------NNGGFASVRTPSFPSPLDLSGYD   69 (157)
T ss_pred             CcCCCChhhCCeEEEcceEeCCeEEEEEEEECCC--CEEEEEEEEecC---------CCCceEEEEEccCCCcCCCCCCc
Confidence            6899999999999999999999999999997532  369999999999         89999999994445789999999


Q ss_pred             eEEEEEeecCcEEEEEEEecCCcCCCCCCCCCceEEEEEcCCCCeEEEEEeCCCceeeccccccCCCCCCCccCeeEEEE
Q 027018          115 TIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSL  194 (229)
Q Consensus       115 gi~lrvrGDGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~t~~g~W~tv~iPFs~F~~~~rG~~~~~~~~l~~~~I~~ig~  194 (229)
                      ||+|+||||||+|+++|++++.      .+...|++.+.+++++|++|+|||++|+|++||++++++++||+++|++|||
T Consensus        70 ~l~l~vrgdGr~Y~~~l~~~~~------~~~~~y~~~f~t~~~~w~~v~iPFs~F~~~~rG~~v~~~~~l~~~~I~~ig~  143 (157)
T PF08547_consen   70 GLELRVRGDGRTYKVNLRTDND------EPSDSYQARFQTPPGEWQTVRIPFSDFVPTFRGRPVDDAPPLDPSRIRSIGF  143 (157)
T ss_pred             EEEEEEEcCCceEEEEEEeCCC------CCCceEEEEEeccCCccEEEEEEHHHCceeeCCcccCCCCCcChHHceEEEE
Confidence            9999999999999999999976      2579999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCcCCeeEEEEE
Q 027018          195 SVNAEGGVPGAKSGPGDFRVEV  216 (229)
Q Consensus       195 ~~~~~~g~~~~~~~~G~F~LeI  216 (229)
                      ++.+        +++|||+|+|
T Consensus       144 ~~~~--------~~~G~F~L~I  157 (157)
T PF08547_consen  144 MISD--------KQEGPFELEI  157 (157)
T ss_pred             EEec--------CCCCCEEEeC
Confidence            9996        9999999997

This means it is possible that it is not directly involved in oxidative phosphorylation [, ].

>KOG2435 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.5e-42  Score=296.12  Aligned_cols=194  Identities=34%  Similarity=0.656  Sum_probs=178.7

Q ss_pred             hhcccccccCC------CCccEEEecCCcccccCeEEecCceecceeEEEEEEeeCCCccEEEEEEEEecccCCCCcccc
Q 027018           18 ALTWNLEELMP------PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNI   91 (229)
Q Consensus        18 ~~~~~~~~l~p------~~~~~l~~F~~~~~~~~W~~~~D~vmGG~S~s~~~~~~~~~g~~~~F~G~ls~e~p~~~~~~l   91 (229)
                      ++.|+.++-.|      ++.+.+|+|++++++..|++.+|...||.|+|.+++.+.  |++++|+|++|++.|+++  .+
T Consensus        99 kl~w~~eE~~pllevr~~eakvvf~F~~kEdLdkWtv~sDsd~gG~StasLe~sd~--G~~alf~G~~ss~~~kdg--~i  174 (323)
T KOG2435|consen   99 KLHWRGEEGHPLLEVRLEEAKVVFQFRGKEDLDKWTVTSDSDIGGRSTASLEMSDN--GQSALFYGTLSSEAPKDG--EI  174 (323)
T ss_pred             HHHhccccCccceeecCCcceEEEEccChhhcceeEeecccccCCeeeEEEEecCC--CcceeeccccccccccCc--ce
Confidence            67798887777      889999999999999999999999999999999999765  557999999999999987  58


Q ss_pred             cCcceeEeeecC---CC--CCCCCCCCCeEEEEEeecCcEEEEEEEecCCcCCCCCCCCCceEEEEEcCCC-CeEEEEEe
Q 027018           92 SRSGFCGMRSKK---FD--GFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKD-NWYIAKIP  165 (229)
Q Consensus        92 n~gGFasvr~~~---~~--~~~dls~y~gi~lrvrGDGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~t~~g-~W~tv~iP  165 (229)
                      +++|||+||+++   |.  ..+|++.|+-|.||||||||.|+++|+++++++   ..++++|++++||++| .||.++||
T Consensus       175 ~RsGyc~Mrs~~RkaF~rk~~~dw~qfn~L~LrvRGDGRsy~inihte~~~d---q~wndsys~flft~gGp~wq~~KIP  251 (323)
T KOG2435|consen  175 TRSGYCAMRSRPRKAFERKMSYDWSQFNTLYLRVRGDGRSYMINIHTETDFD---QRWNDSYSYFLFTRGGPYWQEVKIP  251 (323)
T ss_pred             eeeeeeeeeccchhhhcceecccccccceEEEEEecCCceEEEEecCccchh---hhcccceeeEEecCCCCceeEEecc
Confidence            999999999954   42  456788899999999999999999999999986   4789999999999988 99999999


Q ss_pred             CCCceeeccccccCCCCCCCccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEecCC
Q 027018          166 LARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSEL  226 (229)
Q Consensus       166 Fs~F~~~~rG~~~~~~~~l~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~~~  226 (229)
                      |+.|.++++||+++.|.+|++.+|.+|||.+++        +..|||.||||+|+++.++.
T Consensus       252 fSKff~t~kGriqDrq~e~nl~~vssig~sl~d--------k~dGpF~LEIDfIGv~~d~~  304 (323)
T KOG2435|consen  252 FSKFFFTNKGRIQDRQHELNLDKVSSIGFSLAD--------KVDGPFFLEIDFIGVFTDPA  304 (323)
T ss_pred             hhhheeccccceeecccccCccceeeEeEEEee--------ccCCcceeeEEEEEEecCCC
Confidence            999999999999999999999999999999998        89999999999999998875

>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=99.43  E-value=6.9e-12  Score=104.39  Aligned_cols=158  Identities=20%  Similarity=0.290  Sum_probs=84.3

Q ss_pred             CccEEEecCCccc----ccCeEEecCceecceeEEEEEEeeCCCccEEEEEEEEecccCCCCcccccCcceeEeeecCCC
Q 027018           30 SERYIFNFNSKEE----LKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFD  105 (229)
Q Consensus        30 ~~~~l~~F~~~~~----~~~W~~~~D~vmGG~S~s~~~~~~~~~g~~~~F~G~ls~e~p~~~~~~ln~gGFasvr~~~~~  105 (229)
                      ...+|.||.+...    ...|...+|...++.++..-   +. .+.++.++.. ..          ..++++++....  
T Consensus         3 ~~~~IDDFE~~~~~~~l~~~w~s~~~~~~~~~~~~~~---~~-~~~~l~~~y~-~~----------~~~~~~~v~~~l--   65 (178)
T PF03425_consen    3 PPLLIDDFEDYDGDNALQGAWYSYNDDGPGLSLTISD---PD-GGKALAISYD-GG----------GSGGWAGVTKDL--   65 (178)
T ss_dssp             SEEEEE-SSSS----------EEEEETT-EEEEEEEE----S-SSEEEEEEEE-------------SS-EEEEE-EE---
T ss_pred             ccceeEcccCCCCccceeeeeeccCCCCceeEEEeeC---CC-CCcEEEEEEe-cC----------CCCceEEEecCC--
Confidence            4578999987643    24798888876554444333   22 2334566665 22          368888886665  


Q ss_pred             CCCCCCCCCeEEEEEeecC--cEEEEEEEecCCcCCCCCCCCCceEEEEEcCCCCeEEEEEeCCCceee---c-cccccC
Q 027018          106 GFIDLDSYDTIAMKLKGDG--RCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPT---W-RGNVID  179 (229)
Q Consensus       106 ~~~dls~y~gi~lrvrGDG--r~Y~~~l~~~~~~~~~~~~~~~~yq~~~~t~~g~W~tv~iPFs~F~~~---~-rG~~~~  179 (229)
                      ..-|+|.|+||.|.+|+||  ++..|.|+...        ....|.+. ++...+|++|+|||++|.+.   . -|..  
T Consensus        66 ~~~DwS~~~gl~Fw~k~dgs~~~l~vqi~d~~--------~~e~~~~~-~~~~~~W~~V~IPF~~f~~~~~~~p~g~~--  134 (178)
T PF03425_consen   66 DPGDWSGYGGLSFWIKGDGSGNKLRVQIKDGG--------DYEYWEAS-FTDSSTWKTVEIPFSDFTQRPDYQPGGWG--  134 (178)
T ss_dssp             S----TT--EEEEEEEE------EEEEEEEE---------EEEEEEEE-E---SS-EEEEEEGGG-EE--S---TT----
T ss_pred             CcCCcccCCcEEEEEEcCCCCcEEEEEEecCC--------cceeeEee-cCCCCcCEEEEEEHHHcccccccCCCCCC--
Confidence            4569999999999999665  66666666653        12446554 44444599999999999971   1 1111  


Q ss_pred             CCCCCCccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEec
Q 027018          180 AEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS  224 (229)
Q Consensus       180 ~~~~l~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~  224 (229)
                      ...+||+.+|.+|.|.+.         .-.+++.|.||.|++|..
T Consensus       135 ~~~~ldl~~v~~~~~~~~---------~~~~~~~~~iDdI~l~~~  170 (178)
T PF03425_consen  135 ADGTLDLTNVWEFAFYVN---------GGGGAGTFYIDDIRLYGA  170 (178)
T ss_dssp             --SS--TTSEEEEEEEES---------SS---EEEEEEEEEEE-B
T ss_pred             cccccChHHcEEEEEEEc---------CCCceeEEEEEeEEEEeC
Confidence            134789999999999885         334459999999999954

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.

>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria

Probab=82.29  E-value=29  Score=29.94  Aligned_cols=100  Identities=15%  Similarity=0.227  Sum_probs=70.7

Q ss_pred             CeEEEEEeecCcEEEEEEEecCCcCCCCCCCCCceEEEEE-cCCCCeEEEEEeCCCceeeccccccCCC--CCCCccCee
Q 027018          114 DTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVF-VPKDNWYIAKIPLARYLPTWRGNVIDAE--MEMNPSRVV  190 (229)
Q Consensus       114 ~gi~lrvrGDGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~-t~~g~W~tv~iPFs~F~~~~rG~~~~~~--~~l~~~~I~  190 (229)
                      +.|.+-|.|+|..|.|.+.-.+.       .+..++..+= ..-..|+.+..+.-...+..|-+.+...  .+.....|+
T Consensus       108 k~I~vWV~G~n~~h~L~v~lrD~-------~G~~~~l~~G~L~f~GWK~L~~~iP~~ip~~r~r~~q~~~~yp~~~~~l~  180 (217)
T PF04620_consen  108 KSISVWVYGDNYPHWLEVLLRDA-------KGEVHQLPLGSLNFDGWKNLTVNIPPYIPDVRNRILQQYPRYPRSDPGLK  180 (217)
T ss_pred             EEEEEEEECCCCCceEEEEEEcC-------CCCEEEEEeeeecCCceeEEEEECCCCCCccceeeeeecccCCCCCCceE
Confidence            56778889999888887777654       3455664431 2223599999999999997665554322  233444578


Q ss_pred             EEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEecC
Q 027018          191 GMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRSE  225 (229)
Q Consensus       191 ~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~~  225 (229)
                      =.||.+..     .+....|+|-+-+|.+++.-+.
T Consensus       181 f~gfrI~~-----dp~~~~g~f~iYfDdlkv~tD~  210 (217)
T PF04620_consen  181 FVGFRIDR-----DPDERGGDFYIYFDDLKVLTDK  210 (217)
T ss_pred             EEEEEEEC-----ChhhcCCCEEEEEeeeEEEEEE
Confidence            88888876     3457789999999999998664

They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
1v0a_A	178	Endoglucanase H; carbohydrate binding module, cell	8e-04

>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30 Length = 178

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 32/197 (16%), Positives = 56/197 (28%), Gaps = 36/197 (18%)

Query: 28  PPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGS 87
              E+ + +F   E +  W   S S  G   S  +   ++GNGM                
Sbjct: 4   AVGEKMLDDF---EGVLNW--GSYSGEGAKVSTKIVSGKTGNGME--------------V 44

Query: 88  KWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKG-DGRCYISTIYTENWVNSPGQQEDN 146
            +  +  G+ G          D   +  I+  +K  DG              S     D 
Sbjct: 45  SYTGTTDGYWGT-VYSLPD-GDWSKWLKISFDIKSVDGSANEIRF--MIAEKSINGVGDG 100

Query: 147 SWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAEM--EMNPSRVVGMSLSVNAEGGVPG 204
               +   P  +W   +IP + +           +M   ++   +  +            
Sbjct: 101 EHWVYSITPDSSWKTIEIPFSSFRRRLDYQPPGQDMSGTLDLDNIDSIHFMYAN------ 154

Query: 205 AKSGPGDFRVEVDWIKA 221
             +  G F   VD IK 
Sbjct: 155 --NKSGKF--VVDNIKL 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
1v0a_A	178	Endoglucanase H; carbohydrate binding module, cell	99.94
1wmx_A	205	COG3291: FOG: PKD repeat; CBM30, carbohydrate bind	96.79
1wky_A	464	Endo-beta-1,4-mannanase; TIM barrel, catalytic dom	94.62
3f95_A	193	Beta-glucosidase; beta-sandwich, hydrolase; 1.80A	93.28

>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30

Probab=99.94  E-value=6e-26  Score=187.26  Aligned_cols=158  Identities=16%  Similarity=0.234  Sum_probs=116.5

Q ss_pred             CCccEEEecCCcccccCeEEecCceecceeEEEEEEeeCCCccEEEEEEEEecccCCCCccccc-CcceeEeeecCCCCC
Q 027018           29 PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNIS-RSGFCGMRSKKFDGF  107 (229)
Q Consensus        29 ~~~~~l~~F~~~~~~~~W~~~~D~vmGG~S~s~~~~~~~~~g~~~~F~G~ls~e~p~~~~~~ln-~gGFasvr~~~~~~~  107 (229)
                      ..+++|++|..+.   .|..++|.   |.|.+ +.+.+..    ..+.++||++         | +|||+|||...  .+
T Consensus         5 ~~~~~i~df~~~~---~W~~v~Ds---~~s~s-~~~~~g~----~~~~l~VS~~---------N~nGGF~svr~n~--~~   62 (178)
T 1v0a_A            5 VGEKMLDDFEGVL---NWGSYSGE---GAKVS-TKIVSGK----TGNGMEVSYT---------GTTDGYWGTVYSL--PD   62 (178)
T ss_dssp             BSEEEEECSSSSC---CCEEEEET---TCEEE-EEEEECS----SSEEEEEEEE---------CCSSCEEEEEEEC--SC
T ss_pred             ccCcceecCCCCC---ceEEEcCC---CcEEE-EEEecCc----eeeEEEEEEe---------cCCCCEEEEEcCC--CC
Confidence            4566788886554   89999994   33333 5554421    3344499999         8 99999999764  67


Q ss_pred             CCCCCCCeEEEEEee---cCcEEEEEEEecCCcCCCCCCCCCceEEEEEcCCCCeEEEEEeCCCceeeccccccCCC---
Q 027018          108 IDLDSYDTIAMKLKG---DGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVIDAE---  181 (229)
Q Consensus       108 ~dls~y~gi~lrvrG---DGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~t~~g~W~tv~iPFs~F~~~~rG~~~~~~---  181 (229)
                      .|++.|+||+|+|+|   +|++|+|.||+....-   ..+...|++. |++...|++|+|||++|.  +|.+.++..   
T Consensus        63 ~d~s~~~GI~l~vkG~~~nG~~y~~~LR~~~~~~---~~~~~~y~~s-F~t~~~W~~IeIPFs~F~--~r~~~~P~~~~~  136 (178)
T 1v0a_A           63 GDWSKWLKISFDIKSVDGSANEIRFMIAEKSING---VGDGEHWVYS-ITPDSSWKTIEIPFSSFR--RRLDYQPPGQDM  136 (178)
T ss_dssp             CCCTTCCEEEEEEEEC---CCCEEEEEEEECTTS---SSEEEEEEEE-ECCCSSCEEEEEEGGGCE--ECCSCCCTTCCC
T ss_pred             CCHhHCCcEEEEEEcCCCCCCEEEEEEeeCCCCC---CCCCeeEEEE-ecCCCcCEEEEEEHHHhc--cccccCCCCccc
Confidence            999999999999999   6999999999975420   0123566654 555588999999999999  444433332   


Q ss_pred             -CCCCccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEec
Q 027018          182 -MEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS  224 (229)
Q Consensus       182 -~~l~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~  224 (229)
                       .+||+++|++|+||+..        ..+|.  |.|++|+.|..
T Consensus       137 ~~~~d~~~i~si~~m~G~--------~~~g~--~~id~I~l~~~  170 (178)
T 1v0a_A          137 SGTLDLDNIDSIHFMYAN--------NKSGK--FVVDNIKLIGA  170 (178)
T ss_dssp             CSSCCTTSEEEEEEEESS--------SCCEE--EEEEEEEEECB
T ss_pred             CCCcChhHeEEEEEEEcC--------CCcce--EEEEEEEEEee
Confidence             38999999999999752        34454  89999999864

>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A

Probab=96.79  E-value=0.1  Score=43.02  Aligned_cols=111  Identities=19%  Similarity=0.177  Sum_probs=76.9

Q ss_pred             cCcceeEeeecCC-CCCCCCCCCC---eEEEEEeec--CcEEEEEEEecCCcCCCCCCCCCceEEEE-----EcCCCCeE
Q 027018           92 SRSGFCGMRSKKF-DGFIDLDSYD---TIAMKLKGD--GRCYISTIYTENWVNSPGQQEDNSWQSFV-----FVPKDNWY  160 (229)
Q Consensus        92 n~gGFasvr~~~~-~~~~dls~y~---gi~lrvrGD--Gr~Y~~~l~~~~~~~~~~~~~~~~yq~~~-----~t~~g~W~  160 (229)
                      ++.|+.++-..+- -...||+.|-   +|+|-+||.  |..+.+.+.++... +   ..+..-|...     .+.+-+||
T Consensus        59 ~~~~w~~~~~~l~~w~~~DLs~y~~nG~leF~IKG~~GGE~~~ig~~D~~~e-~---~~g~~~~~~~~~~~yi~VttEwQ  134 (205)
T 1wmx_A           59 VQSGWWISLLTLRGWNTHDLSQYVENGYLEFDIKGKEGGEDFVIGFRDKVYE-R---VYGLEIDVTTVISNYVTVTTDWQ  134 (205)
T ss_dssp             CCSSCEEEEEESSTTSCBCCGGGTTTCEEEEEEEESSSCCCCEEEEEECCTT-C---TTCSSCEEEEEGGGTCCCCSSCE
T ss_pred             ccCceeEEEEeccCcceeehhhhhcCCeEEEEEecccCceeEEEEEeccccc-c---cCCceeEEEeechheEEeccccE
Confidence            6889988766542 2467898885   899999985  79999999987332 2   1233444332     23455899


Q ss_pred             EEEEeCCCceeeccccccCCCCCCCccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEec
Q 027018          161 IAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS  224 (229)
Q Consensus       161 tv~iPFs~F~~~~rG~~~~~~~~l~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~  224 (229)
                      -|.||+.+| .. .      ...+++.++..  |.+..        ...+||++-|+.|+....
T Consensus       135 HvsiPLkdF-M~-e------~td~dpr~~~~--fnlgk--------~~~~phtVwIDNIkLts~  180 (205)
T 1wmx_A          135 HVKIPLRDL-MK-I------NNGFDPSSVTC--LVFSK--------RYADPFTVWFSDIKITSE  180 (205)
T ss_dssp             EEEEEGGGT-SC-S------TTCCCTTSEEE--EEEEC--------SSSCCEEEEEEEEEEECC
T ss_pred             EEEeeHHHh-cc-c------cCCcCcccceE--EEecC--------CCCCceEEEEeeEEEEec
Confidence            999999999 22 1      23566766554  44442        468999999999987644

>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3

Probab=94.62  E-value=2.6  Score=38.70  Aligned_cols=143  Identities=17%  Similarity=0.189  Sum_probs=90.0

Q ss_pred             CCccEEEecCCcccccCeEEecCceecceeEEEEEEeeCCCccEEEEEEEEecccCCCCcccccCcceeEeeecCCCCCC
Q 027018           29 PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI  108 (229)
Q Consensus        29 ~~~~~l~~F~~~~~~~~W~~~~D~vmGG~S~s~~~~~~~~~g~~~~F~G~ls~e~p~~~~~~ln~gGFasvr~~~~~~~~  108 (229)
                      ++..++++|.+..  +.|..-+  .++|...+...   ..+| .....+.+.+.         ++.+| .+...   ...
T Consensus       312 ~~~~~~~df~~~~--~~w~~~~--~~~g~~~~~~~---~~~g-~~sl~~~~~~~---------~~~~~-~~~~~---~~~  370 (464)
T 1wky_A          312 TSPTTLYDFEEST--QGWTGSS--LSRGPWTVTEW---SSKG-NHSLKADIQMS---------SNSQH-YLHVI---QNR  370 (464)
T ss_dssp             --CEEEECCSSSC--TTEEEES--CSEEEEEESSC---CSST-TCEEEEEEEEC---------TTCEE-EEEEE---EEE
T ss_pred             CCCcccccccCCC--ccccccc--ccCCceeeccc---cccC-ceeEeeeeeec---------CCCce-EEEEe---ecc
Confidence            5567899998763  7898544  23443222111   1123 24555666555         45666 34443   568


Q ss_pred             CCCCCCeEEEEEeec-------CcEEEEEEEecCCcCCCCCCCCCceEEE--EEcCCCCeEEEEEeCCCceeeccccccC
Q 027018          109 DLDSYDTIAMKLKGD-------GRCYISTIYTENWVNSPGQQEDNSWQSF--VFVPKDNWYIAKIPLARYLPTWRGNVID  179 (229)
Q Consensus       109 dls~y~gi~lrvrGD-------Gr~Y~~~l~~~~~~~~~~~~~~~~yq~~--~~t~~g~W~tv~iPFs~F~~~~rG~~~~  179 (229)
                      ||++++.|.++|+-.       |-+=+|-++|...+         .|.-.  ....+++|.++.|+|+.-          
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~~~---------~w~~~~~~~i~~~~~~~l~~~l~~~----------  431 (464)
T 1wky_A          371 SLQQNSRIQATVKHANWGSVGNGMTARLYVKTGHGY---------TWYSGSFVPINGSSGTTLSLDLSNV----------  431 (464)
T ss_dssp             CCTTCCEEEEEEEEC-------CEEEEEEEEETTTT---------EEEECCCEEECSSSCEEEEEECTTC----------
T ss_pred             CCCCcceEEEEEEeccCCCCCCCeeEEEEEEeCCCc---------eEecCCceEecCCCceEEEEEcccC----------
Confidence            999999999999733       45667777875332         23321  233456899999999432          


Q ss_pred             CCCCCCccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEE
Q 027018          180 AEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKA  221 (229)
Q Consensus       180 ~~~~l~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a  221 (229)
                          -|++.|+.+||.+....      ...|.-.+-||+|.+
T Consensus       432 ----~~~~~~~~~gv~~~~~~------~~~~~~~~yvd~v~~  463 (464)
T 1wky_A          432 ----QNLSQVREIGVQFQSES------NSSGQTSIYIDNVIV  463 (464)
T ss_dssp             ----SCGGGEEEEEEEEEECT------TCCEEEEEEEEEEEE
T ss_pred             ----cchhhhhhEEEEEEcCC------CCCcceEEEEEEEEe
Confidence                16789999999998621      235788999999975

>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}

Probab=93.28  E-value=2.1  Score=35.07  Aligned_cols=84  Identities=11%  Similarity=0.217  Sum_probs=50.4

Q ss_pred             CCCCCCCC--eEEEEEeecC---cEEEEEEEecCCcCCCCCCCCCceEEEE-E------cCCCCeEEEEEeCCCceeecc
Q 027018          107 FIDLDSYD--TIAMKLKGDG---RCYISTIYTENWVNSPGQQEDNSWQSFV-F------VPKDNWYIAKIPLARYLPTWR  174 (229)
Q Consensus       107 ~~dls~y~--gi~lrvrGDG---r~Y~~~l~~~~~~~~~~~~~~~~yq~~~-~------t~~g~W~tv~iPFs~F~~~~r  174 (229)
                      +.| +.|.  .|.|++|-|-   ..-.+.+.|...        .  -...+ .      .+.|+|+++.||++- ...  
T Consensus        78 ~~D-s~y~~~aL~fd~rvd~ap~~~v~L~m~Cg~~--------~--C~~~vdit~~L~~~~~g~W~tv~IpL~C-a~~--  143 (193)
T 3f95_A           78 PLD-SKFSTGYLELKMRIDKAPEQGANLQVMCSES--------N--CLRDIDFSSFSQLMADKSWHTLAIPLHC-DDS--  143 (193)
T ss_dssp             ECC-GGGTTCEEEEEEEEEECCTTCEEEEEEECSS--------C--EEEEEEGGGTHHHHTTCCCEEEEEESCC------
T ss_pred             CcC-ChhhCceEEEEEEeecCCCCcEEEEEecCCC--------C--ccceeehhHhhhhccCCCCEEEEEeCcc-ccc--
Confidence            456 6664  4888887552   456777777521        0  11222 1      256899999999998 443  


Q ss_pred             ccccCCCCCCCccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEec
Q 027018          175 GNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS  224 (229)
Q Consensus       175 G~~~~~~~~l~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~  224 (229)
                              -.|+++|.+- |.+..          . ++.|.|..|+....
T Consensus       144 --------G~D~s~V~~P-f~L~t----------~-~~~lsianIrl~~~  173 (193)
T 3f95_A          144 --------DQAEQPITDA-LRITS----------Q-NLSLAIADVALTIK  173 (193)
T ss_dssp             ------------CEEEEE-EEEEE----------S-SEEEEEEEEEEESS
T ss_pred             --------CCCHHHcCCc-cEEEe----------C-CcEEEEEEEEEecC
Confidence                    3666666654 55553          3 89999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1v0aa1	167	b.18.1.30 (A:4-170) Endoglucanase H {Clostridium t	2e-07

>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]} Length = 167

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM11
domain: Endoglucanase H
species: Clostridium thermocellum [TaxId: 1515]

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 30/194 (15%), Positives = 51/194 (26%), Gaps = 36/194 (18%)

Query: 30  SERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKW 89
            E+ + +F   E +  W  YS       +  S +I     G     S   +         
Sbjct: 3   GEKMLDDF---EGVLNWGSYSG----EGAKVSTKIVSGKTGNGMEVSYTGTT-------- 47

Query: 90  NISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKG-DGRCYISTIYTENWVNSPGQQEDNSW 148
                G+ G      D   D   +  I+  +K  DG              +     D   
Sbjct: 48  ----DGYWGTVYSLPD--GDWSKWLKISFDIKSVDGSANEIRFMIAEKSINGVG--DGEH 99

Query: 149 QSFVFVPKDNWYIAKIPLARYLPTWRGN--VIDAEMEMNPSRVVGMSLSVNAEGGVPGAK 206
             +   P  +W   +IP + +           D    ++   +  +              
Sbjct: 100 WVYSITPDSSWKTIEIPFSSFRRRLDYQPPGQDMSGTLDLDNIDSIHFMYANN------- 152

Query: 207 SGPGDFRVEVDWIK 220
              G F   VD IK
Sbjct: 153 -KSGKF--VVDNIK 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1v0aa1	167	Endoglucanase H {Clostridium thermocellum [TaxId:	99.9
d1wmxa_	173	Endoglucanase CelJ {Clostridium thermocellum [TaxI	98.3

>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM11
domain: Endoglucanase H
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.90  E-value=2.7e-22  Score=161.92  Aligned_cols=159  Identities=16%  Similarity=0.209  Sum_probs=115.1

Q ss_pred             CccEEEecCCcccccCeEEecCceecceeEEEEEEeeCCCccEEEEEEEEecccCCCCcccccCcceeEeeecCCCCCCC
Q 027018           30 SERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFID  109 (229)
Q Consensus        30 ~~~~l~~F~~~~~~~~W~~~~D~vmGG~S~s~~~~~~~~~g~~~~F~G~ls~e~p~~~~~~ln~gGFasvr~~~~~~~~d  109 (229)
                      .+++|+||.+.   ..|..    ++|+.|++.+.......+..+++.  .+..         ++|||..++ ..  .+.|
T Consensus         3 ge~vidDFe~~---~~W~~----~~~~~~~~~~~~~~~~~~~~~~l~--~~~~---------~~g~~~~~~-~~--~~~D   61 (167)
T d1v0aa1           3 GEKMLDDFEGV---LNWGS----YSGEGAKVSTKIVSGKTGNGMEVS--YTGT---------TDGYWGTVY-SL--PDGD   61 (167)
T ss_dssp             SEEEEECSSSS---CCCEE----EEETTCEEEEEEEECSSSEEEEEE--EECC---------SSCEEEEEE-EC--SCCC
T ss_pred             ccEEEEcCcCC---cccee----cCCCCceEEEEecccCCCceEEEE--Eeee---------cCCcEEEEE-ec--CcCC
Confidence            57899999764   46965    456678888877665444334444  4444         355555444 43  4689


Q ss_pred             CCCCCeEEEEEe---ecCcEEEEEEEecCCcCCCCCCCCCceEEEEEcCCCCeEEEEEeCCCceeecccccc--CCCCCC
Q 027018          110 LDSYDTIAMKLK---GDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKIPLARYLPTWRGNVI--DAEMEM  184 (229)
Q Consensus       110 ls~y~gi~lrvr---GDGr~Y~~~l~~~~~~~~~~~~~~~~yq~~~~t~~g~W~tv~iPFs~F~~~~rG~~~--~~~~~l  184 (229)
                      |+.|+||+|+||   |++++|.++|++......   .....|.+ .++.+++|++|+|||++|+++..++++  +...+|
T Consensus        62 ~s~~~gi~~~vkg~~G~~~~~~~~l~d~~~~~~---~~~~~~~~-~f~~~~~W~~V~IPF~~F~~~~~~~~~~~~~~~~l  137 (167)
T d1v0aa1          62 WSKWLKISFDIKSVDGSANEIRFMIAEKSINGV---GDGEHWVY-SITPDSSWKTIEIPFSSFRRRLDYQPPGQDMSGTL  137 (167)
T ss_dssp             CTTCCEEEEEEEEC---CCCEEEEEEEECTTSS---SEEEEEEE-EECCCSSCEEEEEEGGGCEECCSCCCTTCCCCSSC
T ss_pred             CccCCeEEEEEECCCCCceEEEEEEEcCCcCCC---CcccEEEE-EEecCCccEEEEEEHHHcccccccCcccCCCcccc
Confidence            999999999999   678999999998753210   11123443 467788999999999999999877764  456799


Q ss_pred             CccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEe
Q 027018          185 NPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALR  223 (229)
Q Consensus       185 ~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~  223 (229)
                      |+++|.+|+|++.+        +++|+|  +||+|++|.
T Consensus       138 dls~i~~~~~~~~~--------g~~G~f--~iD~i~l~g  166 (167)
T d1v0aa1         138 DLDNIDSIHFMYAN--------NKSGKF--VVDNIKLIG  166 (167)
T ss_dssp             CTTSEEEEEEEESS--------SCCEEE--EEEEEEEEC
T ss_pred             ChHHeEEEEEEECC--------CCCccE--EEEEEEEec
Confidence            99999999999986        777877  599999984

>d1wmxa_ b.18.1.24 (A:) Endoglucanase CelJ {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Family 30 carbohydrate binding module, CBM30 (PKD repeat)
domain: Endoglucanase CelJ
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.30  E-value=1.5e-05  Score=63.11  Aligned_cols=108  Identities=19%  Similarity=0.169  Sum_probs=72.7

Q ss_pred             CcceeEeeecC-CCCCCCCCCCCe---EEEEEeec--CcEEEEEEEecCCcCCCCCCCCCce--EEEE----EcCCCCeE
Q 027018           93 RSGFCGMRSKK-FDGFIDLDSYDT---IAMKLKGD--GRCYISTIYTENWVNSPGQQEDNSW--QSFV----FVPKDNWY  160 (229)
Q Consensus        93 ~gGFasvr~~~-~~~~~dls~y~g---i~lrvrGD--Gr~Y~~~l~~~~~~~~~~~~~~~~y--q~~~----~t~~g~W~  160 (229)
                      .++|. +.... -....||+.|..   |+|.+|+.  +..+.+.+.+.....     ....+  .+..    .+..++||
T Consensus        54 ~~w~g-~gl~~~~~~~~DlS~~~a~G~L~FdiK~~s~~~~~~igf~~~~~~~-----~~~~~~~~~~~~~~~~~vt~eW~  127 (173)
T d1wmxa_          54 SGWWI-SLLTLRGWNTHDLSQYVENGYLEFDIKGKEGGEDFVIGFRDKVYER-----VYGLEIDVTTVISNYVTVTTDWQ  127 (173)
T ss_dssp             SSCEE-EEEESSTTSCBCCGGGTTTCEEEEEEEESSSCCCCEEEEEECCTTC-----TTCSSCEEEEEGGGTCCCCSSCE
T ss_pred             CCeeE-EEEEccCCccccchhhhcCCcEEEEEEccCCCcceEEEEEeccccC-----CCceEEecccCCcccceecCceE
Confidence            34444 44433 234689999954   99999976  466888888864321     11111  1111    23477999


Q ss_pred             EEEEeCCCceeeccccccCCCCCCCccCeeEEEEEEEeCCCCCCCCcCCeeEEEEEeEEEEEec
Q 027018          161 IAKIPLARYLPTWRGNVIDAEMEMNPSRVVGMSLSVNAEGGVPGAKSGPGDFRVEVDWIKALRS  224 (229)
Q Consensus       161 tv~iPFs~F~~~~rG~~~~~~~~l~~~~I~~ig~~~~~~~g~~~~~~~~G~F~LeI~~I~a~~~  224 (229)
                      ++.||+++|....        ..+|+++|+++-|..          ...++|.+-||.|+.+.+
T Consensus       128 ~~~ipl~~l~~~~--------~~~dl~~i~~i~~~~----------~~~~~~~~~iDdIkit~e  173 (173)
T d1wmxa_         128 HVKIPLRDLMKIN--------NGFDPSSVTCLVFSK----------RYADPFTVWFSDIKITSE  173 (173)
T ss_dssp             EEEEEGGGTSCST--------TCCCTTSEEEEEEEC----------SSSCCEEEEEEEEEEECC
T ss_pred             EEEEEhHHhhccc--------cCcChhHceEEEEEe----------cCCCceEEEEEEEEEecC
Confidence            9999999997543        248999999775543          456889999999998753