Citrus Sinensis ID: 027026

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MASHLGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ
cccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccEEEEEcccEEEEEEEccccccccEEEEEEccEEEEEEEEEEcEEEcccccEEEEEcccccEEEEEEEEEEEcccccccccEEEEEcccEEEEEccccccccccEEEEEc
ccccccccccccccccccccccccccHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccEEEEEEEccccccccEEEEEEccEEEEEEEEEEEEcccccccEEEccccccccccccEEEEEEccccccHHHEEEEEcccEEEEEEccccccccEEEEEEc
mashlgictpcaseiitgfpsyrsppllrnrdfCGRIKAVadnrgsldhlqrsslnqsqpkkraapvsspgiwdsfpaARTVQQMMETMERImedpfaygvtwpsqqervrsgyrrgrtpwaireteNDYKirldvpgmsrndvKVRVEESMLVIKAEKAQrneantdgstveeeeewpsngygsystrialpdnveFEKIQAEVKDGVLyitipkasstakivdinvq
MASHLGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVAdnrgsldhlqrsslnqsqpkkraapvsspgiwdsFPAARTVQQMMETMERIMEDPfaygvtwpsqqervrsgyrrgrtpwairetendykirldvpgmsrndvkVRVEESMLVIkaekaqrneantdgstveeeeewpsngygSYSTRIALPDNVEFEKIQAEVKDGVLYItipkasstakivdinvq
MASHLGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ
****LGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVA*******************************W***************MERIMEDPFAYGVTWPS****VRSGYRRGRTPWAIRETENDYKIRLDVP*********************************************YGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIV*****
************************************************************************WDSFPAARTVQQMMETMERIMEDPFAYGVTWP********GYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLV*********************EEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS*******INV*
MASHLGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHL******************SPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKA*********************GYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ
*****************************************************************PVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASHLGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query229 2.2.26 [Sep-21-2011]
Q95661235 Small heat shock protein, N/A no 0.860 0.838 0.358 2e-30
P09886232 Small heat shock protein, N/A no 0.868 0.857 0.336 6e-30
P09887181 Small heat shock protein, no no 0.755 0.955 0.371 6e-30
P30222241 Small heat shock protein, N/A no 0.685 0.651 0.404 2e-29
P31170227 25.3 kDa heat shock prote yes no 0.930 0.938 0.358 2e-29
Q10P60240 26.7 kDa heat shock prote yes no 0.746 0.712 0.335 1e-21
Q00445238 Small heat shock protein, N/A no 0.742 0.714 0.324 3e-21
Q9SSQ8232 26.5 kDa heat shock prote no no 0.427 0.422 0.382 2e-15
P11890204 Small heat shock protein, N/A no 0.589 0.661 0.321 3e-14
Q96331210 23.6 kDa heat shock prote no no 0.611 0.666 0.316 3e-14
>sp|Q95661|HS21C_SOLLC Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1 Back     alignment and function desciption
 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 126/234 (53%), Gaps = 37/234 (15%)

Query: 7   ICTPCASEIITGFPSYRSPPLLRNRDFCGRI--KAVADNRGSLDHLQRSSL----NQS-- 58
           +  PC+  +    PS R P          R+  +A  DN+ +   +  SS     NQ   
Sbjct: 28  VSAPCSVFV----PSMRRP--------TTRLVARATGDNKDTSVDVHHSSAQGGNNQGTA 75

Query: 59  ---QPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYR 115
              +P + A  VS  G+ D     RT++QM++TM+R+ ED     +T+P +     SG  
Sbjct: 76  VERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDT----MTFPGRNRA--SGTG 129

Query: 116 RGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEE 175
             RTPW I + EN+ K+R D+PG+S+ DVKV VE  MLVIK E  +  +         ++
Sbjct: 130 EIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDG-------RDK 182

Query: 176 EEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ 229
             W  N Y SY TR++LPDNV  +KI+AE+K+GVL+I+IPK     K++D+ + 
Sbjct: 183 HSWGRN-YSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQIN 235

Solanum lycopersicum (taxid: 4081)
>sp|P09886|HS21C_PEA Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1 Back     alignment and function description
>sp|P09887|HS22C_SOYBN Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1 Back     alignment and function description
>sp|P30222|HS22C_PETHY Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1 Back     alignment and function description
>sp|P31170|HS25P_ARATH 25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1 Back     alignment and function description
>sp|Q10P60|HS26P_ORYSJ 26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1 Back     alignment and function description
>sp|Q00445|HS21C_WHEAT Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSQ8|HS26M_ARATH 26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1 Back     alignment and function description
>sp|P11890|HS23C_CHERU Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1 Back     alignment and function description
>sp|Q96331|HS23M_ARATH 23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
224107693193 predicted protein [Populus trichocarpa] 0.825 0.979 0.638 5e-60
255547914253 heat shock protein, putative [Ricinus co 0.842 0.762 0.564 1e-58
350535865221 small heat shock protein [Solanum lycope 0.882 0.914 0.522 5e-55
449435033232 PREDICTED: 25.3 kDa heat shock protein, 0.842 0.831 0.611 9e-55
22530884221 small heat shock protein [Solanum lycope 0.882 0.914 0.513 1e-54
388252836219 small heat shock protein [Musa acuminata 0.820 0.858 0.573 1e-52
359806356226 uncharacterized protein LOC100791734 [Gl 0.943 0.955 0.472 2e-52
225425914226 PREDICTED: 25.3 kDa heat shock protein, 0.816 0.827 0.593 2e-51
134103862236 chloroplast small heat shock protein [Ep 0.825 0.800 0.574 3e-51
357459739235 Small heat shock protein [Medicago trunc 0.868 0.846 0.492 9e-51
>gi|224107693|ref|XP_002314566.1| predicted protein [Populus trichocarpa] gi|222863606|gb|EEF00737.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 145/191 (75%), Gaps = 2/191 (1%)

Query: 41  ADNRGSLDHLQRSSLN--QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFA 98
           A++R +LDHLQR+  N  QSQ KKR AP +  G+WD FP ARTVQQMMETMER+MEDPF 
Sbjct: 3   AESRENLDHLQRARKNPQQSQHKKRVAPAAPIGLWDRFPTARTVQQMMETMERVMEDPFV 62

Query: 99  YGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAE 158
           Y   WPS      SGY RGRTPW I+E E++YK+R D+PGM++ DVKV VEE MLV+KAE
Sbjct: 63  YSGRWPSPLPVEGSGYSRGRTPWEIKEGEDEYKMRFDMPGMTKEDVKVWVEEKMLVVKAE 122

Query: 159 KAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKAS 218
           K  +   N   +  EEE EW +  YG YS+RIALP+N++FEKI AEVKDGVLYITIPKAS
Sbjct: 123 KVPQKTVNGVENGEEEEGEWSAKSYGRYSSRIALPENIQFEKITAEVKDGVLYITIPKAS 182

Query: 219 STAKIVDINVQ 229
           +TAKI DINVQ
Sbjct: 183 ATAKIHDINVQ 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547914|ref|XP_002515014.1| heat shock protein, putative [Ricinus communis] gi|223546065|gb|EEF47568.1| heat shock protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|350535865|ref|NP_001234217.1| small heat shock protein [Solanum lycopersicum] gi|22530880|gb|AAM96944.1| small heat shock protein [Solanum lycopersicum] gi|22530882|gb|AAM96945.1| small heat shock protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449435033|ref|XP_004135300.1| PREDICTED: 25.3 kDa heat shock protein, chloroplastic-like [Cucumis sativus] gi|449512976|ref|XP_004164194.1| PREDICTED: 25.3 kDa heat shock protein, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|22530884|gb|AAM96946.1| small heat shock protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|388252836|gb|AFK24464.1| small heat shock protein [Musa acuminata AAA Group] Back     alignment and taxonomy information
>gi|359806356|ref|NP_001241231.1| uncharacterized protein LOC100791734 [Glycine max] gi|255642177|gb|ACU21353.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225425914|ref|XP_002272065.1| PREDICTED: 25.3 kDa heat shock protein, chloroplastic [Vitis vinifera] gi|147811558|emb|CAN74268.1| hypothetical protein VITISV_036834 [Vitis vinifera] Back     alignment and taxonomy information
>gi|134103862|gb|ABO60880.1| chloroplast small heat shock protein [Epilobium amurense] Back     alignment and taxonomy information
>gi|357459739|ref|XP_003600150.1| Small heat shock protein [Medicago truncatula] gi|355489198|gb|AES70401.1| Small heat shock protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
TAIR|locus:2137762227 HSP21 "AT4G27670" [Arabidopsis 0.903 0.911 0.362 2.3e-30
UNIPROTKB|Q10P60240 HSP26.7 "26.7 kDa heat shock p 0.746 0.712 0.351 1.4e-25
TAIR|locus:2122649210 HSP23.6-MITO "AT4G25200" [Arab 0.834 0.909 0.327 9.5e-18
TAIR|locus:2035079232 AT1G52560 "AT1G52560" [Arabido 0.449 0.443 0.379 2.5e-17
TAIR|locus:2163670210 AT5G51440 "AT5G51440" [Arabido 0.598 0.652 0.343 3.3e-15
TIGR_CMR|GSU_2678194 GSU_2678 "heat shock protein, 0.733 0.865 0.264 3.4e-13
UNIPROTKB|B7EZJ7219 HSP23.6 "23.6 kDa heat shock p 0.445 0.465 0.324 1.5e-12
UNIPROTKB|Q943E7149 HSP16.9C "16.9 kDa class I hea 0.497 0.765 0.299 5e-12
TAIR|locus:2042977153 AT2G29500 "AT2G29500" [Arabido 0.545 0.816 0.307 5e-12
TAIR|locus:2024997157 AT1G07400 [Arabidopsis thalian 0.510 0.745 0.297 5e-12
TAIR|locus:2137762 HSP21 "AT4G27670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 84/232 (36%), Positives = 127/232 (54%)

Query:     7 ICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSL--NQS-----Q 59
             +C+P A        S     +   R    RI+A      S+D +Q+     NQ      +
Sbjct:    12 LCSPLAPSPSVSSKSATPFSVSFPRKIPSRIRAQDQRENSIDVVQQGQQKGNQGSSVEKR 71

Query:    60 PKKRAAPVSSP-GIWDSFPAARTVQQMMETMERIMEDPFAYGVTWP-SQQERVRSGYRRG 117
             P++R     SP G+ D     RT++QM++TM+R+ ED      T P S + R  SG    
Sbjct:    72 PQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFED------TMPVSGRNRGGSGVSEI 125

Query:   118 RTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEE 177
             R PW I+E E++ K+R D+PG+S+ DVK+ VE+++LVIK E  Q+ E        + ++ 
Sbjct:   126 RAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGE--QKKE--------DSDDS 175

Query:   178 WPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ 229
             W      SY TR+ LPDN E +KI+AE+K+GVL+ITIPK     K++D+ +Q
Sbjct:   176 WSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQIQ 227
GO:0009408 "response to heat" evidence=IEP;ISS;RCA
GO:0009507 "chloroplast" evidence=ISM;NAS
GO:0009644 "response to high light intensity" evidence=IEP;RCA
GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA
GO:0006457 "protein folding" evidence=RCA
GO:0010286 "heat acclimation" evidence=RCA
UNIPROTKB|Q10P60 HSP26.7 "26.7 kDa heat shock protein, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2122649 HSP23.6-MITO "AT4G25200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035079 AT1G52560 "AT1G52560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163670 AT5G51440 "AT5G51440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2678 GSU_2678 "heat shock protein, Hsp20 family" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|B7EZJ7 HSP23.6 "23.6 kDa heat shock protein, mitochondrial" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E7 HSP16.9C "16.9 kDa class I heat shock protein 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2042977 AT2G29500 "AT2G29500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024997 AT1G07400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P31170HS25P_ARATHNo assigned EC number0.35800.93010.9383yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_X000514
hypothetical protein (193 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00012051
hypothetical protein (142 aa)
  •     0.446

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 6e-26
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 4e-22
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 4e-22
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 2e-21
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 2e-16
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 5e-16
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 2e-08
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 1e-07
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information 
 Score = 96.1 bits (240), Expect = 6e-26
 Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 7/94 (7%)

Query: 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG 182
           + ET++ Y +  D+PG  + D+KV VE+ +L I  E+ +  E   +    E         
Sbjct: 2   VYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRE-------RS 54

Query: 183 YGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPK 216
           YGS+S    LP++V+ +KI+A +++GVL IT+PK
Sbjct: 55  YGSFSRSFRLPEDVDPDKIKASLENGVLTITLPK 88

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 229
PRK10743137 heat shock protein IbpA; Provisional 99.95
PRK11597142 heat shock chaperone IbpB; Provisional 99.94
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.94
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.91
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.9
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.89
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.89
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.87
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.86
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.86
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.85
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.84
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.83
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.83
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.81
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.81
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.8
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.79
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.79
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.66
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.5
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.5
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.26
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 99.02
cd0646384 p23_like Proteins containing this p23_like domain 98.97
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.75
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.46
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 98.16
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 97.96
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 97.95
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 97.93
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.79
cd0646892 p23_CacyBP p23_like domain found in proteins simil 97.72
cd0648887 p23_melusin_like p23_like domain similar to the C- 97.6
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 97.32
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 97.11
KOG1309 196 consensus Suppressor of G2 allele of skp1 [Signal 96.4
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 96.31
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 96.16
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 96.04
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 95.71
PF13349166 DUF4097: Domain of unknown function (DUF4097) 86.92
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 86.91
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information 
Probab=99.95  E-value=6.8e-27  Score=187.48  Aligned_cols=102  Identities=21%  Similarity=0.471  Sum_probs=87.9

Q ss_pred             CcCeEEEE-eCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCc
Q 027026          118 RTPWAIRE-TENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV  196 (229)
Q Consensus       118 ~p~~dI~E-~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~v  196 (229)
                      .|++||.+ ++++|+|.++|||++++||+|++++|.|+|+|+++...        +++++++.|+++|+|+|+|.||++|
T Consensus        34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~--------~~~~~~~~Er~~g~F~R~~~LP~~V  105 (137)
T PRK10743         34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQ--------KERTYLYQGIAERNFERKFQLAENI  105 (137)
T ss_pred             CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccc--------cCCcEEEEEEECCEEEEEEECCCCc
Confidence            48899994 89999999999999999999999999999999975421        3467899999999999999999999


Q ss_pred             ccCceEEEEECCEEEEEEeccCC-CCCceEeecC
Q 027026          197 EFEKIQAEVKDGVLYITIPKASS-TAKIVDINVQ  229 (229)
Q Consensus       197 d~~~IkA~~~nGvL~ItiPK~~~-~~k~i~I~iq  229 (229)
                      |.+  +|+|+||||+|++||.+. ..+...|+|+
T Consensus       106 d~~--~A~~~dGVL~I~lPK~~~~~~~~r~I~I~  137 (137)
T PRK10743        106 HVR--GANLVNGLLYIDLERVIPEAKKPRRIEIN  137 (137)
T ss_pred             ccC--cCEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence            998  599999999999999643 3445556654

>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>PF13349 DUF4097: Domain of unknown function (DUF4097) Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
3gla_A100 Crystal Structure Of The Hspa From Xanthomonas Axon 1e-07
3gt6_A103 Crystal Structure Of The Hspa From Xanthomonas Axon 2e-07
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 100 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 123 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNG 182
           I+E  N + +  D+PG+  + ++V++++ +L I+ E+       ++ ST  E        
Sbjct: 9   IKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGER------KSESSTETERFSRIERR 62
Query: 183 YGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPK 216
           YGS+  R ALPD+ + + I A  ++GVL I IPK
Sbjct: 63  YGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 103 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 1e-28
1gme_A151 Heat shock protein 16.9B; small heat shock protein 9e-28
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 2e-27
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 4e-24
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 2e-17
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 1e-16
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 2e-16
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 1e-15
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 2e-15
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 6e-12
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
 Score =  104 bits (262), Expect = 1e-28
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 17/164 (10%)

Query: 73  WDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWA---------I 123
            D F      ++M +              +                             I
Sbjct: 4   RDPF--DSLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISI 61

Query: 124 RETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGY 183
            E +   K+   +PG+++ D+ +      L I+A+++      ++     E  E      
Sbjct: 62  IEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPE-----E 116

Query: 184 GSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKA-SSTAKIVDI 226
                 I LP  V+ E   A+ ++GVL + +PKA SS  K ++I
Sbjct: 117 EEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 160
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.95
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.94
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.94
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.94
4fei_A102 Heat shock protein-related protein; stress respons 99.93
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.9
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.88
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.87
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.86
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.85
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.84
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.79
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.97
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.96
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.25
3igf_A374 ALL4481 protein; two-domained protein consisting o 98.24
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.18
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 97.8
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 97.77
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 97.71
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.7
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 97.66
2o30_A131 Nuclear movement protein; MCSG, structural genomic 97.58
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 97.54
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 97.32
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 97.16
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 96.96
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
Probab=99.95  E-value=1.8e-27  Score=194.02  Aligned_cols=106  Identities=25%  Similarity=0.351  Sum_probs=91.8

Q ss_pred             CCcCeEEEEeCCEEEEEEEcCCCCCCceEEEEECCEEEEEEEEecccccCCCCCCCCCceeeeee-eeeeEEEEEECCCC
Q 027026          117 GRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSN-GYGSYSTRIALPDN  195 (229)
Q Consensus       117 ~~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er-~~g~f~r~i~LP~~  195 (229)
                      ..+|+||+|++++|+|.++|||++++||+|+++++.|+|+|+++.....      +.+.+++.|| .+|.|.|+|.||.+
T Consensus        55 ~~~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~------~~~~~~~~Er~~~g~f~R~~~LP~~  128 (161)
T 4eld_A           55 GFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMIT------ESERIIYSEIPEEEEIYRTIKLPAT  128 (161)
T ss_dssp             SCCCEEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCC------SSCEEEEECSCCCCEEEEEEECSSC
T ss_pred             cccceeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccC------CCceEEEEEeeccccEEEEEECCCC
Confidence            3556999999999999999999999999999999999999998654332      3456888999 99999999999999


Q ss_pred             cccCceEEEEECCEEEEEEeccCCCCCceEeecC
Q 027026          196 VEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ  229 (229)
Q Consensus       196 vd~~~IkA~~~nGvL~ItiPK~~~~~k~i~I~iq  229 (229)
                      ||.++|+|+|+||||+|++||.+.. +...|+||
T Consensus       129 vd~~~i~A~~~nGvL~I~lpK~~~~-~~r~I~Ie  161 (161)
T 4eld_A          129 VKEENASAKFENGVLSVILPKAESS-IKKGINIE  161 (161)
T ss_dssp             BCGGGCEEEEETTEEEEEEEBCGGG-SCCCCCCC
T ss_pred             cccccEEEEEECCEEEEEEEcCCCC-CCcEeecC
Confidence            9999999999999999999998653 34445544
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 229
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 4e-20
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 1e-16
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 80.1 bits (197), Expect = 4e-20
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 116 RGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEE 175
           +G  P +I E +   K+   +PG+++ D+ +      L I+A+++      +     E  
Sbjct: 8   KGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITES-----ERI 62

Query: 176 EEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKA-SSTAKIVDI 226
                         I LP  V+ E   A+ ++GVL + +PKA SS  K ++I
Sbjct: 63  IYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 114
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.95
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.92
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 98.26
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 97.48
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 97.21
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 96.94
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 96.91
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 85.77
d1vqoe179 Ribosomal protein L6 {Archaeon Haloarcula marismor 85.06
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.95  E-value=8.4e-28  Score=192.00  Aligned_cols=141  Identities=23%  Similarity=0.417  Sum_probs=107.6

Q ss_pred             CcCCCCchhhHHHHHHHHHHHHhcCcccCCCCCCccccccccccCCCCcCeEEEEeCCEEEEEEEcCCCCCCceEEEEEC
Q 027026           71 GIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEE  150 (229)
Q Consensus        71 ~~~dpf~~~r~~~~m~~~mdr~fe~~~~~~~~~p~~~~~~~~~~~~~~p~~dI~E~~d~y~l~~dLPG~~kedV~V~v~~  150 (229)
                      ++||||+.+  +.++++.|+.++........          .....+.|++||.|++++|+|+++|||++++||+|++++
T Consensus         7 ~~fDpF~d~--~~d~f~~~~~~~~~~~~~~~----------~~~~~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~   74 (150)
T d1gmea_           7 NVFDPFADL--WADPFDTFRSIVPAISGGGS----------ETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVED   74 (150)
T ss_dssp             CCBCTTCGG--GSSHHHHHHHHGGGTTSSCC----------SHHHHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEET
T ss_pred             CCcCCchhh--hhchhhhhhhhhhccccccc----------cccccCCCceeEEECCCEEEEEEEeCCCccCCEEEEEEE
Confidence            356777543  23444555555544322211          011124678999999999999999999999999999986


Q ss_pred             -CEEEEEEEEecccccCCCCCCCCCceeeeeeeeeeEEEEEECCCCcccCceEEEEECCEEEEEEeccCCC-CCceEeec
Q 027026          151 -SMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASST-AKIVDINV  228 (229)
Q Consensus       151 -~~L~I~g~~~~~~~~~~~~~~~~~~~~~~er~~g~f~r~i~LP~~vd~~~IkA~~~nGvL~ItiPK~~~~-~k~i~I~i  228 (229)
                       +.|+|+|++....+.      ++..++..|+.+|.|+|+|.||.+||.++|+|.|+||||+|+|||.+.. .+.+.|+|
T Consensus        75 ~~~l~i~~~~~~~~~~------~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lpK~~~~~~~~~~I~I  148 (150)
T d1gmea_          75 GNVLVVSGERTKEKED------KNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQI  148 (150)
T ss_dssp             TTEEEEEECCCCCCCC------TTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEECCCCCTTCCCCCCC
T ss_pred             ccceeEEEEEeccccc------ccceeeeeeeccceEEEEEECCCCeeeceeEEEEECCEEEEEEEcCCcCCCCceEEec
Confidence             578999987654433      4567888999999999999999999999999999999999999998653 56677776


Q ss_pred             C
Q 027026          229 Q  229 (229)
Q Consensus       229 q  229 (229)
                      .
T Consensus       149 ~  149 (150)
T d1gmea_         149 S  149 (150)
T ss_dssp             C
T ss_pred             c
Confidence            3
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure