Citrus Sinensis ID: 027028

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHccccHHHEcccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHccHHHHccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mgkvfasnplslnvpdpafeswlrdsgylEILDtatttsanavttastketttaTTITHSLLHYLYTFISLLtvnpfaklttddfsaktpswTREFIGalgsysfpssphtlklRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKfcsdkwnwdrypvIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFrklspskqpsrir
Flexible Loop (DISEMBL)
mgkvfasnplslnvpdpAFESWLRDSGYLEILDTatttsanavttastketttaTTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFrklspskqpsrir
Low Complexity Region (SEG)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDtatttsanavttastketttattitHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR
Disordered region (IsUnstruct)
*****************AFESWLRDSGYLEILDTA************************SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFR************
Disordered Region (DISOPRED)
******SNPLSLNVPDPAFESWLRDSG****************************************FISLLTVNPFAKLTT**F*AKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAF*************
Disordered Region (DISEMBL)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRK***********
Disordered Region (DISPRO)
********PLSLNVPDPAFESWLRDSGYLEILDTA********************TITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSP********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q8LFP1	241	PRA1 family protein H OS=	yes	no	0.982	0.933	0.602	4e-76

>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1

 Score =  284 bits (726), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 144/239 (60%), Positives = 181/239 (75%), Gaps = 14/239 (5%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
             ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query: 171 YPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
           +P +R++ + I QCAT V+L  LNVQMALF ALAISY VMILHA FRKL+PSK+P+R R
Sbjct: 183 HPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSKKPTRGR 241

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
255584403	235	conserved hypothetical protein [Ricinus	0.986	0.961	0.666	6e-83
224128244	232	predicted protein [Populus trichocarpa]	0.986	0.974	0.675	1e-81
224114888	229	predicted protein [Populus trichocarpa]	0.986	0.986	0.662	5e-79
225461516	233	PREDICTED: PRA1 family protein H-like [V	0.995	0.978	0.611	1e-75
302142972	231	unnamed protein product [Vitis vinifera]	0.978	0.969	0.617	2e-75
449456631	235	PREDICTED: PRA1 family protein H-like is	0.978	0.953	0.608	1e-74
449507067	235	PREDICTED: PRA1 family protein H-like is	0.978	0.953	0.608	2e-74
18417012	241	PRA1-like protein H [Arabidopsis thalian	0.982	0.933	0.602	2e-74
297799228	241	hypothetical protein ARALYDRAFT_492039 [	0.982	0.933	0.598	8e-74
388499328	229	unknown [Medicago truncatula]	0.986	0.986	0.663	1e-71

>gi|255584403|ref|XP_002532934.1| conserved hypothetical protein [Ricinus communis] gi|223527298|gb|EEF29450.1| conserved hypothetical protein [Ricinus communis]

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 156/234 (66%), Positives = 183/234 (78%), Gaps = 8/234 (3%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITH---- 59
           VF+SNPLSL+VPDPAFESWLRDSGYLE+LD  ++++A   T  +   + + T        
Sbjct: 2   VFSSNPLSLSVPDPAFESWLRDSGYLELLDHRSSSTAATSTPTTASTSNSTTATAATITG 61

Query: 60  ----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR 115
               SL  +  T ISL T+NP +KLTTDDFS +TPSWTR F G  GSYSFPS+    +LR
Sbjct: 62  GFFISLFSHFITLISLFTLNPLSKLTTDDFSGQTPSWTRVFFGDFGSYSFPSNADQARLR 121

Query: 116 VHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIR 175
           VHENVKRYARNYASLFILFFAC+LYQMPLAL+GLISSLALWD  KFCSD+W W++YPVIR
Sbjct: 122 VHENVKRYARNYASLFILFFACTLYQMPLALIGLISSLALWDVLKFCSDRWGWEQYPVIR 181

Query: 176 QVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
           QVL+R AQCAT V+L+ LNVQMALFCAL +SY VMILHAAFRKL+P+KQ  R R
Sbjct: 182 QVLIRTAQCATAVILIYLNVQMALFCALCVSYAVMILHAAFRKLTPAKQHPRQR 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128244|ref|XP_002329116.1| predicted protein [Populus trichocarpa] gi|222869785|gb|EEF06916.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/231 (67%), Positives = 184/231 (79%), Gaps = 5/231 (2%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITH---- 59
           VF+SNPLSL+VPD  F+SWLRDSGYLEILD  +++SA A    ++  T+T TT T     
Sbjct: 2   VFSSNPLSLSVPDTTFDSWLRDSGYLEILDQHSSSSAAAAPATTSTITSTTTTATATGLF 61

Query: 60  -SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            S   ++ T +SL T+NPF+KLTTDDFS +TPSWTR F    GSYSFPS     +LRV+E
Sbjct: 62  ISFFSHILTLLSLFTLNPFSKLTTDDFSGQTPSWTRSFFADCGSYSFPSGSDQARLRVNE 121

Query: 119 NVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVL 178
           NVKRYARNYASLFILFFAC+LYQMPLAL+GLISSLALWD FKFCSD+W WDRYPV+RQV+
Sbjct: 122 NVKRYARNYASLFILFFACTLYQMPLALIGLISSLALWDVFKFCSDRWGWDRYPVLRQVM 181

Query: 179 VRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
           VR AQC T VVL+ LNVQMA FCA+ ISY VM+LHAAFRKL+P+KQ +R R
Sbjct: 182 VRTAQCVTAVVLICLNVQMAFFCAVGISYTVMVLHAAFRKLTPAKQSARSR 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114888|ref|XP_002316885.1| predicted protein [Populus trichocarpa] gi|222859950|gb|EEE97497.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 151/228 (66%), Positives = 181/228 (79%), Gaps = 2/228 (0%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDT--ATTTSANAVTTASTKETTTATTITHSL 61
           VF+SNPLSL+VPDP F++WLRDSGYLEILD   +   + +  TT++T  TTTAT +  S 
Sbjct: 2   VFSSNPLSLSVPDPTFDTWLRDSGYLEILDQHSSAAAAPSTTTTSTTTTTTTATGLFISF 61

Query: 62  LHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVK 121
             +  T +SL T+NPF+KLTTDDFS  TPSWTR F     SYSFPS     +LRV+ENVK
Sbjct: 62  FSHALTLLSLFTLNPFSKLTTDDFSGPTPSWTRSFFADHRSYSFPSGFGQARLRVNENVK 121

Query: 122 RYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRI 181
           RYARNYA LF+LFF C+LYQMPLAL+G+ISSLALWD FKFCSD+W WDRYPVIRQV+VR 
Sbjct: 122 RYARNYAFLFVLFFVCTLYQMPLALIGMISSLALWDIFKFCSDRWGWDRYPVIRQVMVRA 181

Query: 182 AQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
           AQC   V+L+ LNVQMALFCAL +SY VMI+HAAFRKL+P++QP+R R
Sbjct: 182 AQCVAAVILICLNVQMALFCALGVSYTVMIMHAAFRKLTPARQPTRSR 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461516|ref|XP_002285129.1| PREDICTED: PRA1 family protein H-like [Vitis vinifera]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 143/234 (61%), Positives = 179/234 (76%), Gaps = 6/234 (2%)

Query: 1   MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS 60
           M   F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S
Sbjct: 1   MPMAFSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNS 59

Query: 61  -----LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR 115
                +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LR
Sbjct: 60  FFFVSILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLR 119

Query: 116 VHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIR 175
           VHENVKRYARNYA+LFI+ FAC+LYQMP+ALVGLISSLALWD  +FCSDKW  DRYPV+R
Sbjct: 120 VHENVKRYARNYATLFIICFACTLYQMPIALVGLISSLALWDLLRFCSDKWRVDRYPVVR 179

Query: 176 QVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
           Q L+   QCAT VVL   NVQ ALFCAL +SY VMILHA+FRKL+P+KQP+  R
Sbjct: 180 QALIHTVQCATAVVLFCSNVQFALFCALGVSYAVMILHASFRKLTPAKQPTPAR 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142972|emb|CBI20267.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 142/230 (61%), Positives = 178/230 (77%), Gaps = 6/230 (2%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS---- 60
           F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S    
Sbjct: 3   FSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNSFFFV 61

Query: 61  -LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHEN 119
            +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LRVHEN
Sbjct: 62  SILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLRVHEN 121

Query: 120 VKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLV 179
           VKRYARNYA+LFI+ FAC+LYQMP+ALVGLISSLALWD  +FCSDKW  DRYPV+RQ L+
Sbjct: 122 VKRYARNYATLFIICFACTLYQMPIALVGLISSLALWDLLRFCSDKWRVDRYPVVRQALI 181

Query: 180 RIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
              QCAT VVL   NVQ ALFCAL +SY VMILHA+FRKL+P+KQP+  R
Sbjct: 182 HTVQCATAVVLFCSNVQFALFCALGVSYAVMILHASFRKLTPAKQPTPAR 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456631|ref|XP_004146052.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449456633|ref|XP_004146053.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 140/230 (60%), Positives = 167/230 (72%), Gaps = 6/230 (2%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATT------TSANAVTTASTKETTTATTIT 58
           F+SNPLSL+VPD AF+SWLRDSGYLEILD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T+NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVL 178
           N KRYARNYASLF+LFF C+LYQMPLAL+GLIS LALWD  KFC D+W  D+YPV+ Q L
Sbjct: 123 NAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQCL 182

Query: 179 VRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRI 228
           VRIAQCAT+++L+  N QMA+FCAL I Y  MILHAAFRKL+P+K  S +
Sbjct: 183 VRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTV 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507067|ref|XP_004162924.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449507071|ref|XP_004162925.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 140/230 (60%), Positives = 167/230 (72%), Gaps = 6/230 (2%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATT------TSANAVTTASTKETTTATTIT 58
           F+SNPLSL+VPD AF+SWLRDSGYLEILD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T+NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVL 178
           N KRYARNYASLF+LFF C+LYQMPLAL+GLIS LALWD  KFC D+W  D+YPV+ Q L
Sbjct: 123 NAKRYARNYASLFVLFFVCTLYQMPLALLGLISCLALWDIVKFCCDRWGLDKYPVLWQCL 182

Query: 179 VRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRI 228
           VRIAQCAT+++L+  N QMA+FCAL I Y  MILHAAFRKL+P+K  S +
Sbjct: 183 VRIAQCATVIILLFSNFQMAIFCALGIGYTGMILHAAFRKLTPTKPTSTV 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417012|ref|NP_567776.1| PRA1-like protein H [Arabidopsis thaliana] gi|75155917|sp|Q8LFP1.1|PRA1H_ARATH RecName: Full=PRA1 family protein H; Short=AtPRA1.H gi|21536961|gb|AAM61302.1| unknown [Arabidopsis thaliana] gi|92856594|gb|ABE77405.1| At4g27540 [Arabidopsis thaliana] gi|332659955|gb|AEE85355.1| PRA1-like protein H [Arabidopsis thaliana]

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/239 (60%), Positives = 181/239 (75%), Gaps = 14/239 (5%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
             ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query: 171 YPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
           +P +R++ + I QCAT V+L  LNVQMALF ALAISY VMILHA FRKL+PSK+P+R R
Sbjct: 183 HPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSKKPTRGR 241

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799228|ref|XP_002867498.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata] gi|297313334|gb|EFH43757.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata]

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 143/239 (59%), Positives = 179/239 (74%), Gaps = 14/239 (5%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  TP WT  F G   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTPPWTTGFFGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
             ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL++SLALW+ FKFCSD+W +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLASLALWELFKFCSDRWKFDR 182

Query: 171 YPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
           +P +R+  + I QC T V+L  LNVQMALF ALAISY VMILHA FRKL+PSK+P R R
Sbjct: 183 HPSMRKFSIGIGQCVTAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSKKPPRGR 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499328|gb|AFK37730.1| unknown [Medicago truncatula]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 150/226 (66%), Positives = 185/226 (81%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLH 63
           VF+SNPL+L+VP+PAFESWLRD+GYLE++D  T+ +A+AV+T +   T++      SL  
Sbjct: 2   VFSSNPLALSVPEPAFESWLRDTGYLELIDQRTSAAADAVSTTTVNSTSSPLVPATSLSS 61

Query: 64  YLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRY 123
            L T +S LT+NPFAKLT DDFSA TPSW+R F+G+  SYSFPSSP   + RVHENVKRY
Sbjct: 62  KLLTLLSFLTLNPFAKLTADDFSADTPSWSRSFVGSSDSYSFPSSPSQARFRVHENVKRY 121

Query: 124 ARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQ 183
           ARNY+ LFI+FFA +LY+MPLALVGLIS LALWDFFKF SDKW  D+YPVIRQ L+RIAQ
Sbjct: 122 ARNYSYLFIVFFASALYKMPLALVGLISCLALWDFFKFSSDKWGLDQYPVIRQCLLRIAQ 181

Query: 184 CATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
           CAT V+L+  NVQMALFCA+++SY  +ILHAAFRKL+P+KQPS +R
Sbjct: 182 CATAVILIYSNVQMALFCAISVSYAGVILHAAFRKLTPAKQPSTVR 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2137692	241	PRA1.H "AT4G27540" [Arabidopsi	0.982	0.933	0.581	8e-69
TAIR|locus:2007948	180	PRA1.F1 "AT1G17700" [Arabidops	0.515	0.655	0.297	2.9e-07
TAIR|locus:2078371	209	PRA1.B1 "AT3G56110" [Arabidops	0.593	0.650	0.312	8e-06
TAIR|locus:2063120	213	PRA1.B2 "AT2G40380" [Arabidops	0.637	0.685	0.289	2.9e-05
TAIR|locus:2091541	188	PRA1.F4 "AT3G13710" [Arabidops	0.593	0.723	0.282	5.6e-05
TAIR|locus:2018359	182	MPI7 "CAMV movement protein in	0.598	0.752	0.221	0.00072
TAIR|locus:2020532	187	PRA1.G1 "AT1G55640" [Arabidops	0.563	0.689	0.291	0.00081

TAIR|locus:2137692 PRA1.H "AT4G27540" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 139/239 (58%), Positives = 165/239 (69%)

Query:     5 FASNPLSLNVPDPAFESWLRDSGYLEILDXXXXXXXXXXXXXXXXXXXXXXXXXHS---- 60
             F+ NPLSL+VPDPAFESWLRDSGYLE+LD                          S    
Sbjct:     3 FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query:    61 ----------LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
                       LL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct:    63 SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query:   111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
               ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct:   123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query:   171 YPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSPSKQPSRIR 229
             +P +R++ + I QCAT V+L  LNVQMALF ALAISY VMILHA FRKL+PSK+P+R R
Sbjct:   183 HPSMRKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFRKLTPSKKPTRGR 241

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2007948 PRA1.F1 "AT1G17700" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 36/121 (29%), Positives = 59/121 (48%)

Query:   100 LGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFF 159
             LGS++FP    T+  R+  N   +  NY  + +     SL   P +L+ L++ L  W F 
Sbjct:    45 LGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFL 104

Query:   160 KFCSDK--WNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFR 217
              F  D+    +DR    R VL+ I    TL +L L + ++ +  A+    + ++ HAA R
Sbjct:   105 YFLRDEPLTVFDREIDHRIVLI-IMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVR 163

Query:   218 K 218
             K
Sbjct:   164 K 164

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

TAIR|locus:2078371 PRA1.B1 "AT3G56110" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 8.0e-06, P = 8.0e-06
 Identities = 46/147 (31%), Positives = 74/147 (50%)

Query:    77 FAKLTT---DDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFIL 133
             F++L+T   D  S + P WT E I    S + P S      R+ +N+  +  NY ++  L
Sbjct:    30 FSRLSTSIRDGLSQRRP-WT-ELIDR-SSMARPESLTDALSRIRKNLAYFKVNYVAIVSL 86

Query:   134 FFACSLYQMPLALVGLISSLALWDF-FKFC-SDK--WNWDRYPVIRQVLVRIAQCATLVV 189
               A SL+  PL+L+ LI  L  W F + F  SD+    + R    R+ L+ +   +T+VV
Sbjct:    87 VLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALV-LSTIVV 145

Query:   190 LMLLNVQMALFCALAISYIVMILHAAF 216
             + + +V   L  AL I   ++ +H AF
Sbjct:   146 VFMTSVGSLLTSALMIGVAIVCVHGAF 172

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2063120 PRA1.B2 "AT2G40380" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 46/159 (28%), Positives = 76/159 (47%)

Query:    63 HYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKR 122
             H   TF+S L+ +       +  S + P W  E +    S++ P S      R+ +N+  
Sbjct:    26 HAFRTFLSRLSSS-----LRESLSQRRP-WL-ELVDR-SSFARPDSLTDSFSRIRKNLAY 77

Query:   123 YARNYASLFILFFACSLYQMPLALVGLISSLALWDF-FKF-CSDK--WNWDRYPVIRQVL 178
             +  NY+++  L  A SL   P +L+ L+S L  W F + F  SD+    + R    R+ L
Sbjct:    78 FKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETL 137

Query:   179 VRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFR 217
             + +    T+VV+ + +V   L  AL I   ++ LH AFR
Sbjct:   138 LGLV-LTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFR 175

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2091541 PRA1.F4 "AT3G13710" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 41/145 (28%), Positives = 65/145 (44%)

Query:    78 AKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLF--ILFF 135
             AK    D  A   SW   F   L S   P     +  R+  N+  +  NYA +   ++FF
Sbjct:    25 AKQRIKDGLATRRSWRVMF--DLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFF 82

Query:   136 ACSLYQMPLALVGLISSLALWDFFKFCSD-KWNWDRYPVI-RQVLVRIAQCATLVVLMLL 193
               SL   P +L+     + LW F  F  D      R+ +  R VL+ ++   T+V+L+L 
Sbjct:    83 --SLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLS-VITIVLLLLT 139

Query:   194 NVQMALFCALAISYIVMILHAAFRK 218
             N    +  AL    +++++HA  RK
Sbjct:   140 NATFNIVAALMAGAVLVLIHAVIRK 164

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2018359 MPI7 "CAMV movement protein interacting protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00072, P = 0.00072
 Identities = 31/140 (22%), Positives = 61/140 (43%)

Query:    79 KLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACS 138
             K T    +     W  +F+  L ++SFPSS      RV +N+  +  NY+ +  +    +
Sbjct:    10 KETAQSITGAARPWG-DFLD-LSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLT 67

Query:   139 LYQMPLALVGLISSLALWDFFKFCSDK-WNWDRYPVIRQVLVRIAQCATLVVLMLLNVQM 197
             L   P+A++  I+    W F  F  ++      + +   ++  +    ++  L+   V +
Sbjct:    68 LITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGVWL 127

Query:   198 ALFCALAISYIVMILHAAFR 217
                  +    +V+ILHAA R
Sbjct:   128 RALTTVGFGVLVLILHAALR 147

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046739 "spread of virus in multicellular host" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2020532 PRA1.G1 "AT1G55640" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00081, P = 0.00081
 Identities = 39/134 (29%), Positives = 60/134 (44%)

Query:    86 SAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLA 145
             S+  P W+ EF+ A GS   PSS      RV  N+  +A NY  L        L   P+A
Sbjct:    35 SSYRPWWS-EFL-AFGSIDRPSSFSPAVSRVKLNLHHFAVNYVLLTAASITLFLIGDPMA 92

Query:   146 LVGLISSLALWDFFKFCSDK--WNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCAL 203
             LV + S +A+W    F  D     + R+ +  +V+V      +L  L  +N    L   +
Sbjct:    93 LVTVASFVAMWLLLYFYRDHPLVLYGRH-ISDRVIVFGLILGSLWALWFINSLQCLILGV 151

Query:   204 AISYIVMILHAAFR 217
               S ++ ++HA  R
Sbjct:   152 VTSVLLCLVHAIIR 165


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.139   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      229       204   0.00094  111 3  11 22  0.37    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  184 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.31u 0.08s 16.39t   Elapsed:  00:00:08
  Total cpu time:  16.32u 0.08s 16.40t   Elapsed:  00:00:09
  Start:  Thu May  9 20:01:08 2013   End:  Thu May  9 20:01:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LFP1	PRA1H_ARATH	No assigned EC number	0.6025	0.9825	0.9336	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1070015 hypothetical protein (232 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam03208	153	pfam03208, PRA1, PRA1 family protein	3e-07

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 13/132 (9%)

Query: 94  REFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSL 153
            EF      +S P S      RV  N+  +  NYA + +     SL   PL+L+ L+  +
Sbjct: 13  SEFFD-RSRFSRPRSFSEATSRVRRNLLYFQTNYAIVVLAVLLLSLLTNPLSLIVLLVLV 71

Query: 154 ALWDFFKFCSDKWNWDRYPVI-------RQVLVRIAQCATLVVLMLLNVQMALFCALAIS 206
           A W F  F       +   V+       RQVL+ +    ++ +L L +    L   L   
Sbjct: 72  AAWLFLYF----LRPNEPLVLFGRTFSDRQVLIGLL-VVSVPLLFLTSAGSVLLWLLGAG 126

Query: 207 YIVMILHAAFRK 218
            ++++ HAAFR 
Sbjct: 127 LLLVLAHAAFRL 138

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	100.0
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	99.97
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	99.85
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	99.74

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-34  Score=241.24  Aligned_cols=136  Identities=26%  Similarity=0.412  Sum_probs=123.7

Q ss_pred             hhhhhcCCCCchhhhhhcCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 027028           82 TDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKF  161 (229)
Q Consensus        82 ~~dls~~rrpW~efFlgd~~~fs~P~s~~ea~~Rv~~NL~yF~~NY~li~l~~~~~~Li~~Pl~Li~l~~~~~~w~~l~~  161 (229)
                      ++.++++|| |+|||  |.++|++|+|++|+.+|+++|+.|||.||.+++.++.++++++||++|+++++++++|.++|+
T Consensus        31 ~~~lst~Rp-W~ef~--d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~LY~  107 (187)
T KOG3142|consen   31 QSGLSTRRP-WSEFF--DRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFLYF  107 (187)
T ss_pred             HHHHhccCC-HHHHH--cccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHheee
Confidence            455666665 99999  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccc-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 027028          162 CSDKW-NWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLS  220 (229)
Q Consensus       162 ~~d~~-~~~r~pi~~~~l~~~l~v~s~~lL~~t~~~~~l~~~l~~s~~vVllHAsfR~~~  220 (229)
                      .||+. ......+.++.++++++++|++++|+++++.+++|++++++++|+.||+||++|
T Consensus       108 ~rd~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~d  167 (187)
T KOG3142|consen  108 LRDEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNTD  167 (187)
T ss_pred             ecCCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhChH
Confidence            99762 222224557788999999999999999999999999999999999999999987

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=99.97  E-value=9.1e-30  Score=208.81  Aligned_cols=134  Identities=24%  Similarity=0.416  Sum_probs=118.7

Q ss_pred             hcCCCCchhhhhhcCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcc-
Q 027028           86 SAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSD-  164 (229)
Q Consensus        86 s~~rrpW~efFlgd~~~fs~P~s~~ea~~Rv~~NL~yF~~NY~li~l~~~~~~Li~~Pl~Li~l~~~~~~w~~l~~~~d-  164 (229)
                      ..++|||+|||  |.++|+.|+|.+|+.+|+++|+.|||+||+++++++++++++++|+.++++++++++|++++..++ 
T Consensus         5 ~~~~Rpw~eF~--~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~~   82 (153)
T PF03208_consen    5 LSPLRPWREFF--DTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRKE   82 (153)
T ss_pred             cCCCCCHHHHh--CccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            34566799999  999999999999999999999999999999999999999999999999999999999998887665 


Q ss_pred             --ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 027028          165 --KWNWDRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLSP  221 (229)
Q Consensus       165 --~~~~~r~pi~~~~l~~~l~v~s~~lL~~t~~~~~l~~~l~~s~~vVllHAsfR~~~~  221 (229)
                        +.......+.++.++.++.+++++++++++++.+++|+++++++++++||+||+++-
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~  141 (153)
T PF03208_consen   83 NDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDL  141 (153)
T ss_pred             CcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence              222233344566778889999999999999999999999999999999999999884

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.85  E-value=2.1e-20  Score=155.55  Aligned_cols=128  Identities=16%  Similarity=0.220  Sum_probs=103.0

Q ss_pred             CCCchhhhhhcCCCCCCCC--ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-H-HHHHHhcc
Q 027028           89 TPSWTREFIGALGSYSFPS--SPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLAL-W-DFFKFCSD  164 (229)
Q Consensus        89 rrpW~efFlgd~~~fs~P~--s~~ea~~Rv~~NL~yF~~NY~li~l~~~~~~Li~~Pl~Li~l~~~~~~-w-~~l~~~~d  164 (229)
                      .|.|.||++| ++||..|+  ++++|++|+.+|+.|||+||+++++..+.+..+.+|..+++.++..++ . ..++....
T Consensus        19 lRa~ddF~lg-S~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa~~~   97 (188)
T KOG4050|consen   19 LRALDDFLLG-SDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWAASA   97 (188)
T ss_pred             chhHHHhccC-cccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4679999994 99999998  899999999999999999999999999999999999998874444432 2 23332222


Q ss_pred             ccC--C--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 027028          165 KWN--W--DRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLS  220 (229)
Q Consensus       165 ~~~--~--~r~pi~~~~l~~~l~v~s~~lL~~t~~~~~l~~~l~~s~~vVllHAsfR~~~  220 (229)
                      +-.  .  .+||.   ..++++..+++++++..|+..++.+++..+++++++||++|-..
T Consensus        98 ~a~~krmr~~hp~---~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRn  154 (188)
T KOG4050|consen   98 DANIKRMRTDHPL---VTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRN  154 (188)
T ss_pred             cHHHHHHhhcCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            211  1  34554   35567888899999999999999999999999999999998654

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-17  Score=136.97  Aligned_cols=137  Identities=18%  Similarity=0.131  Sum_probs=113.6

Q ss_pred             chhhhhcCCCCchhhhhhcCCCCCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 027028           81 TTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFK  160 (229)
Q Consensus        81 ~~~dls~~rrpW~efFlgd~~~fs~P~s~~ea~~Rv~~NL~yF~~NY~li~l~~~~~~Li~~Pl~Li~l~~~~~~w~~l~  160 (229)
                      ..+-|...+. -+|||  |..|.++|.+++|+..|+-.|+.||..||..+...+.+|.+++||++|+++.+.+++.+.++
T Consensus        22 ~~q~L~~~~~-~~eFf--ni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~   98 (169)
T COG5130          22 IKQALGDKDV-TREFF--NIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIR   98 (169)
T ss_pred             HHHHhcCccc-HHHHh--ccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehh
Confidence            3344444443 48899  99999999999999999999999999999999999999999999999999888887766666


Q ss_pred             HhccccCC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 027028          161 FCSDKWNW-DRYPVIRQVLVRIAQCATLVVLMLLNVQMALFCALAISYIVMILHAAFRKLS  220 (229)
Q Consensus       161 ~~~d~~~~-~r~pi~~~~l~~~l~v~s~~lL~~t~~~~~l~~~l~~s~~vVllHAsfR~~~  220 (229)
                      ..+.+.-. +-....++.+|.+++++.+++-++.++..+++|..+++.++++.||++..+.
T Consensus        99 kl~g~~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p  159 (169)
T COG5130          99 KLRGRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEP  159 (169)
T ss_pred             hcccCccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCc
Confidence            55543111 1111226679999999999999999999999999999999999999987653

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00