Citrus Sinensis ID: 027039
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | ||||||
| 449453660 | 228 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.986 | 0.634 | 1e-81 | |
| 255553293 | 237 | conserved hypothetical protein [Ricinus | 0.973 | 0.940 | 0.609 | 2e-75 | |
| 297803418 | 231 | hypothetical protein ARALYDRAFT_492129 [ | 0.973 | 0.965 | 0.568 | 3e-71 | |
| 224124696 | 231 | predicted protein [Populus trichocarpa] | 0.960 | 0.952 | 0.603 | 4e-70 | |
| 124301140 | 231 | At2g16030 [Arabidopsis thaliana] | 0.973 | 0.965 | 0.551 | 8e-70 | |
| 15226670 | 231 | S-adenosyl-L-methionine-dependent methyl | 0.973 | 0.965 | 0.551 | 1e-69 | |
| 255563407 | 236 | conserved hypothetical protein [Ricinus | 0.973 | 0.944 | 0.609 | 2e-69 | |
| 225447419 | 231 | PREDICTED: uncharacterized protein LOC10 | 0.956 | 0.948 | 0.6 | 4e-67 | |
| 224145508 | 231 | predicted protein [Populus trichocarpa] | 0.960 | 0.952 | 0.603 | 4e-61 | |
| 296081234 | 211 | unnamed protein product [Vitis vinifera] | 0.868 | 0.943 | 0.604 | 5e-61 |
| >gi|449453660|ref|XP_004144574.1| PREDICTED: uncharacterized protein LOC101220368 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/227 (63%), Positives = 180/227 (79%), Gaps = 2/227 (0%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST--KFPKSSCDSSHRQH 58
MERH+ L K+S+ +I IAT TL++L LQTP+TCI NSP KFPKSSCDS+ R+
Sbjct: 1 MERHIRRFLNKLSFASIAIATLTLIILFLQTPQTCIPPNSPSKPHLKFPKSSCDSTPREL 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
+ ++KKN RLWSS WK++++S+ HFF+ +Q LL NH+KV+CVSAGAGHEVMA + +G
Sbjct: 61 VSIDKKNKRLWSSNDWKKKLSSFIHFFQSIQDLGLLHNHTKVICVSAGAGHEVMALSQMG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
V DVTGVEL+DS PLVSRADPHNLPFFD FD+AFTAHLAEALFPSRFV EMER V+ G
Sbjct: 121 VHDVTGVELIDSPPLVSRADPHNLPFFDHVFDLAFTAHLAEALFPSRFVSEMERAVRPDG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRRT 225
VC++++EEC E+K+IV LF SRFV++ NVT+ G MTRILM+RT
Sbjct: 181 VCVIVVEECGDYEVKEIVGLFMKSRFVNSINVTLTGLKMTRILMKRT 227
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553293|ref|XP_002517689.1| conserved hypothetical protein [Ricinus communis] gi|223543321|gb|EEF44853.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 139/228 (60%), Positives = 167/228 (73%), Gaps = 5/228 (2%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST---KFPKSSCDSS--H 55
ME H+E L KIS IT++T L+ L +TP TC+ N+P + KFP S+CD S H
Sbjct: 1 METHIENFLNKISILCITVSTIILLHLYFETPATCVAPNTPITKPHLKFPTSTCDPSLKH 60
Query: 56 RQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFN 115
R HLPL KKN RLWSS +W QV SY FF HLQ LL N+SKVLCVSAGAGHEVMA N
Sbjct: 61 RPHLPLSKKNQRLWSSNAWLSQVASYTTFFSHLQNLHLLHNNSKVLCVSAGAGHEVMALN 120
Query: 116 SIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVK 175
IGV D+TGVEL+DSLPLV +ADP+NLPFFD FD+ F+AHL EALFP RFVGEMERTV+
Sbjct: 121 KIGVVDITGVELVDSLPLVRKADPNNLPFFDGVFDLGFSAHLMEALFPVRFVGEMERTVR 180
Query: 176 IGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
GGVC+V++ +C + +IV LFR S+FV A NVT+ G MTRI++R
Sbjct: 181 NGGVCIVVVGQCDDNGVSEIVRLFRKSKFVGAKNVTLIGRKMTRIIVR 228
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803418|ref|XP_002869593.1| hypothetical protein ARALYDRAFT_492129 [Arabidopsis lyrata subsp. lyrata] gi|297315429|gb|EFH45852.1| hypothetical protein ARALYDRAFT_492129 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 128/225 (56%), Positives = 168/225 (74%), Gaps = 2/225 (0%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKS--TKFPKSSCDSSHRQH 58
MER+VE +L ++S I+I T +V+++LQTP+TCI +P T FP+S+CDSS RQH
Sbjct: 1 MERNVEKMLNRVSVVFISIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQH 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
LPL KKN R+WSSK+WK +++S++++F + L H+K LC+SAGAGH MA ++IG
Sbjct: 61 LPLPKKNARIWSSKAWKSRLSSFSNYFLRFRDLGFLQKHTKALCLSAGAGHAPMALSNIG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
+ADVT VEL+DS+PLV RADPHNLPFFD FD AFTAHLAEALFP RFV EMERTV+ GG
Sbjct: 121 LADVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWRFVEEMERTVRRGG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
C+V ++EC G +++ I LF S+ VD ANVT+ GS T IL +
Sbjct: 181 FCVVAVDECGGDDVRDIARLFHKSKVVDVANVTLEGSKRTSILFK 225
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124696|ref|XP_002319399.1| predicted protein [Populus trichocarpa] gi|222857775|gb|EEE95322.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 137/227 (60%), Positives = 166/227 (73%), Gaps = 7/227 (3%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST---KFPKSSCDSS-HR 56
ME+H+E L K+S ITIAT TL+ L L TPETCI N+P + KFP S+CD S +
Sbjct: 1 MEKHIENFLNKVSLVFITIATITLLYLYLHTPETCIPPNTPITKPHLKFPSSTCDPSLNH 60
Query: 57 QHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS 116
+ KK +LWSSKSW QV+S+ FF+ L LL N +KVLCVSAGAGHEVMA N+
Sbjct: 61 PYTDPTKKRLKLWSSKSWLSQVSSFTIFFQSLN---LLNNKTKVLCVSAGAGHEVMALNN 117
Query: 117 IGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKI 176
+GV+DVTGVE++DSLPLV RADP+NLPFFD FD+AF+AHL EALFP R VGEMERTV+
Sbjct: 118 MGVSDVTGVEIVDSLPLVKRADPNNLPFFDGVFDLAFSAHLEEALFPLRIVGEMERTVRN 177
Query: 177 GGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
GGVC+V ++EC G E+ I LFR S FV A NVT+ G MTRI+MR
Sbjct: 178 GGVCVVAVKECGGEEVDAIARLFRKSMFVGAENVTLIGMRMTRIIMR 224
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124301140|gb|ABN04822.1| At2g16030 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 124/225 (55%), Positives = 167/225 (74%), Gaps = 2/225 (0%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKS--TKFPKSSCDSSHRQH 58
MER+VE +L+++S ++I T +V+++LQTP+TCI +P T FP+S+CDSS RQH
Sbjct: 1 MERNVEKMLKRVSIVFLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQH 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
LPL KKN R+WSS +WK ++ S++ +F + + NH+K LC+SAGAGH +MA + IG
Sbjct: 61 LPLPKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFIQNHTKALCLSAGAGHALMALSQIG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
++DVT VEL+DS+PLV RADPHNLPFFD FD AFTAHLAEALFP +FV EMERTV+ GG
Sbjct: 121 LSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWQFVEEMERTVRRGG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
C+V ++EC G +++ I LF S+ VD ANVT+ GS T IL +
Sbjct: 181 FCVVSVDECGGDDVRDIARLFHNSKVVDVANVTLEGSKKTSILFK 225
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226670|ref|NP_179201.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|4678200|gb|AAD26946.1| hypothetical protein [Arabidopsis thaliana] gi|30793983|gb|AAP40441.1| unknown protein [Arabidopsis thaliana] gi|110739046|dbj|BAF01441.1| hypothetical protein [Arabidopsis thaliana] gi|330251366|gb|AEC06460.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 124/225 (55%), Positives = 167/225 (74%), Gaps = 2/225 (0%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKS--TKFPKSSCDSSHRQH 58
MER+VE +L+++S ++I T +V+++LQTP+TCI +P T FP+S+CDSS RQH
Sbjct: 1 MERNVEKMLKRVSIVFLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQH 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
LPL KKN R+WSS +WK ++ S++ +F + + NH+K LC+SAGAGH +MA + IG
Sbjct: 61 LPLPKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFIQNHTKALCLSAGAGHALMALSQIG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
++DVT VEL+DS+PLV RADPHNLPFFD FD AFTAHLAEALFP +FV EMERTV+ GG
Sbjct: 121 LSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWQFVEEMERTVRRGG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
C+V ++EC G +++ I LF S+ VD ANVT+ GS T IL +
Sbjct: 181 FCVVSVDECGGDDVRDIARLFHNSKVVDVANVTLEGSKKTSILFK 225
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563407|ref|XP_002522706.1| conserved hypothetical protein [Ricinus communis] gi|223538056|gb|EEF39668.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/228 (60%), Positives = 168/228 (73%), Gaps = 5/228 (2%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST---KFPKSSCDSS--H 55
ME+H+E L KIS ITI+T L+ L +TP TC+ N+P + KFP S+CD S H
Sbjct: 1 MEKHIENFLNKISILCITISTIILLHLYFETPATCVAPNTPITKPHLKFPTSTCDPSLKH 60
Query: 56 RQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFN 115
R LPL KKN RLWSS +W QV SY FF HLQ LL N+SKVLCVSAGAGHEVMA N
Sbjct: 61 RPLLPLSKKNQRLWSSNAWLSQVASYTTFFSHLQSLHLLHNNSKVLCVSAGAGHEVMALN 120
Query: 116 SIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVK 175
+GV DV GVEL+DSLPLV +ADP+NLPFFD FD+ F+AHL EALFP RFVGE+ERTV+
Sbjct: 121 KMGVFDVAGVELVDSLPLVRKADPNNLPFFDGVFDLGFSAHLMEALFPVRFVGEIERTVR 180
Query: 176 IGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
GGVC+V++ EC+ E+ +IV LFR S+FV A NVT+ G MTRI++R
Sbjct: 181 NGGVCVVVVGECSDNEVSKIVGLFRKSKFVGAENVTLIGMKMTRIIVR 228
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447419|ref|XP_002281700.1| PREDICTED: uncharacterized protein LOC100243023 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 138/230 (60%), Positives = 174/230 (75%), Gaps = 11/230 (4%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST-------KFPKSSCDS 53
MERHV+ LL K+S ITIAT + L+LQTP+TCI P +T +FPKSSCDS
Sbjct: 1 MERHVQTLLNKLSVVCITIATIIFLFLILQTPQTCI----PTTTHPRVRLLRFPKSSCDS 56
Query: 54 SHRQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMA 113
S R ++P KKN RLWS++ WK++V SYA FF+ L+ + LL NHSKVLCVSAGAGHEV A
Sbjct: 57 SRRDYVPFSKKNERLWSTRDWKKKVNSYAQFFRSLRDQRLLSNHSKVLCVSAGAGHEVAA 116
Query: 114 FNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERT 173
+ +G DVTGVEL++S PLVSRADPHNLPFF AFD+ F+AHL EALFP+RFV EMERT
Sbjct: 117 VSEVGARDVTGVELVESPPLVSRADPHNLPFFYGAFDLVFSAHLDEALFPARFVAEMERT 176
Query: 174 VKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
V++ GVC+V++EEC G E++ I+ +F+ S FV A NVT+ G MT+I+MR
Sbjct: 177 VRVRGVCVVVVEECGGDEMRGILRMFKHSVFVSAKNVTLIGLRMTQIIMR 226
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145508|ref|XP_002325668.1| predicted protein [Populus trichocarpa] gi|222862543|gb|EEF00050.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/227 (60%), Positives = 169/227 (74%), Gaps = 7/227 (3%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST---KFPKSSCDSS-HR 56
ME+H+E L K+S ITIAT TL+ L LQTP+TCI N+P + KFP S+CD S +
Sbjct: 1 MEKHIEKFLNKVSLVFITIATITLLYLSLQTPQTCIPPNTPTTKPHLKFPSSTCDPSLNH 60
Query: 57 QHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS 116
++ KK +LWSSKSW QV+S+ FF+ L +LL N +KVLCVSAGAGHEVMA N+
Sbjct: 61 PYMDPTKKRLKLWSSKSWLSQVSSFTTFFQSL---NLLNNETKVLCVSAGAGHEVMALNN 117
Query: 117 IGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKI 176
+GV+DVTGVE++DSLPLV RADP+NLPFFD F +AF+AHL EALFP RF GEMERTV+
Sbjct: 118 MGVSDVTGVEIVDSLPLVKRADPNNLPFFDGVFYLAFSAHLEEALFPLRFAGEMERTVRN 177
Query: 177 GGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
GGVC+V++EEC G E+ IV LFR S FV A NVT+ G MTRI+ R
Sbjct: 178 GGVCVVVVEECGGVEVDAIVGLFRKSMFVGAENVTLIGMRMTRIITR 224
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081234|emb|CBI17978.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/210 (60%), Positives = 160/210 (76%), Gaps = 11/210 (5%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKST-------KFPKSSCDS 53
MERHV+ LL K+S ITIAT + L+LQTP+TCI P +T +FPKSSCDS
Sbjct: 1 MERHVQTLLNKLSVVCITIATIIFLFLILQTPQTCI----PTTTHPRVRLLRFPKSSCDS 56
Query: 54 SHRQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMA 113
S R ++P KKN RLWS++ WK++V SYA FF+ L+ + LL NHSKVLCVSAGAGHEV A
Sbjct: 57 SRRDYVPFSKKNERLWSTRDWKKKVNSYAQFFRSLRDQRLLSNHSKVLCVSAGAGHEVAA 116
Query: 114 FNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERT 173
+ +G DVTGVEL++S PLVSRADPHNLPFF AFD+ F+AHL EALFP+RFV EMERT
Sbjct: 117 VSEVGARDVTGVELVESPPLVSRADPHNLPFFYGAFDLVFSAHLDEALFPARFVAEMERT 176
Query: 174 VKIGGVCMVLMEECAGREIKQIVELFRTSR 203
V++ GVC+V++EEC G E++ I+ +F+ SR
Sbjct: 177 VRVRGVCVVVVEECGGDEMRGILRMFKHSR 206
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | ||||||
| TAIR|locus:2052936 | 231 | AT2G16030 [Arabidopsis thalian | 0.973 | 0.965 | 0.551 | 1.5e-65 | |
| TAIR|locus:2116412 | 208 | AT4G26730 [Arabidopsis thalian | 0.724 | 0.798 | 0.548 | 6.8e-51 | |
| TAIR|locus:504955468 | 247 | AT4G24805 [Arabidopsis thalian | 0.733 | 0.680 | 0.355 | 1.2e-24 | |
| TAIR|locus:2023986 | 239 | AT1G24480 [Arabidopsis thalian | 0.895 | 0.857 | 0.304 | 5.3e-24 | |
| TAIR|locus:2149790 | 513 | AT5G01710 [Arabidopsis thalian | 0.877 | 0.391 | 0.272 | 5.3e-14 | |
| TAIR|locus:2143478 | 475 | CPUORF47 "conserved peptide up | 0.563 | 0.271 | 0.292 | 1.5e-06 | |
| TAIR|locus:2084021 | 466 | AT3G53400 "AT3G53400" [Arabido | 0.550 | 0.270 | 0.269 | 7.4e-06 |
| TAIR|locus:2052936 AT2G16030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 124/225 (55%), Positives = 167/225 (74%)
Query: 1 MERHVEALLRKISYGAITIATFTLVMLMLQTPETCILENSPKS--TKFPKSSCDSSHRQH 58
MER+VE +L+++S ++I T +V+++LQTP+TCI +P T FP+S+CDSS RQH
Sbjct: 1 MERNVEKMLKRVSIVFLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQH 60
Query: 59 LPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG 118
LPL KKN R+WSS +WK ++ S++ +F + + NH+K LC+SAGAGH +MA + IG
Sbjct: 61 LPLPKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFIQNHTKALCLSAGAGHALMALSQIG 120
Query: 119 VADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178
++DVT VEL+DS+PLV RADPHNLPFFD FD AFTAHLAEALFP +FV EMERTV+ GG
Sbjct: 121 LSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWQFVEEMERTVRRGG 180
Query: 179 VCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
C+V ++EC G +++ I LF S+ VD ANVT+ GS T IL +
Sbjct: 181 FCVVSVDECGGDDVRDIARLFHNSKVVDVANVTLEGSKKTSILFK 225
|
|
| TAIR|locus:2116412 AT4G26730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 91/166 (54%), Positives = 119/166 (71%)
Query: 58 HLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI 117
HLPL KKN R+W S +WK +++S++ +F + + NH+K LC+S GAGH MA + I
Sbjct: 25 HLPLPKKNARIWFSGAWKSRLSSFSTYFLRFRDLGFIQNHTKALCLSDGAGHAPMALSQI 84
Query: 118 GVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIG 177
G++DVT VEL+DS+PLV RADPHNLPFFD FD FTAHLAEALFP RFV EMERTV+ G
Sbjct: 85 GLSDVTAVELVDSIPLVKRADPHNLPFFDRVFDFVFTAHLAEALFPWRFVEEMERTVRRG 144
Query: 178 GVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMR 223
G C+V ++EC+G +++ I F S+ VD ANVT+ T IL +
Sbjct: 145 GFCVVAVDECSGDDVRDIARFFHNSKIVDVANVTLERVKRTSILFK 190
|
|
| TAIR|locus:504955468 AT4G24805 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 64/180 (35%), Positives = 100/180 (55%)
Query: 55 HRQHLPLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAF 114
H+ + K ++W+++ W ++V ++ FF+ L + LL N SK L + A G EV A
Sbjct: 67 HQLNKTQNPKLRKVWTTRDWDRKVRVFSTFFRRLSDRGLLSNQSKALSIGARVGQEVAAL 126
Query: 115 NSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174
IGV D G++L+ PLV + D H PF +E FD F+ AL+P +FVGE+ERT+
Sbjct: 127 RLIGVEDSVGIDLVPRPPLVVKGDFHAQPFDEETFDFEFSNVFDHALYPEKFVGEIERTL 186
Query: 175 KIGGVCMVLMEECAGR----------EIKQIVELFRTSRFVDAANVTVNGSNMTRILMRR 224
K GGVC VL +G+ +K +V+LF+ S+ V+ + G + T I+ R+
Sbjct: 187 KPGGVC-VLHVSISGKTDKYSANDLLSVKPLVKLFKRSKVVEMRKIDGFGLD-TEIVFRK 244
|
|
| TAIR|locus:2023986 AT1G24480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 67/220 (30%), Positives = 116/220 (52%)
Query: 17 ITIATFTLVMLMLQTPETCILENSPKSTKFPKSSCDSSHRQ-HLPLEKKNHRLWSSKSWK 75
+T+ + L+ PE ++ P T + RQ + L + +W ++ W
Sbjct: 17 LTLPLILFFSIQLRKPEKELIRIRPGYTSYDYYI----QRQLNKTLNPRLRTIWMTRDWD 72
Query: 76 QQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVS 135
+++ ++ FF+ L+ + LL SK LC+ A G EV A +GV D G++L+ PLV
Sbjct: 73 RKIKVFSRFFQDLKRQGLLSKDSKCLCLGARVGQEVEALKRVGVNDSVGMDLVPYPPLVV 132
Query: 136 RADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM------EECAG 189
+ D H+ PF DE FD F+ AL+P +FVGE+ERT++ GG+C++ + ++ +
Sbjct: 133 KGDFHHQPFDDETFDFEFSNVFDHALYPDKFVGEIERTLRPGGLCVLHVALSTRSDKYSA 192
Query: 190 RE---IKQIVELFRTSRFVDAANVTVNGSNMTRILMRRTR 226
+ ++ +V+LFR S V NV G + T ++ R+ R
Sbjct: 193 NDLFSVEALVKLFRQSEVVHVRNVDGFGLD-TEVVFRKKR 231
|
|
| TAIR|locus:2149790 AT5G01710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 58/213 (27%), Positives = 94/213 (44%)
Query: 8 LLRKISYGAITIAT-FTLVMLMLQTPETC-----ILENSPKSTKFPKSSC--DSSHRQHL 59
++R + +G + I F V+ + T E+C + P++ F S SS +
Sbjct: 15 MVRVLLFGVLIIVVRFAYVVTI--TGESCNRGDFCFFSLPENLNFVISGAASGSSAIDAI 72
Query: 60 PLEKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV 119
L++++ W + V Y+ F+ L L SK LCV G EV + IGV
Sbjct: 73 RSTSPGDDLYTTRDWIKSVQFYSSIFQDLIADGYLSPESKTLCVETAIGQEVHSLREIGV 132
Query: 120 ADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTA--HLAEALFPSRFVGEMERTVKIG 177
+ G+ S PLV R + H +PF D AFD F+ L ++L F E+ RT+K
Sbjct: 133 KNSVGISKKASRPLVVRGEGHAIPFEDNAFDFVFSGGDRLGKSLKQLEFADEITRTLKPE 192
Query: 178 GVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210
G +V + ++LF + R V ++
Sbjct: 193 GFAVVHVGATDTYSFNSFLDLFNSCRLVKMRDI 225
|
|
| TAIR|locus:2143478 CPUORF47 "conserved peptide upstream open reading frame 47" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 38/130 (29%), Positives = 55/130 (42%)
Query: 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHN 141
A L G LL +K+LC+ G+ V F +G + V GV SR +
Sbjct: 114 ADLVDELMGLKLLHYDAKILCIGQGSDSAVSGFKEMGFSVVQGVPKHPLFSFFSRKHVNE 173
Query: 142 LPFF-DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200
L D++FD + P+ V EMER +K GG VL+ A R +K + +
Sbjct: 174 LELSGDKSFDFVLCGDVDHVASPALLVLEMERVLKPGGTGAVLVSTNANRLVKSVTSGLK 233
Query: 201 TSRFVDAANV 210
S V N+
Sbjct: 234 QSEIVRVNNL 243
|
|
| TAIR|locus:2084021 AT3G53400 "AT3G53400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 34/126 (26%), Positives = 56/126 (44%)
Query: 71 SKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130
S K + + L G +LL N SK LC+ + V+A N G++DV+ +
Sbjct: 92 SDKCKDNIYLTTQVVRELTGMNLLSNDSKALCIGRRSVSAVLAMNRQGISDVSVAYMPPV 151
Query: 131 LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGR 190
R L + D +F F+ L P+ V E+ER +K GG +L+ +G
Sbjct: 152 FAFKHRKFTSELHYEDASFGFVFSMDLESVAVPASLVYEIERILKPGGTGAMLVGTTSGS 211
Query: 191 EIKQIV 196
+ ++V
Sbjct: 212 DSNELV 217
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.133 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 229 229 0.00082 113 3 11 22 0.48 32
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 608 (65 KB)
Total size of DFA: 183 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.92u 0.10s 21.02t Elapsed: 00:00:01
Total cpu time: 20.92u 0.10s 21.02t Elapsed: 00:00:01
Start: Thu May 9 20:30:38 2013 End: Thu May 9 20:30:39 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 229 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-08 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.001 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 0.003 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-08
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 101 LCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSR---------ADPHNLPFFDEAFDV 151
L V G G A G A VTGV+L + ++R D +LPF DE+FDV
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDV 60
Query: 152 AFTAHLAEALF-PSRFVGEMERTVKIGGVCMV 182
++ + L P R + E+ R +K GG ++
Sbjct: 61 VVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.001
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSR---------------ADPHNLP 143
+VL + G G +A S A VTGV++ ++R D LP
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 144 FF-DEAFDVAFTAHLAEALFPS--RFVGEMERTVKIGGV 179
DE+FDV + L RF+ E R +K GGV
Sbjct: 61 PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGV 99
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.003
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 136 RADPHNLPFFDEAFDVAFT----AHLAEALFPSRFVGEMERTVKIGGVCMVL 183
R D LPF D +FD + HL + P+R + E+ R ++ GG +VL
Sbjct: 75 RGDADGLPFPDGSFDAVRSDRVLQHLED---PARALAEIARVLRPGGRVVVL 123
|
Length = 241 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.79 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.74 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.72 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.7 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.69 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.68 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.67 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.66 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.65 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.64 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.64 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.63 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.6 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.59 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.59 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.58 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.58 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.57 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.56 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.56 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.55 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.53 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.53 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.53 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.53 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.53 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.52 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.51 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.51 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.51 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.51 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.51 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.5 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.49 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.49 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.49 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.48 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.48 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.47 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.46 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.45 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.43 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.43 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.42 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.41 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.41 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.4 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.39 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.38 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.38 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.37 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.37 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.36 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.36 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.36 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.36 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.36 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.35 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.35 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.34 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.34 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.34 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.34 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.34 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.33 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.33 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.32 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.32 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.32 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.32 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.32 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.31 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.31 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.31 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.31 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.3 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.3 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.29 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.28 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.28 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.28 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.27 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.27 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.26 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.25 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.23 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.22 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.22 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.21 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.21 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.2 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.2 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.18 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.16 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.16 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.15 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.15 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.15 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.14 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.14 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.14 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.12 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.12 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.11 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.1 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.1 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.08 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.07 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.07 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.07 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.07 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.03 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.02 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.02 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.02 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.0 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.99 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.98 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.97 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.96 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.94 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.94 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.94 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.93 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.93 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.92 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.92 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.91 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.9 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.9 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.89 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.86 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.85 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.82 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.81 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.8 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.78 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.78 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.77 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.77 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.76 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.75 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.75 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.74 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.74 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.74 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.73 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.72 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.72 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.71 | |
| PLN02366 | 308 | spermidine synthase | 98.68 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.65 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.64 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.63 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.63 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.61 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.6 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.6 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.58 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.57 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.54 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.49 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.49 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.48 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.48 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.45 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.43 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.43 | |
| PLN02476 | 278 | O-methyltransferase | 98.42 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.42 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.42 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.41 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.41 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.37 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.36 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.36 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.36 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.36 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.35 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.35 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.34 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.34 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.32 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.3 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.29 | |
| PLN02823 | 336 | spermine synthase | 98.28 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.28 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.28 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.27 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.26 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.21 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.16 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.16 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.15 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.14 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.14 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.14 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.13 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.12 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.11 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.06 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.04 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.03 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.02 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.02 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.01 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.0 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.98 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.93 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.87 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.85 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.84 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.82 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.81 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.81 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.8 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.79 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.76 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.73 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.73 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.73 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.69 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.66 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.6 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.59 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.53 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.52 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.49 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.43 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.43 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.39 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.35 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.32 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.27 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.24 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.24 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.21 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.21 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.2 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.17 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.03 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.03 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.91 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.88 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.83 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.78 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.78 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.67 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.57 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.52 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.5 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.41 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.12 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.01 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.95 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.94 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.65 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 95.64 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.56 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.52 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.5 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.44 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 95.04 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.03 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 95.01 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.93 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.88 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.75 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.69 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 94.61 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.5 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.5 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.26 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 94.25 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.07 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.02 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 93.95 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.89 | |
| PHA01634 | 156 | hypothetical protein | 93.82 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.77 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 93.74 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 93.35 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 93.25 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.21 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 93.18 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.99 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 92.69 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 92.64 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 92.52 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.46 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 92.42 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.35 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.26 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 91.99 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.92 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 91.66 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 91.31 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 90.96 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.85 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 90.63 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 89.65 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 89.41 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 89.32 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 89.31 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 89.03 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.75 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 88.64 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 88.47 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 88.06 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 87.62 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 87.53 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 86.44 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 86.18 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 85.96 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 85.91 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 85.4 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 85.29 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 84.59 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 84.31 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 83.81 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 83.81 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 83.3 | |
| PLN02494 | 477 | adenosylhomocysteinase | 83.28 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 82.64 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 82.61 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 82.54 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 82.15 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 82.0 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 81.78 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 81.49 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 81.33 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 81.09 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 80.64 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 80.45 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 80.28 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 80.01 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-19 Score=147.78 Aligned_cols=91 Identities=29% Similarity=0.403 Sum_probs=82.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
...+|.+|||||||||..+..+++. |.++|+|+|+|++| ++++++|++++||+|++||+|.+.+
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee
Confidence 3358999999999999999999998 77899999999883 4489999999999999999999998
Q ss_pred chhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..+.. ++.++|+|+.|+|||||++++.
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 88877 9999999999999999987754
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=137.44 Aligned_cols=131 Identities=19% Similarity=0.179 Sum_probs=105.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC------------------CeEEEcCCCCCCCCCCceeEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL------------------PLVSRADPHNLPFFDEAFDVA 152 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~------------------~~~~~~d~~~~~~~~~~fD~V 152 (229)
.++++.+|||+|||+|..+..+++. + .++|+|+|+|++| +.++++|++++|+++++||+|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 3467899999999999999999876 3 4699999999763 347889999999999999999
Q ss_pred Ecccchhhh-CHHHHHHHHHhccccCcEEEEEeecCC---------------------------------------cccH
Q 027039 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA---------------------------------------GREI 192 (229)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~---------------------------------------~~~~ 192 (229)
+++...++. ++.++++++.|+|||||++++..-... -.+.
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~ 229 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTG 229 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCH
Confidence 998877777 899999999999999999886532211 1255
Q ss_pred HHHHHHHhcCceeEeeeeeecCCeeEEEEEE
Q 027039 193 KQIVELFRTSRFVDAANVTVNGSNMTRILMR 223 (229)
Q Consensus 193 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (229)
+++.++++..+|..++.....+.....++.+
T Consensus 230 ~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 230 EELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 6777888899988887777666666666544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-17 Score=137.78 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+++.+|||+|||+|..+..+++. +.++|+|+|+|+.| ++++++|++++|+++++||+|++.+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 378899999999999999999886 45699999999873 4599999999999999999999988
Q ss_pred chhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..+.+ ++.++++|++|+|||||+++++
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 77777 8999999999999999998854
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=115.96 Aligned_cols=82 Identities=30% Similarity=0.495 Sum_probs=71.1
Q ss_pred EEEcCCCChhhHHHHhCCCCeEEEecCCCC------------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-CHHHHH
Q 027039 101 LCVSAGAGHEVMAFNSIGVADVTGVELMDS------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (229)
Q Consensus 101 LDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~l 167 (229)
||+|||+|..+..+++.+..+++++|+++. ...+.++|..++|+++++||+|+++.+.++. ++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 899999999999999995559999999987 2339999999999999999999999988888 889999
Q ss_pred HHHHhccccCcEEEE
Q 027039 168 GEMERTVKIGGVCMV 182 (229)
Q Consensus 168 ~~~~~~LkpgG~lil 182 (229)
+++.|+|||||++++
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999874
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-16 Score=123.29 Aligned_cols=127 Identities=23% Similarity=0.221 Sum_probs=98.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.++++.+|||+|||+|..+..++.. +..+|+++|+++. .+.++++|+.+.+. +++||+|+++.
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 3466899999999999999999875 5569999999976 25588999988776 77999999976
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh--cCceeEeeeeeecCCeeEEEEEEecc
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR--TSRFVDAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (229)
+. ++..+++++.+.|||||.+++..... ...++.++-. ...+.+...++.+|.+...++...+|
T Consensus 121 ~~---~~~~~l~~~~~~LkpGG~lv~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 121 VA---SLSDLVELCLPLLKPGGRFLALKGRD---PEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred cc---CHHHHHHHHHHhcCCCeEEEEEeCCC---hHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence 43 47889999999999999999776543 3334444433 77788888888888776666554443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-16 Score=130.04 Aligned_cols=116 Identities=10% Similarity=0.063 Sum_probs=90.3
Q ss_pred cCchhHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCC
Q 027039 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADP 139 (229)
Q Consensus 69 ~~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~ 139 (229)
|....|.+........+..+++.....++.+|||||||+|..+..+++. +..+|+|+|+|+.+ +.++++|+
T Consensus 2 w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~ 81 (255)
T PRK14103 2 WDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV 81 (255)
T ss_pred CCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh
Confidence 4444443333333333344444445578899999999999999999987 44599999999874 45889999
Q ss_pred CCCCCCCCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 140 HNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 140 ~~~~~~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.+++ ++++||+|+++.+.+++ ++.++++++.++|||||.+++.+.
T Consensus 82 ~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 82 RDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 8875 56899999999888888 899999999999999999987653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=124.43 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=102.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||+|||+|..+..+++. +.++++|+|+++.+ ++++.+|..+.++++++||+|+++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4578899999999999999999876 34699999998662 457889999888888999999998
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeecCCc----------------------------------------ccHHH
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAG----------------------------------------REIKQ 194 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~----------------------------------------~~~~~ 194 (229)
...++. ++.++++++.++|||||.+++....... .+..+
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 777666 8899999999999999998865432211 12356
Q ss_pred HHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 195 IVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
+.++++..+|..++-....+.....++.+|
T Consensus 202 l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 202 LAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 778888888887765555555556666543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=132.33 Aligned_cols=89 Identities=25% Similarity=0.383 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
+++.+|||||||+|..+..+++. +. +|+|+|+++. .+.++.+|+.++|+++++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 67889999999999999999987 55 9999999975 256889999999999999999999887
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+|. ++.++++++.++|||||++++..
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7777 89999999999999999998764
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-16 Score=119.63 Aligned_cols=93 Identities=28% Similarity=0.450 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC-----eEEEcCCCCCCCCCCceeEEEcccchhhh-CHHHHH
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----LVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFV 167 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~-----~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~l 167 (229)
..++.+|||||||.|.++..+++.|. +++|+|+++.++ .....+....+.++++||+|+++++.+|+ ++.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 47899999999999999999988888 999999998754 23333344555678999999999999999 899999
Q ss_pred HHHHhccccCcEEEEEeecC
Q 027039 168 GEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 168 ~~~~~~LkpgG~lil~~~~~ 187 (229)
+++.+.|||||.+++.+...
T Consensus 99 ~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 99 KELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHhcCCCCEEEEEEcCC
Confidence 99999999999999888764
|
... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=125.72 Aligned_cols=91 Identities=23% Similarity=0.270 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC----------eEEEcCCCCCCCCCCceeEEEcccchhhh-CH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP----------LVSRADPHNLPFFDEAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~----------~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~ 163 (229)
.++.+|||+|||+|..+..++..+. +++++|+++.++ .++.+|++++|+++++||+|+++...++. ++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 4678999999999999999988775 999999998743 47899999999989999999998766666 89
Q ss_pred HHHHHHHHhccccCcEEEEEeec
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..++.++.++|||||.+++.+..
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999999877533
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=131.97 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||||||+|.++..++..|. +|+|+|+++++ +.++++|++++++++++||+|++..+.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4677999999999999999998776 99999999752 447788888888888899999999999
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+|+ ++..+++++.++|||||.+++.+.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999 999999999999999999998753
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-16 Score=127.68 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------------EEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
-++.+|||||||.|.++..+|..|. .|+|+|+++.+++ +.+...+++....++||+|+|..+.+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 3899999999999999999999996 9999999998654 444444554444589999999999999
Q ss_pred h-CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 161 L-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 161 ~-~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
. +|..+++.+.+.+||||.+++.+-..
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 9 99999999999999999999887663
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=125.36 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||||||+|.++..++..|...|+|+|+|+. .+.++.+|++++|+ +++||+|+|..+.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 367899999999999999999987668999999874 24578889999988 7899999998888
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEeec---CC------------------cccHHHHHHHHhcCceeEeeeee
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEE---CA------------------GREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~~---~~------------------~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
+|. +|..+++++++.|||||.+++..-. .. ..+..++.+.+.+.+|..++.+.
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 787 8999999999999999999875311 10 01456778888888888776653
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=119.55 Aligned_cols=83 Identities=23% Similarity=0.273 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-------EEEcCCCCCCCCCCceeEEEcccchhhh-CHHHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRF 166 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-------~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~ 166 (229)
.++.+|||||||+|..+..+++....+|+|+|+|++|++ ++++|++++|+++++||+|+++...++. ++.++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~ 129 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKV 129 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHH
Confidence 457899999999999999999883249999999998644 6789999999999999999999877777 89999
Q ss_pred HHHHHhccccC
Q 027039 167 VGEMERTVKIG 177 (229)
Q Consensus 167 l~~~~~~Lkpg 177 (229)
++++.|+|||.
T Consensus 130 l~e~~RvLkp~ 140 (226)
T PRK05785 130 IAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHhcCc
Confidence 99999999994
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=113.78 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
++.+|||+|||+|..+..++.. +..+|+|+|+++. .+.++++|+.+++ .+++||+|+++.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRAL-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehhh--
Confidence 4889999999999999998876 4568999999985 2458889998874 3679999999762
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe--eeeeec
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA--ANVTVN 213 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~ 213 (229)
.+...+++.+.+.|||||.+++............+.+.+..+++.-+ ..++++
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 25677889999999999999877654444444455555444555433 345555
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=120.30 Aligned_cols=91 Identities=13% Similarity=0.244 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCC-CCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLP-FFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~-~~~~~fD~V~~~~~ 157 (229)
.++.+|||+|||+|..+..+++.+. +|+++|+++.+ +.++++|+.+++ +.+++||+|+++.+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4678999999999999999999976 99999999763 347788887763 56789999999988
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+++ +|.++++++.++|||||.+++....
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 8888 8999999999999999999876433
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=121.88 Aligned_cols=100 Identities=20% Similarity=0.175 Sum_probs=82.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEE
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~ 153 (229)
...++....+.++.+|||||||+|.++..+++. +..+|+|+|+++. .+.++.+|+.++. ++++||+|+
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIF 98 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEE
Confidence 333444445578899999999999999999987 5569999999976 3458888988765 456999999
Q ss_pred cccchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++...+++ ++.++++++.++|||||.+++.+.
T Consensus 99 ~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 99 ANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 99888877 889999999999999999887654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=122.95 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=93.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++.+|||||||+|.++..++..|...|+|+|+|+.+ +.+..+++.+++.. ++||+|+|+.+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 35688999999999999999988876689999998853 23566777777753 58999999988
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEeec--CC-------------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEE--CA-------------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~~~--~~-------------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.+|. +|..++++++++|||||.+++.+.. .+ ..+..++...+++.+|..++.+..
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 8888 9999999999999999999875321 10 114567778888889888876543
|
Known examples to date are restricted to the proteobacteria. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-14 Score=118.88 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=78.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++++.+|||||||+|..+..++.. +. +|+|+|+++. .+.++.+|+.+.|+++++||+|++...
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhh
Confidence 35688999999999999999999876 54 9999999975 255788999888998999999999765
Q ss_pred hhhh---CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~---~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
..|. ++..+++++.++|||||.+++.-
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5554 57889999999999999998653
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=111.97 Aligned_cols=91 Identities=20% Similarity=0.375 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCCChhhHHHH-hC-CCCeEEEecCCCC---------------CCeEEEcCCCCCC--CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFN-SI-GVADVTGVELMDS---------------LPLVSRADPHNLP--FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~-~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~ 155 (229)
+.+.+|||+|||+|..+..++ .. +..+++|+|+++. .+.++++|+.+++ ++ ++||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 568899999999999999999 44 4569999999987 2459999999977 55 899999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+.++. ++..+++++.+.||+||.+++....
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 877777 7889999999999999998866655
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=113.96 Aligned_cols=111 Identities=19% Similarity=0.247 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+.+ +.+..+|+.+.++ +++||+|+++.+.+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVLM 106 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEEecchh
Confidence 4678999999999999999999976 99999999863 4466778877776 46799999987766
Q ss_pred hhC---HHHHHHHHHhccccCcEEEEEeecC-----------CcccHHHHHHHHhcCceeEe
Q 027039 160 ALF---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 160 ~~~---~~~~l~~~~~~LkpgG~lil~~~~~-----------~~~~~~~l~~l~~~~~~~~~ 207 (229)
+.. ...+++++.++|||||.++++.... ...+..++.+.|..++.+..
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~ 168 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVKY 168 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhCCCeEEEe
Confidence 653 4789999999999999966543221 11245678888886655554
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=122.43 Aligned_cols=117 Identities=22% Similarity=0.226 Sum_probs=95.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC------------CeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL------------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
+++.+|||||||+|..+..+++. +..+++++|+++.+ ++++++|++++++++++||+|+++...++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 56789999999999999988876 55699999998763 458899999999989999999998877777
Q ss_pred -CHHHHHHHHHhccccCcEEEEEeecCC--------------cccHHHHHHHHhcCceeEeeeee
Q 027039 162 -FPSRFVGEMERTVKIGGVCMVLMEECA--------------GREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 162 -~~~~~l~~~~~~LkpgG~lil~~~~~~--------------~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
++..+++++.++|||||.+++...... ..+.+++.++++..+|..++..+
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 889999999999999999886543211 12457788889988888765443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=104.85 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCC-CCCCCCCCceeEEEccc-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADP-HNLPFFDEAFDVAFTAH- 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~-~~~~~~~~~fD~V~~~~- 156 (229)
|+.+|||||||+|..+..+++. +..+++|+|+++. .+.++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 6789999999999999999994 4559999999987 345899999 33333 45799999987
Q ss_pred chhhh----CHHHHHHHHHhccccCcEEEEEe
Q 027039 157 LAEAL----FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 157 ~~~~~----~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
..++. ...++++++.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33322 35789999999999999988653
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-14 Score=115.38 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=78.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CC------CeEEEecCCCCC------------------CeEEEcCCCCCCCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GV------ADVTGVELMDSL------------------PLVSRADPHNLPFFDE 147 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~------~~v~~vD~s~~~------------------~~~~~~d~~~~~~~~~ 147 (229)
...+++++||++||+|..+..+.+. +. .+|+..|+++.+ ..++.+|++++||+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 3467899999999999999998776 33 699999999873 3489999999999999
Q ss_pred ceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 148 AFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 148 ~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+||...+..-.... ++++.++|++|+|||||++. +...
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~-cLeF 215 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFS-CLEF 215 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEE-EEEc
Confidence 99999987544433 79999999999999999988 4443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.7e-14 Score=126.15 Aligned_cols=91 Identities=22% Similarity=0.220 Sum_probs=79.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++++.+|||||||+|..+..++.. +. +++|+|+|+. .+.++.+|..+.++++++||+|++..+
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 3577889999999999999999887 55 9999999965 245889999998888889999999987
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+|. ++..++++++++|||||.+++..
T Consensus 342 l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 342 ILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 7777 89999999999999999988764
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=110.38 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
-++.++||+|||.|..+..|+++|+ +|+++|.|+. .+.....|+.+..++ +.||+|++..+..+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 3678999999999999999999999 9999999986 345788898887774 68999998766666
Q ss_pred hCH---HHHHHHHHhccccCcEEEEEeec-CC----------cccHHHHHHHHhcCceeEeee
Q 027039 161 LFP---SRFVGEMERTVKIGGVCMVLMEE-CA----------GREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 161 ~~~---~~~l~~~~~~LkpgG~lil~~~~-~~----------~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+.+ .++++.+...++|||.+++++-. .. .....+|.+.|..+++++-.+
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E 169 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNE 169 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEc
Confidence 633 67899999999999998875422 11 113457899999999987554
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-14 Score=117.78 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=90.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||+|||+|..+..++.. + .++|+++|+++. .+.++.+|++++++++++||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 3578999999999999988877765 4 358999999876 2347889999999888999999998
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeec--------------------CCcccHHHHHHHHhcCceeEee
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE--------------------CAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~--------------------~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
.+.++. ++.++++++.++|||||++++.--. ....+..++.+++...+|..+.
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 777766 7889999999999999998874211 1123456677777777766654
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=110.95 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------------eEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.++.+|||+|||+|..+..+++.|. +|+|+|+++.++ .+...|....++ +++||+|+++.+.++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEeccccc
Confidence 4567999999999999999999876 999999998633 355567666565 368999999877666
Q ss_pred hC---HHHHHHHHHhccccCcEEEEEeecC-----------CcccHHHHHHHHhcCceeEee
Q 027039 161 LF---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 161 ~~---~~~~l~~~~~~LkpgG~lil~~~~~-----------~~~~~~~l~~l~~~~~~~~~~ 208 (229)
.+ ...+++++.+.|||||+++++.... ...+..++.+.|.....+...
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~~~~~~~~ 168 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYADWELLKYN 168 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCCCeEEEee
Confidence 53 3689999999999999966553211 123567788888876665555
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=111.74 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-----------CeEEEcCCCCCCCCCCceeEEEcccchhhh-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-----------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~- 161 (229)
..+.+|||+|||+|.++..+++. +..+++++|+++.+ +.++.+|+.+.++++++||+|+++++.++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 34578999999999999999988 45579999999763 468899999999888999999999888888
Q ss_pred CHHHHHHHHHhccccCcEEEEEeec
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++.+++.++.++|||||.+++....
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 8999999999999999998876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=111.19 Aligned_cols=93 Identities=26% Similarity=0.395 Sum_probs=80.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..+.++.+|||+|||+|.++..++.. +.++++|+|+++. .+.++.+|+.+.++++++||+|++.
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEe
Confidence 35578899999999999999999886 3569999999975 2458888988888888999999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEe
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+.++. ++..+++++.+.|||||.+++..
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 888887 89999999999999999988664
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=115.76 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------Ce--EEEcCCCCCCCCCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PL--VSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~--~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.|.+|||||||+|+++..++..|...|+|+|++... .. .....++++|. .++||+|+|-.+..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 688999999999999999999988899999998761 11 22235667776 78999999998888
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEeecCC---------------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLMEECA---------------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~~~~---------------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
|. +|...+.+++..|+|||.+++-+-.-+ --+...+..-.++++|..++.+..
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 88 999999999999999999987654311 116778888899999999988754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-13 Score=109.14 Aligned_cols=131 Identities=19% Similarity=0.263 Sum_probs=102.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..++.+|||+|||+|..+..++... ..+++++|+++. .+.++.+|+.+.++++++||+|+++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 3567899999999999999998873 469999999864 2457888988888778899999998
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeecCCc----------------------------------------ccHHH
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAG----------------------------------------REIKQ 194 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~----------------------------------------~~~~~ 194 (229)
+..++. ++..+++++.+.|+|||.+++....... .+..+
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 777777 8899999999999999998765321111 12355
Q ss_pred HHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 195 IVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
+.+++...+|..++.....+.-..+++.++
T Consensus 209 ~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 209 LAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 778888999988777665555557777665
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-14 Score=118.71 Aligned_cols=87 Identities=22% Similarity=0.330 Sum_probs=73.1
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe---------------------EEEcCCCCCCCCCCceeEEEcc
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------VSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~---------------------~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
|++|||+|||+|.++..|+..|. +|+|+|+++.+++ +...+++.. .+.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 47899999999999999999986 9999999988443 333333333 2469999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
.+.+|. +|++++..+.+.|||||.+++.+-..
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 999999 99999999999999999999876553
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=109.55 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=78.3
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----CCeEEEcCCCCCC--------CCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~~ 157 (229)
..++++.+|||+|||+|.++..+++. + .+.|+|+|+++. .+.++++|+.+.+ +.+++||+|+++..
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 34588999999999999999999887 3 359999999863 4678999998853 66789999999632
Q ss_pred hhhh-C-----------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHH
Q 027039 158 AEAL-F-----------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (229)
Q Consensus 158 ~~~~-~-----------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l 198 (229)
.... . ...+++++.++|||||.+++.+-. .....++.+.
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~--~~~~~~~l~~ 177 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ--GEGFDEYLRE 177 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec--CcCHHHHHHH
Confidence 2111 1 146889999999999998875543 3344444433
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.6e-13 Score=107.37 Aligned_cols=129 Identities=22% Similarity=0.266 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CC-CeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~-~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||+|||+|..+..+++. +. .+++++|+++. .+.++.+|+.+.++++++||+|+++...+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 47889999999999999999887 32 58999999865 25688899998888788999999987777
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEeecCCc----------------------------------------ccHHHHHHH
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLMEECAG----------------------------------------REIKQIVEL 198 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~----------------------------------------~~~~~l~~l 198 (229)
+. ++..+++++.+.|+|||++++....... .+..++..+
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAM 197 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHH
Confidence 66 8899999999999999998865432111 023446667
Q ss_pred HhcCceeEeeeeeecCCeeEEEEEE
Q 027039 199 FRTSRFVDAANVTVNGSNMTRILMR 223 (229)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (229)
+...+|..+..-+..+.-...++.+
T Consensus 198 l~~aGf~~~~~~~~~~~~~~~~~~~ 222 (223)
T TIGR01934 198 LKEAGFEEVRYRSLTFGVAAIHVGK 222 (223)
T ss_pred HHHcCCccceeeeeecceeeEEEec
Confidence 7777777766666655544555543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=109.77 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------------e-EEEcCCCCCC-CCCCceeEEEcccchh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------L-VSRADPHNLP-FFDEAFDVAFTAHLAE 159 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------------~-~~~~d~~~~~-~~~~~fD~V~~~~~~~ 159 (229)
...||+||||+|..-..+-..+..+||++|+++.|- + |+.++.+++| ++|+++|.|++..+..
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 345799999999987776666556999999998832 2 8899999998 8899999999986555
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEeecCCccc
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLMEECAGRE 191 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~ 191 (229)
.. +|.+.++++.|+|||||+++++-...+.|.
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~ 189 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYG 189 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEecccccch
Confidence 55 999999999999999999987766655553
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-13 Score=108.53 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------------------CeEEEcCCCCCCCC-C
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------------------PLVSRADPHNLPFF-D 146 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------------------~~~~~~d~~~~~~~-~ 146 (229)
.++.+|||+|||.|..+..|+++|+ +|+|+|+|+.. +.+.++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5778999999999999999999998 99999999772 34578888876642 3
Q ss_pred CceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeecC------C---cccHHHHHHHHh-cCceeEeeeee
Q 027039 147 EAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEEC------A---GREIKQIVELFR-TSRFVDAANVT 211 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~------~---~~~~~~l~~l~~-~~~~~~~~~~~ 211 (229)
++||.|+...+..|+.+ ...++.+.++|||||.+++.+-.. + ..+..++.++|. .+++..+....
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~~ 189 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESRD 189 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeecc
Confidence 57999998766666644 568999999999999755553321 1 245678889997 45776666544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=114.73 Aligned_cols=112 Identities=15% Similarity=0.228 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
++.+|||+|||+|..+..+++.|. +|+|+|+|+.+ +.+...|+...++ +++||+|+++.+.+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 445999999999999999999986 99999999873 3366677776655 6799999999877766
Q ss_pred C---HHHHHHHHHhccccCcEEEEEeecC-----------CcccHHHHHHHHhcCceeEeee
Q 027039 162 F---PSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 162 ~---~~~~l~~~~~~LkpgG~lil~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+ ...+++++.+.|||||.++++.... ...+..++.+.|..++++...+
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~~~e 259 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVKYNE 259 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEEEec
Confidence 4 4678999999999999976553211 1235678999999988877754
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-14 Score=100.79 Aligned_cols=80 Identities=25% Similarity=0.254 Sum_probs=53.2
Q ss_pred EEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe---------------EEEcCCCCCC--CCCCceeEEEcccchhhh-
Q 027039 101 LCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLP--FFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 101 LDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------------~~~~d~~~~~--~~~~~fD~V~~~~~~~~~- 161 (229)
||||||+|..+..+.+. +..+++|+|+|+.+++ ....+..+.. ...++||+|++..+.+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999888 6679999999999773 2222222221 112599999999999999
Q ss_pred CHHHHHHHHHhccccCcEE
Q 027039 162 FPSRFVGEMERTVKIGGVC 180 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~l 180 (229)
++.++++++.+.|||||.+
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 8899999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=107.10 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------------------CeEEEcCCCCCCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------------------PLVSRADPHNLPFFD 146 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------------------~~~~~~d~~~~~~~~ 146 (229)
..++.+|||+|||.|..+..|+++|+ +|+|+|+|+.. +.+.++|+.+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 35678999999999999999999998 99999999762 335678888875332
Q ss_pred -CceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeecCC---------cccHHHHHHHHhc-CceeEeeeeee
Q 027039 147 -EAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFRT-SRFVDAANVTV 212 (229)
Q Consensus 147 -~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~---------~~~~~~l~~l~~~-~~~~~~~~~~~ 212 (229)
+.||+|+...+..++.+ .+.++.+.++|||||.+++++.... ..+..++.++|.. .++..++....
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~~~ 193 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQDV 193 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeeccc
Confidence 68999998777677744 6789999999999997554332211 2367788999986 68877777665
Q ss_pred cCC
Q 027039 213 NGS 215 (229)
Q Consensus 213 ~~~ 215 (229)
.+.
T Consensus 194 ~~~ 196 (218)
T PRK13255 194 LED 196 (218)
T ss_pred ccc
Confidence 553
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-13 Score=105.41 Aligned_cols=119 Identities=25% Similarity=0.294 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------CCeEEEcCCCC-C-CCCCCceeEEEcccchhhh-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------LPLVSRADPHN-L-PFFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------~~~~~~~d~~~-~-~~~~~~fD~V~~~~~~~~~- 161 (229)
++++++|||+|||.|.+...|.+. ++ +..|+|++++ .+.++++|+++ + .|+|++||.|+++....+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 489999999999999999999886 55 9999999987 56699999987 4 4899999999999888888
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCC-------------------------------cccHHHHHHHHhcCceeEeeee
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECA-------------------------------GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~-------------------------------~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+|.++++|+.|+ |...++.++..+ -.+++.+.++.+..++.-.+.+
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~ 166 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERV 166 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEE
Confidence 899999999766 557666766532 1156777788887777777776
Q ss_pred eecCCe
Q 027039 211 TVNGSN 216 (229)
Q Consensus 211 ~~~~~~ 216 (229)
...+..
T Consensus 167 ~~~~~~ 172 (193)
T PF07021_consen 167 FLDGGR 172 (193)
T ss_pred EEcCCC
Confidence 655544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-13 Score=114.61 Aligned_cols=102 Identities=24% Similarity=0.244 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCC
Q 027039 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLP 143 (229)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~ 143 (229)
....+..+.+...+++|.+|||||||.|.++..+++. |+ +|+|+.+|+. .+.+...|..+++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 3455566677778899999999999999999999999 87 9999999976 3457778887765
Q ss_pred CCCCceeEEEcccchhhh---CHHHHHHHHHhccccCcEEEEEeec
Q 027039 144 FFDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+||.|++..+.+|+ +...+++++.+.|||||++++..-.
T Consensus 126 ---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 126 ---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred ---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 399999999888887 4589999999999999999876433
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=107.19 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=87.6
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.+|||||||+|..+..+++. +..+++|+|+++.+ +.++.+|..+.+++ ++||+|++..+.+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 37999999999999999887 44599999998752 35788888766664 58999999988888
Q ss_pred h-CHHHHHHHHHhccccCcEEEEEeecCC-------------cccHHHHHHHHhcCceeEeeee
Q 027039 161 L-FPSRFVGEMERTVKIGGVCMVLMEECA-------------GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 161 ~-~~~~~l~~~~~~LkpgG~lil~~~~~~-------------~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
. ++..+++++.++|||||.+++...... ..+..++.+++...+|..+...
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 8 889999999999999999887643211 1135667778887777766544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=105.98 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=69.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------CeEEEcCCCCCCCCCCceeEEEcccchhhhC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEALF 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~ 162 (229)
+.++.+|||+|||+|..+..+++. +..+++|+|+|+.+ +.+.++|+.+ |+++++||+|+++.+.+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 367889999999999999999887 55699999999873 4578889888 88899999999999888886
Q ss_pred H---HHHHHHHHhccccCcEEE
Q 027039 163 P---SRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 163 ~---~~~l~~~~~~LkpgG~li 181 (229)
| .++++++.+++ ++.++
T Consensus 120 p~~~~~~l~el~r~~--~~~v~ 139 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYIL 139 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEE
Confidence 5 56777777776 34444
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=110.83 Aligned_cols=96 Identities=21% Similarity=0.320 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C---CCeEEEecCCCCC----------CeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G---VADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g---~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.++.+|||+|||+|.++..+++. + ...++|+|+|+.+ +.+.++|+.++|+++++||+|++...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 45678999999999999998865 2 2379999999763 45889999999999999999998542
Q ss_pred hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHH
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l 198 (229)
...++++.|+|||||.++++... .....++.+.
T Consensus 161 ---~~~~~e~~rvLkpgG~li~~~p~--~~~l~el~~~ 193 (272)
T PRK11088 161 ---PCKAEELARVVKPGGIVITVTPG--PRHLFELKGL 193 (272)
T ss_pred ---CCCHHHHHhhccCCCEEEEEeCC--CcchHHHHHH
Confidence 23468899999999999987665 3333444443
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=101.46 Aligned_cols=109 Identities=24% Similarity=0.315 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccch-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLA- 158 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~~- 158 (229)
++.+|||+|||+|..+..++.. +..+|+++|+++.+ +.++..|..+.. ++++||+|++|--.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-PDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-CTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-cccceeEEEEccchh
Confidence 7889999999999999999998 44479999999871 457788876632 37899999998211
Q ss_pred --h--hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeE
Q 027039 159 --E--AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD 206 (229)
Q Consensus 159 --~--~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~ 206 (229)
. .. ...+++++..+.|||||.++++......+. ..+.++|+..+.+.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~-~~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYE-RLLKELFGDVEVVA 161 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHH-HHHHHHHS--EEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChH-HHHHHhcCCEEEEE
Confidence 1 11 347889999999999999998887655443 33788888665544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.5e-13 Score=108.66 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCC-CCCC--CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADP-HNLP--FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~-~~~~--~~~~~fD~V~~~ 155 (229)
+++.+|||+|||+|..+..+++. +..+++|+|+++. .+.++++|+ +.++ +++++||.|+++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 46789999999999999999887 5569999999986 345888998 6666 678899999986
Q ss_pred cchhh------h---CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 156 HLAEA------L---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 156 ~~~~~------~---~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
..... . ....+++++.++|||||.+++.+.. ..-...+.+.+...++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~--~~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW--EGYAEYMLEVLSAEGGF 175 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC--HHHHHHHHHHHHhCccc
Confidence 42211 1 1367899999999999998877654 44455677777766653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=108.96 Aligned_cols=89 Identities=9% Similarity=0.139 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcCCCChhhHHHHh--C-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNS--I-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~--~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
+.++.+|||||||+|..+..+++ . +..+++|+|+|+.+ +.++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 46889999999999999988876 2 45699999999863 45788898888764 5899999
Q ss_pred ccchhhhCH---HHHHHHHHhccccCcEEEEEe
Q 027039 155 AHLAEALFP---SRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 155 ~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~ 184 (229)
+...+++.+ ..+++++.+.|||||.+++.-
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 877777643 679999999999999988653
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=108.17 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=81.2
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDE 147 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~ 147 (229)
++.+.....+++|++|||||||.|..++.+++. +. +|+|+++|++ .+++...|..+. ++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e 136 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EE 136 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---cc
Confidence 344455568899999999999999999999999 76 9999999987 244555565554 45
Q ss_pred ceeEEEcccchhhh-C--HHHHHHHHHhccccCcEEEEEeec
Q 027039 148 AFDVAFTAHLAEAL-F--PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 148 ~fD~V~~~~~~~~~-~--~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+||-|+|..+.+|+ . ...++..+.+.|+|||.+++++-.
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence 69999999988988 3 689999999999999999887654
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-12 Score=99.45 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=81.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+.++.+|||+|||+|..+..++.. +..+++++|+++.+ +.++.+|... ++ +++||+|++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~ 105 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECC
Confidence 3467889999999999999999887 55699999999872 3366666532 33 46899999865
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEee
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
... ....+++++.+.|||||.+++.... ..+..++.+.+++.++..++
T Consensus 106 ~~~--~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 106 SGG--NLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred Ccc--CHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence 322 3567889999999999998765432 34556777888877765444
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=104.77 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=85.7
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe----------EEEcCCCCCCCCCCceeEEEcc
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------VSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+++.-.+.+..+|.|+|||+|..+..|+++ |...++|+|.|++|+. |.++|+.++. ++..+|++++|
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaN 99 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFAN 99 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhh
Confidence 3444456678899999999999999999998 8789999999998654 8899999976 46789999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+.+.+ +-.+++.++...|.|||.+.+.++.
T Consensus 100 AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 100 AVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 888888 8889999999999999998877765
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.7e-12 Score=100.10 Aligned_cols=114 Identities=20% Similarity=0.215 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~L 174 (229)
.++..|.|+|||.+.++..+.. +. .|...|+......++.+|+.+.|+++++.|+++..-.+...+...++.|+.|+|
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvL 148 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVL 148 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHE
T ss_pred CCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHhee
Confidence 4567999999999999977643 34 899999999988999999999999999999999865455557899999999999
Q ss_pred ccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 175 KIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 175 kpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
||||.+.+.=-...-.+.+.+.+...+.+|.....-
T Consensus 149 K~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 149 KPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp EEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 999998876555556678889999999999888753
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.2e-12 Score=97.15 Aligned_cols=127 Identities=20% Similarity=0.345 Sum_probs=99.0
Q ss_pred CCCC-eEEEEcCCCChhhHHHHhCCCCe-EEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 95 FNHS-KVLCVSAGAGHEVMAFNSIGVAD-VTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~-~vLDiG~G~G~~~~~l~~~g~~~-v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.... +|||+|||.|.+...|++.|+.. .+|+|+|++ .+.|.+.|+.+..+..++||+|+--.
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecC
Confidence 3444 99999999999999999997654 999999987 25699999998778889999998652
Q ss_pred chhhh--C-------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeec--------CCeeEE
Q 027039 157 LAEAL--F-------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVN--------GSNMTR 219 (229)
Q Consensus 157 ~~~~~--~-------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--------~~~~~~ 219 (229)
....+ . +.-.+..+.+.|+|||+++ ++++ +....++.+.|.+.+|+....|..+ |+....
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv-ItSC--N~T~dELv~~f~~~~f~~~~tvp~ptF~FgG~~G~tvt~ 221 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV-ITSC--NFTKDELVEEFENFNFEYLSTVPTPTFMFGGSVGSTVTS 221 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEE-EEec--CccHHHHHHHHhcCCeEEEEeeccceEEeccccccEEEE
Confidence 22221 1 2345678889999999988 5665 6788999999999999888887654 566666
Q ss_pred EEEEe
Q 027039 220 ILMRR 224 (229)
Q Consensus 220 ~~~~~ 224 (229)
+.|++
T Consensus 222 vaF~~ 226 (227)
T KOG1271|consen 222 VAFLR 226 (227)
T ss_pred EEEec
Confidence 66654
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-12 Score=93.10 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=69.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCC-CCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHN-LPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~-~~~~~~~fD~V~~~ 155 (229)
.+.++.+|||+|||+|..+..+++. +..+++++|+++.+ +.++.+|+.. .+...++||.|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 4467789999999999999999987 55699999998762 3466677654 33334689999986
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.... ...++++++.+.|||||.+++.+
T Consensus 96 ~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGG--LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccch--hHHHHHHHHHHHcCCCCEEEEEe
Confidence 4222 24689999999999999988765
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.1e-13 Score=95.82 Aligned_cols=79 Identities=27% Similarity=0.452 Sum_probs=63.7
Q ss_pred EEEEcCCCChhhHHHHhC---C-CCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc-cchhh
Q 027039 100 VLCVSAGAGHEVMAFNSI---G-VADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA-HLAEA 160 (229)
Q Consensus 100 vLDiG~G~G~~~~~l~~~---g-~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~-~~~~~ 160 (229)
|||+|||+|..+..+.+. + ..+++|+|+++. .++++++|+.++++.+++||+|++. .+.+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999876 2 259999999987 3459999999999888999999995 44666
Q ss_pred hCH---HHHHHHHHhccccCc
Q 027039 161 LFP---SRFVGEMERTVKIGG 178 (229)
Q Consensus 161 ~~~---~~~l~~~~~~LkpgG 178 (229)
+.+ .++++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 743 778999999999998
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=97.60 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=79.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----CCeEEEcCCCCCC--------CCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~~ 157 (229)
..++++.+|||+|||+|.++..++.. +.++++++|+++. .+.++++|+.+.+ +++++||+|+++..
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 45688999999999999999988876 4458999999985 4567788887643 45678999998531
Q ss_pred h--------hhh----CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc
Q 027039 158 A--------EAL----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (229)
Q Consensus 158 ~--------~~~----~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~ 201 (229)
. .+. ...+++.++.+.|+|||++++.... .+...++.+.+++
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~--~~~~~~~l~~l~~ 161 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ--GEEIDEYLNELRK 161 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc--CccHHHHHHHHHh
Confidence 1 111 1367899999999999998875533 4455555555443
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=118.86 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCC--CCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLP--FFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~--~~~~~fD~V~~~~~ 157 (229)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.+ +.++++|..++| +++++||+|+++.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 46889999999999999998876 56699999999863 246788988877 78899999999866
Q ss_pred hhhh--------------CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL--------------FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~--------------~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.++. ++.++++++.++|||||.+++.-
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5542 35789999999999999998753
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-12 Score=103.04 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=80.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEccc--
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAH-- 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~-- 156 (229)
.+.++.+|||+|||+|.++..++..+..+++++|+++.+ +.++.+|+.+. +++++||+|+++-
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy 111 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPY 111 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCC
Confidence 357789999999999999999988776699999999862 34677777653 4567999999972
Q ss_pred chhhh--------------------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 157 LAEAL--------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 157 ~~~~~--------------------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
..... ....+++++.+.|||||+++++.... ....++.+.++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--~~~~~~~~~l~~~g~ 177 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--SGVERTLTRLSEAGL 177 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--cCHHHHHHHHHHCCC
Confidence 11100 13567889999999999988776653 234556666665444
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=100.51 Aligned_cols=120 Identities=20% Similarity=0.166 Sum_probs=85.4
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCCC----CCCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNL----PFFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~~----~~~~~~fD~V~ 153 (229)
..++++.+|||+|||+|.++..+++. +.+.|+|+|+++. .+.++.+|+.+. ++ .++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 35679999999999999999999987 5569999999984 345778887652 22 35699999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCC-----c--ccHHHHHHHHhcCceeEeeeeeec
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA-----G--REIKQIVELFRTSRFVDAANVTVN 213 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~-----~--~~~~~l~~l~~~~~~~~~~~~~~~ 213 (229)
+.. ........+++++.++|||||.+++.+.... . ...++..+.++..+|..++.++..
T Consensus 147 ~d~-~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 147 QDV-AQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred ECC-CChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 632 1100123468999999999999998644211 1 112234577888888888777654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-12 Score=106.68 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=76.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChh----hHHHHhC-C-----CCeEEEecCCCCC---------------------
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHE----VMAFNSI-G-----VADVTGVELMDSL--------------------- 131 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~----~~~l~~~-g-----~~~v~~vD~s~~~--------------------- 131 (229)
.+++.+.......++.+|||+|||+|.. +..+++. + ..+|+|+|+|+.+
T Consensus 86 ~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~ 165 (264)
T smart00138 86 KVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKAL 165 (264)
T ss_pred HHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHH
Confidence 3344443333334568999999999974 4444443 2 2489999999862
Q ss_pred ---------------------CeEEEcCCCCCCCCCCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeec
Q 027039 132 ---------------------PLVSRADPHNLPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 132 ---------------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.|.++|+.+.++++++||+|+|.++.+++++ .++++++++.|||||.+++-..+
T Consensus 166 ~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 166 LARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 34777888887777889999999988888743 47999999999999998865554
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-12 Score=106.15 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=73.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC---CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~---g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
..++.+|||+|||+|..+..+++. +..+++|+|+++.+ +.++++|+.+++++ .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 367889999999999999998874 45699999999763 35888999988764 5899999
Q ss_pred ccchhhhC---HHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALF---PSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~---~~~~l~~~~~~LkpgG~lil~ 183 (229)
+...++.. +..+++++.++|||||.+++.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 87777663 478999999999999998865
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-12 Score=111.67 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=75.9
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC------------eEEEcCCCCCCCCCCceeEE
Q 027039 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVA 152 (229)
Q Consensus 86 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~V 152 (229)
..+.....++++.+|||||||+|..+..+++. |. +|+|+|+|+.++ ++...|..++ +++||.|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEE
Confidence 33344446689999999999999999999887 65 999999998743 3555666554 4789999
Q ss_pred Ecccchhhh---CHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
++..+.+|. ++..+++++.++|||||.+++..
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 998777776 34789999999999999998765
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=108.89 Aligned_cols=129 Identities=9% Similarity=0.046 Sum_probs=94.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCCC-CCCceeEEEcc--c
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLPF-FDEAFDVAFTA--H 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~-~~~~fD~V~~~--~ 156 (229)
+++.+|||+|||+|..+..++.. +..+++|+|+|+.+ +.++++|+.+..+ .+++||+|+|| +
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 45679999999999999999875 55699999999873 4488888865433 24689999998 2
Q ss_pred chh---h-------------h----C----HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 157 LAE---A-------------L----F----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 157 ~~~---~-------------~----~----~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+.. . + + ..++++++.+.|+|||.+++.++. +....+.+++.+.++..++..+.
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---~Q~e~V~~ll~~~Gf~~v~v~kD 406 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---DQGAAVRGVLAENGFSGVETLPD 406 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---cHHHHHHHHHHHCCCcEEEEEEc
Confidence 110 0 0 1 246677778899999998876665 44567888888878877777766
Q ss_pred cCCeeEEEEEEecc
Q 027039 213 NGSNMTRILMRRTR 226 (229)
Q Consensus 213 ~~~~~~~~~~~~~~ 226 (229)
.....|.++.++.|
T Consensus 407 l~G~dR~v~~~~~~ 420 (423)
T PRK14966 407 LAGLDRVTLGKYMK 420 (423)
T ss_pred CCCCcEEEEEEEhh
Confidence 66666877766544
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=101.47 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=96.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCC--CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLP--FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~ 155 (229)
....+|||+|||+|..+..++++ +..+++|+|+++. .++++++|+.++. ....+||+|+||
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 45889999999999999999999 6579999999987 3559999998854 334579999999
Q ss_pred --c--------------chhhh---CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce--eEeeee-eec
Q 027039 156 --H--------------LAEAL---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF--VDAANV-TVN 213 (229)
Q Consensus 156 --~--------------~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~--~~~~~~-~~~ 213 (229)
+ ..+|. +.+++++...+.|||||.+.++.+. +...++.+++++.++ .++..| ...
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i~~V~p~~ 199 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRIQFVYPKI 199 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEEEEecCCC
Confidence 1 11222 3578899999999999999987774 566778888886444 444444 445
Q ss_pred CCeeEEEEEEecc
Q 027039 214 GSNMTRILMRRTR 226 (229)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (229)
|....+++.+-.|
T Consensus 200 ~k~A~~vLv~~~k 212 (248)
T COG4123 200 GKAANRVLVEAIK 212 (248)
T ss_pred CCcceEEEEEEec
Confidence 6666666665444
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=101.91 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=84.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC-------------CCeEEEcCCCCC---CCCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS-------------LPLVSRADPHNL---PFFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~-------------~~~~~~~d~~~~---~~~~~~fD~V~ 153 (229)
..++++++|||+|||+|.++..+++. + .+.|+++|+++. .+.++.+|+... ....++||+|+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEE
Confidence 35689999999999999999999998 3 568999999964 345778887642 22345899999
Q ss_pred cccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcc---cHHHH----HHHHhcCceeEeeeeee
Q 027039 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGR---EIKQI----VELFRTSRFVDAANVTV 212 (229)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~---~~~~l----~~l~~~~~~~~~~~~~~ 212 (229)
+... .. ....++.++.+.|||||.+++.+.....+ +.+++ .+.++..+|..++.++.
T Consensus 208 ~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 208 ADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred EeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 9642 23 33456679999999999999865443222 12222 35577777777776655
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=96.39 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.++.+|||+|||+|..+..++..+. +++++|+++.+ +.++.+|..+.+ .++||+|+++...++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 4567899999999999999999866 99999999873 346777876643 469999999832211
Q ss_pred h----------------------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 161 L----------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 161 ~----------------------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
. ...++++++.++|||||.++++.... ....++.+.+++.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~--~~~~~~~~~l~~~gf~ 159 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL--NGEPDTFDKLDERGFR 159 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--CChHHHHHHHHhCCCe
Confidence 1 13568999999999999988776552 2356677778777753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=8e-12 Score=106.66 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=78.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------------EEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||+|||+|..+..++..|..+|+|+|+++.+++ +..++. .+..+++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecCH
Confidence 578999999999999999988887779999999987332 333332 23346799999998654
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
. ....++.++.+.|||||.+++.-- ..+...++.+.+++. |..+
T Consensus 236 ~--~l~~ll~~~~~~LkpgG~li~sgi--~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 236 E--VIKELYPQFSRLVKPGGWLILSGI--LETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred H--HHHHHHHHHHHHcCCCcEEEEEeC--cHhHHHHHHHHHHcc-Ccee
Confidence 3 235788999999999999775432 245566777777765 4433
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=99.61 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=87.5
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------EEEcCCCC-CCCCCCceeEEEccc-chh----
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHN-LPFFDEAFDVAFTAH-LAE---- 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------~~~~d~~~-~~~~~~~fD~V~~~~-~~~---- 159 (229)
.+.-|||||||+|.-+..+.+.|+ ..+|+|+|+.|++ ++.+|+-+ +||..++||.+++.. +.|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeeccc
Confidence 367899999999999999999996 9999999999654 66777665 899999999999862 211
Q ss_pred --hh-CH----HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeec
Q 027039 160 --AL-FP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVN 213 (229)
Q Consensus 160 --~~-~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 213 (229)
.. +| ..|+..++..|++|++.++-+......+.+.+...-...+|-.=.-|+.+
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~P 189 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWP 189 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecc
Confidence 11 23 45788899999999998887776555555556655556665544444444
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=111.85 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------CeEEEcCCC--CCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPH--NLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------~~~~~~d~~--~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||||||+|..+..+++.+ .+|+|+|+++.+ +.++++|+. .+++++++||+|+++...+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 467799999999999999999885 499999999873 347788886 4677889999999998888
Q ss_pred hhC---HHHHHHHHHhccccCcEEEEEeecC----------C---cccHHHHHHHHhcCceeEe
Q 027039 160 ALF---PSRFVGEMERTVKIGGVCMVLMEEC----------A---GREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 160 ~~~---~~~~l~~~~~~LkpgG~lil~~~~~----------~---~~~~~~l~~l~~~~~~~~~ 207 (229)
++. ..++++++.++|||||.+++.-... + -.......++|..+++...
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 773 4689999999999999987642110 0 0135567778888777665
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-12 Score=102.29 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=82.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCC---CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLP---FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~V~~~ 155 (229)
+...++||||||+|.++..++.. +...++|+|+++. .+.++++|+.+++ ++++++|.|+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 35679999999999999999987 6679999999986 3458889987643 456799999987
Q ss_pred cchhhh---------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc-eeEe
Q 027039 156 HLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR-FVDA 207 (229)
Q Consensus 156 ~~~~~~---------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~-~~~~ 207 (229)
.-..+. ....+++++.++|||||.+++.++. ......+.+.+.... |..+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHhCCCeEec
Confidence 322111 1257999999999999998877765 334555666666544 4433
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=104.97 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=87.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------------EEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.+++.+|||+|||||.++++.++.|..+++|+|+++..++ ....+.... ...++||+|++|-+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-~~~~~~DvIVANIL 238 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-PENGPFDVIVANIL 238 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-cccCcccEEEehhh
Confidence 3699999999999999999999999989999999987332 111111111 12369999999865
Q ss_pred hhhhCH-HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 158 AEALFP-SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 158 ~~~~~~-~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
.+ + .++..++.+.+||||++++.-=- ....+.+.+.+.+.+|.-+......++
T Consensus 239 A~---vl~~La~~~~~~lkpgg~lIlSGIl--~~q~~~V~~a~~~~gf~v~~~~~~~eW 292 (300)
T COG2264 239 AE---VLVELAPDIKRLLKPGGRLILSGIL--EDQAESVAEAYEQAGFEVVEVLEREEW 292 (300)
T ss_pred HH---HHHHHHHHHHHHcCCCceEEEEeeh--HhHHHHHHHHHHhCCCeEeEEEecCCE
Confidence 55 4 46788999999999997754322 334667888998888888887777666
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=103.71 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=84.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEc-----CC---CCCCCCCCceeEEEcccchhhhCHHH
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA-----DP---HNLPFFDEAFDVAFTAHLAEALFPSR 165 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~-----d~---~~~~~~~~~fD~V~~~~~~~~~~~~~ 165 (229)
..++.+|||+|||+|..+..++..|..+|+|+|+++.+++.... +. ..++..+.+||+|+++...+ ....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~ 194 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLE 194 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHH
Confidence 36889999999999999998888877679999999885541111 11 11222233799999974433 2356
Q ss_pred HHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 166 FVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 166 ~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
++.++.+.|||||.+++.--. ......+.+.+.+.+|.-+......++.
T Consensus 195 l~~~~~~~LkpgG~lilsgi~--~~~~~~v~~~l~~~Gf~~~~~~~~~~W~ 243 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGIL--EEQADEVLEAYEEAGFTLDEVLERGEWV 243 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECc--HhhHHHHHHHHHHCCCEEEEEEEeCCEE
Confidence 789999999999998865322 4456778888888888776666655553
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=97.86 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------CeEEEcCCCC-C-CCCCCceeEEEcccchhhh-CH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------PLVSRADPHN-L-PFFDEAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------~~~~~~d~~~-~-~~~~~~fD~V~~~~~~~~~-~~ 163 (229)
+++.+|||+|||+|..+..+++....+++|+|+++.+ ++++++|+.+ + ++++++||+|++++..+|+ ++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 6788999999999999999987643488999999763 4688888876 4 4778899999999888888 89
Q ss_pred HHHHHHHHhccccCcEEEEEeecC-------------------------------CcccHHHHHHHHhcCceeEeeeeee
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEEC-------------------------------AGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~~-------------------------------~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.++++++.+.++++ ++.++.. ...+..++.+++...+|.-+.....
T Consensus 92 ~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 92 EEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred HHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 99999998877653 2222110 1235677888888888887776544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=103.18 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=90.3
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcc--cch
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA--HLA 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~--~~~ 158 (229)
.+|||+|||+|..+..++.. +..+++|+|+++.+ +.++++|..+ ++++++||+|++| ++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 68999999999999999987 54699999999862 5577888765 3444589999997 111
Q ss_pred h-----------h------------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeeeec
Q 027039 159 E-----------A------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVTVN 213 (229)
Q Consensus 159 ~-----------~------------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~ 213 (229)
. + + ....+++++.+.|+|||.+++.++.. ....+.+++. ..++..+..++..
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---QQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---HHHHHHHHHHhcCCCceeEEecCC
Confidence 0 0 0 23567889999999999988777753 3456677777 4567677667666
Q ss_pred CCeeEEEEEEe
Q 027039 214 GSNMTRILMRR 224 (229)
Q Consensus 214 ~~~~~~~~~~~ 224 (229)
....|.++.++
T Consensus 272 ~g~~R~~~~~~ 282 (284)
T TIGR00536 272 NGKERVVLGFY 282 (284)
T ss_pred CCCceEEEEEe
Confidence 66667777654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-11 Score=102.76 Aligned_cols=116 Identities=15% Similarity=0.222 Sum_probs=85.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------------EEEcCCCCCCCCCCceeEEEcccchh
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
..++.+|||+|||||.++++.+..|..+|+|+|+++..+. +......+ ...++||+|++|=+..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--LVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--TCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--cccccCCEEEECCCHH
Confidence 4788999999999999999999999989999999987322 32222222 2358999999985444
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
. ...++..+.+.|||||++++. .--......+.+.|++ ++.-+......++.
T Consensus 237 v--L~~l~~~~~~~l~~~G~lIlS--GIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~ 288 (295)
T PF06325_consen 237 V--LLELAPDIASLLKPGGYLILS--GILEEQEDEVIEAYKQ-GFELVEEREEGEWV 288 (295)
T ss_dssp H--HHHHHHHCHHHEEEEEEEEEE--EEEGGGHHHHHHHHHT-TEEEEEEEEETTEE
T ss_pred H--HHHHHHHHHHhhCCCCEEEEc--cccHHHHHHHHHHHHC-CCEEEEEEEECCEE
Confidence 2 245777899999999997753 3224566788888987 88888777777774
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=97.30 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=80.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC----------------CeEEEcCCCCC-CCCCCceeEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL----------------PLVSRADPHNL-PFFDEAFDVA 152 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~----------------~~~~~~d~~~~-~~~~~~fD~V 152 (229)
..+.++.+|||+|||+|.++..++.. +.++|+++|+++.+ +.++.+|..+. +..++.||.|
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence 35678999999999999999998765 34699999999762 33666777653 3334689999
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
+++. ....+..+++++.+.|||||++++.+.. .+...++.+.+++.+|
T Consensus 116 ~~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 116 FIGG--GSEKLKEIISASWEIIKKGGRIVIDAIL--LETVNNALSALENIGF 163 (198)
T ss_pred EECC--CcccHHHHHHHHHHHcCCCcEEEEEeec--HHHHHHHHHHHHHcCC
Confidence 9853 1225788999999999999998764443 4556677777776555
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=99.38 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=69.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
.++++.+|||||||+|..+..+++. + .++|+++|+++.+ +.++.+|..+....+++||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 4578899999999999999998876 3 4699999999761 45788898875445679999999
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+....+. ..++.+.|||||++++.+..
T Consensus 149 ~~~~~~~-----~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 149 TAAASTI-----PSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ccCcchh-----hHHHHHhcCcCcEEEEEEcC
Confidence 7554432 24688999999998876654
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-11 Score=100.86 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=91.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc--
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA-- 155 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~-- 155 (229)
..++.+|||+|||+|..+..++.. +..+++|+|+++. .+.++.+|..+. +.+++||+|+++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 356789999999999999999987 5569999999975 245777777542 335799999996
Q ss_pred cchh------------------------hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 156 HLAE------------------------AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 156 ~~~~------------------------~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
++.. .. ....+++++.+.|||||.+++.++. .....+.+++.+.+|..+...
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALLAAAGFADVETR 261 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHHHhCCCceeEEe
Confidence 1100 01 1356788889999999998876643 344668888888888777766
Q ss_pred eecCCeeEEEEEE
Q 027039 211 TVNGSNMTRILMR 223 (229)
Q Consensus 211 ~~~~~~~~~~~~~ 223 (229)
.......|.++.+
T Consensus 262 ~d~~~~~r~~~~~ 274 (275)
T PRK09328 262 KDLAGRDRVVLGR 274 (275)
T ss_pred cCCCCCceEEEEE
Confidence 5555555666543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=99.64 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCC-CCCCceeEEEcccch
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLP-FFDEAFDVAFTAHLA 158 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~-~~~~~fD~V~~~~~~ 158 (229)
..++.+|||||||+|..+..+++.+. +++++|+++.. +.++..+..+.+ ..+++||+|++.++.
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35788999999999999999988865 89999999763 346667776654 345799999999887
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++. ++..+++++.+.|+|||.+++...
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 877 899999999999999999886643
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-11 Score=94.05 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++.+|||+|||+|..+..++..+ .+++++|+++.+ +.++++|..+ ++.+++||+|+++.-
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 577899999999999999999886 499999999762 4566777665 344568999998732
Q ss_pred hhh---------------------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 158 AEA---------------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 158 ~~~---------------------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
... . ...++++++.++|||||.+++++... .....+.+.+.+.+|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCHHHHHHHHHHCCCeee
Confidence 111 1 14668999999999999988777652 344668888887776443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=99.64 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=71.0
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeE
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
++...++++.+|||||||+|..+..+++. + .++|+++|+++. .+.++.+|......++++||+
T Consensus 69 ~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 69 CELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDR 148 (212)
T ss_pred HHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCE
Confidence 33335688999999999999999998877 3 359999999976 256888998876556789999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
|++..... .....+.+.|||||++++...
T Consensus 149 I~~~~~~~-----~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 149 IYVTAAGP-----DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred EEECCCcc-----cchHHHHHhhCCCcEEEEEEc
Confidence 99864332 223466778999999887664
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=100.75 Aligned_cols=119 Identities=20% Similarity=0.269 Sum_probs=88.2
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc--c
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH--L 157 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~--~ 157 (229)
.+.+|||+|||+|..+..++.. +..+++|+|+++. .+.++.+|+.+ ++++++||+|+++- .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4568999999999999999987 5569999999976 24578888866 45678999999961 1
Q ss_pred h----hhh---------------------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 158 A----EAL---------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 158 ~----~~~---------------------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
. +.. ....+++++.+.|+|||.+++..+. ....++.+++.+.+|..+.....
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHHHhCCCCceEEEeC
Confidence 0 000 1246789999999999998877654 34567888888888887776555
Q ss_pred cCCeeE
Q 027039 213 NGSNMT 218 (229)
Q Consensus 213 ~~~~~~ 218 (229)
..+..|
T Consensus 243 ~~~~~r 248 (251)
T TIGR03534 243 LAGKDR 248 (251)
T ss_pred CCCCcC
Confidence 544433
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=105.82 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC--------------eEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
...+|||+|||+|.++..+++. +..+++++|+++.++ .++.+|..+. .+++||+|++|.-.|.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccC
Confidence 3568999999999999999987 556999999997532 3566666542 3578999999843332
Q ss_pred -----h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 161 -----L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 161 -----~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
. ...++++++.+.|||||.++++....-.|. ..+.+.|+.++.+
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~-~~l~~~Fg~~~~l 323 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP-DLLDETFGSHEVL 323 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH-HHHHHHcCCeEEE
Confidence 1 357899999999999999998887655444 3455577665433
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-11 Score=105.70 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=77.7
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC------------------eEEEcCCCCCCCCCCceeEEEcccc
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~------------------~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
+.+|||+|||+|..+..+++. +..+|+++|.|+.++ ++..+|..+. +++++||+|+||--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 469999999999999999987 566999999996622 3555555432 23568999999822
Q ss_pred h---hhh---CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 158 A---EAL---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 158 ~---~~~---~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
. +.. ...+++.++.+.|||||.++++......|. ..+.+.|++++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~-~~L~~~fg~~~~ 359 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYF-HKLKKIFGNCTT 359 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHH-HHHHHHcCCceE
Confidence 2 111 136789999999999999998876554443 556677876644
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.3e-11 Score=96.82 Aligned_cols=114 Identities=22% Similarity=0.236 Sum_probs=89.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------------------CCeEEEcCCCCCCCC-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------------------LPLVSRADPHNLPFF- 145 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------------------~~~~~~~d~~~~~~~- 145 (229)
..++.+||+.|||.|..+..|++.|+ +|+|+|+|+. .+++.++|+.+++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34678999999999999999999999 8999999865 235788898887632
Q ss_pred --CCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeecCCc--------ccHHHHHHHHhc-CceeEee
Q 027039 146 --DEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECAG--------REIKQIVELFRT-SRFVDAA 208 (229)
Q Consensus 146 --~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~~--------~~~~~l~~l~~~-~~~~~~~ 208 (229)
.++||+|+-..+..++.| .+.++.+.++|+|||.+++++-..+. -+..++.++|.. +.+..+.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~ 196 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELID 196 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEee
Confidence 268999998877777744 67899999999999998887754321 146788889974 3554444
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.6e-11 Score=101.84 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=82.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
...+++.+|||+|||+|.++...+..+. .++|+|+++.+ +.+.++|+.++|+.+++||+|+++-
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECC
Confidence 3457899999999999999988777765 99999999862 3578899999998888999999971
Q ss_pred c-------hhh-h--CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 157 L-------AEA-L--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 157 ~-------~~~-~--~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
- ..+ . ...++++++.++|||||++++.+... .+ +.++++..++
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~---~~~~~~~~g~ 309 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--ID---LESLAEDAFR 309 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CC---HHHHHhhcCc
Confidence 1 111 1 24789999999999999998887652 23 3455666555
|
This family is found exclusively in the Archaea. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=90.30 Aligned_cols=113 Identities=13% Similarity=0.046 Sum_probs=86.4
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCC-CCCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNL-PFFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~-~~~~~~fD~V~ 153 (229)
...+++++.++|||||+|..+..++.. +.++|+++|-+++ .+.++.+++.+. +- ..++|.||
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~-~~~~daiF 107 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD-LPSPDAIF 107 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC-CCCCCEEE
Confidence 345689999999999999999999955 6789999999887 445888887763 32 22799999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeee
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
...-. ....+++.+...|||||++++.+-. -++...+.+.+++.++.++.+
T Consensus 108 IGGg~---~i~~ile~~~~~l~~ggrlV~nait--lE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 108 IGGGG---NIEEILEAAWERLKPGGRLVANAIT--LETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred ECCCC---CHHHHHHHHHHHcCcCCeEEEEeec--HHHHHHHHHHHHHcCCceEEE
Confidence 86443 3788999999999999998766655 556666777777666633333
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.9e-12 Score=91.74 Aligned_cols=89 Identities=30% Similarity=0.371 Sum_probs=70.9
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCC--CCCCceeEEEcc--c
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLP--FFDEAFDVAFTA--H 156 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~~~--~ 156 (229)
|.+|||+|||+|.++..+++.+..+++|+|+++. .++++++|..+.. +++++||+|++| +
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5689999999999999999887459999999987 2468889988764 778999999998 2
Q ss_pred chhhh-------CHHHHHHHHHhccccCcEEEEEee
Q 027039 157 LAEAL-------FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 157 ~~~~~-------~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
..... ....+++++.+.|||||.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 22111 136789999999999999998775
|
... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=93.29 Aligned_cols=103 Identities=16% Similarity=0.052 Sum_probs=72.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCC-CCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHN-LPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~-~~~~~~~fD~V~~~ 155 (229)
..+++.+|||+|||+|.++..++.. +.++|+++|+++.+ +.++.+|+.+ ++.....+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 4468899999999999999999865 44699999999762 4577777754 22222345776653
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~ 200 (229)
.. ....++++++.+.|||||++++.... ......+.+.++
T Consensus 117 ~~---~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~ 156 (196)
T PRK07402 117 GG---RPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLA 156 (196)
T ss_pred CC---cCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHH
Confidence 21 24578999999999999998877654 334444555554
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=99.96 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=73.6
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
+.+...++++.+|||||||+|..+..+++. +..+++++|..+. .++++.+|+.+.++++ +|+
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~ 218 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADA 218 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCE
Confidence 333344578899999999999999999988 6669999997321 2458889988766543 699
Q ss_pred EEcccchhhhCH---HHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFP---SRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~ 183 (229)
|++.++.++.++ .++++++++.|||||++++.
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998877776633 56899999999999999866
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=95.00 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCC-CCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFF-DEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~-~~~fD~V~~~~~~~ 159 (229)
.+.+|||+|||+|..+..+++.+. +++++|+++.+ +.+...|+.+.+.. +++||+|++++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 478999999999999999988765 79999998652 44666777766544 37999999998888
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+. ++..+++++.+.|+|||.+++...
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 77 899999999999999999886653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=95.72 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=68.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||||||+|..+..+++. + .++|+++|+++. .+.++.+|..+.....++||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 4578999999999999999999987 3 346999999976 2457888887754445789999986
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.... .+...+.+.|||||++++.+..
T Consensus 154 ~~~~-----~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 154 AAGP-----KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCcc-----cccHHHHHhcCcCcEEEEEEcC
Confidence 4322 2345678899999998876543
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-10 Score=88.67 Aligned_cols=118 Identities=12% Similarity=0.147 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchhhhC
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF 162 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~ 162 (229)
.-.++||+|||.|.++..|+.+ +.+++++|+++. .++++++|+.+. .++++||+|+.+.+.++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCC
Confidence 3468999999999999999999 569999999976 456899998775 3679999999998888773
Q ss_pred -H---HHHHHHHHhccccCcEEEEEeecC-------CcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 163 -P---SRFVGEMERTVKIGGVCMVLMEEC-------AGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 163 -~---~~~l~~~~~~LkpgG~lil~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
. ..++..+.+.|+|||.+++..-.. ....-+.+.++|++ .+.++..++-.|.+
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~-~~~~~~~~~~~~~~ 184 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQE-HLTEVERVECRGGS 184 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHH-HSEEEEEEEEE-SS
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHH-HhhheeEEEEcCCC
Confidence 2 468899999999999988765431 12244556666653 45666666555544
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=95.29 Aligned_cols=111 Identities=20% Similarity=0.178 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~L 174 (229)
.....|.|+|||.+.++. .... .|...|+.+....++.+|+.++|++|++.|+++..-.+...+...++.|+.|+|
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiL 254 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERH-KVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRIL 254 (325)
T ss_pred cCceEEEecccchhhhhh---cccc-ceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHh
Confidence 567789999999998765 2234 899999999999999999999999999999999864444458899999999999
Q ss_pred ccCcEEEEEeecCCcccHHHHHHHHhcCceeEeee
Q 027039 175 KIGGVCMVLMEECAGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 175 kpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
||||.+++.--...-.+...+.+.+...+|...+.
T Consensus 255 k~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 255 KPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred ccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 99999987655556667888999999999876654
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-11 Score=95.53 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=68.9
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------------EEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
..++|+|||+|..++.+++. +.+|+|+|+|+.|++ +...+..++--.+++.|+|++....|.+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 38999999999888888988 559999999998654 2222222222238999999999888889
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
+..++.+++.|+||++|.++.+..+.
T Consensus 114 dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99999999999999887544454443
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-10 Score=95.18 Aligned_cols=122 Identities=20% Similarity=0.287 Sum_probs=89.7
Q ss_pred eEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC---------------eEEEcCCCCCCCCCCceeEEEcc--cchhh
Q 027039 99 KVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA--HLAEA 160 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~V~~~--~~~~~ 160 (229)
+|||+|||+|..+..++.. +..+|+|+|+|+..+ .++++|..+. . .++||+|++| ++...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence 7999999999999999998 667999999999722 2444443332 1 3489999999 33322
Q ss_pred ---h-------CH--------------HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc-eeEeeeeeecCC
Q 027039 161 ---L-------FP--------------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR-FVDAANVTVNGS 215 (229)
Q Consensus 161 ---~-------~~--------------~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~ 215 (229)
. +| .+++.++.+.|+|||.+++-.+. .+.+.+.++|.+.+ +..+......+.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~---~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL---TQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC---CcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 0 12 46678899999999998877775 34577888888888 677777777777
Q ss_pred eeEEEEEEec
Q 027039 216 NMTRILMRRT 225 (229)
Q Consensus 216 ~~~~~~~~~~ 225 (229)
..+.+..++.
T Consensus 268 ~~rv~~~~~~ 277 (280)
T COG2890 268 RDRVVLAKLR 277 (280)
T ss_pred ceEEEEEEec
Confidence 7677766554
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=94.17 Aligned_cols=117 Identities=24% Similarity=0.339 Sum_probs=84.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------------------CeEEEcCCCCCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------------------PLVSRADPHNLPFF 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------------------~~~~~~d~~~~~~~ 145 (229)
..+++.+||..|||.|.....|++.|+ +|+|+|+|+.. +.+.++|+.+++..
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 457888999999999999999999998 99999999762 23677898887643
Q ss_pred C-CceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeecCC---------cccHHHHHHHHh-cCceeEeeee
Q 027039 146 D-EAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFR-TSRFVDAANV 210 (229)
Q Consensus 146 ~-~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~---------~~~~~~l~~l~~-~~~~~~~~~~ 210 (229)
. ++||+|+=......+.| .+..+.+.++|||||.+++++-... .-+..++.++|. ..++..++..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~ 191 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEE 191 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecc
Confidence 3 58999998766665543 7889999999999999444432211 125678889998 3344444443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.4e-10 Score=93.75 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCChhhHH-HH-hC-CCCeEEEecCCCC-----------------CCeEEEcCCCCCCCCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMA-FN-SI-GVADVTGVELMDS-----------------LPLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~-l~-~~-g~~~v~~vD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
.++.+|+|||||.|.++.. ++ .. +.++++++|++++ .+.|..+|+.+.+-..+.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3789999999998855444 33 23 6679999999975 356888998876433578999999
Q ss_pred ccchhh--hCHHHHHHHHHhccccCcEEEEEe
Q 027039 155 AHLAEA--LFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 155 ~~~~~~--~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
..+.+. .++.++++++.+.|+|||.+++-.
T Consensus 202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 843333 268999999999999999977554
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=103.65 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcc--c
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA--H 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~--~ 156 (229)
++.+|||+|||+|..+..++.. +..+++++|+|+.+ +.++++|+.+ ++++++||+|++| +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 3568999999999999998876 66699999999762 3467777654 2335689999997 1
Q ss_pred chh---------h--------h--------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeee
Q 027039 157 LAE---------A--------L--------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 157 ~~~---------~--------~--------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
+.. . + ....+++++.+.|+|||.+++.++. .....+.+++.+.++..+....
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---KQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---chHHHHHHHHHhcCCCceEEEe
Confidence 110 0 0 1245678888999999998876654 3456677788777776555555
Q ss_pred ecCCeeEEEE
Q 027039 212 VNGSNMTRIL 221 (229)
Q Consensus 212 ~~~~~~~~~~ 221 (229)
......|.++
T Consensus 294 D~~g~~R~v~ 303 (506)
T PRK01544 294 DLQGHSRVIL 303 (506)
T ss_pred cCCCCceEEE
Confidence 5444445444
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=96.89 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcc--
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA-- 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~-- 155 (229)
+++.+|||+|||+|..+..++.. +..+++|+|+|+.+ +.++++|+.+. +++++||+|++|
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC
Confidence 34578999999999999999987 44599999999762 45788887542 345689999997
Q ss_pred cch--------hhh--C--------------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 156 HLA--------EAL--F--------------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 156 ~~~--------~~~--~--------------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
++. ... . ...+++++.+.|+|||++++.++. +...+.+++.+.++
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~~~~~ 267 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYPDVPF 267 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHHhCCC
Confidence 111 000 1 256788999999999998877764 33577888887654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=95.86 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC----C-CCeEEEecCCCCCC------------eEEEcCCCCCCCCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI----G-VADVTGVELMDSLP------------LVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~----g-~~~v~~vD~s~~~~------------~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++.+|||+|||+|..+..+++. | ..+++|+|+++.++ .+...+...+++++++||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 56789999999999998888752 2 24999999998743 3566677777777889999999988
Q ss_pred hhhh-CH--HHHHHHHHhccc
Q 027039 158 AEAL-FP--SRFVGEMERTVK 175 (229)
Q Consensus 158 ~~~~-~~--~~~l~~~~~~Lk 175 (229)
.+|+ ++ .++++++.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC
Confidence 8888 43 469999999998
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=94.55 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC---------------eEEEcCCCCCCCCCCceeEEEcc---
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTA--- 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~V~~~--- 155 (229)
..+.+|||+|||.|..+..+++. |..+++-+|.+...+ .+...|..+-. ++ +||+|+||
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-~~-kfd~IisNPPf 234 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-EG-KFDLIISNPPF 234 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-cc-cccEEEeCCCc
Confidence 34559999999999999999999 778999999996521 35556655533 33 99999999
Q ss_pred cchhhhC---HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 156 HLAEALF---PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 156 ~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
|-..... .++++.+..+.|++||.+.++....-.| ...+.++|++++.+
T Consensus 235 h~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y-~~~L~~~Fg~v~~l 286 (300)
T COG2813 235 HAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPY-EKKLKELFGNVEVL 286 (300)
T ss_pred cCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCCh-HHHHHHhcCCEEEE
Confidence 2222221 3689999999999999999888843322 34577888865544
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=94.77 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=89.6
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCCCCC---
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLPFF--- 145 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~--- 145 (229)
.++....+.||++|||.|.|+|.++.+|+.. +.++|+..|..++ .+.+.+.|+.+-.|.
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 3344457799999999999999999999976 6789999999876 355889998765553
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhcc-ccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTV-KIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~L-kpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
++.+|.|+. .+. +|+.++..+.+.| ||||++++..++ -++...+.+.++..+|..++-++.
T Consensus 111 ~~~~DavfL-Dlp---~Pw~~i~~~~~~L~~~gG~i~~fsP~--ieQv~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 111 ESDFDAVFL-DLP---DPWEAIPHAKRALKKPGGRICCFSPC--IEQVQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp TTSEEEEEE-ESS---SGGGGHHHHHHHE-EEEEEEEEEESS--HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCcccEEEE-eCC---CHHHHHHHHHHHHhcCCceEEEECCC--HHHHHHHHHHHHHCCCeeeEEEEE
Confidence 368999987 333 4899999999999 999998877776 667778888888888888764433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=100.31 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCC--CCCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNL--PFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~ 156 (229)
..+..+||||||+|.++..++.. +...++|+|+++. .+.++++|+..+ .++++++|.|+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 34568999999999999999988 6679999999865 344888998764 47789999999863
Q ss_pred chhhh-------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LAEAL-------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~~~~-------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
-..+. ....++.++.|+|||||.+.+.++.
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 22111 1268999999999999999988776
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-10 Score=92.23 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=94.8
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCcee
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD 150 (229)
.....+.++++|+|.|.|+|.++.+|+.. +.++|+..|+-+. .+.+..+|+.+.-+++ .||
T Consensus 87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vD 165 (256)
T COG2519 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVD 165 (256)
T ss_pred HHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccC
Confidence 44557899999999999999999999965 6689999999876 2446778888866654 999
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.|+. ...+|+++++.+.+.|||||.+++..++ .++.+...+..++.+|..++-++.
T Consensus 166 av~L----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~--veQv~kt~~~l~~~g~~~ie~~E~ 221 (256)
T COG2519 166 AVFL----DLPDPWNVLEHVSDALKPGGVVVVYSPT--VEQVEKTVEALRERGFVDIEAVET 221 (256)
T ss_pred EEEE----cCCChHHHHHHHHHHhCCCcEEEEEcCC--HHHHHHHHHHHHhcCccchhhhee
Confidence 9987 3335999999999999999998877776 667777778888778877775544
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-10 Score=91.91 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++.+|||+|||+|.++..++..+. +++|+|+++.+ +.+.++|+.+.+ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 35689999999999999999998865 99999999763 347778877765 78999999877
Q ss_pred hhhh---CHHHHHHHHHhccccCcEEE
Q 027039 158 AEAL---FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 158 ~~~~---~~~~~l~~~~~~LkpgG~li 181 (229)
..+. ....+++++.+++++++.+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 6655 24678899999888766544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=7e-10 Score=90.43 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=67.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++++.+|||+|||+|..+..++... .+++++|+++.+ ++++.+|..+.....++||+|++...
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45788999999999999999888874 489999998762 45778887553223578999998753
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.. .+.+++.+.|+|||.+++.+.
T Consensus 154 ~~-----~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 AP-----EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ch-----hhhHHHHHhcCCCcEEEEEEc
Confidence 33 234567889999999987776
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-10 Score=78.50 Aligned_cols=85 Identities=33% Similarity=0.412 Sum_probs=69.5
Q ss_pred eEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCC-CCCceeEEEcccchhh-h
Q 027039 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPF-FDEAFDVAFTAHLAEA-L 161 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~~~~~~-~ 161 (229)
+++|+|||.|..+..+++.+..+++++|+++. .+.+...|..+... ..++||+|+++...++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 58999999999999998865569999999865 23477777777553 5678999999977665 4
Q ss_pred -CHHHHHHHHHhccccCcEEEEE
Q 027039 162 -FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 -~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.+..+++.+.+.+||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 6788999999999999998865
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=93.78 Aligned_cols=93 Identities=11% Similarity=0.042 Sum_probs=67.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCCCC----------------eEEEcCCCC-CCCCCC----ceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSLP----------------LVSRADPHN-LPFFDE----AFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~~~----------------~~~~~d~~~-~~~~~~----~fD~ 151 (229)
.++.+|||+|||+|..+..+++.. ..+++++|+|+.++ .++++|+.+ .++... ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 577899999999999999998872 34999999998732 256888876 344332 2334
Q ss_pred EEcccchhhhC---HHHHHHHHHhccccCcEEEEEeecC
Q 027039 152 AFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 152 V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
+++.....++. ..+++++++++|+|||.+++-++..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 44444444443 4678999999999999998777653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=90.47 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC------------CeEEEcCCCCC-C-CCCCceeEEEcc--cch
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL------------PLVSRADPHNL-P-FFDEAFDVAFTA--HLA 158 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~------------~~~~~~d~~~~-~-~~~~~fD~V~~~--~~~ 158 (229)
++.+|||+|||+|.++..++.. +..+++++|+++.+ ..++++|+.+. + ...++||+|++| ++.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3468999999999999999876 44599999999873 34788887653 2 113579999998 221
Q ss_pred h------------h-----hC--------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEee
Q 027039 159 E------------A-----LF--------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 159 ~------------~-----~~--------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
. + ++ ..+++..+.+.|||||++++.+.. ....++.+++++.++....
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPLAVEAFARAGLIARV 237 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHHHHHHHHHCCCCcee
Confidence 0 0 00 246778888999999999977764 3456778888776664433
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.3e-10 Score=95.04 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=76.8
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc--cch
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA--HLA 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~~~ 158 (229)
.+|||+|||+|..+..++.. +..+|+++|+|+. .+.++++|+.+. +++++||+|++| ++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 68999999999999999987 5569999999976 245888887542 235689999997 111
Q ss_pred --------hh---------------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeE
Q 027039 159 --------EA---------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD 206 (229)
Q Consensus 159 --------~~---------------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~ 206 (229)
.. + ....+++++.+.|+|||.+++.+.. +..++.++|.+.++.-
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----~~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----SRVHLEEAYPDVPFTW 281 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHhhCCCEE
Confidence 00 0 1256789999999999998876664 2345788887755433
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=88.09 Aligned_cols=120 Identities=23% Similarity=0.223 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCC--CCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNL--PFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~--~~~~~~fD~V~~~ 155 (229)
+.+.+|||.+.|-|+.++...++|...|+.++.++. .++++.+|..+. .|.|.+||+|+..
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 569999999999999999999999879999998887 345788888773 4889999999986
Q ss_pred ----cchhhhCHHHHHHHHHhccccCcEEEEEeecCC-----cccHHHHHHHHhcCceeEeeeeeecC
Q 027039 156 ----HLAEALFPSRFVGEMERTVKIGGVCMVLMEECA-----GREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 156 ----~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~-----~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
....+++..++.+|++|+|||||+++=.+++.+ -+-...+.+.++..+|..+..+...+
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREAL 280 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhcc
Confidence 344455779999999999999999886676643 44567788999999999888775544
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.5e-10 Score=100.14 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=63.1
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---CCeEE----------EcCCCCCCCCCCceeEEEccc--chhhhC
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---LPLVS----------RADPHNLPFFDEAFDVAFTAH--LAEALF 162 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---~~~~~----------~~d~~~~~~~~~~fD~V~~~~--~~~~~~ 162 (229)
..+||||||.|.++.+|.+++. .+..+-++.. .++|. ..-.+.+||++++||+|+|.. +.++.+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhc
Confidence 4689999999999999999976 3434333322 22211 112456899999999999984 445554
Q ss_pred HHHHHHHHHhccccCcEEEEEeec
Q 027039 163 PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
-.-++-++-|+|+|||++++....
T Consensus 198 ~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 198 DGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred ccceeehhhhhhccCceEEecCCc
Confidence 456889999999999998866554
|
; GO: 0008168 methyltransferase activity |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=87.37 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=71.9
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeE
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
.+++...++++.+|||||||+|+.+.-+++... +|+.+|..+. .+.++++|...---+..+||.
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~ 141 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDR 141 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCE
Confidence 334444779999999999999999999999943 9999999876 366889998873224689999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|+........ | +.+.+.|||||++++.+..
T Consensus 142 I~Vtaaa~~v-P----~~Ll~QL~~gGrlv~PvG~ 171 (209)
T COG2518 142 IIVTAAAPEV-P----EALLDQLKPGGRLVIPVGS 171 (209)
T ss_pred EEEeeccCCC-C----HHHHHhcccCCEEEEEEcc
Confidence 9986332211 2 3356779999999988883
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-10 Score=93.31 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=87.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------EEEcCCCC-CC-CCCCceeEEEcccchh
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------VSRADPHN-LP-FFDEAFDVAFTAHLAE 159 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------~~~~d~~~-~~-~~~~~fD~V~~~~~~~ 159 (229)
....+-.++||+|||||..+.++..+- .+++|+|+|.+|+. ..+++... ++ ..+..||+|++..+..
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 333456799999999999999999984 49999999999765 22333322 11 3568999999998888
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEeecCC-------------cccHHHHHHHHhcCceeEee
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLMEECA-------------GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~~~~-------------~~~~~~l~~l~~~~~~~~~~ 208 (229)
.+ ....++......|+|||.+.+.+.... +++..-+.+....+++.-+.
T Consensus 200 YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 200 YLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred hhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence 88 889999999999999999999887643 22444566677766655443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.02 E-value=6e-10 Score=90.64 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=66.4
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeE
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
++...++++.+|||||||+|+.+..++.. | .+.|+++|..+. .+.++.+|...-.-...+||.
T Consensus 65 l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~ 144 (209)
T PF01135_consen 65 LEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDR 144 (209)
T ss_dssp HHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEE
T ss_pred HHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCE
Confidence 33335799999999999999999999988 4 457999999987 456889997763334578999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|++...... .| ..+.+.||+||++++.+..
T Consensus 145 I~v~~a~~~-ip----~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 145 IIVTAAVPE-IP----EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp EEESSBBSS-------HHHHHTEEEEEEEEEEESS
T ss_pred EEEeeccch-HH----HHHHHhcCCCcEEEEEEcc
Confidence 998743331 12 4477789999999987775
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.4e-09 Score=85.88 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++.+|||||||+|..+..+++.+. .++|+|+++.+ +.+..+|. +..+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcch
Confidence 35678999999999999999998876 79999998763 34666663 334688999999877
Q ss_pred hhhh---CHHHHHHHHHhccccCcE
Q 027039 158 AEAL---FPSRFVGEMERTVKIGGV 179 (229)
Q Consensus 158 ~~~~---~~~~~l~~~~~~LkpgG~ 179 (229)
.+|. ....+++++.+.+++++.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 7664 235677888776654443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=89.46 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhh-CHHHHHH
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVG 168 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~l~ 168 (229)
...++||||+|.|..+..++.. +.+|+++|.|+.|.. +...+..++.-.+.+||+|.|-++...- .|..+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLR 172 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHH
Confidence 4568999999999999999887 679999999988533 3333444444345789999998765544 9999999
Q ss_pred HHHhccccCcEEEEEe
Q 027039 169 EMERTVKIGGVCMVLM 184 (229)
Q Consensus 169 ~~~~~LkpgG~lil~~ 184 (229)
+|++.|+|+|++++.+
T Consensus 173 ~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 173 DIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999988774
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.98 E-value=7e-09 Score=82.71 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=85.5
Q ss_pred HHHHHHHhcccCCCCC-eEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCC
Q 027039 83 HFFKHLQGKSLLFNHS-KVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~-~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~ 145 (229)
+++..+.-...+.... +++|||+|.|..++.++-. +..+++.+|.+.. .+.++++++++ +..
T Consensus 34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~ 112 (184)
T PF02527_consen 34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEY 112 (184)
T ss_dssp HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTT
T ss_pred HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-ccc
Confidence 4445554444555544 8999999999999999987 7779999999876 45688888888 445
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcC
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~ 202 (229)
..+||+|++..+.. ...++.-+.+.+++||.+++.-+....++..+....++..
T Consensus 113 ~~~fd~v~aRAv~~---l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~ 166 (184)
T PF02527_consen 113 RESFDVVTARAVAP---LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKL 166 (184)
T ss_dssp TT-EEEEEEESSSS---HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCC
T ss_pred CCCccEEEeehhcC---HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHh
Confidence 78999999988777 7888899999999999988776654444555555555533
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=81.82 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=89.7
Q ss_pred CCCC-eEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC----------------eEEEcCCCCC--CC------CCCc
Q 027039 95 FNHS-KVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNL--PF------FDEA 148 (229)
Q Consensus 95 ~~~~-~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~----------------~~~~~d~~~~--~~------~~~~ 148 (229)
.+.. +|||||||+|..+..+++. +.....-.|+++... .-+..|+.+- +. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 5999999999999999988 766777788876621 1233454443 32 2469
Q ss_pred eeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeecC--C----------------------cccHHHHHHHHhc
Q 027039 149 FDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEEC--A----------------------GREIKQIVELFRT 201 (229)
Q Consensus 149 fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~--~----------------------~~~~~~l~~l~~~ 201 (229)
||.|++.++.|... -..+++.+.++|+|||.+++.-+.. + --+++.+.++...
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 99999998888773 3778999999999999988663331 1 1145566667777
Q ss_pred CceeEeeeeeecCCeeEEEEEEe
Q 027039 202 SRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
.++.-...+.-+.-. ..++|+|
T Consensus 183 ~GL~l~~~~~MPANN-~~Lvfrk 204 (204)
T PF06080_consen 183 HGLELEEDIDMPANN-LLLVFRK 204 (204)
T ss_pred CCCccCcccccCCCC-eEEEEeC
Confidence 777777777666665 4455543
|
The function of this family is unknown. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-09 Score=88.66 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCC-CCCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNL-PFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~-~~~~~~fD~V~~~~ 156 (229)
.++.+|||||||+|..+..++.. +..+++++|+++.. +.++.+|+.+. .-..++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 46789999999999999999877 66799999998772 34677776542 22246899999864
Q ss_pred chhh-----hCHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LAEA-----LFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~~~-----~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+... +...++++++.+.|+|||.+++.+-.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3221 22378999999999999998875443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-09 Score=91.57 Aligned_cols=81 Identities=10% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------------------eEEEcCCCCCCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------------LVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------------------~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
++.+|||+|||+|..+..+++.|. +|+|+|+|+.++ .+..+|+.++ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 578999999999999999999876 999999998743 2444554433 5789999998
Q ss_pred cchhhh-CH--HHHHHHHHhccccCcEEE
Q 027039 156 HLAEAL-FP--SRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 156 ~~~~~~-~~--~~~l~~~~~~LkpgG~li 181 (229)
.+.+|. +. ..+++.+.+ +.+||.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 776665 21 345555554 45665544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.8e-09 Score=88.43 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=69.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------------CeEEEcCCCC-CCCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------------PLVSRADPHN-LPFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------------~~~~~~d~~~-~~~~~~~fD~V 152 (229)
.++.+||+||||.|..+..+.+. +..+|+++|+++.+ ++++.+|+.. +...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45789999999999999999887 67799999999872 2366677655 22346799999
Q ss_pred Ecccch-----hhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++.... .++...++++.+.+.|+|||.+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 986322 122347889999999999999886544
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-09 Score=90.20 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=67.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||||||+|..+..+++. + .+.|+++|+++.+ +.++++|..+.+...++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 4578899999999999999999887 3 2479999999862 457788877655555789999986
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.... .....+.+.|+|||++++....
T Consensus 157 ~g~~-----~ip~~~~~~LkpgG~Lvv~~~~ 182 (322)
T PRK13943 157 VGVD-----EVPETWFTQLKEGGRVIVPINL 182 (322)
T ss_pred CchH-----HhHHHHHHhcCCCCEEEEEeCC
Confidence 3322 1233567899999998876643
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-09 Score=94.45 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=70.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcc-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTA- 155 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~- 155 (229)
..++.+|||+|||+|..+..+++. +.++|+++|+++.+ +.++.+|+.+++ ++++||.|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 367899999999999999888875 34599999999872 457788888765 46789999963
Q ss_pred ------cch------hhhC----------HHHHHHHHHhccccCcEEEEEeecC
Q 027039 156 ------HLA------EALF----------PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 156 ------~~~------~~~~----------~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
.+. +... ..+++.++.+.|||||+++..+-.-
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 111 1111 2468999999999999988776543
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-09 Score=93.97 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCC----CCCCceeEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLP----FFDEAFDVA 152 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~----~~~~~fD~V 152 (229)
.+++.+|||+|||+|..+..+++. +.+.|+++|+++. .+.++.+|+.+++ +.+++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 467899999999999999999886 3469999999986 2457788888765 446789999
Q ss_pred Eccc------ch-hhhC----------------HHHHHHHHHhccccCcEEEEEeecCC-cccHHHHHHHHh
Q 027039 153 FTAH------LA-EALF----------------PSRFVGEMERTVKIGGVCMVLMEECA-GREIKQIVELFR 200 (229)
Q Consensus 153 ~~~~------~~-~~~~----------------~~~~l~~~~~~LkpgG~lil~~~~~~-~~~~~~l~~l~~ 200 (229)
++.. +. ++.+ ..+++.++.+.|||||+++..+-.-. .+....+..+.+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~ 401 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLA 401 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH
Confidence 9741 11 1001 35789999999999999876653322 233333444444
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=85.57 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=65.7
Q ss_pred eEEEEcCCCChhhHHHHhC-CC--CeEEEecCCCCCCe--------------EEEcCCC----CCCCCCCceeEEEcccc
Q 027039 99 KVLCVSAGAGHEVMAFNSI-GV--ADVTGVELMDSLPL--------------VSRADPH----NLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~-g~--~~v~~vD~s~~~~~--------------~~~~d~~----~~~~~~~~fD~V~~~~~ 157 (229)
+||+||||.|.....+.+. +. -.+.++|.|+..++ .-..|+. .-|.+.+++|+|++..+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999998888766 32 58999999998544 1122222 23466799999999988
Q ss_pred hhhhCH---HHHHHHHHhccccCcEEEEE
Q 027039 158 AEALFP---SRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 158 ~~~~~~---~~~l~~~~~~LkpgG~lil~ 183 (229)
...+.| ..++.++.++|||||.+++-
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 777755 67899999999999997744
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-09 Score=88.60 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+++.+|||+|||+|..+..+++. +.+.|+++|+++.+ +.+++.|....+...+.||.|+++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 478899999999999999998876 34689999999872 3477778776655556799999741
Q ss_pred ----c--h-h------hh----------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 ----L--A-E------AL----------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ----~--~-~------~~----------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
. . . .. ...+++.++.+.|||||+++..+-.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 0 0 0 00 1245889999999999998766544
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.8e-09 Score=94.35 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=72.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCC-CCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLP-FFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~-~~~~~fD~V~~ 154 (229)
..+++.+|||+|||+|..+..+++. +.++|+++|+++.+ +.++++|+..++ +.+++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3478899999999999999999886 35699999999872 357788888765 45678999997
Q ss_pred cc----ch---------hhh----------CHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 155 AH----LA---------EAL----------FPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 155 ~~----~~---------~~~----------~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
.. .. +.. ...+++.++.+.|||||.++..+-.-.
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 41 11 010 125678999999999999876665533
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.4e-09 Score=93.10 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCC--CCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLP--FFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~--~~~~~fD~V~~~~ 156 (229)
.+++.+|||+|||+|..+..+++. +.+.|+++|+++.+ +.++.+|+.+.+ +.+++||.|+++.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 468899999999999999999987 33699999999872 347888988754 3457899999641
Q ss_pred ----c---------hhhhC----------HHHHHHHHHhccccCcEEEEEeec-CCcccHHHHHHHHh
Q 027039 157 ----L---------AEALF----------PSRFVGEMERTVKIGGVCMVLMEE-CAGREIKQIVELFR 200 (229)
Q Consensus 157 ----~---------~~~~~----------~~~~l~~~~~~LkpgG~lil~~~~-~~~~~~~~l~~l~~ 200 (229)
. .+... ..+++.++.+.|||||+++..+-. ...++...+....+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~ 389 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA 389 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence 1 01111 246899999999999998876643 22333344444444
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=85.81 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------CeEEEcCCCCCCCCCCceeEEEcccchhhh--
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL-- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-- 161 (229)
..+.+|||+|||+|.++..++.. +..+|+++|+++.+ +.++++|+.+... +.+||+|++|.-..+.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINT 141 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCc
Confidence 35679999999999999988776 33599999999873 4488889888653 5689999998211111
Q ss_pred -------------------CHHHHHHHHHhccccCcEEEEEeecCC----cccHHHHHHHHhcCceeE
Q 027039 162 -------------------FPSRFVGEMERTVKIGGVCMVLMEECA----GREIKQIVELFRTSRFVD 206 (229)
Q Consensus 162 -------------------~~~~~l~~~~~~LkpgG~lil~~~~~~----~~~~~~l~~l~~~~~~~~ 206 (229)
...+++......|+|+|.++++.+... .-+..+-..+.+..+|+.
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 024677888899999999888876632 234556666666666653
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-09 Score=93.42 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=68.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC--------------eE--EEcCCCCCCC--CCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LV--SRADPHNLPF--FDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~--------------~~--~~~d~~~~~~--~~~~fD~V~~ 154 (229)
.+++.+|||+|||+|..+..+++. +.++++|+|+++.++ .+ ..+|....++ .+++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 467899999999999999999886 556999999998732 12 4456554443 4678999996
Q ss_pred c------cchhhh-------C----------HHHHHHHHHhccccCcEEEEEeecC
Q 027039 155 A------HLAEAL-------F----------PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 155 ~------~~~~~~-------~----------~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
. .+.+.. . ..+++.++.++|||||.++..+-.-
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 4 111110 1 2578999999999999988766553
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.5e-08 Score=80.25 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCc-eeEEEcccchh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEA-FDVAFTAHLAE 159 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~-fD~V~~~~~~~ 159 (229)
+.+++|||+|.|..+..++-. +..+++-+|...+ .+.++++.+++..- +.. ||+|.+..+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeehccc
Confidence 689999999999999999954 6668999999987 35688888888652 223 99999988777
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh--cCceeEeeeeeecCCeeEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR--TSRFVDAANVTVNGSNMTRIL 221 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~ 221 (229)
...+..-....+|+||.+++.......+...+...... ...+.++..++.+.+...+++
T Consensus 147 ---L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l 207 (215)
T COG0357 147 ---LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHL 207 (215)
T ss_pred ---hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEE
Confidence 77778888899999999775555554555555554444 667888888888877533333
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.3e-09 Score=81.51 Aligned_cols=90 Identities=17% Similarity=0.051 Sum_probs=66.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.+.++.+|||+|||+|.++..+++.+ .+++++|+++. .++++++|+.++++++.+||.|++|--.+
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 45678899999999999999999985 59999999975 35688999999888777899999973222
Q ss_pred hhCHHHHHHHHHhc--cccCcEEEEEee
Q 027039 160 ALFPSRFVGEMERT--VKIGGVCMVLME 185 (229)
Q Consensus 160 ~~~~~~~l~~~~~~--LkpgG~lil~~~ 185 (229)
. ..+.+..+.+. +.++|.+++-..
T Consensus 89 -~-~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 89 -I-STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred -c-HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 1 12334444432 346777665543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=82.33 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=77.4
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCC-CC--CCCCceeEEEcccch
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHN-LP--FFDEAFDVAFTAHLA 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~-~~--~~~~~fD~V~~~~~~ 158 (229)
..+||||||.|.+...+|.. +...++|+|+... .+.++++|+.. +. ++++++|-|+.++-.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999988 7779999999976 45588999888 32 567999999987321
Q ss_pred h-----h----hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc--CceeEe
Q 027039 159 E-----A----LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT--SRFVDA 207 (229)
Q Consensus 159 ~-----~----~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~--~~~~~~ 207 (229)
- | +.-.+++..+++.|+|||.+.+.++. ..-.....+.+.. ..|..+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhcCcCeEEc
Confidence 1 1 12378999999999999998877775 3334445566665 244444
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=90.37 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCC--CCCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLP--FFDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~--~~~~~fD~V~~ 154 (229)
.+++.+|||+|||+|..+..+++. +.++|+++|+++.+ +.++++|+.+.+ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 367889999999999999999876 45699999999762 458888987753 33 78999997
Q ss_pred ccc-------hh------hhC----------HHHHHHHHHhccccCcEEEEEeec
Q 027039 155 AHL-------AE------ALF----------PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~~~-------~~------~~~----------~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.- .+ ... ..+++.++.+.|||||.++..+-.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 511 00 001 145789999999999998755433
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=78.94 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCC----C-CCCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPH----N-LPFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~----~-~~~~~~~fD~V 152 (229)
..+..+||+|||+|..+..++.. +.+.++|+|.|+. ++.+++-+.+ . .+..++++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 35568999999999999999877 7779999999987 3345533332 2 33557899999
Q ss_pred Ecc--cchhhh----C---------------------HHHHHHHHHhccccCcEEEEEeecC
Q 027039 153 FTA--HLAEAL----F---------------------PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 153 ~~~--~~~~~~----~---------------------~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
++| ++..-- . ...++.-+.|.|+|||++.+.+.+.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 999 221100 0 1245677889999999999888753
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-08 Score=81.60 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCChhhHHHH----h---C--C-CCeEEEecCCCC----------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFN----S---I--G-VADVTGVELMDS---------------------------------- 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~----~---~--g-~~~v~~vD~s~~---------------------------------- 130 (229)
....+|+..||++|..+-.+| + . + .-+++|+|+++.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 366899999999997655543 3 1 2 238999999986
Q ss_pred ---------CCeEEEcCCCCCCCCCCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeec
Q 027039 131 ---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 131 ---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++.|.+.|..+.+...+.||+|+|.++.-++++ .++++.+++.|+|||.+++-..+
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 334778888773345689999999998888854 67999999999999998865554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=79.25 Aligned_cols=53 Identities=26% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCeEEEcCCCCCCCCCCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 131 LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 131 ~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.++++++|+.++|+++++||+|++....++. ++.+++++++|+|||||.+++.
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 3679999999999999999999998877776 8999999999999999998755
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.2e-08 Score=91.06 Aligned_cols=110 Identities=22% Similarity=0.260 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCC-CCeEEEecCCCCC----------------------CeEEEcCCCC-CCCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSL----------------------PLVSRADPHN-LPFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~~----------------------~~~~~~d~~~-~~~~~~~fD 150 (229)
+++.+|||||||+|..+..+.+.+ ..+++++|+++++ ++++.+|..+ +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 567899999999999999998874 3699999998762 2355566554 222357899
Q ss_pred EEEcccchh------hhCHHHHHHHHHhccccCcEEEEEeecC--CcccHHHHHHHHhcCce
Q 027039 151 VAFTAHLAE------ALFPSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSRF 204 (229)
Q Consensus 151 ~V~~~~~~~------~~~~~~~l~~~~~~LkpgG~lil~~~~~--~~~~~~~l~~l~~~~~~ 204 (229)
+|+++.... ++...++++.+.+.|||||.+++..... ......++.+.+++.+|
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 999973221 2244679999999999999988655322 22334456666667666
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-08 Score=88.02 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------------CeEEEcCCCCCC--C--CCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLP--F--FDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~--~--~~~~fD~V~ 153 (229)
.++.+|||+|||+|.++...+..|..+|+++|+++.+ +.++++|+.+.- + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5688999999999999988776677799999999761 347788876631 1 246899999
Q ss_pred cc--cchh-------hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHH
Q 027039 154 TA--HLAE-------AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (229)
Q Consensus 154 ~~--~~~~-------~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~ 199 (229)
++ ++.. .. ...+++..+.+.|+|||.++++. +....+.+.+.+..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s-cs~~~~~~~f~~~v 353 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS-CSGLMTSDLFQKII 353 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe-CCCcCCHHHHHHHH
Confidence 98 2111 11 23556677889999999988443 44444545555443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-08 Score=84.35 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------------------CeEEEcCCCCCC----CC-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------------------PLVSRADPHNLP----FF- 145 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------------------~~~~~~d~~~~~----~~- 145 (229)
++.+|||+|||-|....-....+...++|+|++... ..++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 889999999999988888877788899999999762 126777765421 23
Q ss_pred -CCceeEEEcccchhhh--C---HHHHHHHHHhccccCcEEEEEeec
Q 027039 146 -DEAFDVAFTAHLAEAL--F---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 -~~~fD~V~~~~~~~~~--~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..+||+|-|-...|+. . ...+++++...|||||.++..+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 3599999997555544 2 366999999999999999977775
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-08 Score=80.05 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=71.7
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
...+.+..+|+|||+|+|.++.++++. |..+++..|.... .++++.+|+. -+++. +|+++..++.|..
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhc
Confidence 344567789999999999999999988 7779999998532 5779999998 55554 9999999988877
Q ss_pred CH---HHHHHHHHhccccC--cEEEEEe
Q 027039 162 FP---SRFVGEMERTVKIG--GVCMVLM 184 (229)
Q Consensus 162 ~~---~~~l~~~~~~Lkpg--G~lil~~ 184 (229)
.+ .++++++++.|+|| |+++|+=
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 43 67899999999999 9988653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-08 Score=96.13 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=77.8
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------------------CeEEEcCCCCCCC
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------------------PLVSRADPHNLPF 144 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------------------~~~~~~d~~~~~~ 144 (229)
+.+|||+|||+|..+..++.. +..+++|+|+|+.+ +.++++|..+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 568999999999999999987 55699999999761 3567777765321
Q ss_pred C-CCceeEEEcc--cchh--------------------------hhC-----------HHHHHHHHHhccccCcEEEEEe
Q 027039 145 F-DEAFDVAFTA--HLAE--------------------------ALF-----------PSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 145 ~-~~~fD~V~~~--~~~~--------------------------~~~-----------~~~~l~~~~~~LkpgG~lil~~ 184 (229)
. ..+||+|++| ++.. .++ ..+++.++.+.|||||.+++-+
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 2379999999 2210 001 1567788889999999988888
Q ss_pred ecCCcccHHHHH-HHHhcCceeEeee
Q 027039 185 EECAGREIKQIV-ELFRTSRFVDAAN 209 (229)
Q Consensus 185 ~~~~~~~~~~l~-~l~~~~~~~~~~~ 209 (229)
+... -+.+. ++|...+|..+..
T Consensus 279 G~~q---~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 279 GGRP---GQAVCERLFERRGFRITKL 301 (1082)
T ss_pred CccH---HHHHHHHHHHHCCCCeeEE
Confidence 7644 34566 5777655544433
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-08 Score=82.52 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhC----CCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcc--cc--
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI----GVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTA--HL-- 157 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~----g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~--~~-- 157 (229)
.+.+|||+|||+|.++..++.. +..+|+++|+++. ...++++|+...++ +++||+|++| +.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 4679999999999999998764 3458999999987 34588899887665 5799999999 11
Q ss_pred ------hhh---hCHHHHHHHHHhccccCcE
Q 027039 158 ------AEA---LFPSRFVGEMERTVKIGGV 179 (229)
Q Consensus 158 ------~~~---~~~~~~l~~~~~~LkpgG~ 179 (229)
..+ .....+++.+.+++++|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 111 1246688888886666665
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.9e-08 Score=81.71 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe-------------------EEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~-------------------~~~~d~~~-~~~~~~~fD~V~ 153 (229)
+.+.+||+||||+|..+..+.+. +..+++++|+++..++ ++.+|..+ +.-.+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34569999999999999888877 4678999999977322 33444332 111246899999
Q ss_pred cccchh-----hhCHHHHHHHHHhccccCcEEEEEee
Q 027039 154 TAHLAE-----ALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 154 ~~~~~~-----~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+..... .+...++++.+.+.|+|||.+++...
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 864311 12246889999999999999886643
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-07 Score=73.84 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=79.0
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----CCeEEEcCCCCCC--------CCCCceeEEEccc-
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAH- 156 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~- 156 (229)
..++++..|+|+|+-+|.+++.+++. + ...|+|+|+.|. .+.++++|+++-+ +....+|+|+|..
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 45689999999999999999999988 3 346999999986 4669999998754 3345679999761
Q ss_pred --------chhhh--CH-HHHHHHHHhccccCcEEEEEeecCCcc--cHHHHHHHHhcCceeEeee
Q 027039 157 --------LAEAL--FP-SRFVGEMERTVKIGGVCMVLMEECAGR--EIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 157 --------~~~~~--~~-~~~l~~~~~~LkpgG~lil~~~~~~~~--~~~~l~~l~~~~~~~~~~~ 209 (229)
+.+.. .. ..++.-+..+|+|||.+++-+-..+.+ -...+...|+.....+...
T Consensus 121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~a 186 (205)
T COG0293 121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKA 186 (205)
T ss_pred CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCcc
Confidence 12211 11 345566667999999987655443322 2333444555444444433
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-08 Score=85.54 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=71.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
..+-.+..|||||||+|.++..-++.|..+|.|+|.|.. .++++++.++++-+|..+.|+|++-.
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 345678999999999999999999999999999999865 46689999998766678999999976
Q ss_pred chhhhCHHH----HHHHHHhccccCcEEE
Q 027039 157 LAEALFPSR----FVGEMERTVKIGGVCM 181 (229)
Q Consensus 157 ~~~~~~~~~----~l~~~~~~LkpgG~li 181 (229)
+...+..+. .+-.=-+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 665553333 3334447899999754
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.7e-08 Score=80.12 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCC-C-----CCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNL-P-----FFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-----~~~~~fD 150 (229)
.++.+|||+|||+|.-+..++.. +.++++++|+++. .++++.+|+.+. + .++++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 57889999999999988888765 4679999999987 245788887663 1 1246899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
+|+...-. .....++..+.+.|||||.+++
T Consensus 147 ~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 147 FAFVDADK--PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCeEEEE
Confidence 99985321 1245788899999999998664
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-08 Score=81.91 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe-------------------EEEc-----------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------VSRA----------------- 137 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~-------------------~~~~----------------- 137 (229)
..+..+|||||-+|..+..+++. |...+.|+||++..++ +..+
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 56788999999999999999998 8889999999976111 0000
Q ss_pred ---CC---------------C-CCCCCCCceeEEEcc------cchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 138 ---DP---------------H-NLPFFDEAFDVAFTA------HLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 138 ---d~---------------~-~~~~~~~~fD~V~~~------~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+ . -+.+....||+|+|- |+.|+- -...+++.+.++|.|||.+++-
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 0 011335689999986 445554 3588999999999999997754
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-07 Score=77.90 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=102.4
Q ss_pred cccCchhHHhhhhhHHHHHHHHHhcc----cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------
Q 027039 67 RLWSSKSWKQQVTSYAHFFKHLQGKS----LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------- 131 (229)
Q Consensus 67 ~~~~~~~w~~~~~~~~~~~~~l~~~~----~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------- 131 (229)
+-|+...-.++...+..++..|...- .-+...+||--|||.|.++..++..|+ .+.|.|.|--|
T Consensus 23 RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~ 101 (270)
T PF07942_consen 23 RDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHC 101 (270)
T ss_pred hhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHccc
Confidence 45766554555556666666654322 124567999999999999999999999 99999998531
Q ss_pred --------------------------------------------CeEEEcCCCCCCCCC---CceeEEEcccchhhh-CH
Q 027039 132 --------------------------------------------PLVSRADPHNLPFFD---EAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 132 --------------------------------------------~~~~~~d~~~~~~~~---~~fD~V~~~~~~~~~-~~ 163 (229)
.....||+.+...++ ++||+|++.++.... +.
T Consensus 102 ~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni 181 (270)
T PF07942_consen 102 SQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENI 181 (270)
T ss_pred CCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHH
Confidence 115566666654444 799999999877777 88
Q ss_pred HHHHHHHHhccccCcEEEEEeec-------C-------CcccHHHHHHHHhcCceeEeeee
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEE-------C-------AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~-------~-------~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
.+.+..|.++|||||. ++.++- . -+-+.+++.++..+.+|.-+.+-
T Consensus 182 ~~Yi~tI~~lLkpgG~-WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 182 IEYIETIEHLLKPGGY-WINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHHHHHHHHhccCCE-EEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 9999999999999995 335432 1 13367889999888777766653
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=81.67 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------CeEEEcCCCCC-C-CCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHNL-P-FFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------~~~~~~d~~~~-~-~~~~~fD~V 152 (229)
.++.+||+||||.|..+..+++. +..+|+.+|+++.. ++++.+|+... . .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 56789999999999999999887 56789999998752 33666775432 1 235689999
Q ss_pred Ecccch-----hhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
++.... .++.-.++++.+.+.|+|||.++...
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 986322 22234689999999999999976543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.9e-08 Score=90.76 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------------CeEEEcCCCCCC-CCCCceeEEEcc-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLP-FFDEAFDVAFTA- 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~-~~~~~fD~V~~~- 155 (229)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+ +.++++|+.+.. -..++||+|+++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4688999999999999999999887689999999772 347788876521 114689999997
Q ss_pred -cch---------hhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 -HLA---------EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 -~~~---------~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+. ... +..+++..+.+.|+|||.+++....
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 221 111 3467888899999999998765543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=73.75 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=67.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-----------------CCeEEEcCCCC-C--C-CCCCcee
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-----------------LPLVSRADPHN-L--P-FFDEAFD 150 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-----------------~~~~~~~d~~~-~--~-~~~~~fD 150 (229)
....+.+|||+|||+|..++.++.. +..+|+.+|.++. .+.+...|..+ . . ....+||
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3467899999999999999999999 6779999998873 11233434333 1 1 2346899
Q ss_pred EEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHH
Q 027039 151 VAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (229)
Q Consensus 151 ~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~ 199 (229)
+|++..+.+.. ....+++-+.+.++|+|.+++..... .....++.+..
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R-~~~~~~F~~~~ 170 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR-RKSEQEFFDRL 170 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S--TGGCHHHHHH
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe-cHHHHHHHHHh
Confidence 99999766655 56888999999999999977666554 23334444443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-08 Score=79.93 Aligned_cols=100 Identities=11% Similarity=0.073 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-------------EEEcCCCCCCCCCCceeEEEcccch-hh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------VSRADPHNLPFFDEAFDVAFTAHLA-EA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-------------~~~~d~~~~~~~~~~fD~V~~~~~~-~~ 160 (229)
+....++|||||-|.....+...+..+++-+|.|..|++ ...+|-+.++|.++++|+|+++--. |.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 456689999999999999999999999999999977433 5678889999999999999998444 44
Q ss_pred hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHH
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIV 196 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~ 196 (229)
.+....+.+++..|||+|.++... .+++...++.
T Consensus 151 NdLPg~m~~ck~~lKPDg~Fiasm--lggdTLyELR 184 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASM--LGGDTLYELR 184 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHH--hccccHHHHH
Confidence 478889999999999999966433 3344444443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.3e-08 Score=84.36 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe----------------------EEEcCCCC-CCCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------------------VSRADPHN-LPFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------------------~~~~d~~~-~~~~~~~fD 150 (229)
..+.+||+||||.|..+..+.+. +..+|+++|+++.+++ ++.+|+.+ +.-.+++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 55679999999999988888877 5679999999988433 33444443 223356899
Q ss_pred EEEcccch------hhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 151 VAFTAHLA------EALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 151 ~V~~~~~~------~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+|++.... ..+.-.++++.+.+.|+|||.+++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99997321 112347899999999999999775543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.7e-07 Score=78.04 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=78.6
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe---------------EEEc-CCCCCCCCCCceeE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------VSRA-DPHNLPFFDEAFDV 151 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~---------------~~~~-d~~~~~~~~~~fD~ 151 (229)
+......++|..|||-=||||.+.++..-.|. .++|.|++..|+. +... |+..+|+.++++|.
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccce
Confidence 34456678999999999999999999988898 9999999987433 3455 99999999889999
Q ss_pred EEccc-----chhh---h--CHHHHHHHHHhccccCcEEEEEee
Q 027039 152 AFTAH-----LAEA---L--FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 152 V~~~~-----~~~~---~--~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
|++.- .... + -..++++.++++||+||++++..+
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99971 1011 1 147889999999999999998887
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=71.08 Aligned_cols=124 Identities=18% Similarity=0.230 Sum_probs=94.3
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCCCCC---CCCceeEEEcccchhhh-CH---HHHHHH
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPF---FDEAFDVAFTAHLAEAL-FP---SRFVGE 169 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~~~~---~~~~fD~V~~~~~~~~~-~~---~~~l~~ 169 (229)
..++|||||=+...... ..+.-+|+.||+++....+.+.|+-+.|. +++.||+|.++-+.... +| .++++.
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r 129 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRR 129 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHH
Confidence 47999999987665443 33445899999999999999999999776 46899999998666555 45 679999
Q ss_pred HHhccccCcE-----EEEEeecCC-----cccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 170 MERTVKIGGV-----CMVLMEECA-----GREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 170 ~~~~LkpgG~-----lil~~~~~~-----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
+++.|+|+|. ++++.+... --+.+.+.++....+|..++.- ...+..-.+|++
T Consensus 130 ~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~--~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 130 AHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK--KSKKLAYWLFRK 192 (219)
T ss_pred HHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE--ecCeEEEEEEee
Confidence 9999999999 988887632 2245678889999999988863 333344444444
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=80.47 Aligned_cols=94 Identities=18% Similarity=0.310 Sum_probs=73.2
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------------------eEEEcCCCC------CCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------------LVSRADPHN------LPFF 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------------------~~~~~d~~~------~~~~ 145 (229)
+.+++..++|+|||-|-...-.-..|.+.++|+|+.+..+ .|+.+|-.. +++.
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3488999999999999998888888899999999998732 377777543 3455
Q ss_pred CCceeEEEcccchhhh-----CHHHHHHHHHhccccCcEEEEEeec
Q 027039 146 DEAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~-----~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.+||+|=|-...|.. ....+++++.+.|||||.++-.++.
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 6669999887544433 2467899999999999998866665
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=79.71 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCChhhHHHH----hC-C----CCeEEEecCCCC-------------------------------------
Q 027039 97 HSKVLCVSAGAGHEVMAFN----SI-G----VADVTGVELMDS------------------------------------- 130 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~----~~-g----~~~v~~vD~s~~------------------------------------- 130 (229)
..+|+..||++|..+-.+| +. + .-+|+|+|+++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999997655544 32 1 237999999976
Q ss_pred ---------CCeEEEcCCCCCCCC-CCceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeec
Q 027039 131 ---------LPLVSRADPHNLPFF-DEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 131 ---------~~~~~~~d~~~~~~~-~~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++.|.+.|+.+.+++ .+.||+|+|.++..+++ ..++++.+++.|+|||.+++-..+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 122566666654433 57899999998887774 378999999999999987655443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=74.10 Aligned_cols=92 Identities=16% Similarity=0.043 Sum_probs=63.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCC-CCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHN-LPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~-~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||+|||+|.++..+...+..+|+++|.++. .+.++.+|+.+ ++...++||+|+++--.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457899999999999999766665679999999876 24477777765 22224579999997321
Q ss_pred hhhCHHHHHHHHHh--ccccCcEEEEEeec
Q 027039 159 EALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (229)
Q Consensus 159 ~~~~~~~~l~~~~~--~LkpgG~lil~~~~ 186 (229)
..-...++++.+.. .++|+|.+++....
T Consensus 132 ~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 21123445555554 47999987755443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.3e-07 Score=81.55 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=76.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCC----CCCCCCceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHN----LPFFDEAFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~----~~~~~~~fD~V~ 153 (229)
...++.+|||+|||+|.++..++..+ .+|+|+|+|+.+ +.++.+|+.+ .++.+++||+|+
T Consensus 294 ~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 294 DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 34678899999999999999999886 499999999873 4588888864 234567899999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEeeeeeec
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAANVTVN 213 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~ 213 (229)
++--... ..+.+..+.+ ++|++.+++.... .---+.+..+.+ ..++.+++-++.+
T Consensus 373 ~dPPr~g--~~~~~~~l~~-~~~~~ivyvSCnp--~tlaRDl~~L~~~gY~l~~i~~~DmF 428 (443)
T PRK13168 373 LDPPRAG--AAEVMQALAK-LGPKRIVYVSCNP--ATLARDAGVLVEAGYRLKRAGMLDMF 428 (443)
T ss_pred ECcCCcC--hHHHHHHHHh-cCCCeEEEEEeCh--HHhhccHHHHhhCCcEEEEEEEeccC
Confidence 8621111 2244555555 6898886655432 111223444433 5677777766553
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.2e-07 Score=74.43 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCChhhHHHH----hC-C-----CCeEEEecCCCC-----------------------------------
Q 027039 96 NHSKVLCVSAGAGHEVMAFN----SI-G-----VADVTGVELMDS----------------------------------- 130 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~----~~-g-----~~~v~~vD~s~~----------------------------------- 130 (229)
...+|+..||++|...-.+| +. + .-+|+|+|++..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47799999999996555543 22 2 248999999976
Q ss_pred ---------CCeEEEcCCCCCCCCCCceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeec
Q 027039 131 ---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 131 ---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++.|.+.|...-++..+.||+|+|.++.-.++ ..+++..++..|+|||.+++-..+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 23366666665443467899999998877774 377999999999999998866655
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.4e-07 Score=72.55 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------------eEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
...+.||.|+|-|..+..+...-+.+|-.+|+.+..+ ++....++++..++++||+|++..+..|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4568999999999999877555477899999887622 2555555665445689999999988888
Q ss_pred h---CHHHHHHHHHhccccCcEEEEEeec---CC-----------cccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 161 L---FPSRFVGEMERTVKIGGVCMVLMEE---CA-----------GREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 161 ~---~~~~~l~~~~~~LkpgG~lil~~~~---~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
+ +..+++++....|+|||.+++= +. .+ ..+...+.++|+++++.-++.-...|.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvK-EN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~f 205 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVK-ENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGF 205 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEE-EEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT-
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEE-ecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCC
Confidence 7 4578999999999999986632 11 11 115778999999999998887665543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.5e-07 Score=74.20 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-----------EEEcCCCCCCC-----CCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLPF-----FDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-----------~~~~d~~~~~~-----~~~~fD~V~~~~~~ 158 (229)
.++.++||+|||+|.++..+++.|..+|+|+|+++.++. +...++..... .-..+|+++++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL-- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence 467899999999999999999998889999999985322 23334443221 113677666532
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
...+..+.+.|+| |.+++.+.
T Consensus 152 -----~~~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 152 -----ISILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred -----HhHHHHHHHHhCc-CeEEEEcC
Confidence 2246778888999 87776653
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.6e-07 Score=76.99 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCC-CCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPF-FDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~~~~~ 159 (229)
++.+|||+|||+|.++..++..+ .+|+|+|+++. .++++++|+.++.. .+++||+|+++--..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 56899999999999999999987 49999999987 24588899877532 345799999872111
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.. ...+++. ...++|++.++ +++...--.+.+..+ ...++.+++-++-
T Consensus 252 G~-~~~~~~~-l~~~~~~~ivy--vsc~p~t~~rd~~~l-~~y~~~~~~~~Dm 299 (315)
T PRK03522 252 GI-GKELCDY-LSQMAPRFILY--SSCNAQTMAKDLAHL-PGYRIERVQLFDM 299 (315)
T ss_pred Cc-cHHHHHH-HHHcCCCeEEE--EECCcccchhHHhhc-cCcEEEEEEEecc
Confidence 11 1222233 33367776544 333222233344444 6677777766655
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=69.79 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCC----CCeEEEcCCCCC------C--CC--CCceeEEEccc---
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----LPLVSRADPHNL------P--FF--DEAFDVAFTAH--- 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~----~~~~~~~d~~~~------~--~~--~~~fD~V~~~~--- 156 (229)
++.++||+||++|.++..+.+.+ .+.|+|+|+.+. ...++++|+.+. . +. .+.||+|+|.-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN 102 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence 45899999999999999999996 579999999977 333445554331 1 11 26999999963
Q ss_pred ch------hhhC---HHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LA------EALF---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~------~~~~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+. +... -...+.-+.+.|||||.+++-+-.
T Consensus 103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 1111 133445566789999987765544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-07 Score=75.01 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCC---CCCCCceeEEEcccch
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNL---PFFDEAFDVAFTAHLA 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~---~~~~~~fD~V~~~~~~ 158 (229)
..+||||||.|.+...+|+. |...++|+|+... .+.++..|+..+ -+++++.|-|+.+.-.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999998 8789999999876 334667777652 2456699999987322
Q ss_pred -----hhh----CHHHHHHHHHhccccCcEEEEEeec
Q 027039 159 -----EAL----FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 159 -----~~~----~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.|. ....+++.+.+.|||||.+.+.++.
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 111 2378999999999999999888775
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.1e-07 Score=72.46 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCC-CC-----CCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHN-LP-----FFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~-~~-----~~~~~fD 150 (229)
....+||||||+.|+-+..+++. ..++++.+|+++. .++++.+|+.+ ++ -..++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 47789999999999999999976 3579999999986 35588888765 22 1136899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
+||..+-- ......+..+.+.|+|||.+++
T Consensus 124 ~VFiDa~K--~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 124 FVFIDADK--RNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEEESTG--GGHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcccc--cchhhHHHHHhhhccCCeEEEE
Confidence 99986421 2456778888899999999653
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.7e-07 Score=75.29 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCC-CC-C----CCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHN-LP-F----FDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~-~~-~----~~~~fD 150 (229)
.+..+|||||+++|..+..++.. +.++++++|.+++ .++++.+|+.+ ++ + .+++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 56889999999999999999875 3568999999986 34577888765 22 1 136899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
+||...-- ......++.+.+.|+|||.+++
T Consensus 197 ~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 197 FAFVDADK--RMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCcEEEE
Confidence 99985321 2357788888999999999663
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-07 Score=75.13 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=51.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+.++.+|||||||+|..+..+++.+. +++++|+++. .+.++++|+.+++++ .||.|++|
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSN 98 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEc
Confidence 456889999999999999999999954 9999999965 355888999888764 48999997
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.4e-07 Score=76.35 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=51.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+.++.+|||||||+|.++..+++.+. +|+|+|+++.+ ++++++|+.++++++-.+|.|++|
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 457888999999999999999999965 99999999872 458899999887654335888887
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.3e-07 Score=71.15 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-C--CCeEEEecCCCC-------------------------C
Q 027039 80 SYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G--VADVTGVELMDS-------------------------L 131 (229)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g--~~~v~~vD~s~~-------------------------~ 131 (229)
.++..+..|.+ .++||.+.||+|+|+|+++..++.. + .....|+|.-++ .
T Consensus 68 mha~~le~L~~--~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 68 MHATALEYLDD--HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHH--hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 34455544421 2489999999999999999888855 2 224588887665 2
Q ss_pred CeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 132 PLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 132 ~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.++.+|....--+..+||.|++..- ..+.-+++...|+|||++++.+.+
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAa-----a~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAA-----ASELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccC-----ccccHHHHHHhhccCCeEEEeecc
Confidence 33788898887667889999998621 234557788889999999888775
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.7e-06 Score=65.27 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=79.1
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----CCeEEEc-CCCCC--------CCCCCceeEEEcc
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRA-DPHNL--------PFFDEAFDVAFTA 155 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----~~~~~~~-d~~~~--------~~~~~~fD~V~~~ 155 (229)
.+.++|+.+|||+||.+|.+++...++ +.+-|.|+|+..- ...++.+ |+.+. .+++...|+|++.
T Consensus 64 y~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 64 YRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred ccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 356799999999999999999988887 7889999998754 2335555 66553 2467899999996
Q ss_pred c--------chhhh---CH-HHHHHHHHhccccCcEEEEEeecCCcc--cHHHHHHHHhcCceeEee
Q 027039 156 H--------LAEAL---FP-SRFVGEMERTVKIGGVCMVLMEECAGR--EIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 156 ~--------~~~~~---~~-~~~l~~~~~~LkpgG~lil~~~~~~~~--~~~~l~~l~~~~~~~~~~ 208 (229)
- ...|. +. .+++.-....++|+|.+++=+-..++. -.+.+.+.|.+.+.++..
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~ 210 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPD 210 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEeeCCc
Confidence 1 11222 11 344555667789999988655543322 234455666665555544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.5e-06 Score=71.61 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-----------------CeEE-EcCCCCCC----CCCCceeEE
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-----------------PLVS-RADPHNLP----FFDEAFDVA 152 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-----------------~~~~-~~d~~~~~----~~~~~fD~V 152 (229)
.+.++||||||+|.....++.. ...+++|+|+++.. +.+. +.|..++. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 5689999999999887777665 44599999999762 1222 22322221 235789999
Q ss_pred Ecc--cchhhhC----H------------------------------------HHHHHHHHhccccCcEEEEEeecCCcc
Q 027039 153 FTA--HLAEALF----P------------------------------------SRFVGEMERTVKIGGVCMVLMEECAGR 190 (229)
Q Consensus 153 ~~~--~~~~~~~----~------------------------------------~~~l~~~~~~LkpgG~lil~~~~~~~~ 190 (229)
+|| +...... . ..++.+.....+..|.+..+++. ..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~k--k~ 271 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSK--KE 271 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeec--cC
Confidence 999 1111000 0 11223333333344443333443 44
Q ss_pred cHHHHHHHHhcCceeEeeeee-ecCCeeEEEEE
Q 027039 191 EIKQIVELFRTSRFVDAANVT-VNGSNMTRILM 222 (229)
Q Consensus 191 ~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 222 (229)
+..++.+.+++.+...+..++ ..|.+.+.++.
T Consensus 272 ~l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~va 304 (321)
T PRK11727 272 NLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIA 304 (321)
T ss_pred CHHHHHHHHHHcCCceEEEEEEeCCCeeeEEEE
Confidence 788888888888887666664 46776666653
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=68.63 Aligned_cols=111 Identities=16% Similarity=0.215 Sum_probs=71.3
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC--CCC--------eEEEecCCCC----------------CCeEEEcCCCCCC
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVA--------DVTGVELMDS----------------LPLVSRADPHNLP 143 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~--------~v~~vD~s~~----------------~~~~~~~d~~~~~ 143 (229)
.....+++..+||--||+|.+.++.+.. ... +++|.|+++. .+.+.+.|+.+++
T Consensus 22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 3345678999999999999999887765 232 2889999987 3458889999999
Q ss_pred CCCCceeEEEcc--c---chh--hh--CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 144 FFDEAFDVAFTA--H---LAE--AL--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 144 ~~~~~fD~V~~~--~---~~~--~~--~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
+.++++|.|+++ + +.. .. ...++++++.+++++ ..+++.... . .+.+.++...+.+.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~---~---~~~~~~~~~~~~~~ 167 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN---R---ELEKALGLKGWRKR 167 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC---C---CHHHHHTSTTSEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC---H---HHHHHhcchhhceE
Confidence 878999999998 1 111 11 235678999999999 444433332 1 24455554444333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=78.18 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCeEEEEcCCCChhhHHHHhCC-----CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIG-----VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g-----~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
+..|+|||||+|.++...++.+ ..+|+|+|.++. .+.++++|++++..+ .++|+|||=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987665443 469999999875 456999999998764 499999995
Q ss_pred cchhhh---CHHHHHHHHHhccccCcEEE
Q 027039 156 HLAEAL---FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 156 ~~~~~~---~~~~~l~~~~~~LkpgG~li 181 (229)
-+.... -..+.+....|.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 222111 23467888899999999754
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=74.94 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
-.+..|||+|||+|.++...+..|..+|++++.|+- .+.++.|.++++.++ ++.|+|++--+..
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 357789999999999999999999999999998864 455888999998764 6899999975555
Q ss_pred hhCHHHHH---HHHHhccccCcEEEEEe
Q 027039 160 ALFPSRFV---GEMERTVKIGGVCMVLM 184 (229)
Q Consensus 160 ~~~~~~~l---~~~~~~LkpgG~lil~~ 184 (229)
.+.-++++ -.+.+.|||+|.++=.+
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 44333333 34568999999976433
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7e-06 Score=64.48 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc--cc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA--HL 157 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~--~~ 157 (229)
...-++|||||+|..+..|++. |...+.++|+++. .++.++.|..+- ...++.|+++-| ++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 3678999999999999999887 5668999999987 345777777652 224889998887 11
Q ss_pred h--------------hh--hC----HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 158 A--------------EA--LF----PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 158 ~--------------~~--~~----~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
. +. .+ ..+++.++-..|.|.|.+++++-. .+..+++....+.-++....-.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~--~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR--ANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh--hcCHHHHHHHHhhcccceeEEE
Confidence 1 11 11 245667777889999999988776 5667788887776655544443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=70.45 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC----------------CeEEE-cCCCCC-C-CCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSR-ADPHNL-P-FFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~----------------~~~~~-~d~~~~-~-~~~~~fD~V~ 153 (229)
....+|||||++.|+-+..++.. + .++++++|++++. +..+. +|..+. . ...++||+||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 68899999999999999999987 5 7799999999882 33555 465442 1 4568999999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
..+- -.+..++++.+.+.|+|||.+++
T Consensus 138 IDad--K~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 138 IDAD--KADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EeCC--hhhCHHHHHHHHHHhCCCcEEEE
Confidence 8421 11357789999999999999664
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=77.65 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=61.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCC----CCCCCceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNL----PFFDEAFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~----~~~~~~fD~V~ 153 (229)
..+++.+|||+|||+|.++..++... .+|+|+|+++.+ +.++.+|+.+. ++.+++||+|+
T Consensus 289 ~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 289 ELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred ccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 34677899999999999999999875 499999999872 45888888652 23456799999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
.+--... -..++++.+.+ ++|++.+++
T Consensus 368 ~dPPr~G-~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 368 LDPPRKG-CAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred ECcCCCC-CCHHHHHHHHh-cCCCEEEEE
Confidence 7521111 12445555544 789886554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.3e-05 Score=67.81 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=83.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhhCHH
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~ 164 (229)
.+.++.++||+||++|.++..+.++|. .|+|+|..+- .+...++|......+.+.+|.++|.-+.. |.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P~ 283 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---PA 283 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---HH
Confidence 457899999999999999999999987 9999997754 23455555544322267899999965555 88
Q ss_pred HHHHHHHhccccC--cEEEEEeecCCcccHHH-------HHHHHhcCce---eEeeeeeecCCeeEEEE
Q 027039 165 RFVGEMERTVKIG--GVCMVLMEECAGREIKQ-------IVELFRTSRF---VDAANVTVNGSNMTRIL 221 (229)
Q Consensus 165 ~~l~~~~~~Lkpg--G~lil~~~~~~~~~~~~-------l~~l~~~~~~---~~~~~~~~~~~~~~~~~ 221 (229)
+..+-+.+.+..| ...++...-......++ +.+.+.+.+. +.++.+-.+-...++++
T Consensus 284 rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khLyHdReEiTv~~ 352 (357)
T PRK11760 284 RVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQLYHDREEVTVHL 352 (357)
T ss_pred HHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeeeecCCceEEEEE
Confidence 8888888888776 35555555433332222 2233333332 35555555555555555
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=65.34 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=61.3
Q ss_pred CCCCeEEEEcCCCCh-hhHHHHhCCCCeEEEecCCCCC--------CeEEEcCCCCCCCC-CCceeEEEcccchhhhCHH
Q 027039 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDSL--------PLVSRADPHNLPFF-DEAFDVAFTAHLAEALFPS 164 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~-~~~~l~~~g~~~v~~vD~s~~~--------~~~~~~d~~~~~~~-~~~fD~V~~~~~~~~~~~~ 164 (229)
..+.++||||||+|. .+..|++.|+ +|+++|+++.. ..++.+|..+..+. -..+|+|.+..- |.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~ 88 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PR 88 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CH
Confidence 356899999999996 8889998887 99999999984 45889999886543 468999998432 34
Q ss_pred HHHHHHHhcccc-CcEEEEEeecCC
Q 027039 165 RFVGEMERTVKI-GGVCMVLMEECA 188 (229)
Q Consensus 165 ~~l~~~~~~Lkp-gG~lil~~~~~~ 188 (229)
++..-+.++-|. |.-++ +.+-.+
T Consensus 89 el~~~~~~la~~~~~~~~-i~~l~~ 112 (134)
T PRK04148 89 DLQPFILELAKKINVPLI-IKPLSG 112 (134)
T ss_pred HHHHHHHHHHHHcCCCEE-EEcCCC
Confidence 444445554444 33333 444433
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.2e-06 Score=67.04 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=87.5
Q ss_pred hHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC-------------CCeEEEc
Q 027039 73 SWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS-------------LPLVSRA 137 (229)
Q Consensus 73 ~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~-------------~~~~~~~ 137 (229)
.|.....-+...+-.=+..-.+++|++||.+|+.+|.....++.. | .+.|+|++.++. .+--+..
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~ 129 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE 129 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec
Confidence 365444433333222223346789999999999999999999988 4 789999999985 3335677
Q ss_pred CCCCCC---CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCc----c---cHHHHHHHHhcCceeEe
Q 027039 138 DPHNLP---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAG----R---EIKQIVELFRTSRFVDA 207 (229)
Q Consensus 138 d~~~~~---~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~----~---~~~~l~~l~~~~~~~~~ 207 (229)
|+.... ..-+.+|+|++. +...-...-++.++...||+||.+++.+..... . .+.+-.+.++..+|.-.
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~D-VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQD-VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE--SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred cCCChHHhhcccccccEEEec-CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 877521 123589999984 333222355678888999999999988865221 1 23333344555555555
Q ss_pred eeeee--cCCeeEEEEEEe
Q 027039 208 ANVTV--NGSNMTRILMRR 224 (229)
Q Consensus 208 ~~~~~--~~~~~~~~~~~~ 224 (229)
+.+++ +..+--.++.+.
T Consensus 209 e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 209 EQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp EEEE-TTTSTTEEEEEEEE
T ss_pred eEeccCCCCCCcEEEEEEe
Confidence 55544 444434444443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.4e-07 Score=78.16 Aligned_cols=89 Identities=26% Similarity=0.235 Sum_probs=77.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
...++++++|+|||.|.....++......++|+|.++. .-.++.+|.-+-||+++.||.+.+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34788899999999999999999886559999999876 12267788888999999999999997
Q ss_pred chhhh-CHHHHHHHHHhccccCcEEE
Q 027039 157 LAEAL-FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~LkpgG~li 181 (229)
...|. ++..+++|+.+++||||.++
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEE
Confidence 77777 99999999999999999976
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-06 Score=69.59 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------CeEEEcCCCCCCCCCCcee---EEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFD---VAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD---~V~~~ 155 (229)
...++.+|||||||+|.++..+++.+. .++++|+++.+ +.++++|+.+.+++ .+| .|++|
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 456789999999999999999999964 79999998772 45788899888764 566 77775
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=74.63 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC-------------------eEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~-------------------~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
....+||.||+|.|..+..+.+. +..+++.+|+++..+ +++.+|+.+ +...+++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999988876 567899999998722 255555554 233357899999
Q ss_pred cccch-------hhhCHHHHHH-HHHhccccCcEEEEEee
Q 027039 154 TAHLA-------EALFPSRFVG-EMERTVKIGGVCMVLME 185 (229)
Q Consensus 154 ~~~~~-------~~~~~~~~l~-~~~~~LkpgG~lil~~~ 185 (229)
+.... .++.-.++++ .+.+.|+|||.+++...
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 86322 2234567888 89999999999776543
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.1e-06 Score=74.88 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCC-CCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLP-FFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~ 154 (229)
..+++.+|||++||+|.-+..+++. +.+.+++.|+++. .+.+...|...++ ...+.||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 3478999999999999999999887 4569999999987 2335666776543 23467999995
Q ss_pred c----c--ch-------hhh----------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 155 A----H--LA-------EAL----------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~----~--~~-------~~~----------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
. . +. +.. -..+++..+.+.|||||+++-.+-.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 4 1 10 000 1156889999999999997544433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=79.75 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCC--CCCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNL--PFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~ 156 (229)
..+..+||||||.|.+...+|.. +...++|+|+... .+.++..|+..+ -++++++|-|+.++
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 45678999999999999999998 7779999999876 223555565432 26788999999973
Q ss_pred chhh-----h----CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 157 LAEA-----L----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 157 ~~~~-----~----~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
-.-+ . .-.++++.+++.|||||.+.+.++. ..-.....+.+....
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~--~~y~~~~~~~~~~~~ 479 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI--ENYFYEAIELIQQNG 479 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC--HHHHHHHHHHHHhCC
Confidence 2211 1 2378999999999999998877775 222233345555443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-06 Score=68.95 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=50.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
-.+..|+|+|||+|.++...+-.|...|+|+|++++ .++|..+|+.+. .+.+|.+++|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence 467889999999999999999998779999999987 355888888886 4688999998
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.1e-06 Score=63.99 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=75.1
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCC----------CCeEEEcCCCCCC-----CCCCce
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS----------LPLVSRADPHNLP-----FFDEAF 149 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~----------~~~~~~~d~~~~~-----~~~~~f 149 (229)
.+...-....+..|||+|.|+|.++.++.+.| ..+++++|.++. ...++.+|+.++. +.+..|
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCee
Confidence 33334445678899999999999999999884 358999999987 4558889887764 557789
Q ss_pred eEEEcccchhhh---CHHHHHHHHHhccccCcEEEEEeec
Q 027039 150 DVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 150 D~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|.|+|.--...+ .-.++++++...|.+||.++-.+..
T Consensus 119 D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 999996211111 2367889999999999998855544
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.1e-06 Score=73.05 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=71.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCC-CCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPF-FDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~-~~~~fD~V~~~~~~~ 159 (229)
++.+|||++||+|.++..++..+ .+|+|+|+++.+ ++++.+|+.+... ..++||+|+++--..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 56799999999999999999876 499999999872 4488888765321 124699999872111
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.. ..++++.+. .++|++.+++.... .---+.+..+ ...++.++.-++-
T Consensus 312 G~-~~~~l~~l~-~~~p~~ivyvsc~p--~TlaRDl~~L-~gy~l~~~~~~Dm 359 (374)
T TIGR02085 312 GI-GKELCDYLS-QMAPKFILYSSCNA--QTMAKDIAEL-SGYQIERVQLFDM 359 (374)
T ss_pred CC-cHHHHHHHH-hcCCCeEEEEEeCH--HHHHHHHHHh-cCceEEEEEEecc
Confidence 11 234445554 47898875544332 2223335555 5566666655544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-05 Score=63.84 Aligned_cols=90 Identities=14% Similarity=-0.081 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCC-C-C-CC-CceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNL-P-F-FD-EAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~-~~-~~fD~V~~~ 155 (229)
.+.++||++||+|.++.+++.+|...|+++|.++. .++++.+|+.+. . + .. ..||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 67899999999999999999998779999999976 134777787442 1 1 12 247888886
Q ss_pred cchhhhCHHHHHHHHH--hccccCcEEEEEee
Q 027039 156 HLAEALFPSRFVGEME--RTVKIGGVCMVLME 185 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~--~~LkpgG~lil~~~ 185 (229)
--.......+++..+. .+|+++|.+++-..
T Consensus 129 PPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2111112344444443 46888998664443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.5e-06 Score=68.52 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=90.7
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCCCCC--CCceeE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLPFF--DEAFDV 151 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~--~~~fD~ 151 (229)
..++||++|+|-|+|+|..+.+++.. +.+++...|.-.. .+.+.+-|+....|. +..+|.
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccce
Confidence 36799999999999999999999887 6789999998654 455888888876654 578999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecC
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
|+. .+ ..|..++--+...||.+|.-++.++.+- +..+.-++....++|.++.-++...
T Consensus 181 VFL-Dl---PaPw~AiPha~~~lk~~g~r~csFSPCI-EQvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 181 VFL-DL---PAPWEAIPHAAKILKDEGGRLCSFSPCI-EQVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred EEE-cC---CChhhhhhhhHHHhhhcCceEEeccHHH-HHHHHHHHHHHhCCCceEEEEEeeh
Confidence 987 22 2488888888889999874444555444 3455777888899999988766544
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-06 Score=69.71 Aligned_cols=89 Identities=28% Similarity=0.335 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------CC-eEEEcCCCCCCCCCCceeEEEcccchhhhC---
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LP-LVSRADPHNLPFFDEAFDVAFTAHLAEALF--- 162 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------~~-~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~--- 162 (229)
..++.++|+|||.|-... ..+..-++|.|++.. .. ....+|+..+|+.+.+||.+++..+.||+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 668999999999997542 223346888888765 23 477889999999999999999999888883
Q ss_pred -HHHHHHHHHhccccCcEEEEEeec
Q 027039 163 -PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 163 -~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
-.++++++.|.+||||...+.+-.
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeh
Confidence 367999999999999987666543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-05 Score=70.42 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=86.3
Q ss_pred hhHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCC
Q 027039 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHN 141 (229)
Q Consensus 72 ~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~ 141 (229)
..|+..+..|..++...+ ....-..|+|+.+|.|.++.+|.+.+..-+..+=.... .+-..+.--+.
T Consensus 344 ~~Wk~~V~~Y~~l~~~~i---~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~ 420 (506)
T PF03141_consen 344 KHWKKRVSHYKKLLGLAI---KWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEA 420 (506)
T ss_pred HHHHHHHHHHHHhhcccc---cccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhc
Confidence 457777776665554111 11233579999999999999999887533333222111 11122222233
Q ss_pred CCCCCCceeEEEcccchhhh----CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 142 LPFFDEAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 142 ~~~~~~~fD~V~~~~~~~~~----~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
.+.-+.+||+|+++++.... ....++-||-|+|+|||.+++ -+. .+-..++..+.+.-+......-+.+|+.
T Consensus 421 fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii-RD~--~~vl~~v~~i~~~lrW~~~~~d~e~g~~ 496 (506)
T PF03141_consen 421 FSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII-RDT--VDVLEKVKKIAKSLRWEVRIHDTEDGPD 496 (506)
T ss_pred cCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE-ecc--HHHHHHHHHHHHhCcceEEEEecCCCCC
Confidence 55557999999999766544 458899999999999999662 232 4456677777775555444333344443
|
; GO: 0008168 methyltransferase activity |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4e-06 Score=71.76 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=52.0
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
+.....+.++.+|||||||+|.++..+++.+. +++++|+++. .++++++|+.+.++ ..||.
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~ 104 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDV 104 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCE
Confidence 33334557889999999999999999998854 8999999965 24588888877654 46899
Q ss_pred EEcc
Q 027039 152 AFTA 155 (229)
Q Consensus 152 V~~~ 155 (229)
|++|
T Consensus 105 VvaN 108 (294)
T PTZ00338 105 CVAN 108 (294)
T ss_pred EEec
Confidence 9987
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.6e-05 Score=71.22 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=74.7
Q ss_pred CCCC-eEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHS-KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~-~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
++.. ++|-+|||.-.+...+.+.|+.+|+.+|+|+.. ..+...|...+.|++++||+|+.-...+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 5556 999999999999999999999999999999862 3388899999999999999999864333
Q ss_pred hh-----------CHHHHHHHHHhccccCcEEEEEee
Q 027039 160 AL-----------FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 160 ~~-----------~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++ .....+.+++++++|||+.+.++-
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 33 124567899999999999876655
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.4e-06 Score=68.36 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCC-C-C-----CCCce
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNL-P-F-----FDEAF 149 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~f 149 (229)
.+..+|||||++.|.-+..++.. +.++++++|.++. .++++.+++.+. + + ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 46779999999999999999875 4569999999986 355788877652 2 1 13689
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
|+|+..+- .......+..+.+.|+|||.+++
T Consensus 158 D~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 158 DFIFVDAD--KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cEEEecCC--HHHhHHHHHHHHHhcCCCeEEEE
Confidence 99998532 11345677778899999999653
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-06 Score=69.32 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=54.5
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC------------------------CCeEEEcCCCCCCCCC
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------------------------LPLVSRADPHNLPFFD 146 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~------------------------~~~~~~~d~~~~~~~~ 146 (229)
..++++...+|+|||.|......+.. ++.+.+|+|+.+. .+++.++|+.+.++.+
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 35688999999999999998887766 8878999999976 2236677776643211
Q ss_pred ---CceeEEEcccchhhhCHHHHHHHHHhccccCcEEE
Q 027039 147 ---EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 147 ---~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~li 181 (229)
...|+|++|++.-..+....+.+....||+|-+++
T Consensus 118 ~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 118 DIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred hhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence 35799999876442233445677778889998865
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.4e-05 Score=66.96 Aligned_cols=120 Identities=14% Similarity=0.054 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.+|..|+|+=||-|.+++.++..|...|+++|++|. .+..+++|....+..-+.+|-|+++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 779999999999999999999998766999999987 2458899999987655899999998655
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeecCCcc----cHHHHHHHHhc----CceeEeeeeeecCCee
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGR----EIKQIVELFRT----SRFVDAANVTVNGSNM 217 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~----~~~~l~~l~~~----~~~~~~~~~~~~~~~~ 217 (229)
. ..+++..+.+.+|+||.+-...-..... ..+.+.+..++ ......+.++.+...+
T Consensus 267 ~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v 330 (341)
T COG2520 267 S---AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGV 330 (341)
T ss_pred c---chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCe
Confidence 4 4567777888888999866444333222 23445555443 3355556666655543
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-05 Score=66.72 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC------------------------------------------
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP------------------------------------------ 132 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~------------------------------------------ 132 (229)
.+.++||||||+-... .+... -+.+++..|..+...
T Consensus 56 ~g~~llDiGsGPtiy~-~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ-LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GG-GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh-hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 5778999999996553 33332 466899999987611
Q ss_pred --eEEEcCCCCCC-CCC-----CceeEEEcccchhhh--CH---HHHHHHHHhccccCcEEEEEeecCC-----------
Q 027039 133 --LVSRADPHNLP-FFD-----EAFDVAFTAHLAEAL--FP---SRFVGEMERTVKIGGVCMVLMEECA----------- 188 (229)
Q Consensus 133 --~~~~~d~~~~~-~~~-----~~fD~V~~~~~~~~~--~~---~~~l~~~~~~LkpgG~lil~~~~~~----------- 188 (229)
.++.+|+++.+ +.. .+||+|++....+.. +. ..+++++.++|||||.+++......
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 17788998743 332 359999998766655 43 6788999999999999997743321
Q ss_pred --cccHHHHHHHHhcCcee
Q 027039 189 --GREIKQIVELFRTSRFV 205 (229)
Q Consensus 189 --~~~~~~l~~l~~~~~~~ 205 (229)
..+.+.+.+.+.+.++.
T Consensus 215 ~l~l~ee~v~~al~~aG~~ 233 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFD 233 (256)
T ss_dssp ---B-HHHHHHHHHHTTEE
T ss_pred cccCCHHHHHHHHHHcCCE
Confidence 12456677788888873
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-06 Score=68.17 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+++.+|+|+-||-|.++..++.. ....|+++|++|. .+..+++|..+... ++.||.|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 488999999999999999999983 3458999999987 34578999988754 78999999975
Q ss_pred chhhhCHHHHHHHHHhccccCcEE
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVC 180 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~l 180 (229)
... -.+++..+.+.+|+||.+
T Consensus 178 p~~---~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 PES---SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TSS---GGGGHHHHHHHEEEEEEE
T ss_pred hHH---HHHHHHHHHHHhcCCcEE
Confidence 433 235677788999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.4e-06 Score=72.63 Aligned_cols=85 Identities=25% Similarity=0.282 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
+.+|||++||+|..++.++.. +..+|+++|+++.. ..+..+|+..+....++||+|+.+-..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~G-- 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFG-- 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCC--
Confidence 568999999999999999876 65689999999872 236777776532114679999986432
Q ss_pred hCHHHHHHHHHhccccCcEEEEEe
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+..++..+.+.+++||.+++..
T Consensus 136 -s~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 136 -SPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -CcHHHHHHHHHHhcCCCEEEEEe
Confidence 36778888788899999988663
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.2e-05 Score=63.36 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------CeEEEcCCCCC-CCCCC-ceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHNL-PFFDE-AFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------~~~~~~d~~~~-~~~~~-~fD~V 152 (229)
..+.+||-||.|.|..+..+.+. +..+++.+|+++.. ++++.+|+... .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46899999999999999999988 46799999999872 24677776542 11234 89999
Q ss_pred Ecccch-----hhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+..... ..+.-.++++.+.+.|+|||.+++....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 986332 1234578999999999999998877643
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.4e-05 Score=66.83 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=58.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCC-cee
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDE-AFD 150 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~-~fD 150 (229)
+..+.+.....++..|||||+|.|.++..|++.+. .|+++|+++. .++++++|+-..++++. .++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 44555555667899999999999999999999976 8999999976 35589999999887654 789
Q ss_pred EEEcc
Q 027039 151 VAFTA 155 (229)
Q Consensus 151 ~V~~~ 155 (229)
.|++|
T Consensus 98 ~vVaN 102 (259)
T COG0030 98 KVVAN 102 (259)
T ss_pred EEEEc
Confidence 99997
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.2e-05 Score=65.43 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=59.7
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCC
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~ 145 (229)
..++..+.+...++++..|||||.|+|..+..+.+.|. +|+|+|+++- .++++++|+-..++
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 45556667778889999999999999999999999986 9999999987 34588899887654
Q ss_pred CCceeEEEcc
Q 027039 146 DEAFDVAFTA 155 (229)
Q Consensus 146 ~~~fD~V~~~ 155 (229)
-.||.+++|
T Consensus 122 -P~fd~cVsN 130 (315)
T KOG0820|consen 122 -PRFDGCVSN 130 (315)
T ss_pred -cccceeecc
Confidence 369999997
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-05 Score=65.19 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=65.6
Q ss_pred CeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC-------------------eEEEcCCCCC-CCCCCceeEEEccc
Q 027039 98 SKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHNL-PFFDEAFDVAFTAH 156 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~-------------------~~~~~d~~~~-~~~~~~fD~V~~~~ 156 (229)
.+||-||.|.|..+.++.+. +..+++.+|++++.+ +++.+|..+. .-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999998 677999999998832 2444554442 21234899999974
Q ss_pred chh-----hhCHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAE-----ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~-----~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
... .++-.++++.+.+.|+++|.++..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 433 123488999999999999997755
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=70.52 Aligned_cols=92 Identities=17% Similarity=0.051 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCC-C---CCCCceeEEEc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNL-P---FFDEAFDVAFT 154 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~-~---~~~~~fD~V~~ 154 (229)
.|.+|||+=|=||.++.+.+..|..+||+||.|.. ...++++|+.++ . -...+||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 49999999999999999999999889999999976 234888887663 1 12359999999
Q ss_pred c---------cchhhh-CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 155 A---------HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 155 ~---------~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
. ...... +...++..+.++|+|||.+++++...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 6 122222 45778899999999999988666553
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.1e-05 Score=55.38 Aligned_cols=88 Identities=28% Similarity=0.363 Sum_probs=63.4
Q ss_pred EEEEcCCCChhhHHHHhC-CC-CeEEEecCCCC--------C-------CeEEEcCCCC--CCCCC-CceeEEEcccchh
Q 027039 100 VLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDS--------L-------PLVSRADPHN--LPFFD-EAFDVAFTAHLAE 159 (229)
Q Consensus 100 vLDiG~G~G~~~~~l~~~-g~-~~v~~vD~s~~--------~-------~~~~~~d~~~--~~~~~-~~fD~V~~~~~~~ 159 (229)
++|+|||+|... .+... +. ..++++|+++. . +.+..+|... .++.+ ..||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 33333 21 38889999865 1 3567777766 77776 4899993333333
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
+..+...+.++.+.++|+|.+++......
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 33578899999999999999887766533
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00015 Score=62.49 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=75.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHh--------CCCCeEEEecCCCCC-----------------CeEEEcCCCCCCCC--
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNS--------IGVADVTGVELMDSL-----------------PLVSRADPHNLPFF-- 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~--------~g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~~-- 145 (229)
...++.+|+|-+||+|.+..+..+ ....+++|+|+++.. ..+..+|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 446777899999999999888765 234599999998772 22666776554432
Q ss_pred CCceeEEEcc--c-ch----hhh--C-------------HHHHHHHHHhccccCcEEEEEeecC---CcccHHHHH-HHH
Q 027039 146 DEAFDVAFTA--H-LA----EAL--F-------------PSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIV-ELF 199 (229)
Q Consensus 146 ~~~fD~V~~~--~-~~----~~~--~-------------~~~~l~~~~~~LkpgG~lil~~~~~---~~~~~~~l~-~l~ 199 (229)
...||+|++| + .. ... + ...++..+.+.||+||++.++++.. .......+. .+.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll 202 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLL 202 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHH
Confidence 4799999998 1 11 000 0 1358899999999999999888873 122234554 456
Q ss_pred hcCceeEeeeee
Q 027039 200 RTSRFVDAANVT 211 (229)
Q Consensus 200 ~~~~~~~~~~~~ 211 (229)
++..+..+..+.
T Consensus 203 ~~~~i~aVI~Lp 214 (311)
T PF02384_consen 203 ENGYIEAVISLP 214 (311)
T ss_dssp HHEEEEEEEE--
T ss_pred hhchhhEEeecc
Confidence 677777776653
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=63.61 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCC-CC---CCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHN-LP---FFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~-~~---~~~~~fD~V~~ 154 (229)
-++.++||+-||+|..+.+...+|..+|+.+|.++.. ..++..|... ++ -...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 3789999999999999999999999999999999771 3366667443 21 14689999999
Q ss_pred ccchhhhC-HHHHHHHHH--hccccCcEEEEEeecC
Q 027039 155 AHLAEALF-PSRFVGEME--RTVKIGGVCMVLMEEC 187 (229)
Q Consensus 155 ~~~~~~~~-~~~~l~~~~--~~LkpgG~lil~~~~~ 187 (229)
.--..... ..+++..+. ..|+++|.+++-.+..
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 62111111 366777776 7899999988776653
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=58.40 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=73.0
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEc
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
.+....-.+.+|||+|+|+|..+++-+..|...|++.|+.+. .+.+...|.-. .+..||+++.
T Consensus 72 ~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~La 148 (218)
T COG3897 72 DDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLA 148 (218)
T ss_pred hcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEe
Confidence 333445678999999999999999988888889999998865 22244444433 5689999999
Q ss_pred ccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHH
Q 027039 155 AHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQ 194 (229)
Q Consensus 155 ~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~ 194 (229)
..+.... .-.+++. +.+.++..|..+++.+.+..+-.+.
T Consensus 149 gDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk~ 188 (218)
T COG3897 149 GDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYLPKK 188 (218)
T ss_pred eceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCCchh
Confidence 8654433 4556666 7888888888777666665554333
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.3e-05 Score=60.09 Aligned_cols=94 Identities=18% Similarity=0.100 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCC-C-CCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHN-L-PFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~-~-~~~~~~fD~V~~~~~~ 158 (229)
.+|.+||+||-|-|...-.+.+.+...=+.++..+. .+-...+..++ + .++|+.||-|+-..+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 789999999999999998888883336666777776 22244555554 2 2568899999987665
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
++- +...+.+.+.++|||+|.+-.+-..+.
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence 555 778888999999999999775555443
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.5e-05 Score=60.47 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.|.+++|+|||.|.+..+.+.-+...|.|+|+.++ .+++.++|..++-+..+.||.++.|
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 68999999999999998877777779999999987 3458899998887778999999998
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.7e-05 Score=64.29 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCC-CC--CCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHN-LP--FFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~-~~--~~~~~fD~V~~ 154 (229)
..+.+|||+=|=+|.++.+.+..|..+|+.+|.|.. ...++.+|+.+ +. -..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 578999999999999999988888889999999976 23477777755 21 12469999999
Q ss_pred c--cchh----hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh
Q 027039 155 A--HLAE----AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (229)
Q Consensus 155 ~--~~~~----~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~ 200 (229)
. .+.. .. +..+++..+.++|+|||.++++.. ...-+.+.+.+...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc-s~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC-SHHISPDFLLEAVA 253 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE---TTS-HHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC-CcccCHHHHHHHHH
Confidence 7 1111 11 456788999999999999875444 34444455555433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00049 Score=55.15 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=69.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC-------------eEEEcCCCCCC---CCCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------LVSRADPHNLP---FFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~-------------~~~~~d~~~~~---~~~~~fD~V~~ 154 (229)
-.++++++||-+|+.+|.....++.. |.+.++|++.++.+. --+.+|+.... +--+..|+|+.
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence 35689999999999999999999998 878999999998832 24456665421 22356899887
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEeecC
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
. +..-....-+..++...||+||.+++.+...
T Consensus 152 D-VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKAr 183 (231)
T COG1889 152 D-VAQPNQAEILADNAEFFLKKGGYVVIAIKAR 183 (231)
T ss_pred e-cCCchHHHHHHHHHHHhcccCCeEEEEEEee
Confidence 3 3321123446788899999999888887664
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=61.63 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-------------------EEEcCCCCCCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------VSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-------------------~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
++..+||=||.|.|..+.++.+.+. +|+-+|++++.++ ++. ...+ -..++||+|+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEEEEc
Confidence 6679999999999999999999875 9999999987432 111 1111 123689999985
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.. ++.++.+.+.+.|+|||.++...
T Consensus 147 s~----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CChHHHHHHHHhcCCCcEEEECC
Confidence 32 46788899999999999977543
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00045 Score=58.41 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C--CCeEEEecCCCCC----------------CeEEEcCCCCC---CCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G--VADVTGVELMDSL----------------PLVSRADPHNL---PFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g--~~~v~~vD~s~~~----------------~~~~~~d~~~~---~~~~~~fD~V 152 (229)
...-+||||.||+|.......+. + ..+|.-.|.++.. +.|.++|+.+. .--+-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46779999999999988776655 3 3589999999873 25889988763 1123467999
Q ss_pred Ecccchhhh-C---HHHHHHHHHhccccCcEEEEEeecCCcc-----------------------cHHHHHHHHhcCcee
Q 027039 153 FTAHLAEAL-F---PSRFVGEMERTVKIGGVCMVLMEECAGR-----------------------EIKQIVELFRTSRFV 205 (229)
Q Consensus 153 ~~~~~~~~~-~---~~~~l~~~~~~LkpgG~lil~~~~~~~~-----------------------~~~~l~~l~~~~~~~ 205 (229)
+.+.+.+.+ + ....+..+.+.+.|||.++ .+...-.. +..++-+++...+|.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lI-yTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLI-YTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFE 292 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEE-EcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCc
Confidence 988777766 3 2457889999999999987 43321111 445666666777777
Q ss_pred Eeee
Q 027039 206 DAAN 209 (229)
Q Consensus 206 ~~~~ 209 (229)
++..
T Consensus 293 K~~q 296 (311)
T PF12147_consen 293 KIDQ 296 (311)
T ss_pred hhhh
Confidence 6665
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.8e-06 Score=66.78 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccc-hhhhCHHHHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHL-AEALFPSRFV 167 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~-~~~~~~~~~l 167 (229)
+.+.++||+|+|.|..+..++.. +.+|++++.|..|.. +-.....++.-.+-+||+|.|-++ ..+.+|.+++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL 189 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLL 189 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHH
Confidence 34578999999999999988877 557899999987543 111122222222457999999764 4556999999
Q ss_pred HHHHhcccc-CcEEEEE
Q 027039 168 GEMERTVKI-GGVCMVL 183 (229)
Q Consensus 168 ~~~~~~Lkp-gG~lil~ 183 (229)
+.++.+|+| +|++++.
T Consensus 190 ~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 190 EDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhccCCCcEEEE
Confidence 999999999 8987755
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00033 Score=66.98 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=66.7
Q ss_pred HHHhcccC-CCCCeEEEEcCCCChhhHHHHhC------C-------------------------------------CCeE
Q 027039 87 HLQGKSLL-FNHSKVLCVSAGAGHEVMAFNSI------G-------------------------------------VADV 122 (229)
Q Consensus 87 ~l~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~------g-------------------------------------~~~v 122 (229)
.++..... +++..++|.+||+|.+.++.+.. | ..++
T Consensus 180 a~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i 259 (702)
T PRK11783 180 AILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKF 259 (702)
T ss_pred HHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceE
Confidence 33333444 56889999999999999887542 0 1269
Q ss_pred EEecCCCC----------------CCeEEEcCCCCCCCC--CCceeEEEcc--cchhh---hCHHHHHHHHH---hcccc
Q 027039 123 TGVELMDS----------------LPLVSRADPHNLPFF--DEAFDVAFTA--HLAEA---LFPSRFVGEME---RTVKI 176 (229)
Q Consensus 123 ~~vD~s~~----------------~~~~~~~d~~~~~~~--~~~fD~V~~~--~~~~~---~~~~~~l~~~~---~~Lkp 176 (229)
+|+|+++. .+.+.++|+.+++.+ .++||+|++| +.... .+..++..++. +...+
T Consensus 260 ~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~ 339 (702)
T PRK11783 260 YGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG 339 (702)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC
Confidence 99999987 245889999887643 3579999999 22111 12233444444 44448
Q ss_pred CcEEEEEeec
Q 027039 177 GGVCMVLMEE 186 (229)
Q Consensus 177 gG~lil~~~~ 186 (229)
|+.++++++.
T Consensus 340 g~~~~llt~~ 349 (702)
T PRK11783 340 GWNAALFSSS 349 (702)
T ss_pred CCeEEEEeCC
Confidence 9999877775
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0003 Score=57.40 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCC------CCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNL------PFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~------~~~~~~fD 150 (229)
-..++.||||.=+|+-+.++|.. ..++|+++|+++. .+.++++++.+. ..+.++||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 47889999999999988888776 4679999999987 344777776541 23568999
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
++|..+-- .+......+..+++|+||.+++
T Consensus 152 faFvDadK--~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 152 FAFVDADK--DNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EEEEccch--HHHHHHHHHHHhhcccccEEEE
Confidence 99985321 1234778999999999999664
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=61.27 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=62.9
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCeE-----------E----EcCCC--CC
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPLV-----------S----RADPH--NL 142 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~~-----------~----~~d~~--~~ 142 (229)
..++..+......-.+.+|||+|||+|...-+..+. ...+++++|.|+.+.++ . ..+.. ..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 444554443333346679999999999877776665 45689999999885430 0 00000 01
Q ss_pred CCCCCceeEEEcccchhhh-C--HHHHHHHHHhccccCcEEEEEeecCCccc
Q 027039 143 PFFDEAFDVAFTAHLAEAL-F--PSRFVGEMERTVKIGGVCMVLMEECAGRE 191 (229)
Q Consensus 143 ~~~~~~fD~V~~~~~~~~~-~--~~~~l~~~~~~LkpgG~lil~~~~~~~~~ 191 (229)
++ ...|+|++++++..+ + ..++++.+.+.+++ .+++++......
T Consensus 99 ~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~---~LVlVEpGt~~G 145 (274)
T PF09243_consen 99 PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP---VLVLVEPGTPAG 145 (274)
T ss_pred cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC---cEEEEcCCChHH
Confidence 22 234999999888777 3 24455666555555 444555544333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00038 Score=61.23 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=73.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C--CCeEEEecCCCC---------------CCeEEEcCCCCCC---CCCCceeE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G--VADVTGVELMDS---------------LPLVSRADPHNLP---FFDEAFDV 151 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g--~~~v~~vD~s~~---------------~~~~~~~d~~~~~---~~~~~fD~ 151 (229)
..++|.+|||+++++|.-+..+++. . ...|+++|.++. .+.....|....+ ...++||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 4478999999999999999999887 2 235699999987 2336666765443 22236999
Q ss_pred EEcc------cc-------hhhh----------CHHHHHHHHHhccccCcEEEEEeecCCcccHH-HHHHHHhcCce
Q 027039 152 AFTA------HL-------AEAL----------FPSRFVGEMERTVKIGGVCMVLMEECAGREIK-QIVELFRTSRF 204 (229)
Q Consensus 152 V~~~------~~-------~~~~----------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~-~l~~l~~~~~~ 204 (229)
|+.. .+ .+.. ...+++..+.+.|||||.++-.+-.-...+.+ -+.....+..-
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~ 309 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPD 309 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCC
Confidence 9975 11 1111 12578899999999999977555443333333 34445544433
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.001 Score=54.74 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=67.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-----------EEEcCCCCCC---CCCCceeEEEcc-cc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------VSRADPHNLP---FFDEAFDVAFTA-HL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-----------~~~~d~~~~~---~~~~~fD~V~~~-~~ 157 (229)
...++..+||||+.||-++.-+.+.|...|+|+|..-..+. +...+++.+. + .+..|++++. .+
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~DvSF 154 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TEKPDLIVIDVSF 154 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-ccCCCeEEEEeeh
Confidence 34688999999999999999999999999999999875221 3334444432 2 2378899985 23
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
. ....++-.+...++|+|.+++.+..
T Consensus 155 I---SL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 155 I---SLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred h---hHHHHHHHHHHhcCCCceEEEEecc
Confidence 3 3677888899999999988877644
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.59 E-value=8e-05 Score=65.84 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCC-CCCCceeEEEcccch
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLP-FFDEAFDVAFTAHLA 158 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~-~~~~~fD~V~~~~~~ 158 (229)
+.+|||+.||+|..++.++.. |...|+++|+++.. +++.++|+..+- -....||+|...-+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 468999999999999999987 67799999999872 346666666532 123579999986432
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEE
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.|..++..+.+.+++||.+++.
T Consensus 125 ---s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 ---TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ---CcHHHHHHHHHhcccCCEEEEE
Confidence 3678999999999999998866
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=56.02 Aligned_cols=92 Identities=25% Similarity=0.173 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCC-C-CCC-CceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNL-P-FFD-EAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~~~-~~fD~V~~~ 155 (229)
-.+.++||+=+|+|..+.+...+|...++.+|.+.. ...++..|+... + ... ++||+|+..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 378999999999999999999999999999999976 233666776632 1 212 259999997
Q ss_pred c-chhhh-CHHHHHHH--HHhccccCcEEEEEeec
Q 027039 156 H-LAEAL-FPSRFVGE--MERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~-~~~~~-~~~~~l~~--~~~~LkpgG~lil~~~~ 186 (229)
- +...+ ++...+.. -...|+|+|.+++-.+.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 2 22222 33444444 45679999997765554
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.001 Score=50.70 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhc-ccCCCCCeEEEEcCCCChhhHHHHh-----CCCCeEEEecCCCCCCe------------------E
Q 027039 79 TSYAHFFKHLQGK-SLLFNHSKVLCVSAGAGHEVMAFNS-----IGVADVTGVELMDSLPL------------------V 134 (229)
Q Consensus 79 ~~~~~~~~~l~~~-~~~~~~~~vLDiG~G~G~~~~~l~~-----~g~~~v~~vD~s~~~~~------------------~ 134 (229)
+.+..++..+... ....+...|+|+|||.|+++..++. ....+|+++|.++...+ +
T Consensus 7 ~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 86 (141)
T PF13679_consen 7 ERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSF 86 (141)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchh
Confidence 3344444444332 3346788999999999999999999 54459999999987322 2
Q ss_pred EEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 135 SRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 135 ~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
.+++..+.. .....++++.-|....+.+ .+++...+ |+-.+++.++.+.
T Consensus 87 ~~~~~~~~~-~~~~~~~~vgLHaCG~Ls~-~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 87 IQGDIADES-SSDPPDILVGLHACGDLSD-RALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred hccchhhhc-ccCCCeEEEEeecccchHH-HHHHHHHH---cCCCEEEEcCCcc
Confidence 222222211 1455667766554443322 23333333 6666666666643
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00078 Score=59.24 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=64.1
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCC--------C---C-----C
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLP--------F---F-----D 146 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~--------~---~-----~ 146 (229)
.++||++||+|.++..++... .+|+|+|+++.+ +.++.+|+.++- + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999988874 599999999872 347788876521 1 0 1
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
..||+|+..-- ..--..++++.+. +|++.++ +++...---+.+..+.+..++.++.-++-
T Consensus 278 ~~~d~v~lDPP-R~G~~~~~l~~l~---~~~~ivY--vsC~p~tlaRDl~~L~~~Y~l~~v~~~Dm 337 (353)
T TIGR02143 278 YNCSTIFVDPP-RAGLDPDTCKLVQ---AYERILY--ISCNPETLKANLEQLSETHRVERFALFDQ 337 (353)
T ss_pred CCCCEEEECCC-CCCCcHHHHHHHH---cCCcEEE--EEcCHHHHHHHHHHHhcCcEEEEEEEccc
Confidence 23799888521 1001234444444 3677644 33322222334555544455555554443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00092 Score=58.99 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCC-C-CC--------------
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNL-P-FF-------------- 145 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~-~-~~-------------- 145 (229)
+.++||++||+|.++..++.. ..+|+|+|.++.+ +.++.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 357999999999999988877 4599999999872 34778887652 1 10
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
..+||+|+..-=-. --..++++.+.+ |++.++ +++...--.+.+..+.+..++.++.-++-
T Consensus 286 ~~~~D~v~lDPPR~-G~~~~~l~~l~~---~~~ivy--vSC~p~tlarDl~~L~~gY~l~~v~~~Dm 346 (362)
T PRK05031 286 SYNFSTIFVDPPRA-GLDDETLKLVQA---YERILY--ISCNPETLCENLETLSQTHKVERFALFDQ 346 (362)
T ss_pred CCCCCEEEECCCCC-CCcHHHHHHHHc---cCCEEE--EEeCHHHHHHHHHHHcCCcEEEEEEEccc
Confidence 12589999852111 012344455543 666644 33322222233554544555555555544
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00029 Score=59.40 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=58.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCC---CceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFD---EAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~---~~fD~V~~~~ 156 (229)
.+.++..|+|||+|.|.++..|.+.+ .+++++|+++. .++++.+|+.++...+ +.-..|++|
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N- 104 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGN- 104 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEE-
T ss_pred CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEE-
Confidence 44689999999999999999999997 69999999976 4568999999987544 456677776
Q ss_pred chhhhCHHHHHHHHHhcccc
Q 027039 157 LAEALFPSRFVGEMERTVKI 176 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~Lkp 176 (229)
+.. .....++.++...-+.
T Consensus 105 lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 105 LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp ETG-TGHHHHHHHHHHHGGG
T ss_pred ecc-cchHHHHHHHhhcccc
Confidence 222 1234455555554444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00078 Score=62.30 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-C--------CCeEEEecCCCCCC---------------eEEEcCCCCC-----CCCC
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-G--------VADVTGVELMDSLP---------------LVSRADPHNL-----PFFD 146 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g--------~~~v~~vD~s~~~~---------------~~~~~d~~~~-----~~~~ 146 (229)
.+.+|||.|||+|.+..++... . ..+++|+|+++..+ .+...|.... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999888754 1 14789999987622 1232332211 1112
Q ss_pred CceeEEEcc--cchhhh----------------------------------C-----------HHHHH-HHHHhccccCc
Q 027039 147 EAFDVAFTA--HLAEAL----------------------------------F-----------PSRFV-GEMERTVKIGG 178 (229)
Q Consensus 147 ~~fD~V~~~--~~~~~~----------------------------------~-----------~~~~l-~~~~~~LkpgG 178 (229)
+.||+|++| +..... . ...++ +.+.+.|++||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 589999999 211000 0 01133 56788999999
Q ss_pred EEEEEeecC--CcccHHHHHH-HHhcCceeEeeeee
Q 027039 179 VCMVLMEEC--AGREIKQIVE-LFRTSRFVDAANVT 211 (229)
Q Consensus 179 ~lil~~~~~--~~~~~~~l~~-l~~~~~~~~~~~~~ 211 (229)
++.++++.. .......+.+ ++++..+..+..+.
T Consensus 191 ~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~ 226 (524)
T TIGR02987 191 YVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQ 226 (524)
T ss_pred EEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECC
Confidence 999998873 2334455655 56777787777763
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00017 Score=55.29 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=40.6
Q ss_pred CCCCCCCceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeec
Q 027039 141 NLPFFDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 141 ~~~~~~~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..+|.+++.|+|.+.|+.+|+. ...++++.++.|||||++-+.++.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 3679999999999999999993 467899999999999999888765
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00078 Score=53.47 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=63.8
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
...+.|+|+|+|.++...++. ..+|++++.+|. .++++.+|+.+..| ...|+|+|--+.-.+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 478999999999999888777 459999999887 45588999999888 578999995443333
Q ss_pred ---CHHHHHHHHHhccccCcEEE
Q 027039 162 ---FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 162 ---~~~~~l~~~~~~LkpgG~li 181 (229)
.....+..+.+.||-++.++
T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccc
Confidence 22456777777888888854
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00098 Score=53.18 Aligned_cols=91 Identities=18% Similarity=0.105 Sum_probs=61.0
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC---------------------CeEEEcCCCCCCCCCCc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL---------------------PLVSRADPHNLPFFDEA 148 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~---------------------~~~~~~d~~~~~~~~~~ 148 (229)
..++++++|+|+=.|.|.++.-++.. +.+.|++.-+.+.. .+.+-.+.-.++ +.+.
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 35699999999999999999999876 45688887555430 111112222223 4456
Q ss_pred eeEEEcccchhhh--------CHHHHHHHHHhccccCcEEEEE
Q 027039 149 FDVAFTAHLAEAL--------FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 149 fD~V~~~~~~~~~--------~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.|+++.+...+-+ ...++..++++.|||||.+.+.
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 7777765222211 2478889999999999997754
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00093 Score=52.19 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=65.2
Q ss_pred eEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCC--CCCCc-eeEEEcc----
Q 027039 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLP--FFDEA-FDVAFTA---- 155 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~--~~~~~-fD~V~~~---- 155 (229)
.|+|+.||.|..+++++... .+|+++|+++. .+.++++|..+.. +..+. +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 68999999999999999994 49999999987 4569999987742 22222 8999986
Q ss_pred ---c-------chhhhCH---HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHH----HhcCceeEeeeeeecCCe
Q 027039 156 ---H-------LAEALFP---SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL----FRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 156 ---~-------~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l----~~~~~~~~~~~~~~~~~~ 216 (229)
+ +...+.| .++++.+.+. .+ .+++..+. ..+..++.++ +....-.+++..-..|..
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~--nv~l~LPR--n~dl~ql~~~~~~l~~~~~~~~v~~~~~n~~~ 153 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TP--NVVLFLPR--NSDLNQLSQLTRELFGPSKKCEVEQNYLNGKL 153 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S---EEEEEET--TB-HHHHHHT----T-TTEEEEEEEEEETTEE
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhh-CC--CEEEEeCC--CCCHHHHHHHhccccCCCCeEEEEEehcCCee
Confidence 1 1112222 3444444333 23 34444554 5566666655 455566667766666654
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0039 Score=54.01 Aligned_cols=94 Identities=9% Similarity=0.004 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-----CCCeEEEecCCCCC---------------Ce--EEEcCCCC----CCC--CC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMDSL---------------PL--VSRADPHN----LPF--FD 146 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-----g~~~v~~vD~s~~~---------------~~--~~~~d~~~----~~~--~~ 146 (229)
.++..++|+|||+|.-+..|.+. ....++++|+|... +. -+.+|..+ ++- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 67889999999999876655432 12389999999752 22 24566544 211 12
Q ss_pred CceeEEEcc-cchhhhCH---HHHHHHHHh-ccccCcEEEEEeecCC
Q 027039 147 EAFDVAFTA-HLAEALFP---SRFVGEMER-TVKIGGVCMVLMEECA 188 (229)
Q Consensus 147 ~~fD~V~~~-~~~~~~~~---~~~l~~~~~-~LkpgG~lil~~~~~~ 188 (229)
....+++.- .....+.| ..+++++.+ .|+|||.+++-++.+.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 335565543 33333334 568889999 9999999998887753
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0008 Score=58.54 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=67.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCC-CCeEEEecCCCCCCe----------------------EEEcCCCCC-CCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL----------------------VSRADPHNL-PFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~~~~----------------------~~~~d~~~~-~~~~~~fD 150 (229)
+.-.+||-+|.|.|....++.+.| ..+++-+|++|.+++ ++..|+.++ .-..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 556789999999999999999995 889999999998665 334444432 12245899
Q ss_pred EEEccc------chhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 151 VAFTAH------LAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 151 ~V~~~~------~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+|+..- ...-+.-.++..-+.+.|+++|.+++...
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 999751 12222457888999999999999775543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00025 Score=60.46 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCC-C-CCCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNL-P-FFDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~-~-~~~~~fD~V~~ 154 (229)
..++..|||+++++|.-+..+++. +.+.+++.|+++. .+.....|.... + .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 478899999999999999999887 4679999999987 223444555553 1 22346999998
Q ss_pred c----c---------chhhh----------CHHHHHHHHHhcc----ccCcEEEEEeec
Q 027039 155 A----H---------LAEAL----------FPSRFVGEMERTV----KIGGVCMVLMEE 186 (229)
Q Consensus 155 ~----~---------~~~~~----------~~~~~l~~~~~~L----kpgG~lil~~~~ 186 (229)
. . ..+.. ...+++..+.+.+ ||||+++-.+-.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 5 0 11110 0256889999999 999997766544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00062 Score=57.99 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=89.6
Q ss_pred cccCchhHHhhhhhHHHHHHHHHhc----ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------
Q 027039 67 RLWSSKSWKQQVTSYAHFFKHLQGK----SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------- 131 (229)
Q Consensus 67 ~~~~~~~w~~~~~~~~~~~~~l~~~----~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------- 131 (229)
+-|++..-+++...+..+++.+-.. ..-+...+||--|||.|.++..|+..|. .+.|=+.|--|
T Consensus 117 RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~ 195 (369)
T KOG2798|consen 117 RDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYC 195 (369)
T ss_pred HHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhh
Confidence 4566655555556666666655321 2224467899999999999999998876 55554444220
Q ss_pred ---------------------------Ce-----------------EEEcCCCCCC---CCCCceeEEEcccchhhh-CH
Q 027039 132 ---------------------------PL-----------------VSRADPHNLP---FFDEAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 132 ---------------------------~~-----------------~~~~d~~~~~---~~~~~fD~V~~~~~~~~~-~~ 163 (229)
+. .-.||+.+.- -..+.||+|+.+.+.... +.
T Consensus 196 ~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Ni 275 (369)
T KOG2798|consen 196 KQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNI 275 (369)
T ss_pred ccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHH
Confidence 00 1223332211 112479999988766666 78
Q ss_pred HHHHHHHHhccccCcEEEEEeec--------CC-------cccHHHHHHHHhcCceeEeeee
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEE--------CA-------GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~--------~~-------~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
.+.++.+..+|||||.-+ -++. ++ +.+.+.+.++.+..+|+.+++-
T Consensus 276 leYi~tI~~iLk~GGvWi-NlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 276 LEYIDTIYKILKPGGVWI-NLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHHHHHhccCCcEEE-eccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999999999999754 3221 11 2356777777776666666543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=52.69 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=67.0
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC-------------CCeEEEcCCCCCC---CCCCceeE
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS-------------LPLVSRADPHNLP---FFDEAFDV 151 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~ 151 (229)
+...++|+.+||-+|+++|.....++.. +.+-|++++.|+- .+--+.-|+.... ..-.-.|+
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEE
Confidence 3456799999999999999999998888 5678999999875 1223344444321 12246888
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeecC
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
||+. +..-....-+.-++...||+||.+++.+...
T Consensus 230 IFaD-vaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 230 IFAD-VAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred Eecc-CCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 8883 3321112335567888999999998887653
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00017 Score=55.86 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe------------------EEEcCCC--CCCCCCCceeEEE
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL------------------VSRADPH--NLPFFDEAFDVAF 153 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~------------------~~~~d~~--~~~~~~~~fD~V~ 153 (229)
.+..||++|.|- |..+..++.. +...|..+|-++..+. +...+.. +...+..+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 457899999994 6666666665 6668999998876322 1111111 1112346899999
Q ss_pred cccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 154 TAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 154 ~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
+....-.. .-..+++.|+..|+|.|.-+ +.....+++.+.+....+..+|.-.
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al-~fsPRRg~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRAL-LFSPRRGQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCccccee-EecCcccchHHHHHHHHHhceeEEE
Confidence 97433322 35678899999999999955 5555667788888888887776543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00081 Score=57.59 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=48.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC-------------CeEEEcCCCCCC--CCCC--ceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL-------------PLVSRADPHNLP--FFDE--AFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~-------------~~~~~~d~~~~~--~~~~--~fD~V~ 153 (229)
..+++..++|.+||.|..+..+++. + .++|+|+|.++.+ +.++++|..++. .+++ ++|.|+
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 3468889999999999999999988 3 5799999999863 446777766642 1122 799998
Q ss_pred cc
Q 027039 154 TA 155 (229)
Q Consensus 154 ~~ 155 (229)
+.
T Consensus 96 ~D 97 (296)
T PRK00050 96 LD 97 (296)
T ss_pred EC
Confidence 86
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0042 Score=53.83 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=63.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh--
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-- 161 (229)
+.-...+|+|.|.|..+..+... +..+-+++.... .++.+.+|..+- .| +-|+|++-.+.++.
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P--~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TP--KGDAIWMKWILHDWTD 251 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CC--CcCeEEEEeecccCCh
Confidence 44578999999999999998885 445667766543 145566666553 33 34699998888877
Q ss_pred -CHHHHHHHHHhccccCcEEEEE
Q 027039 162 -FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 -~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+-.++++++++.|+|||.+++.
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEE
Confidence 3478999999999999998855
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0027 Score=51.93 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--C------C--CeEEEecCCCCC----CeEEEcCCCCCC--------CCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--G------V--ADVTGVELMDSL----PLVSRADPHNLP--------FFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g------~--~~v~~vD~s~~~----~~~~~~d~~~~~--------~~~~~fD~V 152 (229)
..-.+++|+.+-+|.+++.++++ . . ..++++|+.+-. +--+++|+.... |..++.|+|
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlV 119 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLV 119 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEE
Confidence 55678999999999999999765 1 1 139999999862 236788888743 556799999
Q ss_pred Eccc---------chhhhC---HHHHHHHHHhccccCcEEEEEeecCC--cccHHHHHHHHhcCceeEee
Q 027039 153 FTAH---------LAEALF---PSRFVGEMERTVKIGGVCMVLMEECA--GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 153 ~~~~---------~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~~--~~~~~~l~~l~~~~~~~~~~ 208 (229)
+|.. +.+.+. ...++.-...+|||||.|+-=.-... ..-..++..+|++.-..+.+
T Consensus 120 vcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv~~~KPr 189 (294)
T KOG1099|consen 120 VCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPR 189 (294)
T ss_pred EeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhceeeecCC
Confidence 9971 222221 13455666789999999763222211 11234566677765555444
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0004 Score=49.97 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=36.5
Q ss_pred EEEcCCCChhhHHHHhC--CC--CeEEEecCCC---C------------CCeEEEcCCCCC--CCCCCceeEEEcccchh
Q 027039 101 LCVSAGAGHEVMAFNSI--GV--ADVTGVELMD---S------------LPLVSRADPHNL--PFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 101 LDiG~G~G~~~~~l~~~--g~--~~v~~vD~s~---~------------~~~~~~~d~~~~--~~~~~~fD~V~~~~~~~ 159 (229)
||||+..|..+..+++. .. .+++++|..+ . .+.+++++..+. .++++++|+++...-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999988887765 22 3799999998 2 234666666542 13357999999853222
Q ss_pred hhCHHHHHHHHHhccccCcEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil 182 (229)
.-.....+..+.+.|+|||.+++
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEE
Confidence 22356678889999999998764
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=51.00 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCC----------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLP---------------- 143 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~---------------- 143 (229)
.++ ++||+-||.|.++..++... .+|+|+|.++. .++|+.+++++..
T Consensus 196 ~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~ 273 (352)
T PF05958_consen 196 SKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGID 273 (352)
T ss_dssp -TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-
T ss_pred CCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhh
Confidence 344 89999999999999999984 49999999977 3447776654321
Q ss_pred CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 144 FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
..+..+|+|+..---..++ ..+++.+. ++. ++ +.+++...--.+.+..+.+..++.++.-++-
T Consensus 274 ~~~~~~d~vilDPPR~G~~-~~~~~~~~---~~~-~i-vYvSCnP~tlaRDl~~L~~~y~~~~v~~~Dm 336 (352)
T PF05958_consen 274 LKSFKFDAVILDPPRAGLD-EKVIELIK---KLK-RI-VYVSCNPATLARDLKILKEGYKLEKVQPVDM 336 (352)
T ss_dssp GGCTTESEEEE---TT-SC-HHHHHHHH---HSS-EE-EEEES-HHHHHHHHHHHHCCEEEEEEEEE-S
T ss_pred hhhcCCCEEEEcCCCCCch-HHHHHHHh---cCC-eE-EEEECCHHHHHHHHHHHhhcCEEEEEEEeec
Confidence 1223688887641000011 23444443 232 43 3555532222334555555555555554444
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0078 Score=53.01 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=71.5
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCC---------------------------------C-------eEEEe
Q 027039 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------A-------DVTGV 125 (229)
Q Consensus 86 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~---------------------------------~-------~v~~v 125 (229)
..++.+...+++..++|--||+|.+.++.+..+. . .++|+
T Consensus 181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381)
T COG0116 181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381)
T ss_pred HHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe
Confidence 3444556667888999999999999999876631 1 27799
Q ss_pred cCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc-----cchhhhC----HHHHHHHHHhccccCcEE
Q 027039 126 ELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA-----HLAEALF----PSRFVGEMERTVKIGGVC 180 (229)
Q Consensus 126 D~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~-----~~~~~~~----~~~~l~~~~~~LkpgG~l 180 (229)
|+++. .++|.++|+..++-+-+.+|+|+|| .+..+.. ..++.+.+++.++--+..
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 99987 3559999999976433799999999 1222211 234556666777777777
Q ss_pred EEEeec
Q 027039 181 MVLMEE 186 (229)
Q Consensus 181 il~~~~ 186 (229)
++.+.+
T Consensus 341 v~tt~e 346 (381)
T COG0116 341 VFTTSE 346 (381)
T ss_pred EEEccH
Confidence 766654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.016 Score=48.34 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-----------------------EEEcCCCCCCCCCCc-eeE
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-----------------------VSRADPHNLPFFDEA-FDV 151 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-----------------------~~~~d~~~~~~~~~~-fD~ 151 (229)
...+||++|+|+|-.+...+.....+|.-.|....... ...+...+..+-... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 46679999999998888877764458888888765111 111112221111223 999
Q ss_pred EEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 152 AFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 152 V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
|++..+..+. .+..++.-+...|..+|.+++.+.-.+
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9998655555 778888889999999997666665544
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0059 Score=49.12 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------------CeEEEcCCCC-CC--CCCCc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------------PLVSRADPHN-LP--FFDEA 148 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------------~~~~~~d~~~-~~--~~~~~ 148 (229)
++.-...|||||.|-+...|+.. +..-+.|.+|-.+. +.+...+... +| |..++
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 45667899999999999999999 87799999987551 1122222211 11 22222
Q ss_pred eeEEEcc----cchhhhC-----HHHHHHHHHhccccCcEEEEEeecC
Q 027039 149 FDVAFTA----HLAEALF-----PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 149 fD~V~~~----~~~~~~~-----~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
.+=.+.. |+-.-.. -..++.+..-+|++||.++.+++..
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 2211111 1111111 1457788889999999999887763
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0048 Score=47.81 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCeEE-EcCCCC---------CCCCCCceeEEEcccchhhh----
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPLVS-RADPHN---------LPFFDEAFDVAFTAHLAEAL---- 161 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~~~-~~d~~~---------~~~~~~~fD~V~~~~~~~~~---- 161 (229)
+++++-+|+.. .+...++-. |..+++.+|.++-.++-. +..+.. +.--.++||++.|.+..+|.
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGR 80 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGR 80 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhccccccc
Confidence 56777887772 222233333 777899999875433210 111111 11124789999987655544
Q ss_pred --CH------HHHHHHHHhccccCcEEEEEeecC---------CcccHHHHHHHHhcCceeEeee
Q 027039 162 --FP------SRFVGEMERTVKIGGVCMVLMEEC---------AGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 162 --~~------~~~l~~~~~~LkpgG~lil~~~~~---------~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+| .+.+.++.++|||||.+++.++.. .-|....+..+|..++.+.+-.
T Consensus 81 YGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tfs 145 (177)
T PF03269_consen 81 YGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTFS 145 (177)
T ss_pred cCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeeec
Confidence 22 578899999999999999988763 3456677888888887776643
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.023 Score=48.23 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCCChhhHH-HHhC-C-CCeEEEecCCCC-----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMA-FNSI-G-VADVTGVELMDS-----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~-l~~~-g-~~~v~~vD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+.+|+=||||+=.++.- +++. + ...+.++|+++. .+.|+.+|..+.+..-..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 346999999998655544 5544 3 347999999987 3458888887766545789999987
Q ss_pred cchhhh--CHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEAL--FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~--~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.+.... ...+++..+.+.++||..+++=
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 544433 5789999999999999986533
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.048 Score=44.30 Aligned_cols=121 Identities=13% Similarity=0.086 Sum_probs=70.9
Q ss_pred EEEEcCCCChhhHHHHhCC-CCeEEEecCCCCC----------------CeEEEcCCCCCCCCCC-ceeEEEcccchhhh
Q 027039 100 VLCVSAGAGHEVMAFNSIG-VADVTGVELMDSL----------------PLVSRADPHNLPFFDE-AFDVAFTAHLAEAL 161 (229)
Q Consensus 100 vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~-~fD~V~~~~~~~~~ 161 (229)
|+||||-.|.++.+|.+.| ...++++|+++.+ +++..+|..+. ++.+ ..|.|+...+...+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHHH
Confidence 6899999999999999995 4579999999873 44777775542 2233 37888876544422
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeee--eeecCCeeEEEEEEecc
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAAN--VTVNGSNMTRILMRRTR 226 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 226 (229)
-.+++.+....++..-.++ .-+.. ....+...+...+|.-+.+ +...|.-..++...+..
T Consensus 80 -I~~ILe~~~~~~~~~~~lI-LqP~~---~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~ 141 (205)
T PF04816_consen 80 -IIEILEAGPEKLSSAKRLI-LQPNT---HAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGE 141 (205)
T ss_dssp -HHHHHHHTGGGGTT--EEE-EEESS----HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred -HHHHHHhhHHHhccCCeEE-EeCCC---ChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCC
Confidence 3556666666666655655 44442 3455666655555544444 45556555555555543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.017 Score=51.32 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCe---------------EEEcCCCCCC---CCCCceeEEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL---------------VSRADPHNLP---FFDEAFDVAF 153 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~---------------~~~~d~~~~~---~~~~~fD~V~ 153 (229)
.++|.+|||+++-+|--+.++|.. +.+.|+|.|.+...+. +...|....| |+. +||-|.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 388999999999999888888876 6679999998877222 4555665544 433 899998
Q ss_pred cccc----------------------hhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHH-HHhcCceeEeee
Q 027039 154 TAHL----------------------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRTSRFVDAAN 209 (229)
Q Consensus 154 ~~~~----------------------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~-l~~~~~~~~~~~ 209 (229)
...- ..+. -..+++..+...+|+||+++-.+-.-...+.+.+.+ .+++...+++..
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p 397 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVP 397 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEecc
Confidence 6411 1111 125788899999999999765554433334444443 455554555544
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.036 Score=46.64 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=58.9
Q ss_pred CeEEEEcCCC--ChhhHHHHhC--CCCeEEEecCCCC-------------C--CeEEEcCCCCCC----------C--CC
Q 027039 98 SKVLCVSAGA--GHEVMAFNSI--GVADVTGVELMDS-------------L--PLVSRADPHNLP----------F--FD 146 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~--g~~~v~~vD~s~~-------------~--~~~~~~d~~~~~----------~--~~ 146 (229)
...||||||- -....++++. +..+|+-+|.++. . ..++++|+.+.. + .+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5799999995 3345566655 6779999999875 2 458899987732 1 13
Q ss_pred CceeEEEcccchhhh----CHHHHHHHHHhccccCcEEEEEeecCCcc--cHHHHHHHHh
Q 027039 147 EAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGR--EIKQIVELFR 200 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~----~~~~~l~~~~~~LkpgG~lil~~~~~~~~--~~~~l~~l~~ 200 (229)
...-+++. .+.+++ +|..+++.+.+.|.||..+++.....+.. ..+.+.+.+.
T Consensus 150 rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 150 RPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYA 208 (267)
T ss_dssp S--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHH
T ss_pred CCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 34444444 444444 58999999999999999999776665432 2234445554
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0089 Score=50.44 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=57.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEcCC--------------CC-----------CCC-C
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADP--------------HN-----------LPF-F 145 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~--------------~~-----------~~~-~ 145 (229)
.....+.+|||+|||+|...+.....|...+...|.+...+..+..+. .. +-+ .
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 344678999999999999999988887568888888877443111111 10 000 0
Q ss_pred CC--ceeEEEcccchhhhCH-HHH-HHHHHhccccCcEEEEEe
Q 027039 146 DE--AFDVAFTAHLAEALFP-SRF-VGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 146 ~~--~fD~V~~~~~~~~~~~-~~~-l~~~~~~LkpgG~lil~~ 184 (229)
.+ .||+|.+.-.....+. ..+ .......++++|.+++..
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 12 5677666544443322 223 455566789999877554
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.094 Score=42.50 Aligned_cols=98 Identities=11% Similarity=0.100 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-----CCCeEEEecCCC--------------CCCeEEEcC
Q 027039 78 VTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMD--------------SLPLVSRAD 138 (229)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-----g~~~v~~vD~s~--------------~~~~~~~~d 138 (229)
+-.+..++..+ .+..|+|+|.-.|.-+...|.. +.++|+|+|+.. ..+++++||
T Consensus 21 m~~~qeli~~~-------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gd 93 (206)
T PF04989_consen 21 MVAYQELIWEL-------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGD 93 (206)
T ss_dssp HHHHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-
T ss_pred HHHHHHHHHHh-------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECC
Confidence 34445666655 6789999999999777666542 457999999942 256699998
Q ss_pred CCCCC----C----CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 139 PHNLP----F----FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 139 ~~~~~----~----~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
..+.. . ......+|+-..-..+.+-.+.++.....+++|+++++
T Consensus 94 s~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 94 SIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred CCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 76632 1 12344566653322223567777889999999999773
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.017 Score=52.22 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=49.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCC---CCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPF---FDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~---~~~~fD~V~~ 154 (229)
...++.++||+=||.|.++..++... .+|+|+|++++. +.|+.+++++... ....+|.|+.
T Consensus 290 ~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 290 ELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 33577899999999999999999774 499999999873 4488888877532 2358899997
Q ss_pred c
Q 027039 155 A 155 (229)
Q Consensus 155 ~ 155 (229)
.
T Consensus 369 D 369 (432)
T COG2265 369 D 369 (432)
T ss_pred C
Confidence 4
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.047 Score=46.88 Aligned_cols=94 Identities=19% Similarity=0.266 Sum_probs=59.1
Q ss_pred CCeEEEEcCCCChhhHHHHhC---------C------------CCeEEEecCCCC-------------------------
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI---------G------------VADVTGVELMDS------------------------- 130 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~---------g------------~~~v~~vD~s~~------------------------- 130 (229)
..+||+||.|.|....+++.. . ..+++.+|+.+=
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 479999999999776666432 0 137888988642
Q ss_pred ---------CCeEEEcCCCCCCCCC-------CceeEEEcccchhhh------CHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 131 ---------LPLVSRADPHNLPFFD-------EAFDVAFTAHLAEAL------FPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 131 ---------~~~~~~~d~~~~~~~~-------~~fD~V~~~~~~~~~------~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
.+.|.+.|+-....++ .+.|+|..-.....+ .-.+++..+-..++||-.++ +++..+
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLL-VvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLL-VVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEE-EEcCCC
Confidence 1226677766654221 235555544333333 13678999999999988877 666555
Q ss_pred ccc
Q 027039 189 GRE 191 (229)
Q Consensus 189 ~~~ 191 (229)
.|+
T Consensus 246 SYS 248 (315)
T PF11312_consen 246 SYS 248 (315)
T ss_pred Cch
Confidence 443
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.011 Score=44.46 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=29.4
Q ss_pred eEEEEcCCCChhhHHHHhCC-CCeEEEecCCCCCCe
Q 027039 99 KVLCVSAGAGHEVMAFNSIG-VADVTGVELMDSLPL 133 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~~~~ 133 (229)
.++|||||.|..+..++..+ .++++++|+++.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 48999999999999998883 348999999988443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.017 Score=52.50 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=36.2
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~ 133 (229)
+...+..+..++|+.||+|.++.+++.. ...|+|++++++.+.
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVE 419 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcc
Confidence 3356788899999999999999999887 669999999988443
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.039 Score=45.92 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC--------------eEEEcCCCCCCC
Q 027039 80 SYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP--------------LVSRADPHNLPF 144 (229)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~--------------~~~~~d~~~~~~ 144 (229)
.+..+++.+. ..+.+..+|+|||||.-.++...... +...++|.|++...+ .+...|...-+
T Consensus 91 ~Ld~fY~~if--~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~- 167 (251)
T PF07091_consen 91 NLDEFYDEIF--GRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP- 167 (251)
T ss_dssp GHHHHHHHHC--CCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-
T ss_pred hHHHHHHHHH--hcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-
Confidence 3344444442 23467899999999999998887766 445999999998733 25566666543
Q ss_pred CCCceeEEEcccchhhh
Q 027039 145 FDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~ 161 (229)
+....|+.+.--+.+.+
T Consensus 168 ~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 168 PKEPADLALLLKTLPCL 184 (251)
T ss_dssp TTSEESEEEEET-HHHH
T ss_pred CCCCcchhhHHHHHHHH
Confidence 35789999987555544
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.044 Score=47.79 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=58.9
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcC-CCCCCCCCCceeEEEcccchh
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP---------LVSRAD-PHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d-~~~~~~~~~~fD~V~~~~~~~ 159 (229)
...+|+.+|+=+|+|. |..+..++.. | .+|+++|.+++.. .++.+. .....--.+.||+|+....
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 4568999999999982 5788888885 8 5999999998832 244433 1111111234999987432
Q ss_pred hhCHHHHHHHHHhccccCcEEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...+....+.||+||+++++
T Consensus 239 ----~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 ----PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ----hhhHHHHHHHHhcCCEEEEE
Confidence 45677788999999998854
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.062 Score=46.85 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCC----CCCCCCCCceeEEEc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADP----HNLPFFDEAFDVAFT 154 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~----~~~~~~~~~fD~V~~ 154 (229)
...+|||+|.|+|.-..++... | -.+++.++.|+. ...+...|+ ..+|. ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhh
Confidence 4556999999999887776655 3 235666666654 111222222 22332 346777776
Q ss_pred cc-chhhh--C-HHHHHHHHHhccccCcEEEEEeecCCcccHHHHH
Q 027039 155 AH-LAEAL--F-PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIV 196 (229)
Q Consensus 155 ~~-~~~~~--~-~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~ 196 (229)
.+ +.+.- . ....++.+...+.|||.++++- ......++.+.
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE-rGtp~Gf~~I~ 236 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE-RGTPAGFERIL 236 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEe-CCCchhHHHHH
Confidence 43 22211 1 2447888899999999988543 33333444333
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.038 Score=41.22 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=56.6
Q ss_pred CCeEEEcCCCC-CCCCCCceeEEEcccchhhhCH----HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 131 LPLVSRADPHN-LPFFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 131 ~~~~~~~d~~~-~~~~~~~fD~V~~~~~~~~~~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
.+.+..+|+.+ ++--+..||+|+...+....+| .++++++.+.++|||.+. +.... ..+.+.+...+|.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~--Tys~a----~~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA--TYSSA----GAVRRALQQAGFE 105 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE--ES--B----HHHHHHHHHCTEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE--Eeech----HHHHHHHHHcCCE
Confidence 34567778765 3322478999998765554454 789999999999999955 22211 4578889999998
Q ss_pred EeeeeeecCCeeEEEEEE
Q 027039 206 DAANVTVNGSNMTRILMR 223 (229)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~ 223 (229)
++...+.|.+..++...
T Consensus 106 -v~~~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 106 -VEKVPGFGRKREMLRAV 122 (124)
T ss_dssp -EEEEE-STTSSEEEEEE
T ss_pred -EEEcCCCCCcchheEEE
Confidence 67888888885655544
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.021 Score=41.38 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=26.8
Q ss_pred ceeEEEcccchh--hhC-----HHHHHHHHHhccccCcEEEEEeec
Q 027039 148 AFDVAFTAHLAE--ALF-----PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 148 ~fD~V~~~~~~~--~~~-----~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.||+|+|-.+.. |++ ...+++.+++.|+|||.+++--..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 489999974332 221 367999999999999998876544
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.2 Score=36.39 Aligned_cols=126 Identities=9% Similarity=0.058 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe----------------EEEcCCCCCCCC-CCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL----------------VSRADPHNLPFF-DEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~-~~~fD~V~~~~ 156 (229)
+.+.++.||||-.++++.++.+. .+..+++.|+++.+.+ +..+|... ++. +..+|.|+...
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d~~d~ivIAG 93 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELEDEIDVIVIAG 93 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccCCcCEEEEeC
Confidence 56677999999999999999988 6778999999998433 44555532 233 44799988754
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh--cCceeEeeeeeecCCeeEEEEEEecc
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR--TSRFVDAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (229)
+... --.+++++-.+-|+.==+++ .-+... ...+.+... ++.+....-+...|.-..+++..+..
T Consensus 94 MGG~-lI~~ILee~~~~l~~~~rlI-LQPn~~---~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~~ 160 (226)
T COG2384 94 MGGT-LIREILEEGKEKLKGVERLI-LQPNIH---TYELREWLSANSYEIKAETILEEDGKIYEILVVEKSS 160 (226)
T ss_pred CcHH-HHHHHHHHhhhhhcCcceEE-ECCCCC---HHHHHHHHHhCCceeeeeeeecccCeEEEEEEEecCC
Confidence 4431 12455666666555332333 344333 344555444 33333333345567766777666653
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.19 Score=43.89 Aligned_cols=64 Identities=8% Similarity=-0.122 Sum_probs=36.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC------------C-----CCeEEEecCCCCC----------------------Ce
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI------------G-----VADVTGVELMDSL----------------------PL 133 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~------------g-----~~~v~~vD~s~~~----------------------~~ 133 (229)
......+|+|+||.+|..+..+... + .-+|.--|.-..- +.
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3356678999999999888775422 1 0166666765541 11
Q ss_pred EEEcCCCCCCCCCCceeEEEccc
Q 027039 134 VSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 134 ~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
-+-+.+.+.-||+++.|++++.+
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~ 115 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSY 115 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES
T ss_pred ecCchhhhccCCCCceEEEEEec
Confidence 34456666668899999999973
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.34 Score=37.95 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=72.0
Q ss_pred EEcCCCChhhHHHHhC-C-CCeEEEecCCCC--------------------CCe-EEEcCCCCCC----CCCCceeEEEc
Q 027039 102 CVSAGAGHEVMAFNSI-G-VADVTGVELMDS--------------------LPL-VSRADPHNLP----FFDEAFDVAFT 154 (229)
Q Consensus 102 DiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~--------------------~~~-~~~~d~~~~~----~~~~~fD~V~~ 154 (229)
-||=|.=.++.+|++. + ...++++-.... .+. ....|+.++. ...+.||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 3566666677777776 4 457777755544 011 3334666543 35689999999
Q ss_pred c--cchhh-----------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 155 A--HLAEA-----------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 155 ~--~~~~~-----------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
| |+... . -...+++.+.++|+++|.+.+.......|+.=.+.++-+..++.-++.+
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEe
Confidence 8 44410 1 1267889999999999998877777666655566777777777766654
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.11 Score=45.03 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=53.5
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEc---CCCCCCCCCCceeEEEcccchh
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRA---DPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~---d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
..++.+||-.|+|. |..+..++.. |..+|+++|.+++..+ ++.. +..+.....+.+|+|+-.. .
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~-G- 244 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS-G- 244 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-C-
Confidence 35788999999864 6666667766 7767999998866222 1111 1111111123588887532 1
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEe
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
....++...+.+++||+++++-
T Consensus 245 ---~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 245 ---HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ---CHHHHHHHHHHhhcCCEEEEEc
Confidence 1245677888999999988553
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.18 Score=43.56 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=60.8
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe--------EEEcCCC-C-C---------CCCCCc
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL--------VSRADPH-N-L---------PFFDEA 148 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~--------~~~~d~~-~-~---------~~~~~~ 148 (229)
.+...+.+++||-+|+|+ |..+...++. |..+|+.+|+++..++ ...-+.. + . ...+..
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccC
Confidence 355679999999999998 7777777776 9999999999988443 1111111 1 0 122345
Q ss_pred eeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 149 fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+|+.+..... +..++.....+|+||.++ .+..
T Consensus 243 ~d~~~dCsG~-----~~~~~aai~a~r~gGt~v-lvg~ 274 (354)
T KOG0024|consen 243 PDVTFDCSGA-----EVTIRAAIKATRSGGTVV-LVGM 274 (354)
T ss_pred CCeEEEccCc-----hHHHHHHHHHhccCCEEE-Eecc
Confidence 7877754322 345666788899999955 4444
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.043 Score=45.71 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=32.9
Q ss_pred cCCCCC--eEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 93 LLFNHS--KVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 93 ~~~~~~--~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
.++++. +|||.-+|+|..++.++..|+ +|+++|-++.
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~ 121 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPV 121 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHH
Confidence 446766 899999999999999999998 6999999876
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.24 Score=44.03 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=15.4
Q ss_pred CCCeEEEEcCCCChhhHHH
Q 027039 96 NHSKVLCVSAGAGHEVMAF 114 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l 114 (229)
...+|+|+|||+|..+..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred cceeEEEecCCCCccHHHH
Confidence 3668999999999777654
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.03 Score=46.25 Aligned_cols=66 Identities=27% Similarity=0.330 Sum_probs=41.8
Q ss_pred cCCCC--CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------------------------CCeEEEcCCCC-CCCC
Q 027039 93 LLFNH--SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------------------LPLVSRADPHN-LPFF 145 (229)
Q Consensus 93 ~~~~~--~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------------------~~~~~~~d~~~-~~~~ 145 (229)
.++++ .+|||.-+|-|..+..++..|+ +|+++|-|+. .++++++|..+ ++.+
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~ 148 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP 148 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc
Confidence 33554 3899999999999999998887 8999999976 24588898887 5556
Q ss_pred CCceeEEEcccchh
Q 027039 146 DEAFDVAFTAHLAE 159 (229)
Q Consensus 146 ~~~fD~V~~~~~~~ 159 (229)
+++||+|...-+..
T Consensus 149 ~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 149 DNSFDVVYFDPMFP 162 (234)
T ss_dssp SS--SEEEE--S--
T ss_pred CCCCCEEEECCCCC
Confidence 78999999874433
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.13 Score=44.11 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccc--CCCCCeEEEEcCCCChhhHHHH-hC-CCCeEEEecCCCC-----------------CCeEEEcCC
Q 027039 81 YAHFFKHLQGKSL--LFNHSKVLCVSAGAGHEVMAFN-SI-GVADVTGVELMDS-----------------LPLVSRADP 139 (229)
Q Consensus 81 ~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~l~-~~-g~~~v~~vD~s~~-----------------~~~~~~~d~ 139 (229)
|-+++..++.... ....-++||||+|....---|. .. ++ +++|+|+++. .+.+++..-
T Consensus 85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 3444555544321 1235689999999875433333 33 66 9999999976 233433321
Q ss_pred C-C----CCCCCCceeEEEccc-chhhh----------------------CH-----------------HHHHHHHHh-c
Q 027039 140 H-N----LPFFDEAFDVAFTAH-LAEAL----------------------FP-----------------SRFVGEMER-T 173 (229)
Q Consensus 140 ~-~----~~~~~~~fD~V~~~~-~~~~~----------------------~~-----------------~~~l~~~~~-~ 173 (229)
. . +.-+++.||+.+||- +.... .| .+|+.+|.+ .
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES 243 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKES 243 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHH
T ss_pred ccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHH
Confidence 1 1 112346899999981 10000 00 123333332 1
Q ss_pred cc-cCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee-cCCeeEEEE
Q 027039 174 VK-IGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV-NGSNMTRIL 221 (229)
Q Consensus 174 Lk-pgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~ 221 (229)
+. ..-..++.+--....+..++...+++.+...+..++- .|...+.++
T Consensus 244 ~~~~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e~~QG~t~rw~l 293 (299)
T PF05971_consen 244 LQLKDQVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTEMCQGQTKRWIL 293 (299)
T ss_dssp HHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEEEETTEEEEEE
T ss_pred HHhCCCcEEEeecccCcccHHHHHHHHHhcCCceEEEEEccCCceEEEEE
Confidence 21 1234444444466778889999998877666555432 466655554
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.19 Score=46.14 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=62.9
Q ss_pred CCeEEEEcCCCChhhHHHHh---C--CCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 97 HSKVLCVSAGAGHEVMAFNS---I--GVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~---~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
...|.-+|+|-|.+..+..+ . ..-++++++-+|.. +.++.+|+..++.+..+.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 45688999999987766432 2 22389999999883 348889999998656899999984
Q ss_pred chhhh-C---HHHHHHHHHhccccCcEEE
Q 027039 157 LAEAL-F---PSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 157 ~~~~~-~---~~~~l~~~~~~LkpgG~li 181 (229)
+...+ + -.+.+..+.+.|||+|..+
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 22222 2 2679999999999999854
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.13 Score=37.28 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD 129 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~ 129 (229)
++...-.|||||.|.+..-|.+.|+ .=.|+|.-.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 4677899999999999999998876 556888654
|
; GO: 0008168 methyltransferase activity |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.086 Score=46.26 Aligned_cols=88 Identities=17% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEE---------EcCCCC-C-----CCCC-CceeEEEcc
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVS---------RADPHN-L-----PFFD-EAFDVAFTA 155 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~---------~~d~~~-~-----~~~~-~~fD~V~~~ 155 (229)
..++.+|+=+|||+ |..+..+++. |..+|+.+|.++..++.. .....+ . .... ..+|+++-.
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 34555999999998 8888888877 888999999998844421 111110 0 0111 268988853
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.- -...+..+.+.++|||.++++--.
T Consensus 246 ~G-----~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 246 VG-----SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CC-----CHHHHHHHHHHhcCCCEEEEEecc
Confidence 21 234788999999999998855433
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.21 Score=42.56 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCCC--CCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHNL--PFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~V 152 (229)
....++|-||.|.|......... ...++.-+|+... .+..+.||...+ ....++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 66789999999999988877766 5667888888765 233566665442 1336899999
Q ss_pred Eccc---c--hhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAH---L--AEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~---~--~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+... + ...++...+++-+.+.||+||.++..-
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9752 1 112245678899999999999977443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.2 Score=46.23 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCCCC-----------CC---------
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADPHN-----------LP--------- 143 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~~~-----------~~--------- 143 (229)
..++.+|+=+|+|. |..+...+.. |. +|+++|.++.. .++...+..+ ..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 35799999999997 8788777776 87 89999999762 2233222211 00
Q ss_pred -CCC--CceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 144 -FFD--EAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 144 -~~~--~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+.+ +.+|+|+........ .|.-+.+++.+.+||||.++.+.-
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 368999975433222 343445999999999999875543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.097 Score=39.15 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=51.8
Q ss_pred hhHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------EEEcC----C
Q 027039 72 KSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------VSRAD----P 139 (229)
Q Consensus 72 ~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------~~~~d----~ 139 (229)
.-|+....++..+ --.+.+|+|||++-|.-++.++-+|...|+++++++...+ +...| .
T Consensus 13 ~ywrey~~~Y~~i---------dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~ 83 (156)
T PHA01634 13 DYWREYPHAYGML---------NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK 83 (156)
T ss_pred hHHHHHHHHhhhe---------eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeec
Confidence 3466555554432 1368899999999999999999999999999999987322 11111 1
Q ss_pred CCCCCCCCceeEEEcc
Q 027039 140 HNLPFFDEAFDVAFTA 155 (229)
Q Consensus 140 ~~~~~~~~~fD~V~~~ 155 (229)
.+++-.-+.||+.+..
T Consensus 84 ~eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 84 GEWNGEYEDVDIFVMD 99 (156)
T ss_pred ccccccCCCcceEEEE
Confidence 2344445788888764
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.36 Score=42.73 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=60.7
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcCCCC-C-----CC-CCCceeEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP---------LVSRADPHN-L-----PF-FDEAFDVA 152 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d~~~-~-----~~-~~~~fD~V 152 (229)
...+.++.+||.+|||. |..+..+++. |..+++++|.+++.. .++...-.+ . .+ .+..+|+|
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 34567889999999988 8888888877 765799998876522 122111110 0 11 12368988
Q ss_pred Ecccchh----------------hhCHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAHLAE----------------ALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~~~~----------------~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+-..-.+ +-++...+.++.+.++|+|+++.+-
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 8642111 0134567899999999999988653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.14 Score=39.01 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=39.0
Q ss_pred eEEEecCCCCC----------------CeEEEcCCCCCC--CCCCceeEEEcc--cchh---hh--CH---HHHHHHHHh
Q 027039 121 DVTGVELMDSL----------------PLVSRADPHNLP--FFDEAFDVAFTA--HLAE---AL--FP---SRFVGEMER 172 (229)
Q Consensus 121 ~v~~vD~s~~~----------------~~~~~~d~~~~~--~~~~~fD~V~~~--~~~~---~~--~~---~~~l~~~~~ 172 (229)
+|+|.|+.++. +.+++.+=+++. .+++++|+++-| ++.. .. .+ ..+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 47788887662 334444333332 223589999988 2221 11 23 567889999
Q ss_pred ccccCcEEEEEeecCCc
Q 027039 173 TVKIGGVCMVLMEECAG 189 (229)
Q Consensus 173 ~LkpgG~lil~~~~~~~ 189 (229)
.|+|||.+.+++....+
T Consensus 81 lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HEEEEEEEEEEE--STC
T ss_pred hhccCCEEEEEEeCCCC
Confidence 99999999988766443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.6 Score=34.23 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCCCh-hhHHHHhCCCCeEEEecCCCCC----CeEEEcCCCCCCCC-CCceeEEEcccchhhhCHHHHHH
Q 027039 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDSL----PLVSRADPHNLPFF-DEAFDVAFTAHLAEALFPSRFVG 168 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~-~~~~l~~~g~~~v~~vD~s~~~----~~~~~~d~~~~~~~-~~~fD~V~~~~~~~~~~~~~~l~ 168 (229)
...++|.+||.|-=. .+..|++.|+ +++++|+++.. +.+...|+.+.... -...|+|.|-. .|.++..
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppEl~~ 85 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYSIR-----PPPELQS 85 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccccCcccceEEEccCCCccHHHhhCccceeecC-----CCHHHHH
Confidence 345599999999753 5566778898 99999999873 44888888874321 24567777621 2556666
Q ss_pred HHHhccccCc-EEEEEeecCC
Q 027039 169 EMERTVKIGG-VCMVLMEECA 188 (229)
Q Consensus 169 ~~~~~LkpgG-~lil~~~~~~ 188 (229)
.+.++-+.=| .++ .++-.+
T Consensus 86 ~ildva~aVga~l~-I~pL~G 105 (129)
T COG1255 86 AILDVAKAVGAPLY-IKPLTG 105 (129)
T ss_pred HHHHHHHhhCCCEE-EEecCC
Confidence 6666655433 433 444433
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.17 Score=43.52 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=47.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCC-----CCCCceeEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLP-----FFDEAFDVA 152 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~-----~~~~~fD~V 152 (229)
..+++..++|.-+|.|..+.++++. +.++|+|+|.++.. +.+++++..++. ...+++|.|
T Consensus 17 ~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgI 96 (305)
T TIGR00006 17 NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGI 96 (305)
T ss_pred CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEE
Confidence 4478889999999999999999987 55799999999862 346666665532 123568888
Q ss_pred Ecc
Q 027039 153 FTA 155 (229)
Q Consensus 153 ~~~ 155 (229)
+..
T Consensus 97 l~D 99 (305)
T TIGR00006 97 LVD 99 (305)
T ss_pred EEe
Confidence 875
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.7 Score=36.12 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------CCeEEEcCCCC-CCC-CCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------LPLVSRADPHN-LPF-FDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------~~~~~~~d~~~-~~~-~~~~fD~V~~~~~ 157 (229)
-.|.+||.+|-..- .+++++-. ...+|+.+|+++. .++..+.|+.+ +|- -.++||++++.-.
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 46899999996543 33333332 3459999999976 45577778776 442 2489999999621
Q ss_pred hhhhCHHHHHHHHHhccccCc-EEEEEeecCC--cccHHHHHHHHhcCceeEeeee
Q 027039 158 AEALFPSRFVGEMERTVKIGG-VCMVLMEECA--GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG-~lil~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
.-..-..-|+.+....||..| ..++...... .....++++.+-..+++-..-+
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHH
Confidence 110113457788888888766 5555554433 2234567777777777655444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.18 Score=47.00 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=66.6
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CC-CeEEEecCCCCCCe----EEEcCCCC----CC----CCCCce
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDSLPL----VSRADPHN----LP----FFDEAF 149 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~-~~v~~vD~s~~~~~----~~~~d~~~----~~----~~~~~f 149 (229)
+++.-....++.++..|||+||.+|.+.+..++. |. +-|+|+|+.|..+- ..+.|+.. .+ ...-..
T Consensus 32 LlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 32 LLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred HHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 3333344567899999999999999999888776 43 47999999876221 22233321 11 112244
Q ss_pred eEEEcc---c--chhhhC-------HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHH
Q 027039 150 DVAFTA---H--LAEALF-------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (229)
Q Consensus 150 D~V~~~---~--~~~~~~-------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~ 197 (229)
|+|+.. + ..|..+ ....+.-+...|+.||.+ ++..+...+...+..
T Consensus 112 dvVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f--vtkvfrs~dy~~ll~ 169 (780)
T KOG1098|consen 112 DVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF--VTKVFRSEDYNGLLR 169 (780)
T ss_pred cEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc--ccccccCCcchHHHH
Confidence 888764 1 122111 134556667788999994 454444444444433
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.29 Score=40.32 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=43.1
Q ss_pred EEEcCCCCC--CCCCCceeEEEcc--cch-------h------hh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHH
Q 027039 134 VSRADPHNL--PFFDEAFDVAFTA--HLA-------E------AL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQI 195 (229)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~V~~~--~~~-------~------~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l 195 (229)
+..+|..+. .++++++|+|++. +.. . .. ...+.+.++.|+|||||.+++.... .....+
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~---~~~~~~ 80 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW---NRVDRF 80 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---ccHHHH
Confidence 445565442 3567788888876 210 0 00 1357889999999999988754432 223445
Q ss_pred HHHHhcCceeEe
Q 027039 196 VELFRTSRFVDA 207 (229)
Q Consensus 196 ~~l~~~~~~~~~ 207 (229)
...+.+.+|.-.
T Consensus 81 ~~al~~~GF~l~ 92 (227)
T PRK13699 81 MAAWKNAGFSVV 92 (227)
T ss_pred HHHHHHCCCEEe
Confidence 566677676533
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.41 Score=39.07 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC---CCCeEEEecCCCC
Q 027039 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDS 130 (229)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---g~~~v~~vD~s~~ 130 (229)
.+++++..+....-+.+-++.|-+||+|++.-.+.-. ....|+|.|++++
T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~ 88 (246)
T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDED 88 (246)
T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HH
T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHH
Confidence 3566665554444466778999999999987665433 3568999999987
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.3 Score=42.61 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=72.4
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC------------------------CeEEEcCCCCCCC-C
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL------------------------PLVSRADPHNLPF-F 145 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~------------------------~~~~~~d~~~~~~-~ 145 (229)
.+..++|.-|.|-=.|||.+....+..|. -|+|.||+-.+ +.+..+|..+.|+ .
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 35669999999999999999999888886 99999998552 3377788887664 3
Q ss_pred CCceeEEEcc---cch----------------------hhh--C-------HHHHHHHHHhccccCcEEEEEeecC
Q 027039 146 DEAFDVAFTA---HLA----------------------EAL--F-------PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 146 ~~~fD~V~~~---~~~----------------------~~~--~-------~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
+..||.|+|. .+- +.. . ...++.-..+.|..||++++..+..
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 5689999997 010 000 0 1356788889999999999887753
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.37 Score=45.98 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHh-------C-C-----CCeEEEecCCCC-------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNS-------I-G-----VADVTGVELMDS------------------------------- 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~-------~-g-----~~~v~~vD~s~~------------------------------- 130 (229)
+..-+|+|+|-|+|.......+ . + .-+++++|..+-
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3457899999999975555431 1 1 237888886441
Q ss_pred ------------CCeEEEcCCCC-CCCCCCceeEEEcccchhhhCH----HHHHHHHHhccccCcEEEEEeecCCcccHH
Q 027039 131 ------------LPLVSRADPHN-LPFFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIK 193 (229)
Q Consensus 131 ------------~~~~~~~d~~~-~~~~~~~fD~V~~~~~~~~~~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~ 193 (229)
.+....+|+.+ ++-.+..||+++...+.-..+| .++++++.+.++|||.+.-.+. -.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~------a~ 209 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS------AG 209 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh------HH
Confidence 01144456554 2212356999998755544444 7899999999999999763322 23
Q ss_pred HHHHHHhcCceeEeeeeeecCCe
Q 027039 194 QIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 194 ~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
.+..-+...+|. ++...+.|.+
T Consensus 210 ~vr~~l~~~GF~-v~~~~~~g~k 231 (662)
T PRK01747 210 FVRRGLQEAGFT-VRKVKGFGRK 231 (662)
T ss_pred HHHHHHHHcCCe-eeecCCCchh
Confidence 466667777774 3355555555
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.16 Score=43.29 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=37.7
Q ss_pred CeEEEcCCCCC--CCCCCceeEEEcc--cch--------------hhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 132 PLVSRADPHNL--PFFDEAFDVAFTA--HLA--------------EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 132 ~~~~~~d~~~~--~~~~~~fD~V~~~--~~~--------------~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
-.++++|..+. .+++++||+|+++ +.. .+. ...+.+.++.++|||||.+++....
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 34666776663 3567889999986 211 011 1357889999999999999976544
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.79 Score=40.28 Aligned_cols=92 Identities=20% Similarity=0.164 Sum_probs=59.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCC-----CCeEEEecCCCCC---------------CeEEEcCCCCCC---------
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIG-----VADVTGVELMDSL---------------PLVSRADPHNLP--------- 143 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g-----~~~v~~vD~s~~~---------------~~~~~~d~~~~~--------- 143 (229)
.++|+.+|||+++-+|.-+..+.+.. .+.|.+=|.++.. +.+...|+...|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 45899999999999999998887662 2368888888761 112233332222
Q ss_pred CCCCceeEEEcc-------------cchhh-------h----CHHHHHHHHHhccccCcEEEEEe
Q 027039 144 FFDEAFDVAFTA-------------HLAEA-------L----FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 144 ~~~~~fD~V~~~-------------~~~~~-------~----~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+...||-|++. .+... . -...++.+-.+.||+||.++-.+
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 233579999875 11110 0 01467888999999999966443
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.35 E-value=1 Score=38.46 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=56.5
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCC--------eEEEcCCCCC------CCCCCceeEEE
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLP--------LVSRADPHNL------PFFDEAFDVAF 153 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~--------~~~~~d~~~~------~~~~~~fD~V~ 153 (229)
....++++.+||..|+|. |..+..++.. |. +|++++.++... ..+..+-... ....+.+|+++
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 344568889999988764 7777777776 76 788998876522 1111111110 12345789888
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...- ....++++.+.|+++|.++..
T Consensus 238 d~~g-----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 238 DFVG-----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ECCC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 5321 234678889999999998855
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.13 Score=39.52 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
++..+.+|+|+|.|....+.+..|....+|+++++-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpw 106 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPW 106 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHH
Confidence 566899999999999999988888668999999876
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.64 Score=34.67 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=37.4
Q ss_pred CCCCeEEEEcCCCCh-hhHHHHhCCCCeEEEecCCCC----CCeEEEcCCCCCCCC-CCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGH-EVMAFNSIGVADVTGVELMDS----LPLVSRADPHNLPFF-DEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~-~~~~l~~~g~~~v~~vD~s~~----~~~~~~~d~~~~~~~-~~~fD~V~~~~ 156 (229)
....+|+|||-|.-. .+..|.+.|+ +|+++|+.+. .+.++..|+.+.... -...|+|.|..
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeC
Confidence 455699999999864 5555666797 9999999998 677888888874321 24789998843
|
; PDB: 2K4M_A. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.46 Score=40.68 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEEEc----CCCCCCCCCCceeEEEcccchhhhCHHHHHH
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVSRA----DPHNLPFFDEAFDVAFTAHLAEALFPSRFVG 168 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~~~----d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~ 168 (229)
.++.++|-+|||. |..+..+++. |...+.++|.++...+.... |..+. ....+|+|+-..- -...+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G-----~~~~~~ 215 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASG-----DPSLID 215 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCC-----CHHHHH
Confidence 4577899999875 7777777766 87668888877654332111 11110 1246888885321 123567
Q ss_pred HHHhccccCcEEEEEe
Q 027039 169 EMERTVKIGGVCMVLM 184 (229)
Q Consensus 169 ~~~~~LkpgG~lil~~ 184 (229)
.+.+.+++||+++++-
T Consensus 216 ~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 216 TLVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHHhhhcCcEEEEEe
Confidence 7888999999988543
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.6 Score=35.56 Aligned_cols=91 Identities=19% Similarity=0.130 Sum_probs=56.2
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC-------CCCCceeEEE
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP-------FFDEAFDVAF 153 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~-------~~~~~fD~V~ 153 (229)
....+.++.+||..|+|+ |.....++.. |. ++++++.++...+. ...+..+.. ...+.+|+++
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 334457899999999996 6666666665 74 89999887542211 011111111 1235789988
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
...-. ...+..+.+.++++|.++.....
T Consensus 207 ~~~~~-----~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 207 DAVGG-----PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred ECCCC-----HHHHHHHHHhcccCCEEEEEccC
Confidence 64211 14567778889999998865544
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.19 Score=41.11 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCC----CCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHN----LPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~----~~~~~~~fD~V~~~ 155 (229)
....|+|.-||.|..+...+..+. .|+++|+++. .+.|++||+.+ +.+....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 567899999999999999999976 9999999987 45599999876 34555668888876
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.33 Score=41.20 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=45.4
Q ss_pred eEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------eEEEcCCCCCCCC--CCceeEEEcc
Q 027039 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFF--DEAFDVAFTA 155 (229)
Q Consensus 99 ~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------~~~~~d~~~~~~~--~~~fD~V~~~ 155 (229)
+++|+-||.|.....+.+.|+..+.++|+++... .++.+|+.++... ...+|+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeC
Confidence 6899999999999999888987889999998622 2567788776432 3579999986
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.67 Score=40.27 Aligned_cols=88 Identities=10% Similarity=-0.001 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHh--CCCCeEEEecCCCCCCeEEE-cCCC-CC-CCCC-CceeEEEcccchhhhCHHHH
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNS--IGVADVTGVELMDSLPLVSR-ADPH-NL-PFFD-EAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~--~g~~~v~~vD~s~~~~~~~~-~d~~-~~-~~~~-~~fD~V~~~~~~~~~~~~~~ 166 (229)
.+++.+||-+|||. |..+..++. .|..+|+++|.+++..++.. .+.. .. .+.+ ..+|+|+-.. .. ..-...
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~-G~-~~~~~~ 238 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECV-GG-RGSQSA 238 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECC-CC-CccHHH
Confidence 47899999999875 556555554 25558999998876443211 1110 00 1111 2478887421 11 002346
Q ss_pred HHHHHhccccCcEEEEE
Q 027039 167 VGEMERTVKIGGVCMVL 183 (229)
Q Consensus 167 l~~~~~~LkpgG~lil~ 183 (229)
+.+..+.+++||+++++
T Consensus 239 ~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 239 INQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHHhCcCCcEEEEE
Confidence 78888999999998854
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.4 Score=37.30 Aligned_cols=82 Identities=12% Similarity=0.010 Sum_probs=58.0
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhhC
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF 162 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~ 162 (229)
...+.+++...|+|+-+|.++-.|.+++- .|+++|.-+- .++....|...........|-.+|.-+..
T Consensus 206 ~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVEk--- 281 (358)
T COG2933 206 DKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVEK--- 281 (358)
T ss_pred hhhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhcC---
Confidence 34458999999999999999999999976 9999997654 33455556555432356788888864444
Q ss_pred HHHHHHHHHhcccc
Q 027039 163 PSRFVGEMERTVKI 176 (229)
Q Consensus 163 ~~~~l~~~~~~Lkp 176 (229)
|.+.-+.|...|..
T Consensus 282 P~rv~~li~~Wl~n 295 (358)
T COG2933 282 PARVAALIAKWLVN 295 (358)
T ss_pred cHHHHHHHHHHHHc
Confidence 65555555555544
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=89.65 E-value=12 Score=31.71 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHh-cccCCCCCeEEEEcCCCCh---hh-HHHHhC-CC-CeEEEecCCCC---CCeEEEcCCCCCCCCCC
Q 027039 78 VTSYAHFFKHLQG-KSLLFNHSKVLCVSAGAGH---EV-MAFNSI-GV-ADVTGVELMDS---LPLVSRADPHNLPFFDE 147 (229)
Q Consensus 78 ~~~~~~~~~~l~~-~~~~~~~~~vLDiG~G~G~---~~-~~l~~~-g~-~~v~~vD~s~~---~~~~~~~d~~~~~~~~~ 147 (229)
+.-|.++.+.+.. ......+++||.+|+|+-. .+ .-|.+. |. .-++-.|+.+- ....+.+|-+.... +.
T Consensus 42 V~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~-~~ 120 (299)
T PF06460_consen 42 VAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMP-PD 120 (299)
T ss_dssp HHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEE-SS
T ss_pred HHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCC-CC
Confidence 4455666665532 2234678999999999832 22 334444 43 24555565543 44466788777654 57
Q ss_pred ceeEEEcccc-------hhhh-CH----HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 148 AFDVAFTAHL-------AEAL-FP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 148 ~fD~V~~~~~-------~~~~-~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
+||+|++.-. .... .. .-+..-+...|+-||.+++=+.+..- ..++.++.+....-..-.-....|
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw--~~~Lyel~~~F~~wt~FcT~VNtS 198 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW--NAQLYELMGYFSWWTCFCTAVNTS 198 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS----HHHHHHHTTEEEEEEEEEGGGTT
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc--cHHHHHHHhhcccEEEEecccCcc
Confidence 9999999622 1111 12 33456667789999998887776443 366778877666665555444444
Q ss_pred e
Q 027039 216 N 216 (229)
Q Consensus 216 ~ 216 (229)
+
T Consensus 199 S 199 (299)
T PF06460_consen 199 S 199 (299)
T ss_dssp S
T ss_pred c
Confidence 4
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.41 E-value=2.1 Score=37.36 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=53.9
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----C-CCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----P-FFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~-~~~~~fD~V~ 153 (229)
...++++.+||-.|+|. |..+..+++. |..+|+++|.++...+ ++...-.+. . .....+|+|+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 34568899999998765 5666666666 7756999988765322 111111110 0 1123588887
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
-.. . -...+.+..+.+++||+++++
T Consensus 251 d~~-g----~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 251 DAV-G----RPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ECC-C----CHHHHHHHHHHhccCCEEEEE
Confidence 521 1 123566778899999998754
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.7 Score=40.08 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C----CCeEEEecCCCCC----------------CeEEEcCCCCCC-C----CCCc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G----VADVTGVELMDSL----------------PLVSRADPHNLP-F----FDEA 148 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g----~~~v~~vD~s~~~----------------~~~~~~d~~~~~-~----~~~~ 148 (229)
.+..+|.|-.||+|.......+. + ...++|.|+++.. ....++|...-| + ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 56779999999999766665443 2 2478999987661 123334433333 2 3367
Q ss_pred eeEEEcc--cc--hh----------------h-h----CH-HHHHHHHHhccccCcEEEEEeec
Q 027039 149 FDVAFTA--HL--AE----------------A-L----FP-SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 149 fD~V~~~--~~--~~----------------~-~----~~-~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
||+|++| +. .+ . . .. ..+++.+...|+|||+..+++..
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 9999998 10 00 0 0 01 56889999999999987777665
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.8 Score=39.17 Aligned_cols=122 Identities=17% Similarity=0.111 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHh-CCCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~-~g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
-.+.+|+=+|+|. |......+. .|. +|+.+|.++.... +...+..+. -...|+|+... . ...+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~v~~l~ea---l~~aDVVI~aT--G---~~~v 280 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFRVMTMEEA---AELGDIFVTAT--G---NKDV 280 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCEecCHHHH---HhCCCEEEECC--C---CHHH
Confidence 4789999999986 433333333 377 8999998876321 111111111 13679988632 1 1234
Q ss_pred HH-HHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc--eeEeeeeeecCCeeEEEEEEecc
Q 027039 167 VG-EMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR--FVDAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 167 l~-~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 226 (229)
+. +..+.+|+|+.++..-....+-+...+.+.-...+ -..+..++.++.+ +++++-.++
T Consensus 281 I~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~-~i~lLa~Gr 342 (425)
T PRK05476 281 ITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDGK-RIILLAEGR 342 (425)
T ss_pred HHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCCCC-EEEEEeCCc
Confidence 54 67889999998774444444445555554321222 1224445555544 566665544
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=89.03 E-value=2 Score=37.67 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=54.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----CCCCCceeEEEc
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----PFFDEAFDVAFT 154 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~~~~~~fD~V~~ 154 (229)
...++++.+||=.|+|. |..+..+++. |...|+++|.++...+ ++..+-.+. ....+.+|+|+-
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 34568899999999865 5666666666 7657999998765322 111111110 011235888885
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.. . ....+....+.+++||+++++
T Consensus 266 ~~-G----~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 266 MA-G----SVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CC-C----ChHHHHHHHHHHhcCCEEEEE
Confidence 21 1 124567778899999998754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.75 E-value=0.88 Score=38.32 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=39.8
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-C-----CCeEEEecCCCC
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-----VADVTGVELMDS 130 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g-----~~~v~~vD~s~~ 130 (229)
++++.++...+.++++..++|+|||.|.++..++.. + ...++.||-...
T Consensus 4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 567777777888899999999999999999999876 2 347888887644
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=88.64 E-value=3.6 Score=32.12 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----CC-eEEEcCCCC---CC-CCCCceeEEEccc-chhhhCHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----LP-LVSRADPHN---LP-FFDEAFDVAFTAH-LAEALFPS 164 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----~~-~~~~~d~~~---~~-~~~~~fD~V~~~~-~~~~~~~~ 164 (229)
.++.+|+.|||-+-.....-...+..++...|++.. .- .|+.-|.++ +| .-.++||+|++.- +...--..
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~ 103 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLT 103 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHH
Confidence 467899999999766554432234458888998865 12 377667665 22 1157999999962 11100113
Q ss_pred HHHHHHHhccccCcEEEEEeec
Q 027039 165 RFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 165 ~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+....+..++|+++++++++++
T Consensus 104 k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 104 KTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred HHHHHHHHHhCccceEEEecHH
Confidence 3445556667889999988876
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=88.47 E-value=0.82 Score=42.26 Aligned_cols=88 Identities=22% Similarity=0.259 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCCCC-----------------------
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADPHN----------------------- 141 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~~~----------------------- 141 (229)
.++.+++=+|+|. |..+...+.. |. .|+++|.++.. .+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4578999999997 6666666665 76 79999998762 2233333211
Q ss_pred CCCCCCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 142 LPFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 142 ~~~~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
++-.-..+|+|+........ .|.-+.+++.+.+|||+.++=+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 01012469999876433333 4545678889999999987744
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.98 Score=39.32 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=51.8
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCC---CCC--------CeEEEcCCCCCC----CCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELM---DSL--------PLVSRADPHNLP----FFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s---~~~--------~~~~~~d~~~~~----~~~~~fD~V~~~~ 156 (229)
.+++.+||-+|+|. |..+..+++. |. ++++++.+ +.. ...+ +..+.. ...+.+|+|+-..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc
Confidence 46789999999875 6777777776 77 89999863 321 1221 211111 0124588888632
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
- ....+.+..+.+++||+++++
T Consensus 247 g-----~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 247 G-----VPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred C-----CHHHHHHHHHHccCCcEEEEE
Confidence 1 123677888999999998744
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.62 E-value=4.1 Score=36.63 Aligned_cols=123 Identities=18% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhhCHHH
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSR 165 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~ 165 (229)
...+.+|+-+|+|. |......+.. |. +|+++|.++.... +...+.++. . ...|+|++.. . ...
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~v~~leea-l--~~aDVVItaT--G---~~~ 262 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFRVMTMEEA-A--KIGDIFITAT--G---NKD 262 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCEeCCHHHH-H--hcCCEEEECC--C---CHH
Confidence 35789999999997 5544444444 76 8999988775321 111121111 1 3468887631 1 233
Q ss_pred HH-HHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee--EeeeeeecCCeeEEEEEEecc
Q 027039 166 FV-GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV--DAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 166 ~l-~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 226 (229)
++ .+....+|+|+.++..-....+-+...+.+.....+.+ .+..+..++.+ +++++-.++
T Consensus 263 vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~g~-~i~ll~~Gr 325 (406)
T TIGR00936 263 VIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKDGR-RIYLLAEGR 325 (406)
T ss_pred HHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCCCC-EEEEEeCCc
Confidence 44 35778899999877444433335666776655433322 23334454433 555555444
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=87.53 E-value=1.2 Score=39.47 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=64.8
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC------------------------CeEEEcCCCCCC
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL------------------------PLVSRADPHNLP 143 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~------------------------~~~~~~d~~~~~ 143 (229)
.+...++++..-.|+|+|-|.....++.. ++..-.|+++...+ ++.+++++.+..
T Consensus 185 ~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~ 264 (419)
T KOG3924|consen 185 VDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPK 264 (419)
T ss_pred HHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHH
Confidence 34446789999999999999999888877 67778888888762 335666655532
Q ss_pred ---CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEE
Q 027039 144 ---FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 144 ---~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~li 181 (229)
.-....++|++|++.-..+...=+.++..-+++|-+++
T Consensus 265 ~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 265 RVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred HHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEe
Confidence 22457899999865442222222347888899999855
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.44 E-value=6.2 Score=33.85 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=61.0
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCC---------CeEEE-cCCCCCC------CCCCceeEEEcccchh
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSL---------PLVSR-ADPHNLP------FFDEAFDVAFTAHLAE 159 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~---------~~~~~-~d~~~~~------~~~~~fD~V~~~~~~~ 159 (229)
++|+=+|+|. |.++..|++.|. +|+.++-+.+. +.... ++....+ -+.+.||+|+... .
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v--K 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC--K 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC--C
Confidence 5799999997 567777877776 88888876421 11111 1111111 1235799998742 2
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
..+..++++.+...+.++..++.+...- ...+.+.+.|...+
T Consensus 80 ~~~~~~al~~l~~~l~~~t~vv~lQNGv--~~~e~l~~~~~~~~ 121 (305)
T PRK05708 80 AYDAEPAVASLAHRLAPGAELLLLQNGL--GSQDAVAARVPHAR 121 (305)
T ss_pred HHhHHHHHHHHHhhCCCCCEEEEEeCCC--CCHHHHHHhCCCCc
Confidence 2235678889999999998766444332 23445666666443
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.18 E-value=2.9 Score=36.06 Aligned_cols=84 Identities=17% Similarity=0.069 Sum_probs=51.9
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCCCCCCceeEEEcccchhhhC
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLPFFDEAFDVAFTAHLAEALF 162 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~~~~~~fD~V~~~~~~~~~~ 162 (229)
..++++.+||-.|+|. |..+..+++. |. ++++++.+++..+. ...+..+. ..+.+|+++-... .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~--~~~~~d~~i~~~~----~ 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAYDT--PPEPLDAAILFAP----A 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccccc--CcccceEEEECCC----c
Confidence 4568899999999764 5555666665 76 79999887662220 01111111 1235786653211 1
Q ss_pred HHHHHHHHHhccccCcEEEEE
Q 027039 163 PSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~ 183 (229)
+ ..+....+.|++||+++++
T Consensus 234 ~-~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 234 G-GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred H-HHHHHHHHhhCCCcEEEEE
Confidence 2 3678888999999998754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=85.96 E-value=3.4 Score=35.44 Aligned_cols=83 Identities=24% Similarity=0.291 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcC---CCCCCCCCCceeEEEcccchhhh
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRAD---PHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d---~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
++.+||-.|+|. |..+..+++. |...+++++.++...+ ++..+ ........+.+|+++...-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 788999988775 6666666665 7657889887654211 11111 1111111235899886321
Q ss_pred CHHHHHHHHHhccccCcEEEEE
Q 027039 162 FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....++++.+.|+++|+++.+
T Consensus 241 -~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 241 -APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred -CHHHHHHHHHHHhcCCEEEEE
Confidence 123577888999999998854
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=85.91 E-value=2.5 Score=32.45 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------CCeEEEcCCCC-CC---CCCCceeEEEcccchhhh-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------LPLVSRADPHN-LP---FFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------~~~~~~~d~~~-~~---~~~~~fD~V~~~~~~~~~- 161 (229)
...-|||+|=|.|..--.|.+. +..+|+.+|-.-. .-.++++|+.+ ++ +...+.-++.+. +..+.
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD-~G~g~~ 106 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHAD-IGTGDK 106 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE-----S-H
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEee-cCCCCc
Confidence 4578999999999999999998 7779999987533 33488888876 33 223344444443 11111
Q ss_pred --C---HHHHHHHHHhccccCcEEE
Q 027039 162 --F---PSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 162 --~---~~~~l~~~~~~LkpgG~li 181 (229)
+ ...+-.-+..+|.|||.++
T Consensus 107 ~~d~a~a~~lspli~~~la~gGi~v 131 (160)
T PF12692_consen 107 EKDDATAAWLSPLIAPVLAPGGIMV 131 (160)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred chhHHHHHhhhHHHHHHhcCCcEEE
Confidence 1 1222345667899999954
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=5.6 Score=34.18 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCC------CCeEEE--cCCC-------CCCCCCCceeEEEcccch
Q 027039 96 NHSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDS------LPLVSR--ADPH-------NLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 96 ~~~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~------~~~~~~--~d~~-------~~~~~~~~fD~V~~~~~~ 158 (229)
..++|+=||+|. |.++..|++.|+ +|+.+..++. .+.... ++.. ..+-....+|+|+..-
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav-- 80 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGL-- 80 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEe--
Confidence 446899999996 567777777776 7777766542 111111 1100 0011135789998741
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
......++++.+...+++++.++..... -...+.+.+.|...+.+
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG--~~~~e~l~~~~~~~~v~ 125 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNG--LGVEEQLREILPAEHLL 125 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCC--CCcHHHHHHHCCCCcEE
Confidence 1112456778888889999885543332 22345566777655543
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=85.29 E-value=4.5 Score=35.66 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=53.4
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCC--C-----CCCCCceeEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHN--L-----PFFDEAFDVA 152 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~--~-----~~~~~~fD~V 152 (229)
...++++.+||=+|+|. |..+..+++. |...|+++|.+++..+ ++...-.+ + ....+.+|+|
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvv 272 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYS 272 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEE
Confidence 34568899999999865 5666666666 7657999998776322 22111100 0 0112258888
Q ss_pred EcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
+-..- ....+....+.+++| |+++++
T Consensus 273 id~~G-----~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 273 FECAG-----NVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred EECCC-----ChHHHHHHHHhhhcCCCEEEEE
Confidence 75321 124566777788886 987643
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.59 E-value=2.7 Score=34.86 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCe------------------EEEcCCCCC----CCCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL------------------VSRADPHNL----PFFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~------------------~~~~d~~~~----~~~~~~fD 150 (229)
.++.++||||.|.-..--.+.-. |+ +.+|.|+++..++ ..+.|-..+ --.++.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 46778999999987544333333 66 9999999977222 222332221 12267999
Q ss_pred EEEcc
Q 027039 151 VAFTA 155 (229)
Q Consensus 151 ~V~~~ 155 (229)
++.||
T Consensus 156 ~tlCN 160 (292)
T COG3129 156 ATLCN 160 (292)
T ss_pred eEecC
Confidence 99999
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=84.31 E-value=0.86 Score=40.54 Aligned_cols=88 Identities=26% Similarity=0.271 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC-----------------CeEEEcCCCCCC-CCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL-----------------PLVSRADPHNLP-FFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~-~~~~~fD~V~~ 154 (229)
..+.++||.=+|+|.=++..+.. +...|++-|++++. +.+.+.|+..+- ...+.||+|=.
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 34579999999999988888766 56799999999872 234455555431 24678999876
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.-+.. |..++..+.+.+|.||.+.+...
T Consensus 128 DPfGS---p~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 DPFGS---PAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp --SS-----HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCCCC---ccHhHHHHHHHhhcCCEEEEecc
Confidence 54444 88999999999999999885543
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.81 E-value=1.7 Score=36.57 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=51.5
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC------CCCCceeEEEcccch
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP------FFDEAFDVAFTAHLA 158 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~------~~~~~fD~V~~~~~~ 158 (229)
..++.+||=+|+|+ |..+..+++. |...|+++|.++...++ ...+..+.. .....+|+|+-.. .
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~-G 196 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS-G 196 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC-C
Confidence 35788999998864 5565666665 77569998877652221 001111100 0123578877521 1
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
....+++..+.++|+|+++++-
T Consensus 197 ----~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 197 ----ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ----ChHHHHHHHHHhcCCCEEEEec
Confidence 1346777889999999988554
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.81 E-value=2.5 Score=36.07 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=53.0
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC----CCCCCceeEEEcc
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL----PFFDEAFDVAFTA 155 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~----~~~~~~fD~V~~~ 155 (229)
...+.++.+||-+|+|. |..+..+++. |...+++++.+++..+ ++..+-.+. ....+.+|+++..
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 34567889999998653 5555556665 7644888877654221 111111110 1123568999863
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.- ....+.++.+.|+++|+++.+
T Consensus 234 ~~-----~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 234 TG-----VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CC-----ChHHHHHHHHHHhcCCEEEEE
Confidence 21 134677788999999998754
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.30 E-value=0.53 Score=42.86 Aligned_cols=86 Identities=23% Similarity=0.327 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCe----------------EEEcCCCCC----CCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL----------------VSRADPHNL----PFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~----------------~~~~d~~~~----~~~~~~fD~V 152 (229)
.++.+|||.=|++|.-++..+.. +..+|++-|.++..+. ..++|+..+ +-.+..||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 45678999999999999998877 7789999999988443 333443321 2235789998
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
-..-+.. +..++..+.+.++.||.+.+.
T Consensus 188 DLDPyGs---~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DLDPYGS---PSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ecCCCCC---ccHHHHHHHHHhhcCCEEEEE
Confidence 7644433 788999999999999998754
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=83.28 E-value=3.7 Score=37.60 Aligned_cols=123 Identities=10% Similarity=0.014 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCC-ChhhHHHHh-CCCCeEEEecCCCCCC-e-----EEEcCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 95 FNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLP-L-----VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 95 ~~~~~vLDiG~G~-G~~~~~l~~-~g~~~v~~vD~s~~~~-~-----~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
-.+.+|+-+|+|. |......+. .|. +|+++|.++... . +...+..+. -...|+|+...- ...-+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv~leEa---l~~ADVVI~tTG----t~~vI 323 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVLTLEDV---VSEADIFVTTTG----NKDII 323 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeeccHHHH---HhhCCEEEECCC----Cccch
Confidence 5689999999996 443333333 377 899999887521 1 111111111 135798886311 11222
Q ss_pred HHHHHhccccCcEEEEEeecCCcccHHHHHHH--Hhc-CceeEeeeeeecC-CeeEEEEEEecc
Q 027039 167 VGEMERTVKIGGVCMVLMEECAGREIKQIVEL--FRT-SRFVDAANVTVNG-SNMTRILMRRTR 226 (229)
Q Consensus 167 l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l--~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~ 226 (229)
..+..+.+|+||.++-+-.....-+...|.+. .+. .-...+..++.++ .+ +++++--++
T Consensus 324 ~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~~d~g~-~i~ll~eGr 386 (477)
T PLN02494 324 MVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTGS-GIIVLAEGR 386 (477)
T ss_pred HHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCceEEEcCCCCC-EEEEEeCCc
Confidence 36777889999998844443345556666655 221 1113333344443 33 566655554
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.64 E-value=2.2 Score=38.91 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe-------EEEcCCCC------C---------CCCCCceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------VSRADPHN------L---------PFFDEAFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~-------~~~~d~~~------~---------~~~~~~fD~ 151 (229)
..+.++|.+|-|+|.+...+... +...++++++.+.+.+ |.+.|... + .-++..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 56778999999999999888766 7669999999998554 22222100 0 124568999
Q ss_pred EEcc--cc-hhhh--CH-----HHHHHHHHhccccCcEEEEEeecCCc
Q 027039 152 AFTA--HL-AEAL--FP-----SRFVGEMERTVKIGGVCMVLMEECAG 189 (229)
Q Consensus 152 V~~~--~~-~~~~--~~-----~~~l~~~~~~LkpgG~lil~~~~~~~ 189 (229)
++.. .- .+.. .| ..++..+...|.|.|.+++..-..+.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 8864 11 2222 22 56778889999999999988777553
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.61 E-value=4.6 Score=35.35 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=49.9
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe----------EEEc-CCCCCCCCCCceeEEEcccchh
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL----------VSRA-DPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~----------~~~~-d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
..+++.+||-.|+|. |..+..+++. |. ++++++.++.... ++.. +...+.-..+.+|+|+-..-
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g-- 256 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS-- 256 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC--
Confidence 346788999999875 6666667766 76 7777776654211 1110 00011000124788774211
Q ss_pred hhCHHHHHHHHHhccccCcEEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+++..+.+++||+++.+
T Consensus 257 ---~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 257 ---AVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred ---CHHHHHHHHHHhcCCcEEEEe
Confidence 123567788999999998854
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=82.54 E-value=5.5 Score=34.18 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=51.8
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCC---C-C-CCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHN---L-P-FFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~---~-~-~~~~~fD~V~~~ 155 (229)
..++++.+||=+|+|. |..+..+++. |..+|+++|.+++..+ ++...-.+ + . .....+|+|+-.
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 3457899999998764 5555556665 7744999987765221 11111100 0 0 112368888853
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.- ....+....+.|+++|+++++
T Consensus 239 ~g-----~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 239 SG-----NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 21 123456777889999998754
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.15 E-value=2.2 Score=37.56 Aligned_cols=86 Identities=23% Similarity=0.267 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe---------------EEEcCCCCCCCC-CCceeEEEcccchh
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL---------------VSRADPHNLPFF-DEAFDVAFTAHLAE 159 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------------~~~~d~~~~~~~-~~~fD~V~~~~~~~ 159 (229)
..+|+|-=+|+|.=++.++.. +..+++.-|+|+..++ .+..|+..+-.. ...||+|=..-+.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFG- 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPFG- 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCCC-
Confidence 789999999999999998877 5558999999998433 333444432211 2567776543333
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEee
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.|..++..+.+.+|.||.+.+...
T Consensus 132 --SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 132 --SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred --CCchHHHHHHHHhhcCCEEEEEec
Confidence 378899999999999999875543
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.00 E-value=3.6 Score=39.45 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=55.3
Q ss_pred CeEEEEcCCCChhhHHHHhC----CC-CeEEEecCCCC----------------C--------CeEEEcCCCCCCCCC--
Q 027039 98 SKVLCVSAGAGHEVMAFNSI----GV-ADVTGVELMDS----------------L--------PLVSRADPHNLPFFD-- 146 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~----g~-~~v~~vD~s~~----------------~--------~~~~~~d~~~~~~~~-- 146 (229)
..|+-+|+|-|.+.....+. +. -+|+++|-++. . ++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999876554322 32 28999999954 1 467888998874321
Q ss_pred ---------CceeEEEcccchhhh-C---HHHHHHHHHhcccc----CcE
Q 027039 147 ---------EAFDVAFTAHLAEAL-F---PSRFVGEMERTVKI----GGV 179 (229)
Q Consensus 147 ---------~~fD~V~~~~~~~~~-~---~~~~l~~~~~~Lkp----gG~ 179 (229)
+++|+||+- ++..+ + -.+.|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 379999983 33222 2 25788888888886 775
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.78 E-value=3.5 Score=36.66 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~ 130 (229)
.+-..++|+|+|.|+++..++-. |. .|.+||-+..
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~ 187 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQR 187 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchH
Confidence 45678999999999999999887 66 9999999855
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.49 E-value=1.4 Score=32.10 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=47.4
Q ss_pred CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----C-CCCCceeEEEcccchhhhCHHHHHHHH
Q 027039 107 AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----P-FFDEAFDVAFTAHLAEALFPSRFVGEM 170 (229)
Q Consensus 107 ~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~-~~~~~fD~V~~~~~~~~~~~~~~l~~~ 170 (229)
-|..+..+++. | .+|+++|.++...+ ++..+-.++ . ..+..+|+|+-..- -...++..
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~~~~~~~~ 75 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----SGDTLQEA 75 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----SHHHHHHH
T ss_pred hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----cHHHHHHH
Confidence 35667777766 7 59999998876222 222222211 1 22357999885321 14678889
Q ss_pred HhccccCcEEEEEeecC
Q 027039 171 ERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 171 ~~~LkpgG~lil~~~~~ 187 (229)
...++|+|+++++-...
T Consensus 76 ~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 76 IKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHEEEEEEEEEESSTS
T ss_pred HHHhccCCEEEEEEccC
Confidence 99999999988665544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=81.33 E-value=2.6 Score=37.94 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=51.0
Q ss_pred CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchhhhCHHH
Q 027039 94 LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSR 165 (229)
Q Consensus 94 ~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~ 165 (229)
.-++.+|+=+|+|. |......+.. |. +|+.+|.++.... +...+..+. . ..+|+|+...- .+ .
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~~~~e~-v--~~aDVVI~atG----~~-~ 269 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVMTMEEA-V--KEGDIFVTTTG----NK-D 269 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEccHHHH-H--cCCCEEEECCC----CH-H
Confidence 35799999999997 6555555544 87 8999999876322 111111111 1 35798886311 22 3
Q ss_pred HHH-HHHhccccCcEEEEEe
Q 027039 166 FVG-EMERTVKIGGVCMVLM 184 (229)
Q Consensus 166 ~l~-~~~~~LkpgG~lil~~ 184 (229)
.+. +..+.+|+||.++.+-
T Consensus 270 ~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 270 IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHHHHHhcCCCCcEEEEeC
Confidence 444 4588999999987443
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=81.09 E-value=1.5 Score=35.19 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
..++..|||.=||+|..+.+..+.|- +.+|+|+++.
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~ 224 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEE 224 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHH
Confidence 47899999999999999999888876 8999999865
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.64 E-value=0.79 Score=39.29 Aligned_cols=89 Identities=15% Similarity=0.047 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCCCChhhH-HHHhCCCCeEEEecCCCCCCe----------------EEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVM-AFNSIGVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~-~l~~~g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.-.+..|.|+=+|-|+++. .+...|...|.++|.+|-.++ .+.+|-... -++...|-|...-
T Consensus 192 sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnLGL 270 (351)
T KOG1227|consen 192 SCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNLGL 270 (351)
T ss_pred ccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheeecc
Confidence 3456889999999999999 666778889999999987433 444454443 3467777777643
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.. -++-.--+..+|||.|--++++.+
T Consensus 271 lPS---se~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 271 LPS---SEQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred ccc---cccchHHHHHHhhhcCCcEEEEec
Confidence 222 233344567889997764557665
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.45 E-value=5.4 Score=34.73 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=54.1
Q ss_pred cccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCCCe----------EEEcCCC-CC-----CCCCCceeE
Q 027039 91 KSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSLPL----------VSRADPH-NL-----PFFDEAFDV 151 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~~~----------~~~~d~~-~~-----~~~~~~fD~ 151 (229)
...++++.+||=.|+ | .|..+..+++. |. ++++++.++...+ ++..+-. +. ....+.+|+
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence 345688999999998 3 47788888777 76 7888887654221 1111100 11 011235888
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+-.. . ...+....+.+++||+++++
T Consensus 232 v~d~v-G-----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 232 YFDNV-G-----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEECC-C-----HHHHHHHHHHhccCCEEEEE
Confidence 87532 1 23567788999999998754
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=80.28 E-value=8.3 Score=27.46 Aligned_cols=80 Identities=13% Similarity=-0.004 Sum_probs=49.2
Q ss_pred CCCChhhHHHHhC---CCCeEEEecCCCC--------CCeEEEcCCCCCC----CCCCceeEEEcccchhhhCHHHHHHH
Q 027039 105 AGAGHEVMAFNSI---GVADVTGVELMDS--------LPLVSRADPHNLP----FFDEAFDVAFTAHLAEALFPSRFVGE 169 (229)
Q Consensus 105 ~G~G~~~~~l~~~---g~~~v~~vD~s~~--------~~~~~~~d~~~~~----~~~~~fD~V~~~~~~~~~~~~~~l~~ 169 (229)
||.|..+..+++. +..+++.+|.+++ ...++.+|..+.. ..-...|.+++..-.. ..-..+..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d--~~n~~~~~ 81 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD--EENLLIAL 81 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH--HHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH--HHHHHHHH
Confidence 5667787777655 3348999999975 4668899988742 2235788877742111 12223445
Q ss_pred HHhccccCcEEEEEeec
Q 027039 170 MERTVKIGGVCMVLMEE 186 (229)
Q Consensus 170 ~~~~LkpgG~lil~~~~ 186 (229)
..+.+.|..++++.+..
T Consensus 82 ~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 82 LARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHTTTSEEEEEESS
T ss_pred HHHHHCCCCeEEEEECC
Confidence 55677788887755554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=80.01 E-value=3.5 Score=36.42 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=51.5
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCC--C-------CCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNL--P-------FFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~--~-------~~~~~fD~V~ 153 (229)
..++++.+||-.|+|. |..+..+++. |...++++|.++...++ ...+..+. + ...+.+|+|+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 3467899999998765 5666666665 77578899876652210 00111110 0 1122588887
Q ss_pred cccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
-..- ....+....+.+++| |+++++
T Consensus 269 d~~G-----~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 269 ECVG-----DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred ECCC-----ChHHHHHHHHhhccCCCEEEEE
Confidence 5211 123466778889998 998753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 26/138 (18%)
Query: 66 HRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIG-VADVTG 124
+ + +Q + H +KVL G G + + A++T
Sbjct: 10 YSEREALRLSEQAETLEKLLHHDTV---YPPGAKVLEAGCGIGAQTVILAKNNPDAEITS 66
Query: 125 VELMDS-------------LPLVS--RADPHNLPFFDEAFDVAFTA----HLAEALFPSR 165
+++ + V +A+ +LPF D +FD F HL P
Sbjct: 67 IDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQS---PEE 123
Query: 166 FVGEMERTVKIGGVCMVL 183
+ +++ +K GG V+
Sbjct: 124 ALKSLKKVLKPGGTITVI 141
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 21/102 (20%)
Query: 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPH-----------NLPFF 145
S + + AG G +A + G V VE S+ + +A H NL
Sbjct: 35 GSVIADIGAGTGGYSVALANQG-LFVYAVEP--SIVMRQQAVVHPQVEWFTGYAENLALP 91
Query: 146 DEAFDVAFTA----HLAEALFPSRFVGEMERTVKIGGVCMVL 183
D++ D + H + + EM+R ++ G + ++
Sbjct: 92 DKSVDGVISILAIHHFSH---LEKSFQEMQRIIRDGTIVLLT 130
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-06
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 28/161 (17%)
Query: 62 EKKNHRLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVAD 121
+ + +W S S + F ++++ ++ +VL V G G+ + G
Sbjct: 28 NQNSQEMWDSGSRSTII---PFFEQYVKKEA------EVLDVGCGDGYGTYKLSRTG-YK 77
Query: 122 VTGVELMDSLPLVSRA--------------DPHNLPFFDEAFDVAFTAHLAEALF-PSRF 166
GV++ S ++ + D +LPF +E F+ + E P R
Sbjct: 78 AVGVDI--SEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRA 135
Query: 167 VGEMERTVKIGG-VCMVLMEECAGREIKQIVELFRTSRFVD 206
+ E++R +K G C+ ++ A L+ +
Sbjct: 136 LNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCN 176
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 8e-06
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 24/119 (20%)
Query: 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA----- 137
F K+ +L VL AG ++ G+E+ S + +A
Sbjct: 13 RFLKYCNESNL---DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEI--SDLQLKKAENFSR 67
Query: 138 -----------DPHNLPFFDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMV 182
D LPF DE+ ++ + + E++R +K GG+ +
Sbjct: 68 ENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACI 126
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-05
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 20/115 (17%)
Query: 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA-------- 137
K L L S + + G G + M VTG++ +
Sbjct: 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDF--LSGFIDIFNRNARQSG 93
Query: 138 ----------DPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182
+LPF +E D+ ++ + R + E + +K GG V
Sbjct: 94 LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAV 148
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 21/120 (17%)
Query: 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRA-------- 137
K + + L + +K+ + G G + + +TG++L +
Sbjct: 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDL--FPDFIEIFNENAVKAN 93
Query: 138 ----------DPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187
NLPF +E D+ ++ + R + E + +K GG + + E
Sbjct: 94 CADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGF-IAVSEAS 152
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 6e-05
Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 31/131 (23%)
Query: 80 SYAHFFKHLQGKSL--------LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVEL---- 127
Y H +G L L + +VL V+ G GH AF V V +L
Sbjct: 13 MYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDI 71
Query: 128 ------------MDSLPLVSRADPHNLPFFDEAFDV---AFTAHLAEALFPSRFVGEMER 172
+ V + D +PF DE F + AH P+ FV E R
Sbjct: 72 LKVARAFIEGNGHQQVEYV-QGDAEQMPFTDERFHIVTCRIAAHHFPN--PASFVSEAYR 128
Query: 173 TVKIGGVCMVL 183
+K GG +++
Sbjct: 129 VLKKGGQLLLV 139
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 8e-05
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 103 VSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALF 162
G + + V +L P V+ D +P DE+ DVA
Sbjct: 74 FGCGDCRLASSIRN----PVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTN 129
Query: 163 PSRFVGEMERTVKIGGVCMV 182
F+ E R +K GG+ V
Sbjct: 130 IRDFLEEANRVLKPGGLLKV 149
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 28/143 (19%)
Query: 60 PLEKKNHRLWSSKSWKQQVTSYAHFFKH--------LQGKSLLFNHSKVLCVSAGAGHEV 111
+ +H +W +++ V Y +F LQ L + + + G G
Sbjct: 5 KIHHHHHHMW--HIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGR-- 60
Query: 112 MAFNSIGVADVTGVELMDSLPLVSRA----------DPHNLPFFDEAFDVAFTAHLAEAL 161
++ + GVE S + A NLP DE+FD A +
Sbjct: 61 ---FAVPLKIKIGVEP--SERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFV 115
Query: 162 F-PSRFVGEMERTVKIGGVCMVL 183
P R + E R +K GG +V
Sbjct: 116 DDPERALKEAYRILKKGGYLIVG 138
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 99 KVLCVSAGAGHEVMAFNSIGVADVTGVEL----------------MDSLPLVSRADPHNL 142
+VL + AGAGH +AF+ V + GV+ ++++ + +L
Sbjct: 24 RVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQ-QGTAESL 81
Query: 143 PFFDEAFDV---AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183
PF D++FD+ + AH + V E+ R +K G +++
Sbjct: 82 PFPDDSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLV 123
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 19/103 (18%)
Query: 99 KVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSR----------------ADPHNL 142
+ + +G G +A + ++ + ++ D HN+
Sbjct: 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI 105
Query: 143 PFFDEAFDVAFTAHLAEALFP--SRFVGEMERTVKIGGVCMVL 183
P D D+ + + + E+ R +K GG +
Sbjct: 106 PIEDNYADLIVSRGSVF-FWEDVATAFREIYRILKSGGKTYIG 147
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 24/157 (15%)
Query: 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNH-----SKVLCVSAGAGHEVMAFNSIGVADVT 123
S+++ Q+ + A + G++ L + +K+L G G + G DV
Sbjct: 14 AHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQG-HDVL 72
Query: 124 GVELMDSLPLVSRA------------DPHNLPFFDEAFDVAFTAHLAEALFP----SRFV 167
G +L L+ A D + FD+ +A +
Sbjct: 73 GTDL--DPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPAL 130
Query: 168 GEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204
+ R + G ++ G +E+
Sbjct: 131 ANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGL 167
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 5e-04
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 99 KVLCVSAGAGHEVMAFNSIGVADVTGVEL---M------------DSLPLVSRADPHNLP 143
L + G G + + G ++ M + +V +AD +P
Sbjct: 42 VFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVV-QADARAIP 99
Query: 144 FFDEAFDVAFTAHLAEALF-PSRFVGEMERTVKIGGVCMVL 183
DE+ HL + + + E R +K GG +
Sbjct: 100 LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 5e-04
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 27/130 (20%)
Query: 69 WSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELM 128
+S+ ++ ++ + K KVL ++ G G G +V GV++
Sbjct: 16 INSQEYRSRIETLEPLLMKYMKK-----RGKVLDLACGVGGFSFLLEDYG-FEVVGVDI- 68
Query: 129 DSLPLVSRA----------------DPHNLPFFDEAFDVAF---TAHLAEALFPSRFVGE 169
S ++ +A D L F D+ FD + E L ++ E
Sbjct: 69 -SEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKE 127
Query: 170 MERTVKIGGV 179
+ R +K G
Sbjct: 128 VRRVLKPSGK 137
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 7e-04
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 22/101 (21%)
Query: 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVEL---M--------DSLPLVSRADPHNLPFFD 146
+L V AG G+ + GVE M V RA LPF
Sbjct: 38 ESLLEVGAGTGYWLRRLPY---PQKVGVEPSEAMLAVGRRRAPEATWV-RAWGEALPFPG 93
Query: 147 EAFDVAFTA----HLAEALFPSRFVGEMERTVKIGGVCMVL 183
E+FDV + + R + E R ++ GG +V
Sbjct: 94 ESFDVVLLFTTLEFVED---VERVLLEARRVLRPGGALVVG 131
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.73 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.72 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.72 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.7 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.7 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.69 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.69 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.69 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.68 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.68 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.68 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.68 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.68 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.67 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.67 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.67 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.67 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.67 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.67 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.66 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.66 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.66 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.66 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.65 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.65 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.65 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.64 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.64 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.64 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.64 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.64 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.63 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.63 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.63 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.63 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.62 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.61 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.61 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.6 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.6 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.6 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.6 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.6 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.6 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.6 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.59 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.59 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.59 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.59 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.59 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.58 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.58 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.58 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.58 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.58 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.58 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.58 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.58 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.57 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.57 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.57 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.57 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.57 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.57 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.57 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.57 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.56 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.56 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.55 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.55 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.55 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.55 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.54 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.54 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.53 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.53 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.53 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.53 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.53 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.52 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.52 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.52 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.52 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.52 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.51 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.51 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.51 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.51 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.51 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.51 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.5 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.49 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.49 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.49 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.49 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.49 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.48 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.48 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.47 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.47 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.47 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.46 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.46 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.45 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.45 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.45 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.45 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.45 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.45 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.44 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.44 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.44 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.44 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.44 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.44 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.44 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.44 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.43 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.43 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.43 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.41 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.41 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.41 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.41 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.41 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.41 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.4 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.4 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.4 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.4 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.4 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.39 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.39 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.39 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.39 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.39 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.39 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.39 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.38 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.37 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.37 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.37 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.37 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.37 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.37 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.36 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.35 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.35 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.35 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.34 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.34 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.33 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.33 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.32 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.32 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.32 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.32 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.31 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.31 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.31 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.31 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.31 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.31 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.31 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.3 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.3 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.3 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.29 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.29 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.29 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.28 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.27 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.27 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.27 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.26 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.26 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.26 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.26 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.25 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.25 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.24 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.23 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.23 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.23 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.22 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.21 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.21 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.2 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.2 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.2 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.2 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.19 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.19 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.18 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.18 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.17 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.17 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.16 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.16 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.16 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.15 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.15 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.15 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.15 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.15 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.15 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.14 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.14 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.11 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.11 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.11 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.11 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.1 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.09 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.08 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.07 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.07 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.07 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.06 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.05 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.04 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.04 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.04 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.04 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.03 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 99.01 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.01 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.01 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.01 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.01 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.01 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.99 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.99 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.98 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.98 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.97 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.97 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.96 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.95 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.94 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.92 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.91 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.9 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.86 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.85 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.83 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.82 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.82 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.78 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.77 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.76 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.75 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.75 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.72 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.72 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.64 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.63 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.63 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.63 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.6 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.58 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.56 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.54 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.54 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.53 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.53 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.5 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.47 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.42 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.42 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.41 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.39 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.38 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.33 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.31 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.29 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.28 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.25 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.21 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.2 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.17 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.15 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.14 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.12 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.08 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.99 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.96 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.96 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.85 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.6 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.51 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.48 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.44 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.07 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.88 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.63 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.7 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.55 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.51 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.86 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.81 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.6 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 94.43 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.41 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.25 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.14 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.13 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.01 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.89 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.88 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.64 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.61 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.59 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.51 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.51 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 93.5 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.49 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.3 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.15 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.13 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.7 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.31 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.14 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.1 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 92.05 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.67 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.56 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 91.52 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 91.41 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 91.34 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.24 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 91.23 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.22 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 90.76 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.74 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 90.72 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.6 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.48 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 89.93 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 89.9 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 89.7 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 89.58 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 89.53 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 89.49 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 89.41 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 89.15 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 88.86 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 88.69 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 88.44 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 88.25 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 88.2 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 87.88 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 87.8 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 87.52 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 87.47 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 87.47 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 87.34 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 87.32 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 87.01 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 86.9 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 86.81 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 86.66 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 86.14 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 85.96 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.71 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 85.35 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 84.7 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 83.96 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 83.78 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 83.51 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 83.24 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 83.18 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 83.0 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 82.84 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 82.77 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 82.34 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 82.21 | |
| 4gua_A | 670 | Non-structural polyprotein; viral precursor polypr | 82.02 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 81.89 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 80.01 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=139.19 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------CCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSR 165 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~ 165 (229)
..+.+|||||||+|..+..+++.+. +|+|+|+|+. .+.++++|++++|+++++||+|++....|+.++.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~~ 116 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLDR 116 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHHH
Confidence 4567999999999999999999975 9999999976 34589999999999999999999998888889999
Q ss_pred HHHHHHhccccCcEEEEEeec
Q 027039 166 FVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 166 ~l~~~~~~LkpgG~lil~~~~ 186 (229)
+++++.|+|||||.++++...
T Consensus 117 ~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 117 FWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp HHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCEEEEEECC
Confidence 999999999999999876654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=127.85 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=108.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+.++.+|||+|||+|..+..+++.+ ..+++|+|+++. .+.++.+|+.++++++++||+|+++
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 113 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMA 113 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEE
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEee
Confidence 45788999999999999999999873 459999999975 3668999999999989999999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeecC----------CcccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC----------AGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
.+.++. ++..+++++.++|||||.+++..... ..++..++.+++...+|..+......+.. ..++.++
T Consensus 114 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~~k 192 (219)
T 3dh0_A 114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYC-FGVYAMI 192 (219)
T ss_dssp SCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTE-EEEEEEC
T ss_pred hhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCce-EEEEEEe
Confidence 888888 89999999999999999998765332 13357889999999999888876666654 4555555
Q ss_pred c
Q 027039 225 T 225 (229)
Q Consensus 225 ~ 225 (229)
.
T Consensus 193 ~ 193 (219)
T 3dh0_A 193 V 193 (219)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-17 Score=129.07 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=108.4
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh---CH
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL---FP 163 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~---~~ 163 (229)
+.+|||+|||+|.++..+++.+. +++|+|+++. .+.++++|+.++++++++||+|+++.+.++. ++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGEL 120 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTH
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHH
Confidence 88999999999999999999976 9999999976 4669999999999889999999999887777 67
Q ss_pred HHHHHHHHhccccCcEEEEEeecCCc-------------ccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEeccC
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEECAG-------------REIKQIVELFRTSRFVDAANVTVNGSNMTRILMRRTRL 227 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~~~~-------------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (229)
..+++++.++|||||.+++.+..... .+..++.+++...+|..+......+ ...-.+....++
T Consensus 121 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-~p~~~l~~~~~~ 196 (203)
T 3h2b_A 121 PDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR-FPHAYLTAEASL 196 (203)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT-SSEEEEEEEECC
T ss_pred HHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC-Ccchhhhhhhhh
Confidence 99999999999999999988755432 4678999999999998887766666 555555555444
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=126.30 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=104.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERTV 174 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~L 174 (229)
.++.+|||||||+|..+..++ .+++|+|+++..+.++++|+.++++++++||+|+++.+.++.++..+++++.++|
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L 141 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVL 141 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHE
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHHHHHhC
Confidence 678899999999999988873 4999999999999999999999999889999999987776558999999999999
Q ss_pred ccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEec
Q 027039 175 KIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRRT 225 (229)
Q Consensus 175 kpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (229)
||||.+++........+..++.+++...+|..+......+ ....++++|.
T Consensus 142 ~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-~~~~~~~~k~ 191 (215)
T 2zfu_A 142 KPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNS-HFFLFDFQKT 191 (215)
T ss_dssp EEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCST-TCEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCC-eEEEEEEEec
Confidence 9999998765554445778899999999998766443333 3356666664
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-17 Score=130.24 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=99.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
..+++ +|||+|||+|..+..+++.+..+++|+|+++. .+.++++|+.++++++++||+|+++.
T Consensus 41 ~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 41 GITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp CCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECc
Confidence 34455 99999999999999999884459999999875 35689999999999999999999998
Q ss_pred chhhh-CHHHHHHHHHhccccCcEEEEEeec---------------------------CCcccHHHHHHHHhcCceeEee
Q 027039 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLMEE---------------------------CAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~---------------------------~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
+.++. ++.++++++.++|||||.+++.... ...++..++.++++..+|..+.
T Consensus 120 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 199 (219)
T 3dlc_A 120 SVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199 (219)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEE
T ss_pred hHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEE
Confidence 88888 8999999999999999998876322 1222446788889988888776
Q ss_pred eeeecCC
Q 027039 209 NVTVNGS 215 (229)
Q Consensus 209 ~~~~~~~ 215 (229)
.....+.
T Consensus 200 ~~~~~~~ 206 (219)
T 3dlc_A 200 IILGDEG 206 (219)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 6655544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=130.39 Aligned_cols=91 Identities=29% Similarity=0.422 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
...++.+|||||||+|.++..+++.+. +++|+|+++. .+.++++|+.++|+++++||+|+++..
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA 112 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhh
Confidence 346889999999999999999999864 9999999975 356899999999999999999999988
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.++. ++..+++++.++|||||.+++..
T Consensus 113 l~~~~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 113 AHHFPNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 8888 89999999999999999998764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=128.12 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=100.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~- 161 (229)
+++.+|||||||+|..+..+++.+. +++|+|+++. .+.++++|+.++++++++||+|++.++.+|.
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 6889999999999999999999976 9999999875 4568999999999989999999999988888
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCC-------------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECA-------------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~-------------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
++.++++++.++|||||.+++.+.... ..+..++.+++...+|..+.....
T Consensus 131 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 131 EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 899999999999999999998874322 135567889999998887775533
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-16 Score=129.19 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=100.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.++++.+|||||||+|..+..+++.+..+|+|+|+++. .+.++.+|+.++++++++||+|+++.
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 35789999999999999999999996669999999976 26799999999998899999999998
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecC------------------CcccHHHHHHHHhcCceeEeeeeee
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEEC------------------AGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~------------------~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+.++.++.++++++.++|||||.+++..... .-.+..++.+++...+|..+.....
T Consensus 123 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 196 (267)
T 3kkz_A 123 AIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFIL 196 (267)
T ss_dssp CGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEEC
T ss_pred CceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence 8888899999999999999999999776431 1124567778888888887765443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-16 Score=127.75 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=99.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------------CCeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
..++.+|||||||+|..+..+++.+..+++|+|+++. .+.++.+|+.++++++++||+|+++.+.++.
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 121 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI 121 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh
Confidence 3578999999999999999999997669999999975 4568999999999989999999999988888
Q ss_pred -CHHHHHHHHHhccccCcEEEEEeecCC---------------c----------------------------ccHHHHHH
Q 027039 162 -FPSRFVGEMERTVKIGGVCMVLMEECA---------------G----------------------------REIKQIVE 197 (229)
Q Consensus 162 -~~~~~l~~~~~~LkpgG~lil~~~~~~---------------~----------------------------~~~~~l~~ 197 (229)
++.++++++.++|||||.+++.+.... . .+..++.+
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 201 (253)
T 3g5l_A 122 ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQ 201 (253)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHH
Confidence 899999999999999999998643210 0 16788999
Q ss_pred HHhcCceeEeeee
Q 027039 198 LFRTSRFVDAANV 210 (229)
Q Consensus 198 l~~~~~~~~~~~~ 210 (229)
++...+|..+.-.
T Consensus 202 ~l~~aGF~~~~~~ 214 (253)
T 3g5l_A 202 TLLKNGFQINSVI 214 (253)
T ss_dssp HHHHTTEEEEEEE
T ss_pred HHHHcCCeeeeee
Confidence 9999998876654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=128.63 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=95.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-C
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~ 162 (229)
.++.+|||||||+|.++..+++.+. +|+|+|+++. .+.++++|+.++ +++++||+|++.++.+|. +
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC
Confidence 4778999999999999999999876 9999999976 456889999887 467899999999999988 8
Q ss_pred HHHHHHHHH-hccccCcEEEEEeecCC------------------------------cccHHHHHHHHhcCceeEeee
Q 027039 163 PSRFVGEME-RTVKIGGVCMVLMEECA------------------------------GREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 163 ~~~~l~~~~-~~LkpgG~lil~~~~~~------------------------------~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+.++++++. ++|||||.+++.+.... ..+..++.++++..+|..+..
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 999999999 99999999998875422 235667888888877766553
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=128.89 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=97.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
..++++.+|||||||+|..+..+++. +. +++|+|+++. .+.++++|+.++++ +++||+|++
T Consensus 32 ~~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~ 109 (256)
T 1nkv_A 32 LRMKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAAC 109 (256)
T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEE
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEE
Confidence 35678999999999999999999987 55 9999999974 36799999999887 889999999
Q ss_pred ccchhhh-CHHHHHHHHHhccccCcEEEEEeecC-------------------CcccHHHHHHHHhcCceeEeeee
Q 027039 155 AHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEEC-------------------AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 155 ~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~-------------------~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
..+.++. ++.++++++.++|||||++++..... ...+..++.+++...+|..+...
T Consensus 110 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 185 (256)
T 1nkv_A 110 VGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV 185 (256)
T ss_dssp ESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred CCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEEE
Confidence 9888888 89999999999999999999765431 12245678888888888766543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=123.09 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------CCeEEEcCCCCCCCCCC
Q 027039 79 TSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLPFFDE 147 (229)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~ 147 (229)
..+..++..+. ..++.+|||+|||+|..+..+++.+. +++|+|+++. .+.++.+|+.+++++ +
T Consensus 32 ~~~~~~l~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~ 105 (220)
T 3hnr_A 32 AHYEDILEDVV----NKSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-T 105 (220)
T ss_dssp TTHHHHHHHHH----HTCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-S
T ss_pred HHHHHHHHHhh----ccCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-C
Confidence 34444544442 25789999999999999999999965 9999999986 467999999999887 9
Q ss_pred ceeEEEcccchhhh-CHHH--HHHHHHhccccCcEEEEEeecCCc----------------------------ccHHHHH
Q 027039 148 AFDVAFTAHLAEAL-FPSR--FVGEMERTVKIGGVCMVLMEECAG----------------------------REIKQIV 196 (229)
Q Consensus 148 ~fD~V~~~~~~~~~-~~~~--~l~~~~~~LkpgG~lil~~~~~~~----------------------------~~~~~l~ 196 (229)
+||+|+++.+.++. ++.. +++++.++|||||.+++....... .+..++.
T Consensus 106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (220)
T 3hnr_A 106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQ 185 (220)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred CeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence 99999999988888 5555 999999999999999987543211 1457788
Q ss_pred HHHhcCceeEeeeeeecCC
Q 027039 197 ELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~ 215 (229)
++++..+| ++..+...+.
T Consensus 186 ~~l~~aGf-~v~~~~~~~~ 203 (220)
T 3hnr_A 186 TIFENNGF-HVTFTRLNHF 203 (220)
T ss_dssp HHHHHTTE-EEEEEECSSS
T ss_pred HHHHHCCC-EEEEeeccce
Confidence 89999999 4555544443
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-16 Score=127.80 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=101.5
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCcee
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD 150 (229)
...++....++++.+|||||||+|..+..+++. +. +|+|+|+++. .+.++++|+.+.++++++||
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 344455556688999999999999999999997 65 9999999974 45689999999999899999
Q ss_pred EEEcccchhhh---CHHHHHHHHHhccccCcEEEEEeecCC-------------------cccHHHHHHHHhcCceeEee
Q 027039 151 VAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEECA-------------------GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 151 ~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~~~-------------------~~~~~~l~~l~~~~~~~~~~ 208 (229)
+|+++.+.+|. ++..+++++.++|||||.+++...... ..+..++.+++...+|..+.
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 99999887776 578899999999999999998764322 23566788888888887665
Q ss_pred e
Q 027039 209 N 209 (229)
Q Consensus 209 ~ 209 (229)
.
T Consensus 203 ~ 203 (266)
T 3ujc_A 203 S 203 (266)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-16 Score=131.18 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=98.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
++++.+|||+|||+|.++..+++. +. +|+|+|+++. .+.++.+|+.++|+++++||+|+++.
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 678999999999999999999988 75 9999999976 36699999999999899999999998
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCc--------------------ccHHHHHHHHhcCceeEeeee
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAG--------------------REIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~--------------------~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+.++.++.++++++.++|||||++++....... .+..++.+++++.+|..+...
T Consensus 194 ~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 194 STMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp CGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred chhhCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 888889999999999999999999987644221 245677888888888766543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-16 Score=126.88 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=100.2
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.++++.+|||||||+|..+..+++.+..+|+|+|+++. .+.++++|+.++|+++++||+|+++.
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 45788999999999999999999984349999999975 16799999999999899999999998
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecC------------------CcccHHHHHHHHhcCceeEeeeeee
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEEC------------------AGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~------------------~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+.++.++.++++++.++|||||.+++..... .-.+..++.+++...+|..+.....
T Consensus 123 ~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 196 (257)
T 3f4k_A 123 AIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFIL 196 (257)
T ss_dssp CSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEEC
T ss_pred hHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 8888899999999999999999999876431 1224567788888888887775443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-16 Score=129.17 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=91.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe----------------------------------------
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------------------------------------- 133 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~---------------------------------------- 133 (229)
..++.+|||||||+|.++..++..+..+|+|+|+|+.+++
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4678899999999999888777777768999999965222
Q ss_pred -----EEEcCCCC-CCCC---CCceeEEEcccchhhh-----CHHHHHHHHHhccccCcEEEEEeecCC-----------
Q 027039 134 -----VSRADPHN-LPFF---DEAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEECA----------- 188 (229)
Q Consensus 134 -----~~~~d~~~-~~~~---~~~fD~V~~~~~~~~~-----~~~~~l~~~~~~LkpgG~lil~~~~~~----------- 188 (229)
++++|+.+ .|++ +++||+|+++.+.++. ++.++++++.++|||||.+++......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 77889887 3443 5799999999887764 346899999999999999998753221
Q ss_pred --cccHHHHHHHHhcCceeEeeee
Q 027039 189 --GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 189 --~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
..+..++.+.+.+.+|..++..
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~ 236 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLL 236 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEe
Confidence 1367789999999888765543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=126.67 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=88.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------------------CCeEEEcCCCCCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------------------~~~~~~~d~~~~~~~ 145 (229)
.+.++.+|||+|||+|..+..+++.|. +|+|+|+|+. .+.++++|+.+++++
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 346889999999999999999999987 9999999964 246889999999876
Q ss_pred C-CceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeecCC---------cccHHHHHHHHhcCcee
Q 027039 146 D-EAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFRTSRFV 205 (229)
Q Consensus 146 ~-~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~~---------~~~~~~l~~l~~~~~~~ 205 (229)
+ ++||+|++..+.+++. ..++++++.++|||||++++++.... ..+..++.++|.. +|.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~ 169 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWE 169 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEE
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcE
Confidence 5 8999999987666663 35689999999999998554543321 1356788888886 553
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=124.80 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=95.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++++.+|||||||+|..+..+++.+. +++|+|+++. .+.++++|+.++++++++||+|+++.+
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA 96 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc
Confidence 457899999999999999999999865 9999999975 356899999999998999999999988
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEeecC----------------------CcccHHHHHHHHhcCceeEee
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEEC----------------------AGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~----------------------~~~~~~~l~~l~~~~~~~~~~ 208 (229)
.++. ++..+++++.++|||||.+++..... ..++..++.+++...+|..+.
T Consensus 97 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 170 (239)
T 1xxl_A 97 AHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD 170 (239)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred hhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEE
Confidence 8888 89999999999999999998764332 123556677777777776444
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-16 Score=127.53 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=99.1
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCC
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~ 145 (229)
.....+.....+.++.+|||||||+|..+..+++. +. +|+|+|+++. .+.++.+|+.++|++
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 33444444445678999999999999999999886 54 9999999975 267899999999998
Q ss_pred CCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCC----------------------cccHHHHHHHHhcC
Q 027039 146 DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA----------------------GREIKQIVELFRTS 202 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~----------------------~~~~~~l~~l~~~~ 202 (229)
+++||+|++..+.+|. ++.++++++.++|||||++++...... ..+..++.+++...
T Consensus 127 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 206 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQA 206 (273)
T ss_dssp TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHT
T ss_pred CCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHc
Confidence 9999999999888888 899999999999999999987763321 12345566677777
Q ss_pred ceeEee
Q 027039 203 RFVDAA 208 (229)
Q Consensus 203 ~~~~~~ 208 (229)
+|..+.
T Consensus 207 Gf~~~~ 212 (273)
T 3bus_A 207 ELVVTS 212 (273)
T ss_dssp TCEEEE
T ss_pred CCeEEE
Confidence 766544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=124.44 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=96.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------CCeEEEcCCCCCCCCCCceeEEEcccchhhh---
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL--- 161 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~--- 161 (229)
+.++.+|||+|||+|.++..+++.+. +++|+|+++. .+.++.+|+.+++ ++++||+|+++.+.++.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCHH
Confidence 46889999999999999999999976 9999999987 4558889999888 78999999999888877
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCc------------ccHHHHHHHHhcCc-eeEeeee
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAG------------REIKQIVELFRTSR-FVDAANV 210 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~------------~~~~~l~~l~~~~~-~~~~~~~ 210 (229)
++..+++++.++|||||.+++.+..... .+..++.+++...+ |..+...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 4578999999999999999988765332 37788999999766 5554443
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=129.01 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=96.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+.++.+|||||||+|..+..+++. +. +++|+|+++. .+.++.+|+.++|+++++||+|++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 5578999999999999999999987 76 9999999976 2568999999999999999999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEeecCC-------------------cccHHHHHHHHhcCceeEeee
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA-------------------GREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~-------------------~~~~~~l~~l~~~~~~~~~~~ 209 (229)
.+.+|. ++..+++++.++|||||.+++...... ..+..++.+++...+|..+..
T Consensus 158 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 158 DAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 888888 899999999999999999998764321 114456667777777766554
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=127.54 Aligned_cols=114 Identities=13% Similarity=0.186 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCC-CCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLP-FFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~-~~~~~fD~V~~~~~ 157 (229)
.++.+|||||||+|..+..+++.+. +|+|+|+++. .+.++++|+.+++ +.+++||+|+++.+
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3478999999999999999999976 9999999974 3558999999987 77899999999998
Q ss_pred hhhh-CHHHHHHHHHhccccCcEEEEEeecC-------------------------------CcccHHHHHHHHhcCcee
Q 027039 158 AEAL-FPSRFVGEMERTVKIGGVCMVLMEEC-------------------------------AGREIKQIVELFRTSRFV 205 (229)
Q Consensus 158 ~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~-------------------------------~~~~~~~l~~l~~~~~~~ 205 (229)
.++. ++.++++++.++|||||.+++..... ...+..++.+++...+|.
T Consensus 146 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 225 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQ 225 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCE
T ss_pred hhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCc
Confidence 8888 89999999999999999999876421 123557888888888877
Q ss_pred Eeee
Q 027039 206 DAAN 209 (229)
Q Consensus 206 ~~~~ 209 (229)
.+..
T Consensus 226 v~~~ 229 (285)
T 4htf_A 226 IMGK 229 (285)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=118.45 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=99.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcc-cchhhh-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTA-HLAEAL- 161 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~-~~~~~~- 161 (229)
++++.+|||+|||+|..+..+++.+. +++++|+++. .+.++.+|+.+.++++++||+|+++ .+.++.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 47889999999999999999999865 9999999975 3678999999988888999999997 666665
Q ss_pred --CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 162 --FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 162 --~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+..++++++.++|||||.+++.......++..++.+.+...+|..+...
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeee
Confidence 2478999999999999999988887777788899999998888766544
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=121.22 Aligned_cols=115 Identities=22% Similarity=0.298 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------------CeEEEcCCCCCCCCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------------PLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------------~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
+++.+|||+|||+|..+..+++.+. +++|+|+++.+ +.++.+|+.++++++++||+|++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 7899999999999999999999976 99999998751 46889999999988999999999
Q ss_pred ccchhhh-CHH---HHHHHHHhccccCcEEEEEeecC--------------------------------------CcccH
Q 027039 155 AHLAEAL-FPS---RFVGEMERTVKIGGVCMVLMEEC--------------------------------------AGREI 192 (229)
Q Consensus 155 ~~~~~~~-~~~---~~l~~~~~~LkpgG~lil~~~~~--------------------------------------~~~~~ 192 (229)
+.+.++. ++. ++++++.++|||||.+++..... ..++.
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE 187 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence 9888888 777 89999999999999998774321 13467
Q ss_pred HHHHHHHhcCceeEeeee
Q 027039 193 KQIVELFRTSRFVDAANV 210 (229)
Q Consensus 193 ~~l~~l~~~~~~~~~~~~ 210 (229)
.++.++++..+|..+.-.
T Consensus 188 ~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 188 KELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp HHHHHHHHTTTEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 889999998888776653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=127.34 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=84.7
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++......++.+|||||||+|..+..+++. +..+++|+|+++. .+.++.+|+.+++ ++++||+|+++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 102 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYAN 102 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEe
Confidence 3444444578899999999999999999988 4459999999975 4678999999988 78899999999
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.+.++. ++..+++++.++|||||.+++.+.
T Consensus 103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 103 AVFQWVPDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp SCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 888888 899999999999999999998765
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=117.94 Aligned_cols=126 Identities=11% Similarity=0.113 Sum_probs=102.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-C
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~ 162 (229)
+.++.+|||+|||+|..+..+++.+. +++|+|+++. .+.+..+| .++++++||+|+++.+.++. +
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccC
Confidence 47888999999999999999999975 9999999976 46677777 77788999999999888888 8
Q ss_pred HHHHHHHHHhccccCcEEEEEeecCC----------cccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEecc
Q 027039 163 PSRFVGEMERTVKIGGVCMVLMEECA----------GREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~~~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (229)
+..+++++.++|||||.+++...... ..+..++.+++. +|..++........ ..+++.+++
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~-~~l~~~~~~ 161 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYH-FGLVLKRKT 161 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTE-EEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCce-EEEEEecCC
Confidence 99999999999999999997754322 235678888888 88877766666565 455555544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-16 Score=130.95 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=81.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-C
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~ 162 (229)
..++.+|||||||+|.++..+++.+ .+|+|+|+++. .+.++.+|+.++++ +++||+|+++.+.++. +
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d 132 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKE 132 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCSC
T ss_pred CCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCcC
Confidence 4678999999999999999999965 49999999976 46699999999987 6899999999888887 8
Q ss_pred HHHHHHHHHhccccCcEEEEEeec
Q 027039 163 PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+..+++++.++|||||.+++.+..
T Consensus 133 ~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 133 PEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCcEEEEEecC
Confidence 999999999999999999987665
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-15 Score=117.96 Aligned_cols=119 Identities=17% Similarity=0.122 Sum_probs=97.5
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~- 161 (229)
+.++.+|||||||+|..+..+++.+. +++|+|+++. .+.++++|+.++ +++++||+|+++.+.++.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCC
Confidence 57788999999999999999999866 9999999874 466899999988 778999999999988888
Q ss_pred CH--HHHHHHHHhccccCcEEEEEeecCC-------------------------------cccHHHHHHHHhcCceeEee
Q 027039 162 FP--SRFVGEMERTVKIGGVCMVLMEECA-------------------------------GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 162 ~~--~~~l~~~~~~LkpgG~lil~~~~~~-------------------------------~~~~~~l~~l~~~~~~~~~~ 208 (229)
++ ..+++++.++|||||.+++...... ..+..++.+++...+|. +.
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~-v~ 200 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS-CS 200 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEE-EE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCE-EE
Confidence 44 7899999999999999988754221 12567888999999998 54
Q ss_pred eeeecCC
Q 027039 209 NVTVNGS 215 (229)
Q Consensus 209 ~~~~~~~ 215 (229)
.....+.
T Consensus 201 ~~~~~~~ 207 (218)
T 3ou2_A 201 VDEVHPG 207 (218)
T ss_dssp EEEEETT
T ss_pred eeecccc
Confidence 4444443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.3e-16 Score=127.57 Aligned_cols=92 Identities=21% Similarity=0.176 Sum_probs=81.2
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-C
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~ 162 (229)
...++.+|||||||+|.++..+++.+. +|+|+|+++. .+.++++|+.++++++++||+|+++++.+|. +
T Consensus 31 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 109 (261)
T 3ege_A 31 NLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSH 109 (261)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSS
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhccC
Confidence 347889999999999999999998764 9999999975 3468999999999999999999999988888 8
Q ss_pred HHHHHHHHHhccccCcEEEEEeec
Q 027039 163 PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.++++++.++|| ||.+++....
T Consensus 110 ~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 110 LEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp HHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred HHHHHHHHHHHhC-CcEEEEEEcC
Confidence 9999999999999 9977766544
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=127.61 Aligned_cols=95 Identities=23% Similarity=0.358 Sum_probs=83.9
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEc
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
...+.++.+|||||||+|.++..+++. +..+++|+|+++. .+.++.+|+.++++++++||+|++
T Consensus 32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 32 DTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV 111 (276)
T ss_dssp TCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred cccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence 345678999999999999999999988 3569999999864 366889999999998999999999
Q ss_pred ccchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 155 AHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 155 ~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+.+.++. ++..+++++.++|||||.+++...
T Consensus 112 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 112 CFVLEHLQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred echhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9888888 899999999999999999987653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=138.39 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=105.2
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------EE-----EcCCCCCCCCCCcee
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------VS-----RADPHNLPFFDEAFD 150 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------~~-----~~d~~~~~~~~~~fD 150 (229)
....++....++++.+|||||||+|.++..+++.+. +++|+|+++.+++ .. ..+...+++++++||
T Consensus 95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD 173 (416)
T 4e2x_A 95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPAN 173 (416)
T ss_dssp HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEE
Confidence 334444444567889999999999999999999977 9999999976432 22 233334556678999
Q ss_pred EEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeec-----------------CCcccHHHHHHHHhcCceeEeeeeee
Q 027039 151 VAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE-----------------CAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 151 ~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~-----------------~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+|+++++.+|+ ++..+++++.++|||||.+++.+.. ...++..++.+++.+.+|..+.....
T Consensus 174 ~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~ 253 (416)
T 4e2x_A 174 VIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRL 253 (416)
T ss_dssp EEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEc
Confidence 99999999999 9999999999999999999987653 11235678999999998877665543
Q ss_pred --cCCeeEEEEEE
Q 027039 213 --NGSNMTRILMR 223 (229)
Q Consensus 213 --~~~~~~~~~~~ 223 (229)
.|...+..+.+
T Consensus 254 ~~~~g~l~~~~~~ 266 (416)
T 4e2x_A 254 PVHGGEVRYTLAR 266 (416)
T ss_dssp CGGGSEEEEEEEE
T ss_pred cCCCCEEEEEEEe
Confidence 46665555443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-16 Score=128.46 Aligned_cols=91 Identities=10% Similarity=0.180 Sum_probs=76.7
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC---CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeE
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~---g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~ 151 (229)
...++++.+|||||||+|..+..+++. +..+|+|+|+|+.+ ++++++|+.++|+ +.||+
T Consensus 65 ~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~ 142 (261)
T 4gek_A 65 ERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASM 142 (261)
T ss_dssp HHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEE
T ss_pred HHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--ccccc
Confidence 345789999999999999999999876 23489999999863 4589999999887 46999
Q ss_pred EEcccchhhhCH---HHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFP---SRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~ 183 (229)
|+++.+.+++.+ .+++++++++|||||.+++.
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence 999988887743 46899999999999998865
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-15 Score=120.42 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=95.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
..++.+|||+|||+|..+..+++. +..+++|+|+++. .+.++++|+.+++++ ++||+|+++.+.+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIH 120 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccc
Confidence 467899999999999999999988 3459999999975 356899999999876 8999999998888
Q ss_pred hhC-HH--HHHHHHHhccccCcEEEEEeecCC--------------------------------------cccHHHHHHH
Q 027039 160 ALF-PS--RFVGEMERTVKIGGVCMVLMEECA--------------------------------------GREIKQIVEL 198 (229)
Q Consensus 160 ~~~-~~--~~l~~~~~~LkpgG~lil~~~~~~--------------------------------------~~~~~~l~~l 198 (229)
+.. +. ++++++.++|||||.+++...... .++..++.++
T Consensus 121 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 121 HLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 884 33 599999999999999997653321 1244567778
Q ss_pred HhcCceeEeeeeee
Q 027039 199 FRTSRFVDAANVTV 212 (229)
Q Consensus 199 ~~~~~~~~~~~~~~ 212 (229)
++..+|..++....
T Consensus 201 l~~aGF~~v~~~~~ 214 (234)
T 3dtn_A 201 LKEAGFRDVSCIYK 214 (234)
T ss_dssp HHHTTCEEEEEEEE
T ss_pred HHHcCCCceeeeee
Confidence 88899888876544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=127.33 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=96.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------CeEEEcCCCCC--CCCCCceeEEEcccchhhh-C
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------PLVSRADPHNL--PFFDEAFDVAFTAHLAEAL-F 162 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------~~~~~~d~~~~--~~~~~~fD~V~~~~~~~~~-~ 162 (229)
.++++.+|||||||+|.++..+++.+. +|+|+|+++.+ +.++.+|..+. ++++++||+|+++.+.+|. +
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~ 116 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP 116 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence 357889999999999999999999876 89999999874 56888888775 7888999999999888888 4
Q ss_pred H--HHHHHHHHhccccCcEEEEEeecCC----------------cccHHHHHHHHhcCceeEeeee
Q 027039 163 P--SRFVGEMERTVKIGGVCMVLMEECA----------------GREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 163 ~--~~~l~~~~~~LkpgG~lil~~~~~~----------------~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+ ..+++++.++|||||.+++.+.... ..+..++.+++...+|..+...
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 4 8999999999999999998876533 2345678888888887755543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-15 Score=122.02 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEccc-chhhh--
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTAH-LAEAL-- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~-~~~~~-- 161 (229)
.++.+|||||||+|.++..+++.+. +|+|+|+++. .+.++++|+.++++ +++||+|++.. +.+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCC
Confidence 5678999999999999999999975 9999999976 46699999999887 78999999986 77776
Q ss_pred --CHHHHHHHHHhccccCcEEEEE
Q 027039 162 --FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 --~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+..++++++.++|||||.+++.
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3467899999999999999874
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-15 Score=121.56 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=82.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.+.++.+|||+|||+|..+..+++.+. +++|+|+++. .+.++.+|+.++++++++||+|+++.+.
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 457889999999999999999999865 9999999864 3568999999999889999999999888
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++. ++.++++++.++|||||.+++....
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEGWDQ 143 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEEecC
Confidence 888 8999999999999999999887444
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=121.59 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=98.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~- 161 (229)
.++.+|||||||+|..+..+++.+..+++|+|+++. .+.++.+|+.++++++++||+|++..+.++.
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 121 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE 121 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc
Confidence 578899999999999999999987669999999975 2568899999988888999999999888888
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecC----------------------C--------------------cccHHHHHHHH
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEEC----------------------A--------------------GREIKQIVELF 199 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~----------------------~--------------------~~~~~~l~~l~ 199 (229)
++.++++++.++|||||.+++.+... . ..+..++.+++
T Consensus 122 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l 201 (243)
T 3bkw_A 122 DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNAL 201 (243)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHH
T ss_pred hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHH
Confidence 89999999999999999999876320 0 02567888999
Q ss_pred hcCceeEeeeee
Q 027039 200 RTSRFVDAANVT 211 (229)
Q Consensus 200 ~~~~~~~~~~~~ 211 (229)
...+|..+....
T Consensus 202 ~~aGF~~~~~~~ 213 (243)
T 3bkw_A 202 IRSGFAIEHVEE 213 (243)
T ss_dssp HHTTCEEEEEEE
T ss_pred HHcCCEeeeecc
Confidence 988887766543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=124.42 Aligned_cols=124 Identities=14% Similarity=0.031 Sum_probs=99.5
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
+......++.+|||||||+|..+..+++.+..+++++|+++. .+.++++|+.++++++++||+|++.
T Consensus 86 l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 165 (254)
T 1xtp_A 86 IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQ 165 (254)
T ss_dssp HHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEE
T ss_pred HHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEc
Confidence 333344678999999999999999999886668999999876 2568899999988888999999999
Q ss_pred cchhhh---CHHHHHHHHHhccccCcEEEEEeecCC-------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 156 HLAEAL---FPSRFVGEMERTVKIGGVCMVLMEECA-------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 156 ~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~~~-------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.+.+++ ++.++++++.++|||||.+++...... ..+..++.+++...+|..++....
T Consensus 166 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 166 WTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence 888877 368899999999999999998764211 125578889999888877665443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=122.61 Aligned_cols=118 Identities=12% Similarity=0.128 Sum_probs=96.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
+++.+|||||||+|..+..+++.+..+++|+|+++.+ +.++.+|+.++++++++||+|+++.+.+
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 4688999999999999999998865699999999762 4588999998888888999999998888
Q ss_pred hh-CH--HHHHHHHHhccccCcEEEEEeecCC------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 160 AL-FP--SRFVGEMERTVKIGGVCMVLMEECA------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 160 ~~-~~--~~~l~~~~~~LkpgG~lil~~~~~~------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+. ++ .++++++.++|||||.+++...... ..+..++.+++...+|..+.....
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 88 44 3899999999999999997553211 126788999999888877665543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.5e-15 Score=117.71 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=96.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------CeEEEcCCCC--CCCCCCceeEEEcccchhhh-CH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------PLVSRADPHN--LPFFDEAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------~~~~~~d~~~--~~~~~~~fD~V~~~~~~~~~-~~ 163 (229)
.++.+|||+|||+|..+..+++.| .+++|+|+++.+ ..++.+|+.+ .++++++||+|+++.+.+|. ++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~ 109 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP 109 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence 578899999999999999999987 599999999763 4588899887 67778999999999888888 89
Q ss_pred HHHHHHHHhccccCcEEEEEeecC---------------------------CcccHHHHHHHHhcCceeEeeee
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEEC---------------------------AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~~---------------------------~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
.++++++.++|||||.+++.+... ..++..++.+++...+|..+...
T Consensus 110 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 183 (230)
T 3cc8_A 110 WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVD 183 (230)
T ss_dssp HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEE
Confidence 999999999999999999876542 11357788888888888766544
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.3e-15 Score=113.87 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=99.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL------- 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~------- 161 (229)
.++.+|||+|||+|.++..+++.+ +|+|+|+++. .+.++++|+.+ ++++++||+|+++...+..
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~ 98 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALESHRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIG 98 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHTCSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTB
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhcccCCeEEECChhh-hcccCCCCEEEECCCCccCCcccccc
Confidence 467799999999999999999997 9999999986 45699999988 6667899999998544432
Q ss_pred ---CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEeccC
Q 027039 162 ---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRRTRL 227 (229)
Q Consensus 162 ---~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (229)
+..++++++.+.+ |||.+++.... .....++.++++..+|..+.-........+.+..+..|+
T Consensus 99 ~~~~~~~~~~~~~~~l-pgG~l~~~~~~--~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~~~~ 164 (170)
T 3q87_B 99 GGYLGREVIDRFVDAV-TVGMLYLLVIE--ANRPKEVLARLEERGYGTRILKVRKILGETVYIIKGEKS 164 (170)
T ss_dssp CCGGGCHHHHHHHHHC-CSSEEEEEEEG--GGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEEECC
T ss_pred CCcchHHHHHHHHhhC-CCCEEEEEEec--CCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEEecc
Confidence 1357888888888 99999877655 346678889999888877666655444457777776665
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.60 E-value=9e-15 Score=117.79 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=76.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------------CCeEEEcCCCCCCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------------LPLVSRADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~V~ 153 (229)
.++.+|||||||+|.++..+++. +..+++|+|+++. .+.++++|+...++++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 57889999999999999999998 4469999999975 35688999988888789999999
Q ss_pred cccchhhh-CH--HHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEAL-FP--SRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~-~~--~~~l~~~~~~LkpgG~lil~ 183 (229)
++.+.+++ ++ .++++++.++|||||.++..
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 99988888 44 58999999999999965533
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=129.87 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=96.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC-----------------------CCeEEEcCCCCC------
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS-----------------------LPLVSRADPHNL------ 142 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~-----------------------~~~~~~~d~~~~------ 142 (229)
..++.+|||||||+|..+..+++. +..+|+|+|+++. .+.++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 468899999999999999999886 3459999999863 456899999987
Q ss_pred CCCCCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCC--------------------cccHHHHHHHHhc
Q 027039 143 PFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA--------------------GREIKQIVELFRT 201 (229)
Q Consensus 143 ~~~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~--------------------~~~~~~l~~l~~~ 201 (229)
++++++||+|+++.+.++. ++..+++++.++|||||.+++...... ..+..++.+++..
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 8889999999999888888 899999999999999999987643321 1355788899998
Q ss_pred CceeEeeee
Q 027039 202 SRFVDAANV 210 (229)
Q Consensus 202 ~~~~~~~~~ 210 (229)
.+|..++.+
T Consensus 241 aGF~~v~~~ 249 (383)
T 4fsd_A 241 AGFRDVRLV 249 (383)
T ss_dssp TTCCCEEEE
T ss_pred CCCceEEEE
Confidence 888655443
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-15 Score=122.97 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------------------------CCeEEEcCCCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------------------------LPLVSRADPHNL 142 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------------------------~~~~~~~d~~~~ 142 (229)
.++.+|||+|||+|..+..|++.|+ +|+|+|+|+. .+.++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 5788999999999999999999988 9999999965 135788999998
Q ss_pred CCCC-CceeEEEcccchhhh---CHHHHHHHHHhccccCcEEEEEeecCC---------cccHHHHHHHHhc
Q 027039 143 PFFD-EAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFRT 201 (229)
Q Consensus 143 ~~~~-~~fD~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~~~---------~~~~~~l~~l~~~ 201 (229)
++++ ++||+|++..+.+++ ....+++++.++|||||++++++-... ..+..++.++|..
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~ 217 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT 217 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC
Confidence 8764 899999988666665 346799999999999999875542211 2466788899885
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=122.36 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------eEEEcCCCCCCCCCCceeEEEcccchhhh--CH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFFDEAFDVAFTAHLAEAL--FP 163 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------~~~~~d~~~~~~~~~~fD~V~~~~~~~~~--~~ 163 (229)
.++.+|||||||+|..+..+++.+. +++|+|+++.++ .++.+|+.++++++++||+|++.....+. ++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~ 131 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK 131 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred CCCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccH
Confidence 4788999999999999999999876 999999998632 38899999999988999999998644443 78
Q ss_pred HHHHHHHHhccccCcEEEEEeec
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.++++++.++|||||.+++.+..
T Consensus 132 ~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 132 DKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999999987765
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=124.14 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-----------------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------------------------------- 133 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------------------------------------- 133 (229)
.++.+|||||||+|.....++..+..+|+|+|+|+.+++
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 367899999999999655444443459999999987542
Q ss_pred ----EEEcCCCC-CCC-----CCCceeEEEcccchhh----h-CHHHHHHHHHhccccCcEEEEEeecC-----------
Q 027039 134 ----VSRADPHN-LPF-----FDEAFDVAFTAHLAEA----L-FPSRFVGEMERTVKIGGVCMVLMEEC----------- 187 (229)
Q Consensus 134 ----~~~~d~~~-~~~-----~~~~fD~V~~~~~~~~----~-~~~~~l~~~~~~LkpgG~lil~~~~~----------- 187 (229)
++++|+.+ +|+ ++++||+|+++.+.++ . ++.++++++.++|||||.+++.....
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 34448877 664 3467999999988887 5 67899999999999999999763211
Q ss_pred --CcccHHHHHHHHhcCceeEeeee
Q 027039 188 --AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 188 --~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
...+..++.+++...+|..+...
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEEEee
Confidence 12467889999998888665543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-15 Score=122.77 Aligned_cols=94 Identities=15% Similarity=0.254 Sum_probs=80.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCC-CCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPF-FDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~-~~~~fD~V~~~ 155 (229)
.+.++.+|||||||+|..+..++..+..+++|+|+++.+ +.++++|+.+.++ ++++||+|++.
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 457899999999999999999888876799999999762 4688999999887 68899999998
Q ss_pred cchhh----h-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEA----L-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~----~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+.++ . ++.++++++.++|||||.+++.+..
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 76655 3 5688999999999999999987654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=116.45 Aligned_cols=89 Identities=28% Similarity=0.263 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-CH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FP 163 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~ 163 (229)
.++.+|||+|||+|..+..+ +..+++|+|+++. .+.++++|+.++++++++||+|+++++.++. ++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 111 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV 111 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH
T ss_pred CCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH
Confidence 48899999999999999888 4459999999976 4568999999999988999999999888888 89
Q ss_pred HHHHHHHHhccccCcEEEEEeec
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.++++++.++|||||.+++.+..
T Consensus 112 ~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 112 ERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEEEecC
Confidence 99999999999999999988755
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-15 Score=124.73 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=102.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHH--hCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFN--SIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~--~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
.++++.+|||||||+|..+..++ ..+..+|+|+|+++.+ +.++++|+.+++++ ++||+|++
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~ 193 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTS 193 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEE
Confidence 35789999999999999999995 3355699999999761 66999999999887 99999999
Q ss_pred ccchhhh-CHHH---HHHHHHhccccCcEEEEEeecC------------------------------------CcccHHH
Q 027039 155 AHLAEAL-FPSR---FVGEMERTVKIGGVCMVLMEEC------------------------------------AGREIKQ 194 (229)
Q Consensus 155 ~~~~~~~-~~~~---~l~~~~~~LkpgG~lil~~~~~------------------------------------~~~~~~~ 194 (229)
+.+.++. ++.. +++++.++|||||.+++..... .-++..+
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence 9888887 7755 7999999999999998765221 0146788
Q ss_pred HHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 195 IVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 195 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
+.++++..+|..++...........++.+|
T Consensus 274 ~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 274 TRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999988777654444334444443
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-14 Score=116.15 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEccc-chh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAH-LAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~-~~~ 159 (229)
.++.+|||+|||+|..+..+++.+. +++|+|+++. .+.++++|+.+++++ ++||+|+++. +.+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccc
Confidence 4788999999999999999999875 9999999976 366889999988876 8999999987 777
Q ss_pred hh----CHHHHHHHHHhccccCcEEEEEe
Q 027039 160 AL----FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 160 ~~----~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
|. ++.++++++.++|||||.+++.+
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 76 35789999999999999998744
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-15 Score=115.54 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||+|||+|..+..+++.+. +++|+|+++. .+.++.+|+.+.++ +++||+|+++.+.+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGG
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhh
Confidence 4678999999999999999999976 9999999875 35688999999887 88999999998777
Q ss_pred hh---CHHHHHHHHHhccccCcEEEEEeecC-----------CcccHHHHHHHHhcCceeEeee
Q 027039 160 AL---FPSRFVGEMERTVKIGGVCMVLMEEC-----------AGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 160 ~~---~~~~~l~~~~~~LkpgG~lil~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+. ++.++++++.++|||||.++++.... ...+..++.++|...+.+...+
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~ 172 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNE 172 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTTSEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcCCeEEEecc
Confidence 76 46889999999999999988665321 1236678888988866665544
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-14 Score=112.00 Aligned_cols=115 Identities=13% Similarity=0.117 Sum_probs=85.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C--CCeEEEecCCCC----CCeEEEcCCCCCC----------------------
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G--VADVTGVELMDS----LPLVSRADPHNLP---------------------- 143 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g--~~~v~~vD~s~~----~~~~~~~d~~~~~---------------------- 143 (229)
.++++.+|||+|||+|.++..+++. + ..+|+|+|+++. .+.++++|+.+.+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 98 (201)
T 2plw_A 19 FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKL 98 (201)
T ss_dssp CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHH
Confidence 4578899999999999999999987 5 469999999986 3678999998876
Q ss_pred ---CCCCceeEEEcccchhh-----hCH-------HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEee
Q 027039 144 ---FFDEAFDVAFTAHLAEA-----LFP-------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 144 ---~~~~~fD~V~~~~~~~~-----~~~-------~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
+++++||+|+++...++ .+. .++++++.++|||||.+++.+.. .....++...++. .+..+.
T Consensus 99 ~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~l~~~l~~-~f~~v~ 175 (201)
T 2plw_A 99 KEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL--GSQTNNLKTYLKG-MFQLVH 175 (201)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC--STTHHHHHHHHHT-TEEEEE
T ss_pred HhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC--CCCHHHHHHHHHH-HHheEE
Confidence 56789999999743222 121 24789999999999998875544 3345566666554 354444
Q ss_pred ee
Q 027039 209 NV 210 (229)
Q Consensus 209 ~~ 210 (229)
.+
T Consensus 176 ~~ 177 (201)
T 2plw_A 176 TT 177 (201)
T ss_dssp EC
T ss_pred EE
Confidence 43
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-14 Score=116.46 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=99.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEc-ccchhhh-C
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFT-AHLAEAL-F 162 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~-~~~~~~~-~ 162 (229)
.++.+|||+|||+|..+..+++.+. +++|+|+++. .+.++.+|+.++++ +++||+|+| ..+.+++ +
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 6789999999999999999998865 9999999976 36789999999887 789999995 4466655 3
Q ss_pred ---HHHHHHHHHhccccCcEEEEEeecC----------------------------------------------------
Q 027039 163 ---PSRFVGEMERTVKIGGVCMVLMEEC---------------------------------------------------- 187 (229)
Q Consensus 163 ---~~~~l~~~~~~LkpgG~lil~~~~~---------------------------------------------------- 187 (229)
+.++++++.++|||||.+++.....
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 4789999999999999988753110
Q ss_pred ------CcccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 188 ------AGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 188 ------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
..++..++.+++...+| ++..+....+....++.+|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF-~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGL-RVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTE-EEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCC-EEEEeEcCCCCceEEEEec
Confidence 01246889999999999 6777766655555555554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=119.01 Aligned_cols=124 Identities=12% Similarity=0.135 Sum_probs=91.9
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC-------------CeEEEcCCCC---CCCCCCceeE
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL-------------PLVSRADPHN---LPFFDEAFDV 151 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~-------------~~~~~~d~~~---~~~~~~~fD~ 151 (229)
+...++||++|||+|||+|.++..+++. +.++|+|+|+++.+ +..+.+|... .++..+++|+
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 3446799999999999999999999987 56899999999873 3466777655 4567789999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCC-------cccHHHHHHHHhcCceeEeeeeeecC
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA-------GREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
|++. +.++-++..++.++.+.|||||++++...... ...+.+..+.+...+|.-++.++...
T Consensus 151 Vf~d-~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 151 LYAD-VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDP 219 (233)
T ss_dssp EEEC-CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred EEEe-ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 9873 33433678899999999999999998764432 22344445556667776666655543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=114.52 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccc--h
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHL--A 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~--~ 158 (229)
+++.+|||+|||+|..+..+++.+. +++|+|+++. .+.++.+|+.++++++++||+|+++.. .
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 5688999999999999999999866 9999999974 367999999998888889999999876 4
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++. ++.++++++.++|||||.+++....
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 444 6788999999999999999877543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=117.86 Aligned_cols=114 Identities=20% Similarity=0.249 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
++.+|||||||+|..+..++..+. +|+|+|+++. .+.++++|+.+.+ ++++||+|+++.+.+
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 345999999999999999988765 8999999976 2568999999977 456999999998777
Q ss_pred hh---CHHHHHHHHHhccccCcEEEEEeecCC--------cccHHHHHHHHhcCceeEeeeee
Q 027039 160 AL---FPSRFVGEMERTVKIGGVCMVLMEECA--------GREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 160 ~~---~~~~~l~~~~~~LkpgG~lil~~~~~~--------~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
++ ++.++++++.++|||||.+++...... ..+..++.+++...+|..+..-.
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 66 568899999999999999887654321 23678899999988887665443
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=114.87 Aligned_cols=123 Identities=12% Similarity=0.121 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
++.+|||+|||+|..+..++.. +..+++++|+++. .+.++++|+.+.+ ++++||+|+++.+.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEeccC-
Confidence 5789999999999999999986 5569999999975 2568899998876 46799999997643
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeec--CCeeEEEEEEec
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVN--GSNMTRILMRRT 225 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 225 (229)
++..+++++.+.|||||.+++.... ....++.++++..+.++++.+..+ +...+.++++++
T Consensus 143 --~~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 143 --SLNDMVSWCHHLPGEQGRFYALKGQ---MPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp --SHHHHHHHHTTSEEEEEEEEEEESS---CCHHHHHTSCTTEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred --CHHHHHHHHHHhcCCCcEEEEEeCC---CchHHHHHHhcCCceeeeeeeccCCCCCceEEEEEEec
Confidence 4789999999999999999877554 345667777764455555544433 444455555543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-15 Score=124.50 Aligned_cols=132 Identities=15% Similarity=0.213 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------------------------------------------- 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~------------------------------------------- 130 (229)
.++.+|||||||+|..+..++.. +..+|+|+|+++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46889999999999999999988 5569999999864
Q ss_pred ------------------------------CCeEEEcCCCCCC-----CCCCceeEEEcccchhhh-------CHHHHHH
Q 027039 131 ------------------------------LPLVSRADPHNLP-----FFDEAFDVAFTAHLAEAL-------FPSRFVG 168 (229)
Q Consensus 131 ------------------------------~~~~~~~d~~~~~-----~~~~~fD~V~~~~~~~~~-------~~~~~l~ 168 (229)
.+.++++|+...+ +.+++||+|+|..+.+++ .+.++++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 3557778877543 567899999999776444 5688999
Q ss_pred HHHhccccCcEEEEEeecCCc-------------------ccHHHHHHHHhc--CceeEeeeeee-----cCCeeEEEEE
Q 027039 169 EMERTVKIGGVCMVLMEECAG-------------------REIKQIVELFRT--SRFVDAANVTV-----NGSNMTRILM 222 (229)
Q Consensus 169 ~~~~~LkpgG~lil~~~~~~~-------------------~~~~~l~~l~~~--~~~~~~~~~~~-----~~~~~~~~~~ 222 (229)
++.++|||||.+++....... ....++.+.+.. .+|..++.+.. .|.+....++
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~~r~i~~~ 284 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLF 284 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-----------CCCEEE
T ss_pred HHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEeccCCCCCCCccceEEEE
Confidence 999999999998875332110 012345566666 88877766543 5676666776
Q ss_pred Eecc
Q 027039 223 RRTR 226 (229)
Q Consensus 223 ~~~~ 226 (229)
+|+.
T Consensus 285 ~k~~ 288 (292)
T 3g07_A 285 HKAR 288 (292)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 6654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-15 Score=122.74 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCC---CCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFF---DEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~---~~~fD~V~~~ 155 (229)
.++.+|||||||+|..+..++.. +..+|+++|+++. .+.++++|+++++.. +++||+|+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 57889999999999999999987 6679999999976 356889998887643 4799999997
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc--CceeEeeeeeecCC--eeEEEEEEe
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT--SRFVDAANVTVNGS--NMTRILMRR 224 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~~--~~~~~~~~~ 224 (229)
.+.. ...+++++.++|||||++++........+..++...++. .+..++..+..++. ....+++++
T Consensus 159 a~~~---~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 159 AVAP---LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp SSCC---HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CcCC---HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEe
Confidence 6543 788999999999999998876654334444455555553 44456666666653 334444454
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-15 Score=120.47 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=93.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCC---CCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFF---DEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~---~~~fD~V~~~ 155 (229)
.++.+|||||||+|..+..++.. +..+|+|+|+++. .+.++++|+.++++. +++||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 57889999999999999999864 4459999999984 356889998887754 6799999997
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeE--eeeeeecC--CeeEEEEEEec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD--AANVTVNG--SNMTRILMRRT 225 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~--~~~~~~~~~~~ 225 (229)
.+. ++..+++++.++|||||.+++...........++.+.++..++.. +..+..+. .....+++++.
T Consensus 149 ~~~---~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 149 AVA---RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp CCS---CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred ccC---CHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence 643 588999999999999999987654433344556666777666644 33444443 33344444443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=119.39 Aligned_cols=100 Identities=21% Similarity=0.138 Sum_probs=82.5
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCC
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~ 145 (229)
..+..++....++++.+|||||||+|..+..+++. |. +|+|+|+++. .+.++.+|+.++|
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 127 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 127 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--
Confidence 34444555555688999999999999999999955 76 9999999965 3558888887765
Q ss_pred CCceeEEEcccchhhh---CHHHHHHHHHhccccCcEEEEEeec
Q 027039 146 DEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++||+|++..+.+|. ++..+++++.++|||||.+++....
T Consensus 128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 789999999888877 5789999999999999999987644
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=114.56 Aligned_cols=116 Identities=15% Similarity=0.215 Sum_probs=92.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
+++ +|||||||+|..+..+++.+. +++|+|+++. .+.++.+|+.+.++++++||+|+++.....
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 106 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLP 106 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCC
Confidence 667 999999999999999999876 9999999976 355888999999888899999999643222
Q ss_pred h-CHHHHHHHHHhccccCcEEEEEeecCC--------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 161 L-FPSRFVGEMERTVKIGGVCMVLMEECA--------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 161 ~-~~~~~l~~~~~~LkpgG~lil~~~~~~--------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
. ++.++++++.++|||||.+++...... .++..++.+++...+.+.+.....
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~Gf~v~~~~~~~~ 173 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELPSLNWLIANNLER 173 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCSSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhcCceEEEEEEEEe
Confidence 2 578899999999999999998864321 246778888888666666666543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=117.84 Aligned_cols=119 Identities=8% Similarity=0.008 Sum_probs=93.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------------------------------------
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------------------------------- 131 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------------------------------- 131 (229)
...++.+|||+|||+|..+..++..+..+|+|+|+++.+
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 335778999999999999999988865699999999751
Q ss_pred ---C-eEEEcCCCCCC-CCC---CceeEEEcccchh----hh-CHHHHHHHHHhccccCcEEEEEeecC-----------
Q 027039 132 ---P-LVSRADPHNLP-FFD---EAFDVAFTAHLAE----AL-FPSRFVGEMERTVKIGGVCMVLMEEC----------- 187 (229)
Q Consensus 132 ---~-~~~~~d~~~~~-~~~---~~fD~V~~~~~~~----~~-~~~~~l~~~~~~LkpgG~lil~~~~~----------- 187 (229)
+ .++++|+.+.+ +++ ++||+|+++.+.+ +. ++..+++++.++|||||.+++.....
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 212 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence 4 78889998854 355 8999999997777 44 57889999999999999998765321
Q ss_pred --CcccHHHHHHHHhcCceeEeeeee
Q 027039 188 --AGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 188 --~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
...+..++.+++...+|..+....
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccCHHHHHHHHHHCCCEEEEEEE
Confidence 123566889999988887665543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=115.17 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=76.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------------CCeEEEcCCCCCCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------------LPLVSRADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~V~ 153 (229)
.++.+|||||||+|.++..+++. +..+++|+|+++. .+.++++|+...+.++++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 57889999999999999999998 5469999999975 25688999988777778999999
Q ss_pred cccchhhh-CH--HHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEAL-FP--SRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~-~~--~~~l~~~~~~LkpgG~lil~ 183 (229)
++.+.+++ ++ .++++++.++|||||.+++.
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 99988888 44 68999999999999966644
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-15 Score=117.79 Aligned_cols=91 Identities=16% Similarity=0.065 Sum_probs=79.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
...++.+|||+|||+|.++..+++.+. +++|+|+++. .+.++++|+.+.+ ++++||+|+++.+.+
T Consensus 48 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 48 SSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLY 125 (216)
T ss_dssp TTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred ccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence 345778999999999999999999875 9999999975 3568999999988 688999999998888
Q ss_pred hh-CH---HHHHHHHHhccccCcEEEEEee
Q 027039 160 AL-FP---SRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 160 ~~-~~---~~~l~~~~~~LkpgG~lil~~~ 185 (229)
|+ ++ .++++++.++|||||.+++.+.
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 88 66 5679999999999999997653
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=123.08 Aligned_cols=89 Identities=11% Similarity=0.175 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHh--CCCCeEEEecCCCC-----------------CCeEEEcCCCCCCCCC------Cce
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNS--IGVADVTGVELMDS-----------------LPLVSRADPHNLPFFD------EAF 149 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~--~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~~~~~------~~f 149 (229)
.++.+|||||||+|..+..+++ .+..+|+|+|+++. .+.++++|+.++++++ ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 5889999999999999999996 34569999999864 4568999999988877 899
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+|+++.+.++.++.++++++.++|||||.+++.
T Consensus 115 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 115 DMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999998877779999999999999999998873
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=120.20 Aligned_cols=93 Identities=14% Similarity=0.246 Sum_probs=81.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+.++.+|||||||+|.++..+++. + ..+|+|+|+++. .+.++++|+.++++ +++||+|+++.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~ 97 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHA 97 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEES
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEECC
Confidence 3478899999999999999999988 4 359999999976 34589999999887 56999999998
Q ss_pred chhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.++. ++.++++++.++|||||.+++....
T Consensus 98 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 88888 8999999999999999999876544
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-14 Score=112.61 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=79.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
+.++.+|||+|||+|..+..+++.+..+++|+|+++. .+.++++|+.++++++++||+|+++...++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 3788999999999999999999986559999999975 366899999998888899999998755433
Q ss_pred h----------------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 161 L----------------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 161 ~----------------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
. ++.++++++.++|||||.+++....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 2 4588999999999999998876654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=113.76 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCChhhHH-HHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMA-FNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~-l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||+|||+|..+.. ++..+. +++|+|+++. .+.++++|+.++++++++||+|+++.+.+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 6789999999999998544 445565 9999999975 35689999999998889999999987666
Q ss_pred hh---CHHHHHHHHHhccccCcEEEEEeecCC---------------------------cccHHHHHHHHhcCceeEeee
Q 027039 160 AL---FPSRFVGEMERTVKIGGVCMVLMEECA---------------------------GREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 160 ~~---~~~~~l~~~~~~LkpgG~lil~~~~~~---------------------------~~~~~~l~~l~~~~~~~~~~~ 209 (229)
|. ++.++++++.++|||||.+++...... ..+.+++.++|...++....+
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~ 180 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKED 180 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeee
Confidence 65 468899999999999999988764311 125567888999888877665
Q ss_pred e
Q 027039 210 V 210 (229)
Q Consensus 210 ~ 210 (229)
.
T Consensus 181 ~ 181 (209)
T 2p8j_A 181 R 181 (209)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-14 Score=111.56 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=97.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
++++.+|||+|||+|..+..+++.+..+++|+|+++.+ +.+.++|+.+. .+++||+|+++...
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcH
Confidence 36889999999999999999998877799999999762 67888998764 36899999998655
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEecc
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (229)
++ ..++++++.++|||||.+++.... ..+...+.+.+...+|..+......++ ..++.++..
T Consensus 136 ~~--~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~Gf~~~~~~~~~~w--~~~~~~~~~ 197 (205)
T 3grz_A 136 EI--LLDLIPQLDSHLNEDGQVIFSGID--YLQLPKIEQALAENSFQIDLKMRAGRW--IGLAISRKH 197 (205)
T ss_dssp HH--HHHHGGGSGGGEEEEEEEEEEEEE--GGGHHHHHHHHHHTTEEEEEEEEETTE--EEEEEEECC
T ss_pred HH--HHHHHHHHHHhcCCCCEEEEEecC--cccHHHHHHHHHHcCCceEEeeccCCE--EEEEEeccc
Confidence 53 478899999999999998875433 346778889999999887776665555 344444443
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-14 Score=112.86 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-CHHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSR 165 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~ 165 (229)
.++.+|||+|||+|..+..++.. +|+|+++. .+.++.+|+.++++++++||+|++..+.++. ++.+
T Consensus 46 ~~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (219)
T 1vlm_A 46 LPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 120 (219)
T ss_dssp CCSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHH
Confidence 34889999999999999988765 89999976 3568899999999888999999999888888 8999
Q ss_pred HHHHHHhccccCcEEEEEeecCC---------------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 166 FVGEMERTVKIGGVCMVLMEECA---------------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 166 ~l~~~~~~LkpgG~lil~~~~~~---------------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+++++.++|||||.+++...... ..+..++.+++...+|..+.....
T Consensus 121 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 121 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 99999999999999998765421 136678889999888876665433
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=115.49 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------CCeEEEcCCCCC---CCCC-CceeEEEcccchhhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------LPLVSRADPHNL---PFFD-EAFDVAFTAHLAEAL 161 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------~~~~~~~d~~~~---~~~~-~~fD~V~~~~~~~~~ 161 (229)
.++.+|||||||+|..+..+++.+. +++|+|+++. ...+..+|+.++ ++.+ ++||+|+++.+.++.
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~~ 129 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLHQ 129 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCCSS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhhhh
Confidence 5679999999999999999999976 9999999986 345778887765 5444 459999999777744
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCC-----------------------------cccHHHHHHHHhcCceeEeeeee
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECA-----------------------------GREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~-----------------------------~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
++..+++++.++|||||.+++...... ..+..++.+++...+|..+.-..
T Consensus 130 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 130 DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 889999999999999999998764210 12678899999999998776543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=116.28 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=82.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCCC----CCCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNL----PFFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~~----~~~~~~fD~V~~ 154 (229)
.++++.+|||+|||+|..+..+++. |.++|+|+|+|+. .+.++.+|+.+. ++. ++||+|++
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 4578999999999999999999887 5569999999985 244677888773 444 79999999
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEeecCC---cccHHHHH----HHHhcCceeEeeeeee
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA---GREIKQIV----ELFRTSRFVDAANVTV 212 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~---~~~~~~l~----~l~~~~~~~~~~~~~~ 212 (229)
+ +..+.....+++++.++|||||++++.+.... ..+.+++. +.+++. |.-++.++.
T Consensus 133 ~-~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 133 D-IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred e-ccChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecC
Confidence 7 22222344568999999999999998863311 11223322 225665 666666555
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-14 Score=111.50 Aligned_cols=108 Identities=12% Similarity=0.066 Sum_probs=87.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.++++.+|||+|||+|..+..+++. +..+++++|+++. .++++++|+.+.....++||+|+++.
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~ 116 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG 116 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence 4578999999999999999999988 4569999999976 35588899876543447899999976
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
..+ ++.++++++.+.|||||++++.... ..+..++.+.++..++
T Consensus 117 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 117 SGG--MLEEIIDAVDRRLKSEGVIVLNAVT--LDTLTKAVEFLEDHGY 160 (204)
T ss_dssp CTT--CHHHHHHHHHHHCCTTCEEEEEECB--HHHHHHHHHHHHHTTC
T ss_pred CCc--CHHHHHHHHHHhcCCCeEEEEEecc--cccHHHHHHHHHHCCC
Confidence 444 6889999999999999998876544 3456677788887776
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=120.30 Aligned_cols=100 Identities=17% Similarity=0.069 Sum_probs=83.3
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCC
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~ 145 (229)
..+..++....++++.+|||||||+|..+..+++. |. +|+|+|+++. .+.++.+|+.++
T Consensus 59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--- 134 (302)
T 3hem_A 59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--- 134 (302)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---
T ss_pred HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---
Confidence 33444455556789999999999999999999998 84 9999999976 255888898776
Q ss_pred CCceeEEEcccchhhh-CH---------HHHHHHHHhccccCcEEEEEeec
Q 027039 146 DEAFDVAFTAHLAEAL-FP---------SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~-~~---------~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+++||+|+++.+.+|. +| ..+++++.++|||||.+++....
T Consensus 135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 185 (302)
T 3hem_A 135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 185 (302)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 6899999999888877 55 78999999999999999987654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.5e-15 Score=122.69 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC-------------------eEEEcCCCCCC---CCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-------------------LVSRADPHNLP---FFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~-------------------~~~~~d~~~~~---~~~~~fD~V 152 (229)
.++.+|||||||+|..+..+++.+. +|+|+|+|+.++ .+..+|+.+++ +++++||+|
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence 5788999999999999999999977 999999997632 36788888877 788999999
Q ss_pred Ecc-cchhhh-C-------HHHHHHHHHhccccCcEEEEEeec
Q 027039 153 FTA-HLAEAL-F-------PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 153 ~~~-~~~~~~-~-------~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++. .+.+|+ + +.++++++.++|||||.+++.+..
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 997 777777 7 899999999999999999987664
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=112.80 Aligned_cols=136 Identities=10% Similarity=0.128 Sum_probs=94.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCCC-CCCCceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLP-FFDEAFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~~-~~~~~fD~V~ 153 (229)
.++++.+|||+|||+|..+..+++. +.++++|+|+++. .+.++++|+.+++ +.+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 3478899999999999999999987 4569999999975 3558899988875 5678999999
Q ss_pred cccch---------hhh-CHHHHHHHHHhccccCcEEEEEeecC---CcccHHHHHHHHhc-----CceeEeeeeeecCC
Q 027039 154 TAHLA---------EAL-FPSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIVELFRT-----SRFVDAANVTVNGS 215 (229)
Q Consensus 154 ~~~~~---------~~~-~~~~~l~~~~~~LkpgG~lil~~~~~---~~~~~~~l~~l~~~-----~~~~~~~~~~~~~~ 215 (229)
++... ... ++.++++++.++|||||++++..... .......+.+.+.. ........+...+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 178 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANC 178 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSC
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccC
Confidence 87422 111 34679999999999999998776332 12233444454442 22233333334455
Q ss_pred eeEEEEEEeccCC
Q 027039 216 NMTRILMRRTRLP 228 (229)
Q Consensus 216 ~~~~~~~~~~~~~ 228 (229)
-...++.+++++|
T Consensus 179 pp~~~~~~~~~~~ 191 (197)
T 3eey_A 179 PPILVCIEKISEG 191 (197)
T ss_dssp CCEEEEEEECCSS
T ss_pred CCeEEEEEEcccc
Confidence 5566666776654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.4e-14 Score=110.29 Aligned_cols=93 Identities=13% Similarity=0.201 Sum_probs=71.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCC-CCCCceeEEEcc-
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLP-FFDEAFDVAFTA- 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~-~~~~~fD~V~~~- 155 (229)
.++++.+|||+|||+|..+..+++.+ .+|+|+|+++.+ +.+++++...++ +.+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 45789999999999999999999984 599999999862 457777776643 457899999987
Q ss_pred cchhh--------h-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEA--------L-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~--------~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..... . ...++++++.++|||||.+++....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 22221 1 3467889999999999999877654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-13 Score=104.94 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=82.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCC----CCCeEEEcCCCCCC--------CCCCceeEEEcccch
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMD----SLPLVSRADPHNLP--------FFDEAFDVAFTAHLA 158 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~----~~~~~~~~d~~~~~--------~~~~~fD~V~~~~~~ 158 (229)
..+++.+|||+|||+|..+..+++. | ..+++++|+++ ..+.++.+|+.+.+ +++++||+|+++...
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~ 98 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP 98 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCc
Confidence 3578899999999999999999887 4 36999999998 23458889998876 777899999997544
Q ss_pred hhh-CH-----------HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc
Q 027039 159 EAL-FP-----------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT 201 (229)
Q Consensus 159 ~~~-~~-----------~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~ 201 (229)
++. .+ .++++++.++|||||.+++.... ......+.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~ 151 (180)
T 1ej0_A 99 NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ--GEGFDEYLREIRS 151 (180)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES--STTHHHHHHHHHH
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec--CCcHHHHHHHHHH
Confidence 333 22 68999999999999998876654 3344455555544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=116.88 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------------------CCeEEEcCCCCCCCCCCceeEEEcc-c
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------------LPLVSRADPHNLPFFDEAFDVAFTA-H 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------------~~~~~~~d~~~~~~~~~~fD~V~~~-~ 156 (229)
++.+|||||||+|.++..+++.+. +|+|+|+++. .+.++++|+.++++ +++||+|++. .
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCc
Confidence 445999999999999999999975 9999999975 25699999999887 7899999865 5
Q ss_pred chhhhC---HHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LAEALF---PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.++.+ ..++++++.++|||||.+++.+..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 555555 378999999999999999987644
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-14 Score=112.87 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=88.3
Q ss_pred cCCCCCeEEEEcCC-CChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCC-CCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAG-AGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNL-PFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G-~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~-~~~~~~fD~V~~~~ 156 (229)
.++++.+|||+||| +|..+..++.....+|+|+|+++. .+.++++|+... ++++++||+|+++.
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 34789999999999 999999999883349999999986 256899997543 45678999999973
Q ss_pred chhhh--------------------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 157 LAEAL--------------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 157 ~~~~~--------------------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
..... ...++++++.++|||||++++.+... .....++.+.+++.++ .+..+
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~l~~~g~-~~~~~ 203 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-EKLLNVIKERGIKLGY-SVKDI 203 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-HHHHHHHHHHHHHTTC-EEEEE
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-HhHHHHHHHHHHHcCC-ceEEE
Confidence 22111 14789999999999999999876642 2456778888887777 44444
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=113.55 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=76.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CC-CeEEEecCCCC----------------------CCeEEEcC---CCCCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDS----------------------LPLVSRAD---PHNLPFF 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~-~~v~~vD~s~~----------------------~~~~~~~d---~~~~~~~ 145 (229)
.++++.+|||||||+|.++..+++. |. .+|+|+|+++. .+.++.+| ...+|++
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 119 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA 119 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence 5678999999999999999999987 42 59999999984 25578888 4567778
Q ss_pred CCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEe
Q 027039 146 DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+++||+|+++.+.++. ++..+++.+.++++|||.+++..
T Consensus 120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999999888888 78777777777777799988764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.3e-14 Score=118.50 Aligned_cols=101 Identities=16% Similarity=0.040 Sum_probs=83.9
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCC
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPF 144 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~ 144 (229)
...+..++....+.++.+|||||||+|..+..+++. |. +|+|+|+++. .+.++.+|+.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 153 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA- 153 (318)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-
Confidence 344445555556688999999999999999999988 77 9999999976 2568888887765
Q ss_pred CCCceeEEEcccchhhh---CHHHHHHHHHhccccCcEEEEEeec
Q 027039 145 FDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++||+|++..+.++. ++.++++++.++|||||.+++....
T Consensus 154 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 154 --EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp --CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred --CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 789999999888777 5789999999999999999987654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=118.38 Aligned_cols=113 Identities=16% Similarity=0.262 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.++.+|||+|||+|..+..+++.|. +|+|+|+++. .+.++.+|+.+.++ +++||+|+++.+.++
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 4789999999999999999999977 9999999986 35688999998877 789999999988887
Q ss_pred hC---HHHHHHHHHhccccCcEEEEEeecCC-----------cccHHHHHHHHhcCceeEeee
Q 027039 161 LF---PSRFVGEMERTVKIGGVCMVLMEECA-----------GREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 161 ~~---~~~~l~~~~~~LkpgG~lil~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~ 209 (229)
.+ ...+++++.++|||||.++++..... ..+..++.++|...+++...+
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 259 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFLEYNE 259 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTTSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcCCEEEEEEc
Confidence 73 35899999999999999887665321 234667888998877766643
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=107.32 Aligned_cols=131 Identities=15% Similarity=0.210 Sum_probs=91.3
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----CCeEEEcCCCCCCCC-------C----CceeEEEccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----LPLVSRADPHNLPFF-------D----EAFDVAFTAH 156 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----~~~~~~~d~~~~~~~-------~----~~fD~V~~~~ 156 (229)
..++++.+|||+|||+|.++..+++. .++|+|+|+++. .+.++++|+.+.+.. . ++||+|+++.
T Consensus 21 ~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~ 99 (191)
T 3dou_A 21 RVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDA 99 (191)
T ss_dssp CCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred CCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCC
Confidence 34588999999999999999999998 459999999986 467999999886521 1 4999999962
Q ss_pred c--------hhhh----CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee----cCCeeEEE
Q 027039 157 L--------AEAL----FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV----NGSNMTRI 220 (229)
Q Consensus 157 ~--------~~~~----~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~~~~~ 220 (229)
. ..+. ....+++.+.++|||||.+++.+-. .....++...++. .|..++.++- .+|+..-+
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~--~~~~~~~~~~l~~-~F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ--GDMTNDFIAIWRK-NFSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC--STHHHHHHHHHGG-GEEEEEEECC------CCEEEE
T ss_pred CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC--CCCHHHHHHHHHH-hcCEEEEECCCCccCCCceEEE
Confidence 1 1111 1256789999999999998876654 3344566666653 4666655433 35554444
Q ss_pred EEEecc
Q 027039 221 LMRRTR 226 (229)
Q Consensus 221 ~~~~~~ 226 (229)
+.+..|
T Consensus 177 v~~~~~ 182 (191)
T 3dou_A 177 MFFGFK 182 (191)
T ss_dssp EEEEEC
T ss_pred EEeeec
Confidence 444433
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-14 Score=121.58 Aligned_cols=92 Identities=9% Similarity=0.022 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCChhhHHH----HhC-CCCeE--EEecCCCCCCe------------------EEEcCCCCCC------
Q 027039 95 FNHSKVLCVSAGAGHEVMAF----NSI-GVADV--TGVELMDSLPL------------------VSRADPHNLP------ 143 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l----~~~-g~~~v--~~vD~s~~~~~------------------~~~~d~~~~~------ 143 (229)
.++.+|||||||+|..+..+ +.. +...+ +|+|+|++|++ +..+++.+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 56789999999999766533 332 33344 99999976332 2233443332
Q ss_pred CCCCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 144 FFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+++++||+|+++++.++. ++.+++++++++|||||.+++....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 568899999999999999 8999999999999999999987543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=107.53 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=82.8
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CC---------CeEEEecCCCCC----CeEE-EcCCCCCC--------CCCCc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GV---------ADVTGVELMDSL----PLVS-RADPHNLP--------FFDEA 148 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~---------~~v~~vD~s~~~----~~~~-~~d~~~~~--------~~~~~ 148 (229)
..++++.+|||+|||+|.++..+++. |. .+|+|+|+++.. +.++ ++|+.+.+ +++++
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCC
Confidence 34688999999999999999999987 53 699999999864 5678 88877643 34568
Q ss_pred eeEEEccc----chhhh-CH-------HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 149 FDVAFTAH----LAEAL-FP-------SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 149 fD~V~~~~----~~~~~-~~-------~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
||+|+++. ..++. +. ..+++++.++|||||.+++.+.. .....++.+.++. .+..+..+
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~-~f~~v~~~ 168 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA--GSQSRRLQRRLTE-EFQNVRII 168 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC--SGGGHHHHHHHHH-HEEEEEEE
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC--CccHHHHHHHHHH-HhcceEEE
Confidence 99999853 12222 23 47899999999999998876543 3344555555543 24444433
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=111.84 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=90.8
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCC----CCCCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHN----LPFFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~----~~~~~~~fD~V~ 153 (229)
..++++.+|||+|||+|..+..+++. |.++|+|+|+++. .+.++.+|+.+ .++. ++||+|+
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~ 148 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIY 148 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEE
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEE
Confidence 34578899999999999999999988 6569999999975 34588899988 7765 7899999
Q ss_pred cccchhhhCH---HHHHHHHHhccccCcEEEEEeecCCcc--------cHHHHHHHHhcCceeEeeeeeec--CCeeEEE
Q 027039 154 TAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEECAGR--------EIKQIVELFRTSRFVDAANVTVN--GSNMTRI 220 (229)
Q Consensus 154 ~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~~~~~--------~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~ 220 (229)
. ++ .++ ..+++++.+.|||||.+++.+...... ..+++. .+...+|..++..... ......+
T Consensus 149 ~-~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v 223 (230)
T 1fbn_A 149 E-DV---AQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMF 223 (230)
T ss_dssp E-CC---CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEE
T ss_pred E-ec---CChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEE
Confidence 3 22 134 778999999999999999865331111 113444 6666666555544433 2333455
Q ss_pred EEEecc
Q 027039 221 LMRRTR 226 (229)
Q Consensus 221 ~~~~~~ 226 (229)
++++++
T Consensus 224 ~~~k~~ 229 (230)
T 1fbn_A 224 VGIWEG 229 (230)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 555543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=107.28 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=85.2
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------C--CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------L--PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~--~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..+++.+|||+|||+|..+..+++.+ .+++|+|+++. . +.++.+|+.+ ++++++||+|+++
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~ 126 (194)
T 1dus_A 49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITN 126 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEEC
T ss_pred ccCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEEC
Confidence 34688899999999999999999884 49999999875 1 6788899887 3457899999998
Q ss_pred cchhh-h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 156 HLAEA-L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 156 ~~~~~-~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
...++ . ...++++++.+.|||||.+++..... ....++.+.++.. +..++.+
T Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~-~~~~~~~ 180 (194)
T 1dus_A 127 PPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK--QGAKSLAKYMKDV-FGNVETV 180 (194)
T ss_dssp CCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST--HHHHHHHHHHHHH-HSCCEEE
T ss_pred CCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC--CChHHHHHHHHHH-hcceEEE
Confidence 66554 2 56889999999999999999877763 2333344444433 3333333
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=117.34 Aligned_cols=105 Identities=11% Similarity=0.121 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCC-CCCCCC-CCceeEEEcccchhhhC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADP-HNLPFF-DEAFDVAFTAHLAEALF 162 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~-~~~~~~-~~~fD~V~~~~~~~~~~ 162 (229)
+++.+|||||||+|..+..+++.+. +|+|+|+++. .+.++++|+ ..+|++ +++||+|+++ .+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-----~~ 120 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-----RG 120 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----SC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----CC
Confidence 6889999999999999999999965 9999999976 467999999 568888 8999999996 35
Q ss_pred HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEee
Q 027039 163 PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
+.++++++.++|||||.++ .... ..+..++.+.+...+|..+.
T Consensus 121 ~~~~l~~~~~~LkpgG~l~-~~~~--~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 121 PTSVILRLPELAAPDAHFL-YVGP--RLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp CSGGGGGHHHHEEEEEEEE-EEES--SSCCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCCcEEE-EeCC--cCCHHHHHHHHHHCCCeEEE
Confidence 7788999999999999988 2222 33456678888877766544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=111.03 Aligned_cols=104 Identities=7% Similarity=-0.060 Sum_probs=81.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+.++.+|||+|||+|..+..+++.+ .+|+|+|+++. .+.++++|+.+......+||+|+++.
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 130 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG 130 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence 45788999999999999999999995 49999999976 25688899888433346899999875
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
.. ++. +++++.+.|||||++++.... ..+..++.+.++..+
T Consensus 131 ~~---~~~-~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g 171 (204)
T 3njr_A 131 GG---SQA-LYDRLWEWLAPGTRIVANAVT--LESETLLTQLHARHG 171 (204)
T ss_dssp CC---CHH-HHHHHHHHSCTTCEEEEEECS--HHHHHHHHHHHHHHC
T ss_pred cc---cHH-HHHHHHHhcCCCcEEEEEecC--cccHHHHHHHHHhCC
Confidence 22 566 999999999999998866554 455666777776554
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=115.67 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCeE--------------EEcCCCCCCCCC-----CceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPLV--------------SRADPHNLPFFD-----EAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~~--------------~~~d~~~~~~~~-----~~fD~V~~ 154 (229)
.++.+|||+|||+|..+..+++. +..+++|+|+++.+++. +++|+.+ ++++ ++||+|++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence 67889999999999999999988 34599999999986543 3333333 3444 89999999
Q ss_pred ccch------hhhC---------------------HHHHHHHHHhccccCcE-EEEEeecCCcccHHHHHHHHh--cCce
Q 027039 155 AHLA------EALF---------------------PSRFVGEMERTVKIGGV-CMVLMEECAGREIKQIVELFR--TSRF 204 (229)
Q Consensus 155 ~~~~------~~~~---------------------~~~~l~~~~~~LkpgG~-lil~~~~~~~~~~~~l~~l~~--~~~~ 204 (229)
+.-. ++.. ..++++++.++|||||. +++.+. .....++.+++. ..++
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~~~gf 184 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG---HNQADEVARLFAPWRERG 184 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT---TSCHHHHHHHTGGGGGGT
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC---CccHHHHHHHHHHhhcCC
Confidence 6211 1110 16788999999999999 554444 345677888888 8888
Q ss_pred eEeeeeeecCCeeEEEEEEecc
Q 027039 205 VDAANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~ 226 (229)
..+..........+.++.++..
T Consensus 185 ~~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 185 FRVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp EECCEEECTTSCEEEEEEEECC
T ss_pred ceEEEEEecCCCEEEEEEEEcC
Confidence 8888777766666666666543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=110.44 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEccc-chh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAH-LAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~-~~~ 159 (229)
+++.+|||+|||+|..+..+++. .+++|+|+++. .+.++++|+.+.+++ ++||+|++.. ..+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchh
Confidence 67899999999999999999988 59999999975 356889999888775 8999999874 555
Q ss_pred hh----CHHHHHHHHHhccccCcEEEEE
Q 027039 160 AL----FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 160 ~~----~~~~~l~~~~~~LkpgG~lil~ 183 (229)
++ ++.++++++.++|||||.+++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 55 3578899999999999999874
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-14 Score=119.23 Aligned_cols=112 Identities=11% Similarity=0.029 Sum_probs=84.9
Q ss_pred cccCchhHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------------CCeE
Q 027039 67 RLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------LPLV 134 (229)
Q Consensus 67 ~~~~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------~~~~ 134 (229)
.+|....|+........++. .++++.+|||+|||+|..+..+++.+. +|+|+|+++. .+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~ 105 (245)
T 3ggd_A 33 VLWDANVERAVVVDLPRFEL------LFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANISY 105 (245)
T ss_dssp CTTCCCGGGTHHHHHHHHTT------TSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCTTEEE
T ss_pred ceecchhHHHHHHHHHHHhh------ccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcccCceE
Confidence 34555555544433333322 247889999999999999999999876 9999999976 3568
Q ss_pred EEcCCCCCCCCC-----CceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEee
Q 027039 135 SRADPHNLPFFD-----EAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 135 ~~~d~~~~~~~~-----~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+++|+.+.++.. ..||+|+++.+.++.. +.++++++.++|||||++++...
T Consensus 106 ~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 106 RLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp EECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred EECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 899998865422 2499999998777773 57999999999999999776543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=108.54 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=79.2
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCC-CCCCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHN-LPFFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~-~~~~~~~fD~V~~ 154 (229)
...++.+|||+|||+|..+..++.. +..+++++|+++. .+ ++.+|..+ ++..+++||+|++
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~ 100 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFI 100 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEE
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEE
Confidence 4578889999999999999999988 5569999999975 13 66677644 3433389999999
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
+...++ .++++++.+.|||||.+++.... ..+...+.+.++..+
T Consensus 101 ~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~~ 144 (178)
T 3hm2_A 101 GGGLTA---PGVFAAAWKRLPVGGRLVANAVT--VESEQMLWALRKQFG 144 (178)
T ss_dssp CC-TTC---TTHHHHHHHTCCTTCEEEEEECS--HHHHHHHHHHHHHHC
T ss_pred CCcccH---HHHHHHHHHhcCCCCEEEEEeec--cccHHHHHHHHHHcC
Confidence 876664 78999999999999998865543 334455666665443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-15 Score=120.38 Aligned_cols=90 Identities=16% Similarity=0.048 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCC--CCCCCceeEEEc-cc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNL--PFFDEAFDVAFT-AH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~--~~~~~~fD~V~~-~~ 156 (229)
.+++.+|||||||+|..+..+++.+..+|+|+|+++.+ +.++++|+.++ ++++++||+|++ ..
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 36788999999999999999988765699999999863 45888999887 888999999999 32
Q ss_pred chh----hh-CHHHHHHHHHhccccCcEEEEE
Q 027039 157 LAE----AL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 157 ~~~----~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
... +. .+..+++++.++|||||+++++
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 211 11 3457899999999999998754
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=113.88 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=95.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc--
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH-- 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~-- 156 (229)
.++.+|||+|||+|..+..++.. +..+++|+|+++. .+.++++|+.+. +++++||+|+++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPY 186 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCC
Confidence 56789999999999999999965 6669999999976 256888888763 4467999999971
Q ss_pred -----------chhh-------------hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 157 -----------LAEA-------------LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 157 -----------~~~~-------------~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+.++ .+..++++++.+.|||||.+++.... .+..++.++++..+|..+.....
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l~~~Gf~~v~~~~d 263 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---QQGEAVRQAFILAGYHDVETCRD 263 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---SCHHHHHHHHHHTTCTTCCEEEC
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---hHHHHHHHHHHHCCCcEEEEEec
Confidence 1111 13477899999999999998876543 45577888888888877766666
Q ss_pred cCCeeEEEEEEe
Q 027039 213 NGSNMTRILMRR 224 (229)
Q Consensus 213 ~~~~~~~~~~~~ 224 (229)
.....+.++.++
T Consensus 264 ~~g~~r~~~~~~ 275 (276)
T 2b3t_A 264 YGDNERVTLGRY 275 (276)
T ss_dssp TTSSEEEEEEEC
T ss_pred CCCCCcEEEEEE
Confidence 566667776654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-14 Score=116.69 Aligned_cols=98 Identities=14% Similarity=0.037 Sum_probs=77.1
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe---------EEEcCCCCCCC-----CCCceeEEE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPF-----FDEAFDVAF 153 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~---------~~~~d~~~~~~-----~~~~fD~V~ 153 (229)
++....+.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++ +++.+..+.+. .+++||+|+
T Consensus 37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv 115 (261)
T 3iv6_A 37 DIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVL 115 (261)
T ss_dssp HHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEE
T ss_pred HHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEE
Confidence 33444568899999999999999999999976 9999999987543 34555555433 257999999
Q ss_pred cccchhhh---CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 154 TAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 154 ~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
++.+.+|+ +...+++++.++| |||++++.+...
T Consensus 116 ~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 116 NDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred EhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 99877766 3467899999999 999999877653
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=114.08 Aligned_cols=133 Identities=13% Similarity=0.073 Sum_probs=101.1
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCcee
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD 150 (229)
+.....++++.+|||||||+|..+..+++. +..+++++|+ +. .+.++.+|+. .+++. .||
T Consensus 194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D 270 (369)
T 3gwz_A 194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GAD 270 (369)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCS
T ss_pred HHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-Cce
Confidence 333334567899999999999999999987 5559999998 44 3678999998 45555 899
Q ss_pred EEEcccchhhhC-HH--HHHHHHHhccccCcEEEEEeecCC---------------------cccHHHHHHHHhcCceeE
Q 027039 151 VAFTAHLAEALF-PS--RFVGEMERTVKIGGVCMVLMEECA---------------------GREIKQIVELFRTSRFVD 206 (229)
Q Consensus 151 ~V~~~~~~~~~~-~~--~~l~~~~~~LkpgG~lil~~~~~~---------------------~~~~~~l~~l~~~~~~~~ 206 (229)
+|++.++.++.. +. ++++++.+.|||||++++.-.... ..+..++.++++..+|..
T Consensus 271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 999999888774 43 799999999999999987543321 245678889999999988
Q ss_pred eeeeeecCCeeEEEEEE
Q 027039 207 AANVTVNGSNMTRILMR 223 (229)
Q Consensus 207 ~~~~~~~~~~~~~~~~~ 223 (229)
++.....++...++..+
T Consensus 351 ~~~~~~~~~~~svie~~ 367 (369)
T 3gwz_A 351 ERSLPCGAGPVRIVEIR 367 (369)
T ss_dssp EEEEECSSSSEEEEEEE
T ss_pred EEEEECCCCCcEEEEEE
Confidence 88766344444555444
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-14 Score=124.55 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=80.8
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCC------------------------CCCeEEEc
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMD------------------------SLPLVSRA 137 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~------------------------~~~~~~~~ 137 (229)
..+..++....++++.+|||||||+|..+..++.. |..+++|+|+++ ..+.++++
T Consensus 160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 33344444446789999999999999999999866 776799999995 24679999
Q ss_pred CCCCCCCCC--CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 138 DPHNLPFFD--EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 138 d~~~~~~~~--~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+.++++.+ ..||+|+++.+....+..+.+.++.++|||||++++.
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred cccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEe
Confidence 999988754 4799999986654446788899999999999998743
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=111.30 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCC--CCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLP--FFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~ 156 (229)
.++.+|||||||+|.++..++.. +..+++|+|+++. .+.++++|+.+++ +++++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 46789999999999999999987 5569999999965 3558999999877 7788999999984
Q ss_pred chhhh---------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEee
Q 027039 157 LAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 157 ~~~~~---------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
...+. ...++++++.++|||||.+++.++. ......+.+.+...++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~g~~~~~ 178 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--RGLFEYSLVSFSQYGMKLNG 178 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHHTCEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--HHHHHHHHHHHHHCCCeeee
Confidence 32111 1267999999999999998876653 22345666777766654433
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=112.09 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=85.9
Q ss_pred cCC-CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCC--CCCCceeEEE
Q 027039 93 LLF-NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLP--FFDEAFDVAF 153 (229)
Q Consensus 93 ~~~-~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~--~~~~~fD~V~ 153 (229)
..+ ++.+|||+|||+|.++..+++.+..+|+|+|+++. .+.++++|+.+.+ +++++||+|+
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 345 78999999999999999999995559999999976 2568899998865 5578999999
Q ss_pred cccch--h---hh----------------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 154 TAHLA--E---AL----------------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 154 ~~~~~--~---~~----------------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
+|--. . .. ...++++++.++|||||+++++... ....++.+.++..++...
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP---ERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT---TTHHHHHHHHHHTTEEEE
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH---HHHHHHHHHHHHCCCceE
Confidence 97211 1 11 2357899999999999999986653 456677777776665443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=119.27 Aligned_cols=89 Identities=16% Similarity=0.043 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------------eEEEcCCCCC--CCCCCceeEEEcc---
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNL--PFFDEAFDVAFTA--- 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------------~~~~~d~~~~--~~~~~~fD~V~~~--- 155 (229)
.+|.+|||||||+|..+..+++.+..+++++|+++.++ .++.+|+.+. ++++++||.|+..
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence 68899999999999999999988445999999998733 3677777653 5778999999853
Q ss_pred --cchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 156 --HLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 --~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...++. ++..+++++.|+|||||++++.
T Consensus 139 ~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 333344 7889999999999999998765
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8e-13 Score=113.26 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=97.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
+++..+|||||||+|..+..+++. +..+++++|+ +. .++++.+|+. .+++. +||+|++.+
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 243 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA 243 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh
Confidence 356789999999999999999887 5569999998 54 3668899987 34544 899999999
Q ss_pred chhhh-CH--HHHHHHHHhccccCcEEEEEeecC-------------------CcccHHHHHHHHhcCceeEeeeeeecC
Q 027039 157 LAEAL-FP--SRFVGEMERTVKIGGVCMVLMEEC-------------------AGREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 157 ~~~~~-~~--~~~l~~~~~~LkpgG~lil~~~~~-------------------~~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
+.++. ++ .+++++++++|||||++++.-... ..++..++.+++.+.+|..++.....+
T Consensus 244 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 323 (332)
T 3i53_A 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY 323 (332)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC
Confidence 88888 43 789999999999999998754321 134577888999999998887765554
Q ss_pred CeeEEEEEE
Q 027039 215 SNMTRILMR 223 (229)
Q Consensus 215 ~~~~~~~~~ 223 (229)
..++..+
T Consensus 324 --~~vie~r 330 (332)
T 3i53_A 324 --VSIVEMT 330 (332)
T ss_dssp --SEEEEEE
T ss_pred --cEEEEEe
Confidence 4555544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=109.10 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=85.5
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCCCCCCCCceeEEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~~~~~~~~fD~V~ 153 (229)
.+++.+|||||||+|..+..+++. +..+|+|+|+++. .+.++++|+.++|+++++ |.|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 368899999999999999999998 4569999999986 235889999999987766 7766
Q ss_pred cc---cch--hhh-CHHHHHHHHHhccccCcEEEEEeecCCc----------------ccHHHHHHHHhcCceeEee
Q 027039 154 TA---HLA--EAL-FPSRFVGEMERTVKIGGVCMVLMEECAG----------------REIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 154 ~~---~~~--~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~----------------~~~~~l~~l~~~~~~~~~~ 208 (229)
.. ... ++. ++.++++++.++|||||.+++....... +....+.+++...+|.-..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 43 222 244 6789999999999999999986543210 1123366678877775443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=110.60 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=78.4
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCce
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAF 149 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~f 149 (229)
++..++......++.+|||+|||+|..+..+++.|. +++|+|+++. .+.++++|+.+++++ ++|
T Consensus 29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 106 (252)
T 1wzn_A 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEF 106 (252)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCE
T ss_pred HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCc
Confidence 333333333346778999999999999999999876 9999999976 356899999988764 689
Q ss_pred eEEEcc-cchhhh---CHHHHHHHHHhccccCcEEEEEeec
Q 027039 150 DVAFTA-HLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 150 D~V~~~-~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|+|++. ....+. ++.++++++.++|||||.+++.+..
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 999975 223332 4578999999999999999876543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=107.21 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=83.6
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC-------------CCeEEEcCCCCCC---CCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS-------------LPLVSRADPHNLP---FFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~V~ 153 (229)
..++++.+|||+|||+|..+..+++. +.++|+|+|+++. .+.++.+|+.... ...++||+|+
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~ 151 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLY 151 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEE
Confidence 34789999999999999999999987 4679999999984 3458889987642 1246899999
Q ss_pred cccchhhhCHHHH-HHHHHhccccCcEEEEEeecCC-------cccHHHHHHHHhcCceeEeeeeee
Q 027039 154 TAHLAEALFPSRF-VGEMERTVKIGGVCMVLMEECA-------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 154 ~~~~~~~~~~~~~-l~~~~~~LkpgG~lil~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
++... .+..+. ...+.+.|||||++++.+.... ...+....+.++..+|.-++.++.
T Consensus 152 ~d~a~--~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l 216 (232)
T 3id6_C 152 VDIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINL 216 (232)
T ss_dssp ECCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEEC
T ss_pred ecCCC--hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 97322 234444 4566669999999998753311 223344455556666766666655
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-12 Score=108.81 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=96.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
+++ .+|||||||+|..+..+++. +..+++++|+ +.+ +.++.+|+.+ +++ ++||+|++.+
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~ 241 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR 241 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch
Confidence 455 89999999999999999987 5569999999 663 4588899887 554 6899999998
Q ss_pred chhhh-CH--HHHHHHHHhccccCcEEEEEeec----------------------CCcccHHHHHHHHhcCceeEeeeee
Q 027039 157 LAEAL-FP--SRFVGEMERTVKIGGVCMVLMEE----------------------CAGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 157 ~~~~~-~~--~~~l~~~~~~LkpgG~lil~~~~----------------------~~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
+.++. ++ .++++++.+.|||||++++.-.. ....+..++.++++..+|..++...
T Consensus 242 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 242 IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 88876 34 38999999999999999876321 1123567788899999998877666
Q ss_pred ecCCeeEEEEEE
Q 027039 212 VNGSNMTRILMR 223 (229)
Q Consensus 212 ~~~~~~~~~~~~ 223 (229)
..+. ..++..+
T Consensus 322 ~~~~-~~~i~~~ 332 (334)
T 2ip2_A 322 LPME-TRMIVAA 332 (334)
T ss_dssp ETTT-EEEEEEE
T ss_pred CCCC-CEEEEEE
Confidence 5443 3455544
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=107.77 Aligned_cols=92 Identities=17% Similarity=0.069 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCC--CCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLP--FFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~~ 157 (229)
.++.+|||+|||+|..+..++..+..+|+|+|+++. .++++++|+.+.+ +++++||+|+++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 478899999999999999888887779999999976 2458889988753 44789999999855
Q ss_pred hhh--hCHHHHHHHHHh--ccccCcEEEEEeec
Q 027039 158 AEA--LFPSRFVGEMER--TVKIGGVCMVLMEE 186 (229)
Q Consensus 158 ~~~--~~~~~~l~~~~~--~LkpgG~lil~~~~ 186 (229)
.++ .+..++++++.+ +|||||.+++....
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 444 257889999999 99999999887665
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-13 Score=110.19 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=92.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
+.++.+|||+|||+|.++..+++.|. +|+|+|+++.+ +.+.++|..+. +++++||+|+++...+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHH
Confidence 47889999999999999999999877 99999999873 45777776652 4467899999976544
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
+ ...++.++.+.|||||.+++.... ......+.+.++..+|..+......++.
T Consensus 196 ~--~~~~l~~~~~~LkpgG~lils~~~--~~~~~~v~~~l~~~Gf~~~~~~~~~~W~ 248 (254)
T 2nxc_A 196 L--HAALAPRYREALVPGGRALLTGIL--KDRAPLVREAMAGAGFRPLEEAAEGEWV 248 (254)
T ss_dssp H--HHHHHHHHHHHEEEEEEEEEEEEE--GGGHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred H--HHHHHHHHHHHcCCCCEEEEEeec--cCCHHHHHHHHHHCCCEEEEEeccCCeE
Confidence 2 467899999999999998875433 3457788899998888877766666653
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=112.80 Aligned_cols=126 Identities=14% Similarity=0.043 Sum_probs=96.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++++.+|||||||+|..+..+++. +..+++++|+++. .+.++.+|+. .+++ +||+|++.++
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~v 256 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRI 256 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESC
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehh
Confidence 34577899999999999999999887 5568999997421 3668899986 3444 8999999998
Q ss_pred hhhh-CH--HHHHHHHHhccccCcEEEEEeecC----------------------CcccHHHHHHHHhcCceeEeeeeee
Q 027039 158 AEAL-FP--SRFVGEMERTVKIGGVCMVLMEEC----------------------AGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 158 ~~~~-~~--~~~l~~~~~~LkpgG~lil~~~~~----------------------~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.++. ++ .+++++++++|||||++++.-... ...+..++.+++++.+|..++...
T Consensus 257 lh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~- 335 (348)
T 3lst_A 257 LHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG- 335 (348)
T ss_dssp GGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE-
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE-
Confidence 8888 44 589999999999999998754211 123577888999999998887766
Q ss_pred cCCeeEEEE
Q 027039 213 NGSNMTRIL 221 (229)
Q Consensus 213 ~~~~~~~~~ 221 (229)
.++...++.
T Consensus 336 ~~~~~~vie 344 (348)
T 3lst_A 336 TSSVMSIAV 344 (348)
T ss_dssp CSSSCEEEE
T ss_pred CCCCcEEEE
Confidence 343334443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=111.60 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCC--CCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLP--FFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~ 156 (229)
.++.+|||||||+|.++..+++. +..+++|+|+++. .+.++++|+.+++ +++++||.|+++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 46789999999999999999987 5569999999975 3568889998865 6788999998763
Q ss_pred chh-----h----hCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 157 LAE-----A----LFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 157 ~~~-----~----~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
... | +....+++++.++|||||.+++.++. ........+.+...++
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~~~~~~g~ 171 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--RGLFEYSLKSFSEYGL 171 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--HHHHHHHHHHHHHHTC
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCC
Confidence 211 1 11368999999999999999877754 2223445555555444
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=110.87 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++.+|||||||+|..+..+++. +..+++++|++ . .+.++.+|+.+.+++++ ||+|++.++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 67889999999999999999987 55599999998 4 26689999988777554 999999988
Q ss_pred hhhhC-H--HHHHHHHHhccccCcEEEEEeecC------------------------CcccHHHHHHHHhcCceeEeeee
Q 027039 158 AEALF-P--SRFVGEMERTVKIGGVCMVLMEEC------------------------AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 158 ~~~~~-~--~~~l~~~~~~LkpgG~lil~~~~~------------------------~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
.++.. + .++++++.++|||||++++.-... ..++..++.+++++.+|..++..
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 88772 3 689999999999999988664321 12346788889999998877766
Q ss_pred eecCC
Q 027039 211 TVNGS 215 (229)
Q Consensus 211 ~~~~~ 215 (229)
...+.
T Consensus 322 ~~~~~ 326 (335)
T 2r3s_A 322 SLPTT 326 (335)
T ss_dssp CCTTS
T ss_pred ECCCC
Confidence 55554
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=118.01 Aligned_cols=109 Identities=20% Similarity=0.231 Sum_probs=87.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
.++.+|||+|||+|.++..+++.+. +|+++|+++. .+.++.+|+.+.+.++++||+|+++...++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4778999999999999999999976 9999999976 356899999998776789999999855444
Q ss_pred -----h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 161 -----L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 161 -----~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
. ...++++++.+.|||||.++++......+ ...+.+.|+.++.+
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~-~~~l~~~f~~v~~l 360 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKY-EPLLEEKFGAFQTL 360 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCH-HHHHHHHHSCCEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCCh-HHHHHHhhccEEEE
Confidence 2 46789999999999999999877664332 24466777765544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-13 Score=107.62 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=86.9
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC-------------CCeEEEcCCCC---CCCCCCceeEE
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS-------------LPLVSRADPHN---LPFFDEAFDVA 152 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~-------------~~~~~~~d~~~---~~~~~~~fD~V 152 (229)
...++++.+|||+|||+|.++..+++. +.++|+|+|+++. .+.++.+|+.+ +++.+++||+|
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V 151 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVI 151 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEE
Confidence 334678999999999999999999987 3469999999953 45688999987 45567899999
Q ss_pred EcccchhhhC-HHHHHHHHHhccccCcEEEEEeecC---Cccc----HHHHHHHHhcCceeEeeeeee
Q 027039 153 FTAHLAEALF-PSRFVGEMERTVKIGGVCMVLMEEC---AGRE----IKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 153 ~~~~~~~~~~-~~~~l~~~~~~LkpgG~lil~~~~~---~~~~----~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+++.. ..+ ...++.++.+.|||||.+++.+... .... +.+-.+.+...+|..++....
T Consensus 152 ~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 217 (233)
T 2ipx_A 152 FADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTL 217 (233)
T ss_dssp EECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEEC
T ss_pred EEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEec
Confidence 99643 122 2556889999999999999866541 1111 111146677778876664443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=115.89 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------------------eEEEcCC------CCC--CCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------------LVSRADP------HNL--PFF 145 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------------------~~~~~d~------~~~--~~~ 145 (229)
.++.+|||||||+|..+..++..+..+|+|+|+|+.++ ++.+.|+ .++ +++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 35789999999999877777666556999999998732 3556666 222 356
Q ss_pred CCceeEEEcccchhhh----CHHHHHHHHHhccccCcEEEEEeec
Q 027039 146 DEAFDVAFTAHLAEAL----FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~----~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+++||+|+|....++. +..+++++++++|||||.+++.+..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7899999998665543 4578999999999999999877764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.9e-13 Score=114.29 Aligned_cols=129 Identities=10% Similarity=0.097 Sum_probs=101.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCC--CCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNL--PFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~--~~~~~~fD~V~~~ 155 (229)
....+|||||||+|..+..+++. +..+++++|+ +. .+.++.+|+.+. |++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 46789999999999999999886 5569999998 43 356899999885 565 789999999
Q ss_pred cchhhhC-H--HHHHHHHHhccccCcEEEEEeecC---------------------------CcccHHHHHHHHhcCcee
Q 027039 156 HLAEALF-P--SRFVGEMERTVKIGGVCMVLMEEC---------------------------AGREIKQIVELFRTSRFV 205 (229)
Q Consensus 156 ~~~~~~~-~--~~~l~~~~~~LkpgG~lil~~~~~---------------------------~~~~~~~l~~l~~~~~~~ 205 (229)
++.++.. + .++++++.++|||||++++.-... ..++..++.+++.+.+|.
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 8887763 3 578999999999999988653211 123577888999999999
Q ss_pred EeeeeeecCCeeEEEEEEec
Q 027039 206 DAANVTVNGSNMTRILMRRT 225 (229)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~ 225 (229)
.++.....|....++..++.
T Consensus 336 ~v~~~~~~g~~~svi~~~~~ 355 (363)
T 3dp7_A 336 VEEIQDNIGLGHSILQCRLK 355 (363)
T ss_dssp ESCCCCCBTTTBEEEEEEEC
T ss_pred EEEEEeCCCCCceEEEEeec
Confidence 98888777776566665554
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=117.95 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=75.5
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
+.++.+|||||||+|.++..+++.|..+|+|+|+++. .+.++++|+.++++++++||+|+++.+.
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 3678999999999999999999998789999999951 2679999999999888999999996432
Q ss_pred ---hh-hCHHHHHHHHHhccccCcEEE
Q 027039 159 ---EA-LFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 159 ---~~-~~~~~~l~~~~~~LkpgG~li 181 (229)
.+ ..+..++.++.++|||||.++
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 22 267889999999999999975
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-13 Score=115.06 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=75.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCC---------------CCCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD---------------SLPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~---------------~~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
...++.+|||||||+|.++..+++.|..+|+|+|+++ ..+.++++|+.++++++++||+|+++.+
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 3478899999999999999999998777999999995 2356899999999888899999998753
Q ss_pred ---hhhh-CHHHHHHHHHhccccCcEEE
Q 027039 158 ---AEAL-FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 158 ---~~~~-~~~~~l~~~~~~LkpgG~li 181 (229)
..+. .+..++.++.++|||||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 3333 46789999999999999987
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-12 Score=110.64 Aligned_cols=127 Identities=12% Similarity=0.032 Sum_probs=98.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------CCeEEEcCCCCCCCCCCceeEEEcccchhhhC-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF- 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~- 162 (229)
+.+..+|||||||+|..+..+++. +..+++++|+ +. .++++.+|+.+ +++++ |+|++.++.|+..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD 276 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence 567889999999999999999887 6668999998 33 46699999987 66654 9999998888773
Q ss_pred H--HHHHHHHHhccccCcEEEEEeec---------------------------CCcccHHHHHHHHhcCceeEeeeeeec
Q 027039 163 P--SRFVGEMERTVKIGGVCMVLMEE---------------------------CAGREIKQIVELFRTSRFVDAANVTVN 213 (229)
Q Consensus 163 ~--~~~l~~~~~~LkpgG~lil~~~~---------------------------~~~~~~~~l~~l~~~~~~~~~~~~~~~ 213 (229)
+ .+++++++++|||||++++.-.. ...++..++.++++..+|..++.....
T Consensus 277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~ 356 (368)
T 3reo_A 277 EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCA 356 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeC
Confidence 3 47899999999999998875321 112346678889999999998887777
Q ss_pred CCeeEEEEEEec
Q 027039 214 GSNMTRILMRRT 225 (229)
Q Consensus 214 ~~~~~~~~~~~~ 225 (229)
+.. ..+.++++
T Consensus 357 ~~~-~vie~~k~ 367 (368)
T 3reo_A 357 FNT-YVMEFLKT 367 (368)
T ss_dssp TTE-EEEEEECC
T ss_pred CCc-EEEEEEeC
Confidence 664 45555543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-13 Score=113.60 Aligned_cols=90 Identities=17% Similarity=0.094 Sum_probs=72.6
Q ss_pred cccCCCCCeEEEEcCCCChhh-HHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEc
Q 027039 91 KSLLFNHSKVLCVSAGAGHEV-MAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~-~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
...++++.+|||||||+|..+ ..+++...++|+|+|+++. .++++++|+.+++ +++||+|++
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence 346789999999999998765 4456553349999999986 3558899998876 789999998
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
... ..++.++++++.++|||||++++..
T Consensus 195 ~a~--~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 195 AAL--AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp CTT--CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCC--ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 544 2378899999999999999988654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=111.81 Aligned_cols=127 Identities=14% Similarity=0.081 Sum_probs=97.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||||||+|..+..+++. +..+++++|+ +.+ +.++.+|+.+.++++. |+|++.
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~ 263 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFC 263 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEE
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEe
Confidence 4577899999999999999999987 5559999999 652 6688999998877554 999999
Q ss_pred cchhhh-C--HHHHHHHHHhccccCcEEEEEeec---------------------CCc----ccHHHHHHHHhcCceeEe
Q 027039 156 HLAEAL-F--PSRFVGEMERTVKIGGVCMVLMEE---------------------CAG----REIKQIVELFRTSRFVDA 207 (229)
Q Consensus 156 ~~~~~~-~--~~~~l~~~~~~LkpgG~lil~~~~---------------------~~~----~~~~~l~~l~~~~~~~~~ 207 (229)
.+.++. + ..++++++.++|||||++++.-.. ... .+..++.+++++.+|..+
T Consensus 264 ~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v 343 (359)
T 1x19_A 264 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDV 343 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEE
T ss_pred chhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceE
Confidence 888877 3 588999999999999999765411 111 567788888988888776
Q ss_pred eeeeecCCeeEEEEEEe
Q 027039 208 ANVTVNGSNMTRILMRR 224 (229)
Q Consensus 208 ~~~~~~~~~~~~~~~~~ 224 (229)
+..... ...++..+|
T Consensus 344 ~~~~~~--~~~vi~a~k 358 (359)
T 1x19_A 344 TMVRKY--DHLLVQAVK 358 (359)
T ss_dssp EEEEET--TEEEEEEEC
T ss_pred EEEecC--CceEEEEeC
Confidence 665544 334555443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=104.30 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=83.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCC-CceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFD-EAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~-~~fD~V~~~ 155 (229)
...++.+|||+|||+|..+..+++.+ .+++++|+++. .+.+..+|+.+ ++++ ++||+|+++
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~ 107 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVG 107 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEES
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEEC
Confidence 45788999999999999999999987 69999999874 34577777766 2333 589999997
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
...+ +..++++++.++|||||.+++.... .....++.+.+++.++
T Consensus 108 ~~~~--~~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 108 GSGG--ELQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGF 152 (192)
T ss_dssp CCTT--CHHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTC
T ss_pred CchH--HHHHHHHHHHHhcCCCcEEEEEecC--cchHHHHHHHHHHCCC
Confidence 6543 4688999999999999998876654 4455667777776665
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=106.89 Aligned_cols=111 Identities=13% Similarity=0.228 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------------CCeEEEcCCCC-CC--CCCCce
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------------LPLVSRADPHN-LP--FFDEAF 149 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------------~~~~~~~d~~~-~~--~~~~~f 149 (229)
.++.+|||||||+|.++..+++. +...++|+|+++. .+.++++|+.+ ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 56789999999999999999987 5669999999853 35688999987 66 778999
Q ss_pred eEEEcccchhhh---------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc-eeEe
Q 027039 150 DVAFTAHLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR-FVDA 207 (229)
Q Consensus 150 D~V~~~~~~~~~---------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~-~~~~ 207 (229)
|.|+++....+. ....+++++.++|||||.+++.++. ..-.....+.+...+ |..+
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~--~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV--LELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHTSTTEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCcccc
Confidence 999976322111 0147999999999999999877764 222334455555443 4443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-12 Score=109.38 Aligned_cols=133 Identities=15% Similarity=0.102 Sum_probs=99.4
Q ss_pred HHhcccCCC-CCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCC-CCCCc
Q 027039 88 LQGKSLLFN-HSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLP-FFDEA 148 (229)
Q Consensus 88 l~~~~~~~~-~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~-~~~~~ 148 (229)
++....+.+ +.+|||||||+|..+..+++. +..+++++|+ +. .+.++.+|+.+.+ +.++.
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 248 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGA 248 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCC
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCC
Confidence 333333455 889999999999999999987 5569999999 43 2668999998865 23567
Q ss_pred eeEEEcccchhhhC-H--HHHHHHHHhccccCcEEEEEeec------------------------CCcccHHHHHHHHhc
Q 027039 149 FDVAFTAHLAEALF-P--SRFVGEMERTVKIGGVCMVLMEE------------------------CAGREIKQIVELFRT 201 (229)
Q Consensus 149 fD~V~~~~~~~~~~-~--~~~l~~~~~~LkpgG~lil~~~~------------------------~~~~~~~~l~~l~~~ 201 (229)
||+|++.++.++.. + .++++++.+.|||||++++.-.. ...++..++.+++..
T Consensus 249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 328 (352)
T 3mcz_A 249 ADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRD 328 (352)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHH
T ss_pred ccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHH
Confidence 99999999888773 3 78999999999999999876421 123456778899999
Q ss_pred CceeEeeeeeecCCeeEEEEEEe
Q 027039 202 SRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
.+|..++.. .|. ...++.+|
T Consensus 329 aGf~~~~~~--~g~-~~l~~a~k 348 (352)
T 3mcz_A 329 AGLAVGERS--IGR-YTLLIGQR 348 (352)
T ss_dssp TTCEEEEEE--ETT-EEEEEEEC
T ss_pred CCCceeeec--cCc-eEEEEEec
Confidence 999888743 333 34444444
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-12 Score=111.19 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=91.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-C
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~ 162 (229)
++++.+|||||||+|..+..+++. +..+++++|+ +. .+.++.+|+.+ ++++ ||+|+++++.++. +
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD 282 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCH
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCH
Confidence 567889999999999999999987 5558999997 43 36688999987 6654 9999999988887 5
Q ss_pred HH--HHHHHHHhccccCcEEEEEe---ecC-----------------------CcccHHHHHHHHhcCceeEeeeee-ec
Q 027039 163 PS--RFVGEMERTVKIGGVCMVLM---EEC-----------------------AGREIKQIVELFRTSRFVDAANVT-VN 213 (229)
Q Consensus 163 ~~--~~l~~~~~~LkpgG~lil~~---~~~-----------------------~~~~~~~l~~l~~~~~~~~~~~~~-~~ 213 (229)
+. ++++++.++|||||++++.- +.. ..++..++.+++++.+|..++... ..
T Consensus 283 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 362 (372)
T 1fp1_D 283 EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAF 362 (372)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEET
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCC
Confidence 55 89999999999999998762 211 123456777888888888777665 34
Q ss_pred C
Q 027039 214 G 214 (229)
Q Consensus 214 ~ 214 (229)
|
T Consensus 363 ~ 363 (372)
T 1fp1_D 363 N 363 (372)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=106.84 Aligned_cols=106 Identities=20% Similarity=0.163 Sum_probs=82.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------C---------CeEEEcCCCCC-------CCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------L---------PLVSRADPHNL-------PFFD 146 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------~---------~~~~~~d~~~~-------~~~~ 146 (229)
..++.+|||+|||+|..+..++.. +..+|+|+|+++. . +.++++|+.+. ++++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 457889999999999999999988 4569999999865 1 56889999886 3567
Q ss_pred CceeEEEcc--cch--------------hhh---CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcC
Q 027039 147 EAFDVAFTA--HLA--------------EAL---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (229)
Q Consensus 147 ~~fD~V~~~--~~~--------------~~~---~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~ 202 (229)
++||+|+++ +.. .+. ....+++++.++|||||.++++.+. ....++.+.++..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l~~~ 185 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP---QSVAEIIAACGSR 185 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG---GGHHHHHHHHTTT
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH---HHHHHHHHHHHhc
Confidence 899999998 111 111 3578899999999999999987764 3556677777653
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.7e-13 Score=110.38 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=84.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
++++.+|||+|||+|.++..++..+..+|+|+|+++.+ +.++++|+.+.+. +++||+|+++..
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 37799999999999999999999865479999999762 4588999999876 789999999644
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEeecC----CcccHHHHHHHHhcCce
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLMEEC----AGREIKQIVELFRTSRF 204 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~~~~----~~~~~~~l~~l~~~~~~ 204 (229)
.. ..+++.++.++|||||.+++..... .....+.+.+.++..++
T Consensus 202 ~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~ 249 (278)
T 2frn_A 202 VR---THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 249 (278)
T ss_dssp SS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred hh---HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCC
Confidence 32 4678899999999999988765542 23456677777775544
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=109.92 Aligned_cols=129 Identities=19% Similarity=0.134 Sum_probs=96.5
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
++++.+|||||||+|..+..+++. +..+++++|+ +. .+.++.+|+.+ +++. .||+|++++
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 256 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF 256 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence 467889999999999999999987 4559999998 54 36688999876 3433 499999998
Q ss_pred chhhh-CH--HHHHHHHHhccccCcEEEEEee--cC----------------------CcccHHHHHHHHhcCceeEeee
Q 027039 157 LAEAL-FP--SRFVGEMERTVKIGGVCMVLME--EC----------------------AGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 157 ~~~~~-~~--~~~l~~~~~~LkpgG~lil~~~--~~----------------------~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+.++. ++ .++++++.++|||||++++... .. ...+..++.+++...+|..++.
T Consensus 257 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 336 (374)
T 1qzz_A 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 336 (374)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 88877 44 3899999999999999886543 21 1136778888999999987766
Q ss_pred eeecCCee----EEEEEEec
Q 027039 210 VTVNGSNM----TRILMRRT 225 (229)
Q Consensus 210 ~~~~~~~~----~~~~~~~~ 225 (229)
....+... ..+..++.
T Consensus 337 ~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 337 RTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEECCSSCSSCEEEEEEEEC
T ss_pred EECCCCcccCCcEEEEEEEC
Confidence 55544320 45555553
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=107.97 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=91.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 153 (229)
..+.++.+|||+|||+|..+..+++. + ..+++++|+++. .+.+.++|+.+.++++++||+|+
T Consensus 92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~ 171 (258)
T 2pwy_A 92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVA 171 (258)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEE
Confidence 35678999999999999999999987 4 569999999863 35688899988878788999999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeee
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
++ . .++.++++++.++|||||.+++.... .....++.+.++..+|..++...
T Consensus 172 ~~-~---~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 172 LD-L---MEPWKVLEKAALALKPDRFLVAYLPN--ITQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp EE-S---SCGGGGHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHTTTTEEEEEEEE
T ss_pred EC-C---cCHHHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCceEEEEE
Confidence 83 1 25678999999999999998877765 34566777777777777655443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-13 Score=113.00 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=75.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------------CeEEEcCCCCCC----CC--C
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------------PLVSRADPHNLP----FF--D 146 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------------~~~~~~d~~~~~----~~--~ 146 (229)
.++.+|||+|||+|..+..+++.+..+++|+|+++.+ +.++++|+.+.+ ++ +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 4788999999999999999998766699999999762 468899999876 53 4
Q ss_pred CceeEEEcccchhhh-----CHHHHHHHHHhccccCcEEEEEeec
Q 027039 147 EAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~-----~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++||+|+++...++. ++..+++++.++|||||.+++.+..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 599999998766554 3478999999999999999987765
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=109.49 Aligned_cols=90 Identities=19% Similarity=0.074 Sum_probs=70.8
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEE--EcCCCCCCCCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVS--RADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~--~~d~~~~~~~~~~fD~V~ 153 (229)
..++++.+|||+|||+|.++..+++. ++|+|+|+++. .+.++ ++|+.+++ +++||+|+
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 45688999999999999999999998 59999999874 13567 88888876 68999999
Q ss_pred cccchhhh-C----HH---HHHHHHHhccccCc--EEEEEeec
Q 027039 154 TAHLAEAL-F----PS---RFVGEMERTVKIGG--VCMVLMEE 186 (229)
Q Consensus 154 ~~~~~~~~-~----~~---~~l~~~~~~LkpgG--~lil~~~~ 186 (229)
|+.. ++. + .. .++.++.++||||| .+++-+-.
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9743 211 1 11 37899999999999 88765543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-12 Score=103.37 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=72.2
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC-------------CCeEEEcCCCCCC---CCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS-------------LPLVSRADPHNLP---FFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~-------------~~~~~~~d~~~~~---~~~~~fD~V~~ 154 (229)
.++++.+|||+|||+|.++..+++. | .++|+|+|+++. .+.++++|+.+.. ..+++||+|++
T Consensus 70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence 3578899999999999999999987 4 469999999983 4568899998732 12468999998
Q ss_pred ccchhhhC-HHHHHHHHHhccccCcEEEEEeec
Q 027039 155 AHLAEALF-PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~~~~~~~~-~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.. ..+ ...++.++.+.|||||.+++.+..
T Consensus 150 ~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 180 (227)
T 1g8a_A 150 DVA--QPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp CCC--STTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCC--CHhHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 643 222 345599999999999999987543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-13 Score=109.18 Aligned_cols=87 Identities=23% Similarity=0.262 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcccchhhhCH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFP 163 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~ 163 (229)
.++.+|||||||+|..+..+++. +..+++|+|+++. .+.+..+|+.++++++++||+|+++...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 57889999999999999999987 3459999999976 3568999999999989999999986542
Q ss_pred HHHHHHHHhccccCcEEEEEeecC
Q 027039 164 SRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
.+++++.++|||||.+++.+...
T Consensus 159 -~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 -CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -CCHHHHHHHEEEEEEEEEEEECT
T ss_pred -hhHHHHHHhcCCCcEEEEEEcCH
Confidence 35899999999999999887764
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-12 Score=109.39 Aligned_cols=126 Identities=11% Similarity=0.060 Sum_probs=96.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCC--------CCCeEEEcCCCCCCCCCCceeEEEcccchhhhC--
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMD--------SLPLVSRADPHNLPFFDEAFDVAFTAHLAEALF-- 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~-- 162 (229)
+++..+|||||||+|..+..+++. +..+++++|+.. ..+.++.+|+.+ |++++ |+|++.++.|+..
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~ 275 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQ 275 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHH
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHH
Confidence 567899999999999999999887 666899999831 146799999988 77654 9999998888763
Q ss_pred -HHHHHHHHHhccccCcEEEEEeec---------------------------CCcccHHHHHHHHhcCceeEeeeeeecC
Q 027039 163 -PSRFVGEMERTVKIGGVCMVLMEE---------------------------CAGREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 163 -~~~~l~~~~~~LkpgG~lil~~~~---------------------------~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
..+++++++++|||||++++.-.. ...++..++.++++..+|..++.....+
T Consensus 276 ~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~ 355 (364)
T 3p9c_A 276 HCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYA 355 (364)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCC
Confidence 357899999999999999875211 1123456788889999998888777666
Q ss_pred CeeEEEEEE
Q 027039 215 SNMTRILMR 223 (229)
Q Consensus 215 ~~~~~~~~~ 223 (229)
.. .++.++
T Consensus 356 ~~-~vie~~ 363 (364)
T 3p9c_A 356 NA-WAIEFT 363 (364)
T ss_dssp TE-EEEEEE
T ss_pred ce-EEEEEe
Confidence 54 344433
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=114.70 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=76.9
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEE
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVA 152 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V 152 (229)
.......++.+|||||||+|.++..+++.|..+|+|+|++ . .+.++++|+.+++++ ++||+|
T Consensus 56 ~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~I 133 (376)
T 3r0q_C 56 FQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVI 133 (376)
T ss_dssp HTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEE
T ss_pred HhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEE
Confidence 3334457889999999999999999999987799999999 5 256999999998876 899999
Q ss_pred Ecccchhhh----CHHHHHHHHHhccccCcEEEEE
Q 027039 153 FTAHLAEAL----FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~----~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+++.+.+.. .+..++.++.+.|||||.+++.
T Consensus 134 v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 134 ISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp EECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred EEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 996443333 4788999999999999997643
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=100.24 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=82.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
...++.+|||+|||+|..+..+++ +..+++|+|+++. .+.++++|+.+ ++++++||+|+++..
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT 109 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc
Confidence 346788999999999999999999 5569999999975 35688888877 666789999999877
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
.++.++++++.+. |||.+++.... .....++.+.+++.+
T Consensus 110 ---~~~~~~l~~~~~~--~gG~l~~~~~~--~~~~~~~~~~l~~~g 148 (183)
T 2yxd_A 110 ---KNIEKIIEILDKK--KINHIVANTIV--LENAAKIINEFESRG 148 (183)
T ss_dssp ---SCHHHHHHHHHHT--TCCEEEEEESC--HHHHHHHHHHHHHTT
T ss_pred ---ccHHHHHHHHhhC--CCCEEEEEecc--cccHHHHHHHHHHcC
Confidence 5678899999998 99998876644 445667777777665
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=118.73 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCC------CChhhHHHHhC--CCCeEEEecCCCCC------CeEEEcCCCCCCCC------CCceeEEEc
Q 027039 95 FNHSKVLCVSAG------AGHEVMAFNSI--GVADVTGVELMDSL------PLVSRADPHNLPFF------DEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G------~G~~~~~l~~~--g~~~v~~vD~s~~~------~~~~~~d~~~~~~~------~~~fD~V~~ 154 (229)
.++.+||||||| +|..+..++.. +.++|+|+|+++.+ +.++++|+.++++. +++||+|++
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVis 294 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVID 294 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEE
Confidence 567899999999 66667766654 56699999999884 56999999998876 789999999
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+...+..++..+++++.++|||||.+++.
T Consensus 295 dgsH~~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 295 DGSHINAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp CSCCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCcccchhHHHHHHHHHHhcCCCeEEEEE
Confidence 75432236789999999999999998864
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=109.93 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=71.4
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEE--EcCCCCCCCCCCceeE
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVS--RADPHNLPFFDEAFDV 151 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~--~~d~~~~~~~~~~fD~ 151 (229)
....++++.+|||+|||+|.++..+++. ++|+|+|+++. .+.++ ++|+.+++ +++||+
T Consensus 76 ~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~ 151 (276)
T 2wa2_A 76 ERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADT 151 (276)
T ss_dssp HTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSE
T ss_pred HcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCE
Confidence 3355688999999999999999999998 59999999873 23477 78888865 689999
Q ss_pred EEcccchhh-----hCHH---HHHHHHHhccccCc--EEEEEeec
Q 027039 152 AFTAHLAEA-----LFPS---RFVGEMERTVKIGG--VCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~-----~~~~---~~l~~~~~~LkpgG--~lil~~~~ 186 (229)
|+|+.. .+ .+.. +++.++.++||||| .+++-+-.
T Consensus 152 Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 152 VLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 999743 21 1111 47899999999999 88765443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-13 Score=107.46 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=68.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-C------------------CeEEEcCCCCCCCC-CCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-L------------------PLVSRADPHNLPFF-DEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-~------------------~~~~~~d~~~~~~~-~~~fD~V~ 153 (229)
+++.+|||||||+|..+..+++. +..+|+|+|+|+. + +.++++|+.++|.. .+.+|.|+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 67889999999999999999965 4558999999943 2 34888898888632 25677777
Q ss_pred cccch----hhh--CHHHHHHHHHhccccCcEEEEEe
Q 027039 154 TAHLA----EAL--FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 154 ~~~~~----~~~--~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
++... .+. ++.++++++.++|||||.+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 65321 111 34678999999999999998843
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=109.56 Aligned_cols=114 Identities=19% Similarity=0.172 Sum_probs=88.7
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEE
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVA 152 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V 152 (229)
...++++.+|||+|||+|..+..+++. +..+++++|+++. .+.++.+|+.+ ++++++||+|
T Consensus 105 ~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~V 183 (275)
T 1yb2_A 105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAV 183 (275)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEE
T ss_pred HcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEE
Confidence 345678899999999999999999986 4469999999863 35688888887 5667899999
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeee
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
+++ . .++.++++++.++|||||.+++.... ......+.+.+...+|..++...
T Consensus 184 i~~-~---~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 184 IAD-I---PDPWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp EEC-C---SCGGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHHSGGGTEEEEEEEE
T ss_pred EEc-C---cCHHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCeEEEEEE
Confidence 982 2 25778999999999999998877754 33556677777777776655543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-11 Score=105.80 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=95.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
++++.+|||||||+|..+..+++. +..+++++|+ +. .+.++.+|+.+ +++. .||+|++.+
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 257 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF 257 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc
Confidence 467889999999999999999987 4458999998 54 35688999876 3333 499999998
Q ss_pred chhhh-CH--HHHHHHHHhccccCcEEEEEeec----C-------------------CcccHHHHHHHHhcCceeEeeee
Q 027039 157 LAEAL-FP--SRFVGEMERTVKIGGVCMVLMEE----C-------------------AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 157 ~~~~~-~~--~~~l~~~~~~LkpgG~lil~~~~----~-------------------~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+.++. ++ .++++++.++|||||++++.... . ...+..++.+++++.+|..++..
T Consensus 258 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 337 (360)
T 1tw3_A 258 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 337 (360)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 88877 33 47999999999999998876432 1 12356778889999998877666
Q ss_pred eecCC----eeEEEEEEe
Q 027039 211 TVNGS----NMTRILMRR 224 (229)
Q Consensus 211 ~~~~~----~~~~~~~~~ 224 (229)
...+. ....+..++
T Consensus 338 ~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 338 QLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp EEECSSSSCEEEEEEEEE
T ss_pred eCCCCcccCccEEEEEEe
Confidence 55443 134555554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-13 Score=109.54 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCC-C--CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNL-P--FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~-~--~~~~~fD~V~~~ 155 (229)
.++.+|||||||+|..+..+++. +...|+|+|+++. .+.++.+|+.++ + +++++||.|+++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 46789999999999999999987 5568999999976 345888898773 3 678999999987
Q ss_pred cchhhh---------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc-CceeEe
Q 027039 156 HLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT-SRFVDA 207 (229)
Q Consensus 156 ~~~~~~---------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~-~~~~~~ 207 (229)
...... ....+++++.++|||||.+++.+.. ..-.+.+.+.+.. ..+..+
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~--~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW--EPYAEHMLEVMSSIDGYKNL 172 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHTSTTEEEC
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC--HHHHHHHHHHHHhCCCcccc
Confidence 321111 1136999999999999998877754 2223445555553 334433
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-12 Score=112.36 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC------------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL------------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~------------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++.+|||+|||+|.++..++.. +..+|+|+|+++.+ +.+..+|+.+ ++++++||+|+++
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN 299 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence 45689999999999999999988 45699999999762 3468889887 5667899999998
Q ss_pred cchhhh------CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeE
Q 027039 156 HLAEAL------FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD 206 (229)
Q Consensus 156 ~~~~~~------~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~ 206 (229)
...++. ...++++++.+.|||||.++++......+ ...+.+.|+.++.+.
T Consensus 300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~-~~~l~~~fg~~~~~a 355 (375)
T 4dcm_A 300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDY-FHKLKKIFGNCTTIA 355 (375)
T ss_dssp CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCH-HHHHHHHHSCCEEEE
T ss_pred CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCH-HHHHHHhcCCEEEEe
Confidence 443321 12578999999999999999887765544 345677788655443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.7e-13 Score=105.40 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=73.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..+++.+|||+|||+|..+..+++.+ .+|+++|+++. .+.++.+|..+.+.++++||+|+++..
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA 152 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc
Confidence 45789999999999999999999985 59999999875 356888998886666789999999866
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.++.. .++.+.|||||++++.+..
T Consensus 153 ~~~~~-----~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIP-----TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCC-----THHHHTEEEEEEEEEEECS
T ss_pred hhhhh-----HHHHHhcccCcEEEEEEcC
Confidence 66553 2588999999999988775
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=109.39 Aligned_cols=113 Identities=10% Similarity=0.012 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeE--------E---EcCCCCCC---CCCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV--------S---RADPHNLP---FFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~--------~---~~d~~~~~---~~~~~fD~V~~~~~~~~ 160 (229)
.++.+|||||||+|.++..+++.|..+|+|+|+++.|+.. . ..++..++ ++..+||+|++....+
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~- 162 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI- 162 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS-
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh-
Confidence 4678999999999999999999987899999999998763 1 12333332 3344699999864433
Q ss_pred hCHHHHHHHHHhccccCcEEEEEeec----C-------Cc--------ccHHHHHHHHhcCceeEeee
Q 027039 161 LFPSRFVGEMERTVKIGGVCMVLMEE----C-------AG--------REIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~lil~~~~----~-------~~--------~~~~~l~~l~~~~~~~~~~~ 209 (229)
+...++.++.++|||||.+++++.. . +. +...++.+.+...+|....-
T Consensus 163 -sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 163 -SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp -CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred -hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999999999999987322 0 00 13455677777788764443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=106.94 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=89.7
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCcee
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD 150 (229)
.....++++.+|||+|||+|..+..++.. + ..+++++|+++. .+.++++|+.+. +++++||
T Consensus 86 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D 164 (255)
T 3mb5_A 86 VAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVD 164 (255)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEE
T ss_pred HHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcC
Confidence 33345688999999999999999999987 3 569999999965 266888888854 6678999
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc--eeEeeee
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR--FVDAANV 210 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ 210 (229)
+|+++. .++.++++++.+.|||||.+++.... .....++.+.++..+ |..++.+
T Consensus 165 ~v~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 165 HVILDL----PQPERVVEHAAKALKPGGFFVAYTPC--SNQVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp EEEECS----SCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHTGGGBSCCEEE
T ss_pred EEEECC----CCHHHHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHHcCCCccccEEE
Confidence 999841 25678999999999999998876654 445667777777777 6555543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-13 Score=104.27 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=74.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCC-CCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHN-LPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~-~~~~~~~fD~V~~~~ 156 (229)
..++.+|||+|||+|..+..+++.+..+|+|+|+++. .+.++.+|+.+ ++..+++||+|+++.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 3578899999999999999999887679999999975 24577888776 344456799999985
Q ss_pred chhhhCHHHHHHHHH--hccccCcEEEEEeecCC
Q 027039 157 LAEALFPSRFVGEME--RTVKIGGVCMVLMEECA 188 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~--~~LkpgG~lil~~~~~~ 188 (229)
..+.....++++.+. ++|||||.+++......
T Consensus 109 ~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 109 PYAKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 443334566777776 99999999998777643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=110.91 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=75.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
...++.+|||||||+|.++..+++.|..+|+|+|+++. .+.++.+|+.+++++ ++||+|++..+
T Consensus 47 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 47 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 125 (348)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCC
T ss_pred ccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCc
Confidence 44688999999999999999999987779999999962 356899999998765 68999999866
Q ss_pred hhhh---CHHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~---~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.++. ...+.+.++.+.|||||.+++..
T Consensus 126 ~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 126 GYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp BTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 5554 34678889999999999987543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-12 Score=103.29 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-----CCCeEEEecCCCCC----------CeEEEcCCCCC---CCCC-CceeEEEccc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-----GVADVTGVELMDSL----------PLVSRADPHNL---PFFD-EAFDVAFTAH 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-----g~~~v~~vD~s~~~----------~~~~~~d~~~~---~~~~-~~fD~V~~~~ 156 (229)
++.+|||||||+|..+..+++. +.++|+|+|+++.+ +.++++|+.+. +..+ .+||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 5679999999999999999875 34699999999875 55889999884 5433 4799999864
Q ss_pred chhhhCHHHHHHHHHh-ccccCcEEEEEee--cCCcccHHHHHHHHhcC
Q 027039 157 LAEALFPSRFVGEMER-TVKIGGVCMVLME--ECAGREIKQIVELFRTS 202 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~-~LkpgG~lil~~~--~~~~~~~~~l~~l~~~~ 202 (229)
. |.+..+++.++.+ +|||||++++... ....+....+.+.++..
T Consensus 161 ~--~~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 161 A--HANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF 207 (236)
T ss_dssp S--CSSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred c--hHhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence 3 3477889999997 9999999885321 11122334677777765
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=106.79 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=92.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-C
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~ 162 (229)
++++.+|||||||+|..+..+++. +..+++++|+ +. .+.++.+|+.+ +++ .||+|++.++.++. +
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTD 261 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCH
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCC--CccEEEeehhhccCCH
Confidence 467789999999999999999987 5569999998 54 25688899876 554 39999999988888 5
Q ss_pred HH--HHHHHHHhcccc---CcEEEEEeecC-------------------------CcccHHHHHHHHhcCceeEeeeeee
Q 027039 163 PS--RFVGEMERTVKI---GGVCMVLMEEC-------------------------AGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 163 ~~--~~l~~~~~~Lkp---gG~lil~~~~~-------------------------~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+. ++++++.++||| ||++++.-... ...+..++.++++..+|..++....
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 341 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPL 341 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEec
Confidence 55 899999999999 99988763221 1134567788888888887776665
Q ss_pred cCC
Q 027039 213 NGS 215 (229)
Q Consensus 213 ~~~ 215 (229)
.|.
T Consensus 342 ~~~ 344 (352)
T 1fp2_A 342 TGF 344 (352)
T ss_dssp ETT
T ss_pred CCC
Confidence 554
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=110.29 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||||||+|.++..+++.|..+|+|+|+++. .+.++++|+.++++++++||+|++..+.+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 578899999999999999999988779999999942 25689999999988878999999974333
Q ss_pred h---h-CHHHHHHHHHhccccCcEEE
Q 027039 160 A---L-FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 160 ~---~-~~~~~l~~~~~~LkpgG~li 181 (229)
. . .+..++.++.++|||||.++
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 2 2 57889999999999999986
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=102.85 Aligned_cols=118 Identities=8% Similarity=-0.002 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe--------------EEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~--------------~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.+..+|||+|||+|.++..++.. +..+|+|+|+++.+++ +...|.... .+.++||+|++..+.|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHH
Confidence 78999999999999999999887 5559999999988443 444555443 3568999999999999
Q ss_pred hh-CHHHHHHHHHhccccCcEEEEEeecCC--------cccHHHHHHHHhcCceeEeeeeeecC
Q 027039 160 AL-FPSRFVGEMERTVKIGGVCMVLMEECA--------GREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 160 ~~-~~~~~l~~~~~~LkpgG~lil~~~~~~--------~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
++ +....+.++.+.|||||.++ ..+.+. .....+.-+.+-..+...+..++..+
T Consensus 127 lL~~~~~al~~v~~~L~pggvfI-Sfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~n 189 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFVI-SFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIGN 189 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEEE-EEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEETT
T ss_pred hhhhhHHHHHHHHHHhCCCCEEE-EeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeCc
Confidence 88 44567779999999999977 666211 22333444444466666666665543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.7e-13 Score=103.09 Aligned_cols=94 Identities=14% Similarity=0.055 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCC----CCCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNL----PFFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~----~~~~~~fD~V~~ 154 (229)
.++.+|||+|||+|..+..++..+..+|+|+|+++. .+.++++|+.+. ++++++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 578899999999999999988887679999999975 256888888763 223679999999
Q ss_pred ccchhhhCHHHHHHHH--HhccccCcEEEEEeecCC
Q 027039 155 AHLAEALFPSRFVGEM--ERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~--~~~LkpgG~lil~~~~~~ 188 (229)
+...+.....+.++.+ .++|||||.+++......
T Consensus 123 ~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 123 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 8654433667777777 889999999998777643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-12 Score=104.90 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=86.2
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC------------------CCeEEEcCCCCCCCCCCcee
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS------------------LPLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~------------------~~~~~~~d~~~~~~~~~~fD 150 (229)
...+.++.+|||+|||+|.++..++.. +..+++++|+++. .+.++++|+.+.++++++||
T Consensus 94 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D 173 (280)
T 1i9g_A 94 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD 173 (280)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred HcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCcee
Confidence 335688999999999999999999985 3569999999854 35688889888887788999
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc-CceeEee
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT-SRFVDAA 208 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~-~~~~~~~ 208 (229)
+|+++. .++.++++++.++|||||.+++.+.. .....++.+.++. .+|..++
T Consensus 174 ~v~~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~--~~~~~~~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 174 RAVLDM----LAPWEVLDAVSRLLVAGGVLMVYVAT--VTQLSRIVEALRAKQCWTEPR 226 (280)
T ss_dssp EEEEES----SCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHHSSBCCCE
T ss_pred EEEECC----cCHHHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHhcCCcCCcE
Confidence 999832 25778999999999999998877765 3344555555554 5554443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=105.60 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeE--------EE-----------cCCCCCCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV--------SR-----------ADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~--------~~-----------~d~~~~~~~~~~fD~V~~~ 155 (229)
.++.+|||||||+|.++..+++.|..+|+|+|+++.+++. .. .+....++...+||+++++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 4577999999999999999999976799999999997652 11 1111111223456665553
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec---CC----------------cccHHHHHHHHhcCceeEee
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE---CA----------------GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~---~~----------------~~~~~~l~~l~~~~~~~~~~ 208 (229)
...++.++.++|||||.+++.+.. .. ..+..++.+++...+|..+.
T Consensus 116 -------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~ 180 (232)
T 3opn_A 116 -------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKG 180 (232)
T ss_dssp -------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred -------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEE
Confidence 267899999999999999986421 00 01345677778877776443
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.2e-12 Score=104.27 Aligned_cols=92 Identities=16% Similarity=0.036 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCC---ChhhHHHHhC-CCCeEEEecCCCC-------------CCeEEEcCCCCCC-----------CCCC
Q 027039 96 NHSKVLCVSAGA---GHEVMAFNSI-GVADVTGVELMDS-------------LPLVSRADPHNLP-----------FFDE 147 (229)
Q Consensus 96 ~~~~vLDiG~G~---G~~~~~l~~~-g~~~v~~vD~s~~-------------~~~~~~~d~~~~~-----------~~~~ 147 (229)
...+|||||||+ |..+..+... +..+|+++|+++. .+.++++|+.+.+ ++.+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 9887766654 4469999999976 3458999987631 2335
Q ss_pred ceeEEEcccchhhh-C--HHHHHHHHHhccccCcEEEEEeecC
Q 027039 148 AFDVAFTAHLAEAL-F--PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 148 ~fD~V~~~~~~~~~-~--~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
+||+|+++.+.+++ + +.++++++.++|||||.+++.....
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 89999999888887 4 7999999999999999999776554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=103.76 Aligned_cols=91 Identities=15% Similarity=0.045 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCC-CCCCCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHN-LPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~-~~~~~~~fD~V~~~~~~~ 159 (229)
++.+|||+|||+|..+..++..+..+|+|+|+++. .+.++++|+.+ ++..+++||+|+++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 67899999999999999988887669999999976 24588888876 566678999999975433
Q ss_pred hhCHHHHHHHHHh--ccccCcEEEEEeec
Q 027039 160 ALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (229)
Q Consensus 160 ~~~~~~~l~~~~~--~LkpgG~lil~~~~ 186 (229)
.....++++++.+ +|||||.+++....
T Consensus 134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 3366778888865 59999999877765
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-12 Score=104.41 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=84.2
Q ss_pred cccCchhHHhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecC-CCCC--------------
Q 027039 67 RLWSSKSWKQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVEL-MDSL-------------- 131 (229)
Q Consensus 67 ~~~~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~-s~~~-------------- 131 (229)
.+|....|.... .+...+.......++.+|||+|||+|..+..++..|..+|+|+|+ ++.+
T Consensus 54 ~~~g~~~~~~~~----~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~ 129 (281)
T 3bzb_A 54 PLWTSHVWSGAR----ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTAN 129 (281)
T ss_dssp --------CHHH----HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-
T ss_pred CCCCceeecHHH----HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhh
Confidence 466666663322 222222222233578899999999999999999887669999999 6542
Q ss_pred -----------CeEEEcCCCCCC--C----CCCceeEEEcccchhhh-CHHHHHHHHHhccc---c--CcEEEEEeecCC
Q 027039 132 -----------PLVSRADPHNLP--F----FDEAFDVAFTAHLAEAL-FPSRFVGEMERTVK---I--GGVCMVLMEECA 188 (229)
Q Consensus 132 -----------~~~~~~d~~~~~--~----~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~Lk---p--gG~lil~~~~~~ 188 (229)
+.+...+..+.. + .+++||+|++..+.++. +...+++.+.++|| | ||.++++.....
T Consensus 130 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~ 209 (281)
T 3bzb_A 130 SCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR 209 (281)
T ss_dssp ---------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--
T ss_pred hcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee
Confidence 223333332211 1 35789999997766666 78899999999999 9 999887665533
Q ss_pred c---ccHHHHHHHHhcCc-eeE
Q 027039 189 G---REIKQIVELFRTSR-FVD 206 (229)
Q Consensus 189 ~---~~~~~l~~l~~~~~-~~~ 206 (229)
. +....+.+.++..+ |..
T Consensus 210 ~~~~~~~~~~~~~l~~~G~f~v 231 (281)
T 3bzb_A 210 PHLAERDLAFFRLVNADGALIA 231 (281)
T ss_dssp ------CTHHHHHHHHSTTEEE
T ss_pred cccchhHHHHHHHHHhcCCEEE
Confidence 2 22345666667666 443
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=104.11 Aligned_cols=92 Identities=20% Similarity=0.111 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCCC--CCCCc-eeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNLP--FFDEA-FDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~~--~~~~~-fD~V~~~ 155 (229)
++.+|||+|||+|.++..++..+..+|+|+|+++. .++++++|+.+.. +.+++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 67899999999999999988887679999999965 2457788877643 23678 9999997
Q ss_pred cchhhhCHHHHHHHH--HhccccCcEEEEEeecC
Q 027039 156 HLAEALFPSRFVGEM--ERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~--~~~LkpgG~lil~~~~~ 187 (229)
...+.....++++++ .++|||||.+++.....
T Consensus 133 ~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFHFNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 553322567788888 67899999998777653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=103.26 Aligned_cols=88 Identities=19% Similarity=0.142 Sum_probs=72.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
...++.+|||||||+|..+..+++.+ .+|+|+|+++. .+.++.+|+.+....+++||+|+++...+
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAP 145 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHH
Confidence 45788999999999999999999987 59999999875 35688888877333467999999987666
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.. .++.+.|||||.+++.+..
T Consensus 146 ~~~-----~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 146 TLL-----CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp SCC-----HHHHHTEEEEEEEEEEECS
T ss_pred HHH-----HHHHHHcCCCcEEEEEEcC
Confidence 553 3688999999999988765
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=107.38 Aligned_cols=121 Identities=13% Similarity=0.196 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCce---eEEEcc-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAF---DVAFTA- 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~f---D~V~~~- 155 (229)
++.+|||+|||+|..+..++..+..+|+|+|+|+. .+.++++|+.+. ++ ++| |+|++|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnP 200 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNP 200 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcC
Confidence 66799999999999999998874459999999976 166889998873 22 578 999998
Q ss_pred -cchhh--------hC----------HHHHHHHHH-hccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 156 -HLAEA--------LF----------PSRFVGEME-RTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 156 -~~~~~--------~~----------~~~~l~~~~-~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
++... .. ...+++++. +.+||||.+++.++. .....+.+++... ..+.....
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~---~q~~~v~~~~~~~-----~~~~D~~g 272 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE---DQVEELKKIVSDT-----VFLKDSAG 272 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT---TCHHHHTTTSTTC-----EEEECTTS
T ss_pred CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc---hHHHHHHHHHHhC-----CeecccCC
Confidence 11100 01 237899999 999999998876554 4456677777765 33344455
Q ss_pred eeEEEEEEecc
Q 027039 216 NMTRILMRRTR 226 (229)
Q Consensus 216 ~~~~~~~~~~~ 226 (229)
..|.++.++++
T Consensus 273 ~~R~~~~~~k~ 283 (284)
T 1nv8_A 273 KYRFLLLNRRS 283 (284)
T ss_dssp SEEEEEEECCC
T ss_pred CceEEEEEEcc
Confidence 55777766655
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-12 Score=109.52 Aligned_cols=117 Identities=17% Similarity=0.090 Sum_probs=87.8
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEE
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVA 152 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V 152 (229)
.....+++.+|||+|||+|.++..++.. +..+++|+|+++. .+.++++|+.+++.+.+.||+|
T Consensus 197 ~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~I 276 (354)
T 3tma_A 197 RLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRI 276 (354)
T ss_dssp HHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEE
T ss_pred HHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEE
Confidence 3345678899999999999999999986 3459999999976 3679999999988777889999
Q ss_pred Ecccch--------hhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 153 FTAHLA--------EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 153 ~~~~~~--------~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+++--. +.. ...++++++.++|||||.+++.+.. ...+.++.+ .++...+....
T Consensus 277 i~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~-----~~~~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 277 LANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR-----PALLKRALP-PGFALRHARVV 339 (354)
T ss_dssp EECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC-----HHHHHHHCC-TTEEEEEEEEC
T ss_pred EECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC-----HHHHHHHhh-cCcEEEEEEEE
Confidence 997211 111 2377899999999999999988764 122334444 66666555544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-13 Score=111.93 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=92.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||+|||+|..+..++..+ .+|+|+|+++. .+.++++|+.+++ ++++||+|+++...
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 478999999999999999999997 59999999975 3568899988876 56899999998666
Q ss_pred hhh-CHHHHHHHHHhccccCcEEEEEeec----------CCcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 159 EAL-FPSRFVGEMERTVKIGGVCMVLMEE----------CAGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 159 ~~~-~~~~~l~~~~~~LkpgG~lil~~~~----------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
++. ++...+.++.++|||||.+++.... .......++..+++..+...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~~~~~ 223 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKL 223 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEEETTEE
T ss_pred CCcchhhhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEehhhcCcc
Confidence 655 4555777899999999985533211 123356778888887777777777666654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=104.68 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=68.5
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecC----CCC-------------CCeEEEc-CCCCCCCCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVEL----MDS-------------LPLVSRA-DPHNLPFFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~----s~~-------------~~~~~~~-d~~~~~~~~~~fD~V~ 153 (229)
..++++.+|||+|||+|.++..+++. ++|+|+|+ ++. .+.++++ |+.+++ +++||+|+
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~ 153 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLL 153 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEE
Confidence 45688999999999999999999998 48999998 332 1346777 777765 56899999
Q ss_pred cccch---hhh-CHH---HHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHLA---EAL-FPS---RFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~~---~~~-~~~---~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|+... ++. +.. .++.++.++|||||.+++-+..
T Consensus 154 sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 154 CDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred ECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 96332 111 222 5788999999999988865543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=100.48 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=86.0
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..+.++.+|||+|||+|..+..+++. ..+++++|+++. .+.+..+|+.+..+++++||+|+++
T Consensus 87 ~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 165 (248)
T 2yvl_A 87 LNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD 165 (248)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC
T ss_pred cCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC
Confidence 34578999999999999999999988 459999999875 3457788888754356789999984
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
. .++.++++++.+.|||||.+++.... .....++.+.++.. |..++.+
T Consensus 166 ~----~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~-f~~~~~~ 213 (248)
T 2yvl_A 166 V----REPWHYLEKVHKSLMEGAPVGFLLPT--ANQVIKLLESIENY-FGNLEVV 213 (248)
T ss_dssp S----SCGGGGHHHHHHHBCTTCEEEEEESS--HHHHHHHHHHSTTT-EEEEEEE
T ss_pred C----cCHHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhh-CCcceEE
Confidence 1 15678899999999999999887765 34556677777665 6655443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-12 Score=116.80 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCC---------------------CCeEEEcCCCCCCCCCCceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS---------------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~---------------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
.++.+|||||||+|.++..+++.+ ..+|+|+|+++. .+.++++|+.++++.+++||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 478999999999999999999985 259999999975 145899999999998999999
Q ss_pred EEcccchhhhC-HH--HHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAHLAEALF-PS--RFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~~~-~~--~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|++..+.+|+. +. .+++++.++|||| .+++.+..
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 99999999984 33 5899999999999 76666643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=100.59 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC----------------CeEEEcCCCCC-CCC-----CCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNL-PFF-----DEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~----------------~~~~~~d~~~~-~~~-----~~~fD 150 (229)
.++.+|||||||+|..+..+++. + .++|+++|+++.+ +.++++|+.+. +.. +++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 46789999999999999999986 3 5699999999873 34778887653 211 47999
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+|++... ......+++++.++|||||.+++-
T Consensus 139 ~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 139 FIFIDAD--KTNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp EEEEESC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCC--hHHhHHHHHHHHHhcCCCeEEEEE
Confidence 9998643 225677899999999999998763
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-12 Score=105.39 Aligned_cols=113 Identities=12% Similarity=0.156 Sum_probs=88.3
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~ 153 (229)
..+.++.+|||+|||+|..+..++.. + ..+++++|+++. .+.++.+|+.+. +++++||+|+
T Consensus 108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~ 186 (277)
T 1o54_A 108 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALF 186 (277)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEE
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEE
Confidence 35678999999999999999999887 4 569999999875 245778888775 5667999999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeee
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
++. .++.++++++.+.|||||.+++.... .....++.+.++..+|..++.+.
T Consensus 187 ~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~--~~~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 187 LDV----PDPWNYIDKCWEALKGGGRFATVCPT--TNQVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp ECC----SCGGGTHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHSSEEEEEEEC
T ss_pred ECC----cCHHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCceeEEEE
Confidence 842 24678999999999999998877654 33556677777777777665543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-11 Score=102.11 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=83.5
Q ss_pred ccCCCCCeEEEEcCCC------ChhhHHHHhC-C-CCeEEEecCCCC--CCeE-EEcCCCCCCCCCCceeEEEcccchh-
Q 027039 92 SLLFNHSKVLCVSAGA------GHEVMAFNSI-G-VADVTGVELMDS--LPLV-SRADPHNLPFFDEAFDVAFTAHLAE- 159 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~------G~~~~~l~~~-g-~~~v~~vD~s~~--~~~~-~~~d~~~~~~~~~~fD~V~~~~~~~- 159 (229)
..++++.+|||+|||+ |. ..+++. + .++|+|+|+++. .+.+ +++|+.+.+++ ++||+|+++....
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~ 135 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTA-NKWDLIISDMYDPR 135 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCS-SCEEEEEECCCCCC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCcc-CcccEEEEcCCccc
Confidence 4568899999999965 55 334443 4 469999999987 3568 99999988764 7899999962211
Q ss_pred -------h---h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 160 -------A---L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 160 -------~---~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+ . ...++++++.++|||||.+++.+.... ...++.++++..+|..++.+
T Consensus 136 ~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~--~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 136 TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS--WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp ---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS--CCHHHHHHHTTEEEEEEEEE
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC--CHHHHHHHHHHcCCcEEEEE
Confidence 0 1 135789999999999999997664432 33578888888777766655
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-12 Score=108.97 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||+|||+|.++..+++. +..+|+++|+++.+ ..++.+|..+.+ +++||+|+++...+
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFH 272 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCcc
Confidence 45779999999999999999988 34599999999762 347778877643 67999999985444
Q ss_pred h-----h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 160 A-----L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 160 ~-----~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
+ . ...++++++.++|||||.++++......+ ...+.+.|+.+.
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~l~~~f~~~~ 321 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPY-PDVLDETFGFHE 321 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSH-HHHHHHHHSCCE
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCc-HHHHHHhcCceE
Confidence 2 2 46889999999999999999877664432 234556676553
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=105.01 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=75.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CC-CeEEEecCCCC--------------------------CCeEEEcCCCCC--
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GV-ADVTGVELMDS--------------------------LPLVSRADPHNL-- 142 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~-~~v~~vD~s~~--------------------------~~~~~~~d~~~~-- 142 (229)
.+.++.+|||+|||+|.++..++.. |. ++|+++|+++. .+.++++|+.+.
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 4678999999999999999999987 43 69999999863 367889999886
Q ss_pred CCCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh
Q 027039 143 PFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (229)
Q Consensus 143 ~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~ 200 (229)
++++++||+|+++.. .+..++.++.++|||||.+++.... .....++.+.++
T Consensus 182 ~~~~~~fD~V~~~~~----~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~ 233 (336)
T 2b25_A 182 DIKSLTFDAVALDML----NPHVTLPVFYPHLKHGGVCAVYVVN--ITQVIELLDGIR 233 (336)
T ss_dssp ------EEEEEECSS----STTTTHHHHGGGEEEEEEEEEEESS--HHHHHHHHHHHH
T ss_pred ccCCCCeeEEEECCC----CHHHHHHHHHHhcCCCcEEEEEeCC--HHHHHHHHHHHH
Confidence 566778999998532 3555889999999999998866654 444555555544
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-12 Score=105.90 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCCCh----hhHHHHhC-C----CCeEEEecCCCC------------------------------------
Q 027039 96 NHSKVLCVSAGAGH----EVMAFNSI-G----VADVTGVELMDS------------------------------------ 130 (229)
Q Consensus 96 ~~~~vLDiG~G~G~----~~~~l~~~-g----~~~v~~vD~s~~------------------------------------ 130 (229)
++.+|||+|||+|. .+..+++. | ..+|+|+|+|+.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 46799999999998 44555554 3 238999999854
Q ss_pred ----------CCeEEEcCCCCCCCC-CCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeec
Q 027039 131 ----------LPLVSRADPHNLPFF-DEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 131 ----------~~~~~~~d~~~~~~~-~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+.|.++|+.+.|++ +++||+|+|.++..++++ .++++++++.|||||.+++-..+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE 254 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE 254 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 134677788776665 578999999988888854 68999999999999998764443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=99.00 Aligned_cols=113 Identities=13% Similarity=0.196 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCC-CCCCC-----Ccee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHN-LPFFD-----EAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~-~~~~~-----~~fD 150 (229)
.++.+|||||||+|..+..+++. +.++|+++|+++. .+.++++|+.+ ++... ++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 46789999999999999999985 3569999999986 25688888755 33222 7899
Q ss_pred EEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 151 VAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 151 ~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+|++....++. ...+++..+ ++|||||.+++. ........++.+.++.........+
T Consensus 137 ~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (221)
T 3u81_A 137 MVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLAD--NVIVPGTPDFLAYVRGSSSFECTHY 194 (221)
T ss_dssp EEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEES--CCCCCCCHHHHHHHHHCTTEEEEEE
T ss_pred EEEEcCCcccchHHHHHHHhc-cccCCCeEEEEe--CCCCcchHHHHHHHhhCCCceEEEc
Confidence 99998654444 456777777 999999996643 2223334556666654443433333
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-12 Score=107.69 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCCCCC--CCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHNLPF--FDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~~~~--~~~~fD~V 152 (229)
.++.+|||||||+|..+..+++. +..+|+++|+++. .+.++.+|+.+.+. .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 56789999999999999999987 5679999999965 24577888776543 47899999
Q ss_pred Ecccchhhh-----CHHHHHHHHHhccccCcEEEEEeecC--CcccHHHHHHHHhcCceeEeeee
Q 027039 153 FTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 153 ~~~~~~~~~-----~~~~~l~~~~~~LkpgG~lil~~~~~--~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+++...... ...++++++.++|||||.+++..... .......+.+.++..+|..+...
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 997443321 11689999999999999998775542 22345667777776666555443
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.3e-12 Score=110.38 Aligned_cols=92 Identities=20% Similarity=0.142 Sum_probs=70.9
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC------------------------CeEEEcCCCCC--CC
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL------------------------PLVSRADPHNL--PF 144 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~------------------------~~~~~~d~~~~--~~ 144 (229)
..++++.+|||||||+|..+..++.. |..+|+|+|+++.+ +.++++|.... ++
T Consensus 238 l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~ 317 (433)
T 1u2z_A 238 CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRV 317 (433)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHH
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccc
Confidence 35678999999999999999999997 77789999998752 33556654322 22
Q ss_pred --CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 145 --FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 145 --~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..++||+|+++......++.++++++.+.|||||++++.
T Consensus 318 ~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 318 AELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence 247899999975543336678899999999999998754
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-11 Score=102.64 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=93.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCC--------CCCeEEEcCCCCCCCCCCceeEEEcccchhhh-CHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMD--------SLPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPS 164 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~ 164 (229)
+++.+|||||||+|..+..+++. +..+++++|++. ..+.++.+|+.+ +++ .||+|+++++.++. ++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~ 268 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQ 268 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHH
Confidence 56789999999999999999987 556899999841 136688999987 665 49999999988877 555
Q ss_pred --HHHHHHHhcccc---CcEEEEEeec---C-----------------------CcccHHHHHHHHhcCceeEeeeeeec
Q 027039 165 --RFVGEMERTVKI---GGVCMVLMEE---C-----------------------AGREIKQIVELFRTSRFVDAANVTVN 213 (229)
Q Consensus 165 --~~l~~~~~~Lkp---gG~lil~~~~---~-----------------------~~~~~~~l~~l~~~~~~~~~~~~~~~ 213 (229)
++++++.++||| ||++++.-.. . ...+..++.+++++.+|..++.....
T Consensus 269 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 348 (358)
T 1zg3_A 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPIS 348 (358)
T ss_dssp HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEET
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEecC
Confidence 899999999999 9998875321 1 11255677888888888877766655
Q ss_pred CCeeEEEE
Q 027039 214 GSNMTRIL 221 (229)
Q Consensus 214 ~~~~~~~~ 221 (229)
+. ..++.
T Consensus 349 ~~-~~vie 355 (358)
T 1zg3_A 349 GF-KSLIE 355 (358)
T ss_dssp TT-EEEEE
T ss_pred CC-cEEEE
Confidence 54 24443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.7e-12 Score=99.86 Aligned_cols=89 Identities=19% Similarity=0.104 Sum_probs=70.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
...++.+|||||||+|..+..+++.. ..+|+++|+++. .+.+..+|.......+++||+|+++
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 153 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT 153 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence 45788999999999999999999873 259999999865 2557788875432236789999998
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
...++.. .++.+.|||||++++.+..
T Consensus 154 ~~~~~~~-----~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 154 AAGPKIP-----EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SBBSSCC-----HHHHHTEEEEEEEEEEESS
T ss_pred CchHHHH-----HHHHHHcCCCcEEEEEECC
Confidence 7666553 4789999999999988765
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.1e-12 Score=106.56 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=72.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||||||+|..+..+++. + .++|+|+|+++. .+.++.+|..+.+.++++||+|++.
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 151 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT 151 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEc
Confidence 4578999999999999999999987 3 257999999975 2568889988855556899999998
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
...++.. +++.+.|||||++++.+..
T Consensus 152 ~~~~~~~-----~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 152 VGVDEVP-----ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp SBBSCCC-----HHHHHHEEEEEEEEEEBCB
T ss_pred CCHHHHH-----HHHHHhcCCCcEEEEEECC
Confidence 7666554 5788999999999877643
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.1e-11 Score=101.88 Aligned_cols=132 Identities=18% Similarity=0.123 Sum_probs=101.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCC--------------CCCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMD--------------SLPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~--------------~~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++...+|+|||||+|..+..+++. +..+++..|..+ ..++++.+|+.+.|.+ .+|++++.++
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~v 253 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARV 253 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESS
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeee
Confidence 4567789999999999999999988 666888888632 1467999999876654 4799999988
Q ss_pred hhhh-CH--HHHHHHHHhccccCcEEEEEeec---C--------------------CcccHHHHHHHHhcCceeEeeeee
Q 027039 158 AEAL-FP--SRFVGEMERTVKIGGVCMVLMEE---C--------------------AGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 158 ~~~~-~~--~~~l~~~~~~LkpgG~lil~~~~---~--------------------~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
.|.. ++ .++++++++.|+|||+++++=.. . .+.+..++.+++.+.+|..++-..
T Consensus 254 lh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~ 333 (353)
T 4a6d_A 254 LHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKK 333 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 8876 33 57899999999999998865321 1 123567788999999998777555
Q ss_pred ecCCeeEEEEEEeccC
Q 027039 212 VNGSNMTRILMRRTRL 227 (229)
Q Consensus 212 ~~~~~~~~~~~~~~~~ 227 (229)
. ++....|+.+|++.
T Consensus 334 ~-~~~~~~i~ArKgt~ 348 (353)
T 4a6d_A 334 T-GAIYDAILARKGTH 348 (353)
T ss_dssp C-SSSCEEEEEECCCC
T ss_pred c-CCceEEEEEEecCc
Confidence 4 44457788888764
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-11 Score=98.75 Aligned_cols=87 Identities=11% Similarity=0.042 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCC-CCCC--CCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHN-LPFF--DEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~-~~~~--~~~fD~V~ 153 (229)
.++.+|||||||+|..+..+++. + .++|+++|+++. .+.++.+|+.+ ++.. .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 57889999999999999999987 4 569999999975 35688888866 3332 34999999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+... ......+++++.++|||||.+++.
T Consensus 142 ~d~~--~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 142 IDAD--KPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp ECSC--GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred ECCc--hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 8542 224677999999999999987754
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=100.34 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=72.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-----------------------CCeEEEcCCCC-CC--CCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-----------------------LPLVSRADPHN-LP--FFD 146 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-----------------------~~~~~~~d~~~-~~--~~~ 146 (229)
++++.+|||||||+|.++..++.. +...++|+|+++. .+.++.+|+.+ ++ +++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 367889999999999999999988 4458999999853 35688999887 66 778
Q ss_pred CceeEEEcccchhhh---------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 147 EAFDVAFTAHLAEAL---------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~---------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+++|.|+.+.-.... ...+++.++.++|||||.+++.++.
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 899999865211110 0148999999999999999986654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=105.91 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccch-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLA- 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~- 158 (229)
.++.+|||||||+|.++...++.|..+|+|+|.++. .+.++++|++++.++ ++||+|++..+.
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 468899999999999999888889889999999863 356999999998775 689999995322
Q ss_pred ---hhhCHHHHHHHHHhccccCcEEE
Q 027039 159 ---EALFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 159 ---~~~~~~~~l~~~~~~LkpgG~li 181 (229)
+......++....+.|||||.++
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred cccccchhhhHHHHHHhhCCCCceEC
Confidence 22256788888899999999865
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-12 Score=115.38 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCC--CCCCCceeEEEcccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNL--PFFDEAFDVAFTAHL 157 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~--~~~~~~fD~V~~~~~ 157 (229)
..+.+|||||||.|.++..+++.|. +|+|+|+++.+ +++.+++++++ ++++++||+|+|..+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 5678999999999999999999997 99999999762 45888888886 466789999999999
Q ss_pred hhhh-CHHH--HHHHHHhccccCcEEEEEeecC
Q 027039 158 AEAL-FPSR--FVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 158 ~~~~-~~~~--~l~~~~~~LkpgG~lil~~~~~ 187 (229)
.+|+ ++.. .+..+.+.|+++|..++..-..
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 9998 6643 3456778899998777655443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-11 Score=109.24 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=74.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCC---------------CCCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD---------------SLPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~---------------~~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
...++.+|||||||+|.++..+++.|..+|+|+|+++ ..+.++++|+.+++++ ++||+|+++.+
T Consensus 155 ~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~ 233 (480)
T 3b3j_A 155 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 233 (480)
T ss_dssp GGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred hhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCc
Confidence 3457889999999999999999988777999999986 1356899999987764 68999999876
Q ss_pred hhhh-C--HHHHHHHHHhccccCcEEEEEe
Q 027039 158 AEAL-F--PSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 158 ~~~~-~--~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.++. . ..+.+.++.+.|||||.+++..
T Consensus 234 ~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 234 GYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred hHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 5655 2 3567778899999999987533
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-12 Score=98.50 Aligned_cols=92 Identities=23% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCC-C-C--CCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNL-P-F--FDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~-~-~--~~~~fD~V~~~~ 156 (229)
+++.+|||+|||+|..+..+++.+. +++|+|+++. .++++++|+.+. + . .+++||+|+++.
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4788999999999999999999976 5999999976 356778887662 2 1 134899999985
Q ss_pred chhhhCHHHHHHHHH--hccccCcEEEEEeecCC
Q 027039 157 LAEALFPSRFVGEME--RTVKIGGVCMVLMEECA 188 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~--~~LkpgG~lil~~~~~~ 188 (229)
..+ ....++++.+. ++|||||.+++.+....
T Consensus 119 ~~~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA-MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT-SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc-hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 443 44456666666 99999999988777644
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.9e-12 Score=97.53 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=80.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCeEEEcCCCCCCC---CCCceeEEEcccchhhh--CHHH
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPLVSRADPHNLPF---FDEAFDVAFTAHLAEAL--FPSR 165 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~~~~~d~~~~~~---~~~~fD~V~~~~~~~~~--~~~~ 165 (229)
.++++.+|||||||... ..+.+. .. +-+.....+.++++|+.++++ ++++||+|+++.+.++. ++.+
T Consensus 9 g~~~g~~vL~~~~g~v~--vD~s~~ml~~----a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~ 82 (176)
T 2ld4_A 9 GISAGQFVAVVWDKSSP--VEALKGLVDK----LQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAE 82 (176)
T ss_dssp TCCTTSEEEEEECTTSC--HHHHHHHHHH----HHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHH
T ss_pred CCCCCCEEEEecCCcee--eeCCHHHHHH----HHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHH
Confidence 46899999999999742 111110 00 000001137789999999887 78999999998777766 7799
Q ss_pred HHHHHHhccccCcEEEEEeecCC-------cccHHHHHHHHhcCceeEeeeee
Q 027039 166 FVGEMERTVKIGGVCMVLMEECA-------GREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 166 ~l~~~~~~LkpgG~lil~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
++++++++|||||++++...... ..+..++.+.+...+|+.+.+..
T Consensus 83 ~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGfi~~~~~~ 135 (176)
T 2ld4_A 83 ILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQ 135 (176)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCCcEeecCc
Confidence 99999999999999998544321 12467888999999996655543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=95.07 Aligned_cols=128 Identities=9% Similarity=0.019 Sum_probs=91.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCC-CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
+++++.+|||||||+|..+..++..+ ..+|+|+|+++. .+.+..+|..+...++++||+|+..
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 18 YVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred hCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence 45788999999999999999999984 568999999987 2568899988865544579998865
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee--eecCCeeEEEEEEec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV--TVNGSNMTRILMRRT 225 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 225 (229)
.+.. .-..+++.+..+.|+++|++++.- . .....+.+.+...+|.-+.+- .-.|.-..++...++
T Consensus 98 GmGg-~lI~~IL~~~~~~l~~~~~lIlqp-~---~~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~ 164 (230)
T 3lec_A 98 GMGG-RLIADILNNDIDKLQHVKTLVLQP-N---NREDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHG 164 (230)
T ss_dssp EECH-HHHHHHHHHTGGGGTTCCEEEEEE-S---SCHHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEEC
T ss_pred CCch-HHHHHHHHHHHHHhCcCCEEEEEC-C---CChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence 4333 123567888889999999977443 2 235667777777777666653 445555556555554
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-11 Score=99.16 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=69.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCC-CceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFD-EAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~-~~fD~V~~~ 155 (229)
.+.++.+|||||||+|..+..+++. + .+|+++|+++. .+.++.+|. ..++++ .+||+|+++
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~ 165 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVT 165 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEEC
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEEC
Confidence 4578899999999999999999988 5 69999999875 245778887 334444 359999998
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecC
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
...++.. .++.+.|||||++++.+...
T Consensus 166 ~~~~~~~-----~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 166 AGAPKIP-----EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp SBBSSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred CcHHHHH-----HHHHHhcCCCcEEEEEEecC
Confidence 6655443 36889999999999888753
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=94.04 Aligned_cols=127 Identities=10% Similarity=0.054 Sum_probs=91.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCC-CCeEEEecCCCC----------------CCeEEEcCCCC-CCCCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDS----------------LPLVSRADPHN-LPFFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~----------------~~~~~~~d~~~-~~~~~~~fD~V~~ 154 (229)
.++++.+|||||||+|..+..++..+ ..+|+|+|+++. .+.+..+|..+ ++. +.+||+|+.
T Consensus 12 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~Ivi 90 (225)
T 3kr9_A 12 FVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITI 90 (225)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEE
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEE
Confidence 45788999999999999999999984 668999999987 25588888754 432 236999887
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee--eecCCeeEEEEEEec
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV--TVNGSNMTRILMRRT 225 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 225 (229)
..+... ...+++.+..+.|+|+|++++. +. .....+.+.+...+|.-+.+- .-.|.-..++...++
T Consensus 91 aG~Gg~-~i~~Il~~~~~~L~~~~~lVlq-~~---~~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~~~ 158 (225)
T 3kr9_A 91 AGMGGR-LIARILEEGLGKLANVERLILQ-PN---NREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAG 158 (225)
T ss_dssp EEECHH-HHHHHHHHTGGGCTTCCEEEEE-ES---SCHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEES
T ss_pred cCCChH-HHHHHHHHHHHHhCCCCEEEEE-CC---CCHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence 544331 1467889999999999997753 32 245667777777777766653 445555555555544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=98.97 Aligned_cols=86 Identities=19% Similarity=0.245 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCC-C-CCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNL-P-FFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~~~~~fD~V~~~ 155 (229)
.++.+|||||||+|..+..++.. +..+|+++|+++. .+.++.+|+.+. + ..+++||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 47889999999999999999986 4569999999975 356889998763 4 346899999985
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
.. ......+++++.+.|||||.+++
T Consensus 150 ~~--~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 150 AA--KAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp TT--SSSHHHHHHHHGGGEEEEEEEEE
T ss_pred Cc--HHHHHHHHHHHHHhcCCCeEEEE
Confidence 32 22567899999999999999875
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=99.45 Aligned_cols=86 Identities=9% Similarity=0.131 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC-----------------CCeEEEcCCCCC-C-CCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS-----------------LPLVSRADPHNL-P-FFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~-----------------~~~~~~~d~~~~-~-~~~~~fD~V~ 153 (229)
+++.+|||||||+|..+..+++. +.++|+++|+++. .+.++++|+.+. + +++++||+|+
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 55 NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 34559999999999999999885 3569999999976 245778887663 2 3468999999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
+... ..+...+++++.+.|||||.+++
T Consensus 135 ~d~~--~~~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 135 GQVS--PMDLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp ECCC--TTTHHHHHHHHHHHEEEEEEEEE
T ss_pred EcCc--HHHHHHHHHHHHHHcCCCcEEEE
Confidence 8632 12467789999999999999775
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.9e-11 Score=102.35 Aligned_cols=112 Identities=9% Similarity=0.020 Sum_probs=80.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..+++.+|||+|||+|..+..+++. +.++|+|+|+++. .+.++++|+.+++..+++||+|+++
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d 194 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 194 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence 3478899999999999999999986 3469999999976 2458888988876556789999985
Q ss_pred cc------hhh-------h----------CHHHHHHHHHhccccCcEEEEEeecCC-cccHHHHHHHHhcCce
Q 027039 156 HL------AEA-------L----------FPSRFVGEMERTVKIGGVCMVLMEECA-GREIKQIVELFRTSRF 204 (229)
Q Consensus 156 ~~------~~~-------~----------~~~~~l~~~~~~LkpgG~lil~~~~~~-~~~~~~l~~l~~~~~~ 204 (229)
.- .+. . ...++++++.+.|||||++++.+-... .+....+..++++.++
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~ 267 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDV 267 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSE
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCC
Confidence 21 110 0 115889999999999999987664432 2233334555565554
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=100.89 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=91.5
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCC-CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
..++.+|||+|||+|.++..++..+ .++++|+|+++. .+.++++|+.++++++++||+|++|-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 4789999999999999999999984 359999999976 35699999999998889999999972
Q ss_pred chh-------hh-C-HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 157 LAE-------AL-F-PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 157 ~~~-------~~-~-~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
-.. .. . ..++++++.++| ||.+++++.. ...+.+.++..++...+......+.....+++.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~-----~~~~~~~~~~~G~~~~~~~~~~nG~l~~~~~~~ 364 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE-----KKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVV 364 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC-----HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC-----HHHHHHHHHHcCCEEEEEEEEEcCCEEEEEEec
Confidence 211 11 1 267888899988 5555555542 355667888888887777655444444445444
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-11 Score=100.17 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC---CCCeEEEecCCCC-----------C-----------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDS-----------L----------------------------- 131 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~---g~~~v~~vD~s~~-----------~----------------------------- 131 (229)
.++.+|||+|||+|.++..++.. +..+|+|+|+++. .
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 46789999999999999999875 3358999999965 1
Q ss_pred ----Ce-------------EEEcCCCCCCC-----CCCceeEEEcccchhhh----------CHHHHHHHHHhccccCcE
Q 027039 132 ----PL-------------VSRADPHNLPF-----FDEAFDVAFTAHLAEAL----------FPSRFVGEMERTVKIGGV 179 (229)
Q Consensus 132 ----~~-------------~~~~d~~~~~~-----~~~~fD~V~~~~~~~~~----------~~~~~l~~~~~~LkpgG~ 179 (229)
+. ++++|+.+... .+++||+|+++...... ....+++++.++|||||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 34 88889877421 34589999998432221 246899999999999999
Q ss_pred EEEEeec
Q 027039 180 CMVLMEE 186 (229)
Q Consensus 180 lil~~~~ 186 (229)
+++ +..
T Consensus 210 l~~-~~~ 215 (250)
T 1o9g_A 210 IAV-TDR 215 (250)
T ss_dssp EEE-EES
T ss_pred EEE-eCc
Confidence 997 544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=93.96 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCCC-C-CC---CCceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHNL-P-FF---DEAFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~~---~~~fD~ 151 (229)
.++.+|||||||+|..+..+++. + .++|+++|+++. .+.++++|+.+. + +. .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 57889999999999999999988 3 569999999975 256888887652 1 11 267999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|++... ......+++++.++|||||.+++.
T Consensus 137 v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 137 IFIDAD--KQNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp EEECSC--GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEEcCC--cHHHHHHHHHHHHhcCCCcEEEEe
Confidence 998643 224678999999999999986653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-11 Score=95.89 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC--------------------CCeEEEcCCCCCCCCCCceeE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS--------------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~--------------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
++++.+|||+|||+|..+..+++. + ..+|+++|+++. .+.++.+|....+..+++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 578999999999999999999987 4 259999999865 245788888766555678999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|++....++ +++++.+.|||||.+++.+..
T Consensus 155 i~~~~~~~~-----~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPV-----VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSS-----CCHHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHH-----HHHHHHHhcCCCcEEEEEEec
Confidence 998765443 346789999999999987765
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-11 Score=96.65 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC----------------CeEEEcCCCCC-CCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHNL-PFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~----------------~~~~~~d~~~~-~~~~~~fD~V~~~ 155 (229)
.++.+|||||||+|..+..+++. + .++|+++|+++.+ +.++++|+.+. +..++ ||+|++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 46789999999999999999987 3 5699999999762 45888888653 54456 9999986
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
. ...+...+++++.++|||||.+++
T Consensus 134 ~--~~~~~~~~l~~~~~~LkpgG~lv~ 158 (210)
T 3c3p_A 134 C--DVFNGADVLERMNRCLAKNALLIA 158 (210)
T ss_dssp T--TTSCHHHHHHHHGGGEEEEEEEEE
T ss_pred C--ChhhhHHHHHHHHHhcCCCeEEEE
Confidence 3 123678899999999999999875
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=98.88 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCC-CCC--CCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNL-PFF--DEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~~~--~~~fD~V~~ 154 (229)
.++.+|||+|||+|..+..+++. +..+|+++|+++. .+.++.+|+.+. +.. +++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 47889999999999999999987 4569999999875 256788888763 432 578999998
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+.... +..++++++.+.|||||.+++.
T Consensus 133 ~~~~~--~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 133 DAAKG--QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp EGGGS--CHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCHH--HHHHHHHHHHHHcCCCeEEEEE
Confidence 65432 6788999999999999998864
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=95.25 Aligned_cols=128 Identities=7% Similarity=-0.007 Sum_probs=89.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCC-CCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIG-VADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g-~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.++++.+|||||||+|..+..++..+ ..+|+|+|+++. .+.+..+|..+...++.+||+|+..
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 18 YITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIA 97 (244)
T ss_dssp TCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred hCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEe
Confidence 45788999999999999999999984 568999999987 2568889988765444469998865
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeee--eeecCCeeEEEEEEec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAAN--VTVNGSNMTRILMRRT 225 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 225 (229)
.+.. .-..+++.+..+.|+++|++++.- .. ....+.+.+...+|.-+.+ +.-.+.-..++...++
T Consensus 98 gmGg-~lI~~IL~~~~~~L~~~~~lIlq~-~~---~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~ 164 (244)
T 3gnl_A 98 GMGG-TLIRTILEEGAAKLAGVTKLILQP-NI---AAWQLREWSEQNNWLITSEAILREDNKVYEIMVLAPS 164 (244)
T ss_dssp EECH-HHHHHHHHHTGGGGTTCCEEEEEE-SS---CHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCch-HHHHHHHHHHHHHhCCCCEEEEEc-CC---ChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence 4333 123567888899999999977443 32 3455666666555554443 3445555555554544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=101.00 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=78.2
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCCC----CCCceeEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLPF----FDEAFDVA 152 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~----~~~~fD~V 152 (229)
.+++.+|||+|||+|..+..+++. +.++|+|+|+++. .+.++++|+.+++. .+++||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 468899999999999999999985 4479999999976 34577888877653 26789999
Q ss_pred Ecccch------------------hh-hCHHHHHHHHHhccccCcEEEEEeecCC-cccHHHHHHHHh
Q 027039 153 FTAHLA------------------EA-LFPSRFVGEMERTVKIGGVCMVLMEECA-GREIKQIVELFR 200 (229)
Q Consensus 153 ~~~~~~------------------~~-~~~~~~l~~~~~~LkpgG~lil~~~~~~-~~~~~~l~~l~~ 200 (229)
+++.-. .. ....++++++.+.|||||.+++.+.... .+....+..+.+
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~ 228 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQ 228 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHH
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHH
Confidence 987111 01 1357899999999999999887665432 223333444444
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=97.45 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
..+.+|||||||+|..+..+++. +..+|+++|+++. .+.++.+|+.+ ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999988 6679999999865 24477777655 344467899999
Q ss_pred cccchhhh------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHLAEAL------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~~~~~------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++...... ...++++++.+.|||||.+++.+..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 86332201 2278999999999999998876543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=100.62 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=74.4
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+.++.+|||+|||+|.++..++.. +.++|+|+|+++. .+.++.+|+.+.+. +++||+|+++.
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECC
Confidence 3578999999999999999999988 5569999999975 34588999988743 67899999975
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.. ...+++.++.+.|||||.+++....
T Consensus 195 p~---~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 195 VH---KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp CS---SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred cc---cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 43 4677899999999999998866554
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-11 Score=99.43 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=86.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.++|.+|||+|||+|.++..++..|..+|+++|+++. .+.++++|+.+++. .+.||.|+++..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC
Confidence 3899999999999999999999888779999999987 24588899988763 578999998744
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEe--ecC--CcccHHHHHHHHhcC----ceeEeeeeeecCCeeE
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLM--EEC--AGREIKQIVELFRTS----RFVDAANVTVNGSNMT 218 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~--~~~--~~~~~~~l~~l~~~~----~~~~~~~~~~~~~~~~ 218 (229)
.. ..+++..+.+.|||||.+.+.. .+. .....+.+.+..+.. +...++.++.++....
T Consensus 202 ~~---~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP~~~ 267 (278)
T 3k6r_A 202 VR---THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVW 267 (278)
T ss_dssp SS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEE
T ss_pred Cc---HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEEEEEEEeECcCcc
Confidence 33 3456777889999999876542 221 122344455554433 3445556666655433
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.6e-11 Score=95.79 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=70.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CC------CeEEEecCCCC--------------------CCeEEEcCCCCCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GV------ADVTGVELMDS--------------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~------~~v~~vD~s~~--------------------~~~~~~~d~~~~~~~ 145 (229)
.++++.+|||||||+|..+..+++. +. ++|+++|+++. .+.++.+|..+ +++
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~ 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC
Confidence 3578899999999999999999886 42 59999999865 25578888876 444
Q ss_pred C-CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 146 D-EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 ~-~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+ ++||+|++....++. .+++.+.|||||++++.+..
T Consensus 160 ~~~~fD~I~~~~~~~~~-----~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 160 PNAPYNAIHVGAAAPDT-----PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GGCSEEEEEECSCBSSC-----CHHHHHTEEEEEEEEEEESC
T ss_pred cCCCccEEEECCchHHH-----HHHHHHHhcCCCEEEEEEec
Confidence 4 789999998655543 36789999999999988765
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.1e-11 Score=101.19 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------------CeEEEcCCCCCCC----CCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHNLPF----FDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-----------------~~~~~~d~~~~~~----~~~~fD~V~ 153 (229)
.++.+|||+|||+|.++..++..|. +|+++|+++.+ +.++++|+.+... .+++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 5678999999999999999999887 99999999761 5678888776421 156899999
Q ss_pred ccc----------chhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh
Q 027039 154 TAH----------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR 200 (229)
Q Consensus 154 ~~~----------~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~ 200 (229)
++- +.... +..+++.++.++|||||.+++........+...+.++..
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~ 288 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMR 288 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHH
Confidence 951 11222 467899999999999999887776655444444444433
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=93.75 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCCC-C-CC----CCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHNL-P-FF----DEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~~----~~~fD 150 (229)
.++.+|||||||+|..+..+++. + ..+|+++|+++. .+.++++|+.+. + +. .++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 46789999999999999999987 3 569999999975 256888887552 2 11 17899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+|++... ......+++++.++|||||.+++.
T Consensus 143 ~v~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 143 LIYIDAD--KANTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp EEEECSC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCC--HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9997542 225778999999999999998753
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-11 Score=101.43 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=71.0
Q ss_pred CeEEEEcCCCChhhHHHHh-CCCCeEEEecCCCC---------------CCeEEEcCCCCC--CCCCCceeEEEcccch-
Q 027039 98 SKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDS---------------LPLVSRADPHNL--PFFDEAFDVAFTAHLA- 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~-~g~~~v~~vD~s~~---------------~~~~~~~d~~~~--~~~~~~fD~V~~~~~~- 158 (229)
.+|||||||+|..+..+++ .+..+++++|+++. .+.++.+|+.+. .+++++||+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999998 44459999999976 245778887663 3456899999996322
Q ss_pred ----hhhCHHHHHHHHHhccccCcEEEEEeecC
Q 027039 159 ----EALFPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 159 ----~~~~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
.++...++++++.+.|||||.+++.....
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 23344789999999999999998877643
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-10 Score=98.74 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCC-CeEEEecCCCC---------------CCeEEEcCCCC-CCC-CCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGV-ADVTGVELMDS---------------LPLVSRADPHN-LPF-FDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~-~~v~~vD~s~~---------------~~~~~~~d~~~-~~~-~~~~fD~V~~~~ 156 (229)
.++.+|||+| |+|.++..++..+. .+|+++|+++. .+.++++|+.+ +|. .+++||+|+++.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 4678999999 99999999988743 69999999975 25689999988 664 457899999984
Q ss_pred chhhhCHHHHHHHHHhccccCcEE-EEEeecCCcccH---HHHHHHHh-cCce
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVC-MVLMEECAGREI---KQIVELFR-TSRF 204 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~l-il~~~~~~~~~~---~~l~~l~~-~~~~ 204 (229)
.........+++++.++|||||++ ++.+.. ...+. ..+.+.+. ..++
T Consensus 250 p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~ 301 (373)
T 2qm3_A 250 PETLEAIRAFVGRGIATLKGPRCAGYFGITR-RESSLDKWREIQKLLLNEFNV 301 (373)
T ss_dssp CSSHHHHHHHHHHHHHTBCSTTCEEEEEECT-TTCCHHHHHHHHHHHHHTSCC
T ss_pred CCchHHHHHHHHHHHHHcccCCeEEEEEEec-CcCCHHHHHHHHHHHHHhcCc
Confidence 332222578999999999999954 444432 12233 45566665 5544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=97.07 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
.++.+|||||||+|..+..+++. |..+|+++|+++. .++++.+|+.+ ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 45789999999999999999988 7779999999865 23477778765 333467999999
Q ss_pred cccchhh-----hCHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHLAEA-----LFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~~~~-----~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++..... +...++++++.+.|||||.+++....
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9743321 12378999999999999998876543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.8e-11 Score=94.81 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=71.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-----CCeEEEecCCCC--------------------CCeEEEcCCCCCC---
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-----VADVTGVELMDS--------------------LPLVSRADPHNLP--- 143 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-----~~~v~~vD~s~~--------------------~~~~~~~d~~~~~--- 143 (229)
.++++.+|||||||+|..+..+++. + ..+|+++|+++. .+.++.+|..+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 3578899999999999999999887 3 259999999864 2568888888754
Q ss_pred -CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 144 -FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 144 -~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..+++||+|++....++ +++++.+.|||||++++.+..
T Consensus 157 ~~~~~~fD~I~~~~~~~~-----~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASE-----LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBBSS-----CCHHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHH-----HHHHHHHhcCCCcEEEEEEcc
Confidence 45678999999865543 347889999999999988875
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.8e-11 Score=98.03 Aligned_cols=108 Identities=9% Similarity=0.077 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCC--ChhhHHHHhC--CCCeEEEecCCCCC---------------CeEEEcCCCCCC------CCCCcee
Q 027039 96 NHSKVLCVSAGA--GHEVMAFNSI--GVADVTGVELMDSL---------------PLVSRADPHNLP------FFDEAFD 150 (229)
Q Consensus 96 ~~~~vLDiG~G~--G~~~~~l~~~--g~~~v~~vD~s~~~---------------~~~~~~d~~~~~------~~~~~fD 150 (229)
...++||||||. +..+..+++. +..+|+++|.|+.+ +.++++|+.+.+ ...+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 346899999997 3344555443 55699999999862 458999998852 1124455
Q ss_pred -----EEEcccchhhh-C---HHHHHHHHHhccccCcEEEEEeecCCc--ccHHHHHHHHhcCc
Q 027039 151 -----VAFTAHLAEAL-F---PSRFVGEMERTVKIGGVCMVLMEECAG--REIKQIVELFRTSR 203 (229)
Q Consensus 151 -----~V~~~~~~~~~-~---~~~~l~~~~~~LkpgG~lil~~~~~~~--~~~~~l~~l~~~~~ 203 (229)
.|+++.+.|++ + |..+++++.+.|+|||.+++..-..+. ...+.+.+.++..+
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g 221 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARN 221 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcC
Confidence 57888888888 4 678999999999999999877655432 23444555555443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-10 Score=95.31 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------------CCeEEEcCCCC-CCCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------------LPLVSRADPHN-LPFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------------~~~~~~~d~~~-~~~~~~~fD~V 152 (229)
.++.+|||||||+|..+..+++. +..+++++|+++. .+.++.+|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 46789999999999999999988 5679999999865 13467777765 33346899999
Q ss_pred Ecccchhh--------hCHHHHHHHHHhccccCcEEEEEeecCC---cccHHHHHHHHh
Q 027039 153 FTAHLAEA--------LFPSRFVGEMERTVKIGGVCMVLMEECA---GREIKQIVELFR 200 (229)
Q Consensus 153 ~~~~~~~~--------~~~~~~l~~~~~~LkpgG~lil~~~~~~---~~~~~~l~~l~~ 200 (229)
+++...+. +...++++++.+.|||||.+++...... ......+.+.++
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~ 214 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR 214 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHH
Confidence 99744322 1247899999999999999987754321 233444444444
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-10 Score=87.42 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcccchhhhC-
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALF- 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~- 162 (229)
..++.+|||+|||+|.++..++..|..+|+|+|+++. .+.++++|+.+++ ++||+|+++...++..
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 3578899999999999999999887768999999976 3679999998865 6899999986555442
Q ss_pred --HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcC
Q 027039 163 --PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTS 202 (229)
Q Consensus 163 --~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~ 202 (229)
..++++++.+.+ |+ ++++... .....+.+.+...
T Consensus 126 ~~~~~~l~~~~~~~--g~-~~~~~~~---~~~~~~~~~~~~~ 161 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MW-IYSIGNA---KARDFLRREFSAR 161 (200)
T ss_dssp --CHHHHHHHHHHE--EE-EEEEEEG---GGHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhc--Cc-EEEEEcC---chHHHHHHHHHHC
Confidence 257888888888 44 4444432 2344555555544
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.9e-10 Score=96.50 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=70.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
.++.+|||||||+|..+..+++. +..+|+++|+++. .++++.+|+.+ ++..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 46789999999999999999988 6679999999865 23467777655 233357899999
Q ss_pred cccch-----hhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++... ..+...++++++.+.|||||.+++....
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 87421 1112378999999999999999876544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-09 Score=94.88 Aligned_cols=115 Identities=19% Similarity=0.147 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCC------eEEEcCCCCCCCCCCceeEEEcc--cch------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP------LVSRADPHNLPFFDEAFDVAFTA--HLA------ 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~------~~~~~d~~~~~~~~~~fD~V~~~--~~~------ 158 (229)
.++.+|||+|||+|.++..+++. +..+++|+|+++.++ .++++|..+.+. +++||+|++| +..
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~ 116 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASK 116 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCc-cCCCCEEEECcCccCcccccc
Confidence 45679999999999999999875 446999999999864 477888887653 5789999997 110
Q ss_pred ------hhh----------------CHHHHHHHHHhccccCcEEEEEeecC--CcccHHHHHHHHhcCceeEeeee
Q 027039 159 ------EAL----------------FPSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 159 ------~~~----------------~~~~~l~~~~~~LkpgG~lil~~~~~--~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
... ....+++.+.+.|||||.++++++.. .......+.+.+...+...+..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l 192 (421)
T 2ih2_A 117 YPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYL 192 (421)
T ss_dssp CSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEE
T ss_pred cccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCCeEEEEC
Confidence 100 01267899999999999999998763 12344566666554444444443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-09 Score=88.21 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=89.3
Q ss_pred HhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------------eEEEcCCC
Q 027039 75 KQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPH 140 (229)
Q Consensus 75 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------------~~~~~d~~ 140 (229)
+.+...+..++....+. .++.+|||||||.|.++..+. +...++|+|+++.++ .+.++|..
T Consensus 87 rerLp~ld~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~ 161 (253)
T 3frh_A 87 KERLAELDTLYDFIFSA---ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVL 161 (253)
T ss_dssp HHHGGGHHHHHHHHTSS---CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred HHHhhhHHHHHHHHhcC---CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecc
Confidence 44455566666655443 678899999999999999988 566999999998843 37888888
Q ss_pred CCCCCCCceeEEEcccchhhh---CHHHHHHHHHhccccCcEEEEEeecCC--------cccHHHHHHHHhcCceeEeee
Q 027039 141 NLPFFDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLMEECA--------GREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 141 ~~~~~~~~fD~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~~~--------~~~~~~l~~l~~~~~~~~~~~ 209 (229)
..+.+ ++||+|++.-+.+++ .....+ ++.+.|+++|.++ .++.+. ....+..-+.+=..+...+..
T Consensus 162 ~~~~~-~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvV-sfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~ 238 (253)
T 3frh_A 162 CAPPA-EAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAV-SFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDK 238 (253)
T ss_dssp TSCCC-CBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEE-EEECC-----------CHHHHHHHHSCTTEEEEEE
T ss_pred cCCCC-CCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEE-EcChHHhcCCCcchhhHHHHHHHHHhhccchhhhh
Confidence 87754 599999998666655 333344 8888999998866 666321 112223333333555555555
Q ss_pred eeecC
Q 027039 210 VTVNG 214 (229)
Q Consensus 210 ~~~~~ 214 (229)
++..+
T Consensus 239 ~~~~n 243 (253)
T 3frh_A 239 KTIGT 243 (253)
T ss_dssp EEETT
T ss_pred eecCc
Confidence 55543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-09 Score=87.34 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCC---CCC---CCceeEE
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNL---PFF---DEAFDVA 152 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~---~~~---~~~fD~V 152 (229)
++.+|||+|||+|..+..++.. +..+|+|+|+++.+ +.++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 6789999999999999998876 34599999999762 56889997762 444 3689999
Q ss_pred Ecccchhh-------h--------CH-HHHHHHHHh--------------------ccccCcEEEEEeecCCcccHHHHH
Q 027039 153 FTAHLAEA-------L--------FP-SRFVGEMER--------------------TVKIGGVCMVLMEECAGREIKQIV 196 (229)
Q Consensus 153 ~~~~~~~~-------~--------~~-~~~l~~~~~--------------------~LkpgG~lil~~~~~~~~~~~~l~ 196 (229)
+++..... . .+ ..++.++.+ .++++|.+...... .....++.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~ 222 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGK--KCSLAPLK 222 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESS--TTSHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCC--hhHHHHHH
Confidence 99811110 0 01 123334444 45555554433222 33446788
Q ss_pred HHHhcCceeEeeeeee-cCCeeEEEE
Q 027039 197 ELFRTSRFVDAANVTV-NGSNMTRIL 221 (229)
Q Consensus 197 ~l~~~~~~~~~~~~~~-~~~~~~~~~ 221 (229)
+++++.+|..++.... .|...+.++
T Consensus 223 ~~l~~~Gf~~v~~~~~~~g~~~~~~~ 248 (254)
T 2h00_A 223 EELRIQGVPKVTYTEFCQGRTMRWAL 248 (254)
T ss_dssp HHHHHTTCSEEEEEEEEETTEEEEEE
T ss_pred HHHHHcCCCceEEEEEecCCceEEEE
Confidence 8899888877665433 344444444
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=96.04 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCCC-C-C-----CCCce
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHNL-P-F-----FDEAF 149 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~f 149 (229)
.++.+|||||||+|..+..+++. + .++++++|+++. .+.++.+|+.+. + + ++++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 46789999999999999999886 3 569999999986 245788887653 3 1 15789
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+|++... ..+...+++++.++|||||.+++.
T Consensus 158 D~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 158 DFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp SEEEECSC--STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred EEEEEcCc--hHHHHHHHHHHHHhCCCCeEEEEe
Confidence 99998643 225788999999999999998753
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-10 Score=92.10 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..+.+|||||||+|..+..+++.+ .+|+++|+++.+ +.++.+|+.+.. ++||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 456899999999999999988877 799999998652 335566665543 789999986
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
. .+|..+++++.+.|||||.+++....
T Consensus 147 ~----~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 147 Q----EPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp S----CCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred C----CChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 2 24667999999999999998876544
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.4e-10 Score=97.90 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCC--CCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLP--FFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~--~~~~~fD~V~~~~ 156 (229)
.+++.+|||+|||+|..+..+++. +.++|+|+|+++.. +.++.+|+.+.+ +++++||+|+++.
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 478899999999999999999987 44699999999873 458888988876 5568999999741
Q ss_pred ------chhhh-C----------------HHHHHHHHHhccccCcEEEEEeecCC-cccHHHHHHHHh
Q 027039 157 ------LAEAL-F----------------PSRFVGEMERTVKIGGVCMVLMEECA-GREIKQIVELFR 200 (229)
Q Consensus 157 ------~~~~~-~----------------~~~~l~~~~~~LkpgG~lil~~~~~~-~~~~~~l~~l~~ 200 (229)
+.++. + ..+++.++.+.|||||++++.+.... .+....+..++.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~ 391 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQ 391 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHH
Confidence 11111 1 14789999999999999887664322 223333444444
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-10 Score=99.46 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC---------------CCeEEEcCCCCCC--CCCCceeEEEc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS---------------LPLVSRADPHNLP--FFDEAFDVAFT 154 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~ 154 (229)
.+++.+|||+|||+|..+..+++. + .++|+++|+++. .+.++++|+.+.+ +++++||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 478899999999999999999986 3 369999999976 3558888988876 55578999997
Q ss_pred c------cchhhh-C----------------HHHHHHHHHhccccCcEEEEEeecC
Q 027039 155 A------HLAEAL-F----------------PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 155 ~------~~~~~~-~----------------~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
+ .+.+.. + ..+++.++.+.|||||.+++.+...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 4 111110 1 1578999999999999988766543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.2e-10 Score=100.64 Aligned_cols=91 Identities=12% Similarity=-0.016 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------------eEEEcCCCCC-CCCCCceeEEEcccch-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNL-PFFDEAFDVAFTAHLA- 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------------~~~~~d~~~~-~~~~~~fD~V~~~~~~- 158 (229)
+++.+|||+|||+|.++..++..|. .|+++|+|+.++ .+.++|+.+. +..++.||+|+++.-.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 5699999999999999999999987 599999998732 3667787663 2223449999986211
Q ss_pred --------hhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 159 --------EAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 159 --------~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
... ...+++..+.++|||||.+++....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 111 3468899999999999998855544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-10 Score=92.42 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCC----CCCCC--Ccee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHN----LPFFD--EAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~----~~~~~--~~fD 150 (229)
.++.+|||||||+|..+..++.. + .++++++|+++. .+.++.+|+.+ ++..+ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 46789999999999999999987 3 469999999976 24577888644 23333 7899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+|++... ..+...+++++.++|||||.+++.
T Consensus 151 ~V~~d~~--~~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 151 LIFIDAD--KRNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp EEEECSC--GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEECCC--HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 9998643 124678999999999999998764
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.7e-10 Score=92.49 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------------------CeEEEcCCCCC-CCCCCc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------------------PLVSRADPHNL-PFFDEA 148 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------------------~~~~~~d~~~~-~~~~~~ 148 (229)
.++.+|||||||+|..+..+++.+..+++++|+++.+ +.++.+|+.+. +. +++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 4678999999999999999998876799999998542 34566665442 22 578
Q ss_pred eeEEEcccchh-----hhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 149 FDVAFTAHLAE-----ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 149 fD~V~~~~~~~-----~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
||+|+++.... ++...++++++.+.|||||.+++....
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 99999974421 112378899999999999999877544
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-10 Score=97.57 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCCC--CCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHNL--PFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~~--~~~~~~fD~V 152 (229)
.++.+|||||||+|..+..+++. +..+|+++|+++. .+.++.+|+.+. .+++++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 56789999999999999999988 5679999999865 245778887653 2346799999
Q ss_pred Ecccch-----hhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 153 FTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 153 ~~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+++... ..+...++++++.++|||||.+++...
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 986431 112247899999999999999886543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=86.59 Aligned_cols=104 Identities=14% Similarity=0.050 Sum_probs=74.7
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
..++.+|||+|||+|.++..++..+..+++|+|+++. .+.++++|+.+++ ++||+|+++...+
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 3578899999999999999999987668999999976 2568889988864 4899999984332
Q ss_pred hh---CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 160 AL---FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 160 ~~---~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
.. ...++++++.+.+ ||.+++.+.. ......+.+.+...++
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~~~~--~~~~~~~~~~l~~~g~ 167 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIHLAK--PEVRRFIEKFSWEHGF 167 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEEECC--HHHHHHHHHHHHHTTE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEEeCC--cCCHHHHHHHHHHCCC
Confidence 22 2356788888888 5554433222 3344555666665553
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=89.35 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=77.4
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC------C-------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------L-------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~------~-------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
+...++++.+|||+|||+|.+++..++. +...++|+|+... + +...+.+++...+++++||+|+|.
T Consensus 68 ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD 147 (277)
T 3evf_A 68 ERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCD 147 (277)
T ss_dssp HTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred HhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEec
Confidence 3356789999999999999999988876 6667887777632 1 123455555566778899999997
Q ss_pred cchh----hhCH---HHHHHHHHhccccC-cEEEEEeecCCcccHHH----HHHHHhcCceeEe
Q 027039 156 HLAE----ALFP---SRFVGEMERTVKIG-GVCMVLMEECAGREIKQ----IVELFRTSRFVDA 207 (229)
Q Consensus 156 ~~~~----~~~~---~~~l~~~~~~Lkpg-G~lil~~~~~~~~~~~~----l~~l~~~~~~~~~ 207 (229)
-... ..+- ..+++.+.++|||| |.|++=+-.....+..+ +...|++....+.
T Consensus 148 ~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KP 211 (277)
T 3evf_A 148 IGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNP 211 (277)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCT
T ss_pred CccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEeC
Confidence 3222 1121 23578889999999 99876444421333333 4444555444444
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.5e-10 Score=94.87 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.++.+|||+|||+|.++.. +. +..+|+|+|+++. .+.++++|+.+.. ++||+|+++--.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence 6889999999999999999 77 5669999999975 3568889988865 789999996322
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh---cCceeEeeeeee
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR---TSRFVDAANVTV 212 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~ 212 (229)
. ..+++.++.+.|+|||.+++..-... ...+.+.+. ......++.+..
T Consensus 269 ~---~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~l~~~~~~~i~~~~~v~~ 319 (336)
T 2yx1_A 269 F---AHKFIDKALDIVEEGGVIHYYTIGKD---FDKAIKLFEKKCDCEVLEKRIVKS 319 (336)
T ss_dssp T---GGGGHHHHHHHEEEEEEEEEEEEESS---SHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred h---HHHHHHHHHHHcCCCCEEEEEEeecC---chHHHHHHHHhcCCcEEEEEEEec
Confidence 2 23788999999999999886554433 333444444 233334455544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-10 Score=91.11 Aligned_cols=87 Identities=17% Similarity=0.120 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCCC-C-CCC----Ccee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHNL-P-FFD----EAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~~~----~~fD 150 (229)
.++.+|||||||+|..+..+++. + ..+++++|+++. .+.++++|+.+. + +.+ ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 57889999999999999999986 3 569999999986 245777877542 1 111 6899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+|++... ......+++++.+.|||||.+++.
T Consensus 148 ~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 148 VAVVDAD--KENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp EEEECSC--STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCC--HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9998643 224678999999999999998763
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-09 Score=88.09 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCCC----------------CeEEEcCCCC-CC------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDSL----------------PLVSRADPHN-LP------------ 143 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~~----------------~~~~~~d~~~-~~------------ 143 (229)
.++.+|||||||+|..+..+++. + .++|+++|+++.+ +.++.+|+.+ ++
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 57889999999999999999987 3 5699999999762 5577887654 22
Q ss_pred --CCC--CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 144 --FFD--EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 144 --~~~--~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
|++ ++||+|++.... .....+++++.+.|||||.+++..
T Consensus 139 ~~f~~~~~~fD~I~~~~~~--~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK--ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG--GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCCH--HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 233 789999987432 245688999999999999988654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-09 Score=91.25 Aligned_cols=91 Identities=20% Similarity=0.285 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCCC-CCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHNL-PFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~~-~~~~~~fD~V~ 153 (229)
.++.+|||||||+|..+..+++. +..+++++|+++. .++++.+|+.+. +..+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 46789999999999999999987 5679999999865 234677777652 22367899999
Q ss_pred cccchhh-----hCHHHHHHHHHhccccCcEEEEEee
Q 027039 154 TAHLAEA-----LFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 154 ~~~~~~~-----~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++..... +...++++++.+.|||||.+++...
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 9633221 1226899999999999999887654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.4e-10 Score=95.46 Aligned_cols=91 Identities=24% Similarity=0.260 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
.++.+|||||||+|..+..+++. +..+++++|+++. .++++.+|+.+ ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 56789999999999999999988 5679999999865 24577777765 344468999999
Q ss_pred cccchhh-----hCHHHHHHHHHhccccCcEEEEEee
Q 027039 154 TAHLAEA-----LFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 154 ~~~~~~~-----~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++..... +...++++++.+.|||||.+++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 8643321 1235789999999999999887653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-11 Score=97.73 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=67.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------CeEEEcCCCCCCCCC-CceeEEEccc--
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFD-EAFDVAFTAH-- 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~-~~fD~V~~~~-- 156 (229)
.+.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+ +.++++|+.++++++ ++| .|++|-
T Consensus 26 ~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py 103 (245)
T 1yub_A 26 NLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPY 103 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCS
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCc
Confidence 45688899999999999999999987 599999999873 347789999888764 689 677761
Q ss_pred ---------chhhh-CHHHHH----HHHHhccccCcEEEEEee
Q 027039 157 ---------LAEAL-FPSRFV----GEMERTVKIGGVCMVLME 185 (229)
Q Consensus 157 ---------~~~~~-~~~~~l----~~~~~~LkpgG~lil~~~ 185 (229)
+..|. .+...+ +.+.++|||||.+.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 104 HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 11111 222334 668999999998765543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.7e-10 Score=99.13 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCCC-CCCceeEEEcc--
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLPF-FDEAFDVAFTA-- 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~-~~~~fD~V~~~-- 155 (229)
++.+|||+|||+|..+..+++. +.+.|+|+|+++. .+.++++|+.+++. .+++||.|+++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 8899999999999999999986 3469999999976 34578889888653 46789999984
Q ss_pred ----cchhhh-----------------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 ----HLAEAL-----------------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ----~~~~~~-----------------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+.... ...+++.++.++|||||+++..+-.
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 111100 1246899999999999998876654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-10 Score=92.28 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC----------------CCeEEEcCCCCC-C-C-----CCCce
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS----------------LPLVSRADPHNL-P-F-----FDEAF 149 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-~-----~~~~f 149 (229)
.++.+|||||||+|..+..+++. + .++++++|+++. .+.++.+|+.+. + + ++++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 56789999999999999999886 3 569999999976 245888887653 2 2 25789
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+|++... ......+++++.+.|||||.+++-
T Consensus 149 D~I~~d~~--~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 149 DFGFVDAD--KPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp EEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99998632 224678999999999999997754
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.98 E-value=6.1e-10 Score=95.00 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------CeEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------~~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
.++.+|||||||+|..+..+++. +..+|+++|+++.+ ++++.+|+.+ ++..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45689999999999999999988 56799999998652 3466667654 233467899999
Q ss_pred cccchhhh-----CHHHHHHHHHhccccCcEEEEEee
Q 027039 154 TAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 154 ~~~~~~~~-----~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
++...... ...++++++.+.|||||.+++...
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 86432211 126899999999999999887653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-10 Score=98.62 Aligned_cols=92 Identities=17% Similarity=0.046 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCC----CCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPF----FDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~----~~~~fD~V~~ 154 (229)
+++.+|||+|||+|.++..++..|..+|+|+|+++. .+.++.+|+.+... .+++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 488999999999999999999987779999999976 24588888876421 2578999999
Q ss_pred cc---------chhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 155 AH---------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~~---------~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+- +.... ...+++.++.+.|||||.+++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 62 12222 4577899999999999998766544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-10 Score=101.02 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC--------------CeEEEcCCCCCC-CCCCceeEEEccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL--------------PLVSRADPHNLP-FFDEAFDVAFTAH 156 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~--------------~~~~~~d~~~~~-~~~~~fD~V~~~~ 156 (229)
.+++.+|||+|||+|..+..+++. +.+.|+|+|+++.+ +.++++|+.+++ +.+++||+|+++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 468999999999999999999976 34699999999862 457778877765 3468999999641
Q ss_pred ------ch-------hh---------h-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 ------LA-------EA---------L-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ------~~-------~~---------~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+. +. . ...+++.++.+.|||||+++..+-.
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 10 00 0 1267899999999999998876544
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.1e-10 Score=103.33 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCC-CCCCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHN-LPFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~-~~~~~~~fD~V~~~~ 156 (229)
.++.+|||+|||+|.++..++..|..+|+++|+|+. .+.++++|+.+ ++..+++||+|+++-
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 578999999999999999999888778999999976 24588888876 344568999999962
Q ss_pred --c---------hhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 --L---------AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 --~---------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+ .... +..+++.++.++|||||.+++....
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 1 1222 4578899999999999999876655
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-09 Score=96.03 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------------CeEEEcCCCC-CCC---CCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------------PLVSRADPHN-LPF---FDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-----------------~~~~~~d~~~-~~~---~~~~fD~V~ 153 (229)
.++.+|||+|||+|.++..++..|..+|+++|+++.+ +.++++|+.+ ++. ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 5788999999999999999999877799999999872 3578888765 221 245899999
Q ss_pred ccc--c-------hhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAH--L-------AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~--~-------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++- + .... ...+++.++.+.|+|||.+++....
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 861 1 1111 2456788889999999998866654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.3e-10 Score=98.93 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=77.7
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCC-CCCCceeEEEcc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLP-FFDEAFDVAFTA 155 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~-~~~~~fD~V~~~ 155 (229)
.+++.+|||+|||+|..+..+++. +.+.|+++|+++. .+.++++|+.+++ ..+++||.|+++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 478999999999999999999986 4469999999986 2446777877654 235799999985
Q ss_pred cc---hhhh--C------------------HHHHHHHHHhccccCcEEEEEeecCCc-ccHHHHHHHHhcCc
Q 027039 156 HL---AEAL--F------------------PSRFVGEMERTVKIGGVCMVLMEECAG-REIKQIVELFRTSR 203 (229)
Q Consensus 156 ~~---~~~~--~------------------~~~~l~~~~~~LkpgG~lil~~~~~~~-~~~~~l~~l~~~~~ 203 (229)
.- ...+ + ..+++.++.+.|||||.++..+-.... +....+..+.+...
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~ 254 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYP 254 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCC
Confidence 21 0000 1 137899999999999998866654332 23334445555544
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.2e-09 Score=91.36 Aligned_cols=109 Identities=15% Similarity=0.220 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CC-----CeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GV-----ADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~-----~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
.++.+|||+|||+|.++..+++. +. .+++|+|+++.+ ..+.++|.... ..+++||+|++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEE
Confidence 46789999999999999998876 21 589999999772 45888887663 34678999999
Q ss_pred ccchhhh------------------CH-HHHHHHHHhccccCcEEEEEeecC--CcccHHHHHHHHhcCce
Q 027039 155 AHLAEAL------------------FP-SRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFRTSRF 204 (229)
Q Consensus 155 ~~~~~~~------------------~~-~~~l~~~~~~LkpgG~lil~~~~~--~~~~~~~l~~l~~~~~~ 204 (229)
|--..+. +. ..+++++.+.|||||+++++++.. .......+.+.+.....
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH 278 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence 8321111 11 258999999999999999888553 23344566665554433
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-09 Score=89.06 Aligned_cols=60 Identities=22% Similarity=0.146 Sum_probs=51.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+.++.+|||||||+|.++..+++.+. +|+|+|+++. .+.++++|+.+.+++ +||+|+++
T Consensus 25 ~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~n 100 (285)
T 1zq9_A 25 ALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVAN 100 (285)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEE
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEe
Confidence 457889999999999999999999865 9999999975 245889999987764 79999997
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=88.83 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=81.4
Q ss_pred HhhhhhHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe--------------EEEcCC
Q 027039 75 KQQVTSYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSRADP 139 (229)
Q Consensus 75 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~--------------~~~~d~ 139 (229)
+.+...+..++..+.+. +.+..+|||||||+|.++..++.. +..+|+++|+++.+++ +.+.|.
T Consensus 113 reRLp~lD~fY~~i~~~--i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~ 190 (281)
T 3lcv_B 113 RERLPHLDEFYRELFRH--LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADL 190 (281)
T ss_dssp HHHGGGHHHHHHHHGGG--SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred HHHhHhHHHHHHHHHhc--cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeee
Confidence 44455556666555432 266889999999999999999888 7789999999988433 667776
Q ss_pred CCCCCCCCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEEeec
Q 027039 140 HNLPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 140 ~~~~~~~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..-+ +.++||+++++-+.++++. ...+ ++.+.|+|+|.++ ..+.
T Consensus 191 ~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvV-Sfp~ 237 (281)
T 3lcv_B 191 LEDR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVV-TFPT 237 (281)
T ss_dssp TTSC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEE-EEEC
T ss_pred cccC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEE-eccc
Confidence 6654 4688999999988888833 2445 9999999999977 6665
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.2e-09 Score=92.42 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCCCC----CCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNLPF----FDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~~~----~~~~fD~V~ 153 (229)
.++.+|||+|||+|.++..++..|..+|+|+|+++. .+.++.+|+.+... .+++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 578899999999999999999987779999999964 24588888776421 146899999
Q ss_pred ccc---------chhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAH---------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~---------~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++- +.... ...+++.++.+.|||||.+++....
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 972 11111 3568899999999999998866544
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.3e-09 Score=88.48 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=48.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+.++.+|||||||+|.++..+++.+. +|+|+|+++. .+.++++|+.+.++ .+||+|+++-
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~~~D~Vv~n~ 114 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF--PKFDVCTANI 114 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--CCCSEEEEEC
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--ccCCEEEEcC
Confidence 457889999999999999999999864 9999999975 34578889888775 4899999973
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-09 Score=88.03 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=57.2
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEc
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
+.+...+.++.+|||||||+|.++..+++.+ .+|+|+|+++. .+.++++|+.+.++++.+||.|++
T Consensus 42 Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~ 120 (295)
T 3gru_A 42 AVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVA 120 (295)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEE
T ss_pred HHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEE
Confidence 3333456788999999999999999999985 49999999986 346999999999888888999998
Q ss_pred c
Q 027039 155 A 155 (229)
Q Consensus 155 ~ 155 (229)
|
T Consensus 121 N 121 (295)
T 3gru_A 121 N 121 (295)
T ss_dssp E
T ss_pred e
Confidence 7
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-09 Score=94.58 Aligned_cols=90 Identities=18% Similarity=0.087 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCC----CCCceeEEEccc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPF----FDEAFDVAFTAH 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~----~~~~fD~V~~~~ 156 (229)
++.+|||+|||+|.++..++.. ..+|+|+|+++. .+.++++|+.+... .+++||+|+++-
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 7789999999999999999988 569999999976 25688888876421 257899999962
Q ss_pred ---------chhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 157 ---------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 157 ---------~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.... ...+++.++.+.|||||.+++....
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11222 3577899999999999998866654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=84.38 Aligned_cols=117 Identities=9% Similarity=-0.082 Sum_probs=74.1
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----C---------eEEEcCCCCCCCCCCceeEEEccc
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----P---------LVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----~---------~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
...++++.+|||+|||+|.+++..++. +...+.|+|+...+ + .....+.....++.+++|+|+|.-
T Consensus 85 K~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDm 164 (282)
T 3gcz_A 85 RGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDI 164 (282)
T ss_dssp TTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECC
T ss_pred hcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecC
Confidence 346789999999999999999988865 77789999987441 1 112222222335578999999972
Q ss_pred chh-------hhCHHHHHHHHHhccccC--cEEEEEeecCCcccHHH----HHHHHhcCceeEe
Q 027039 157 LAE-------ALFPSRFVGEMERTVKIG--GVCMVLMEECAGREIKQ----IVELFRTSRFVDA 207 (229)
Q Consensus 157 ~~~-------~~~~~~~l~~~~~~Lkpg--G~lil~~~~~~~~~~~~----l~~l~~~~~~~~~ 207 (229)
... +..-..++.-+.++|||| |.|++=+-.....+..+ +...|+.....+.
T Consensus 165 ApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KP 228 (282)
T 3gcz_A 165 GESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVP 228 (282)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCT
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEEcC
Confidence 211 111124577778999999 99776554421233333 4445555444444
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-08 Score=89.37 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--------------CCCeEEEecCCCC-----------------CCeEEEcCCCCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--------------GVADVTGVELMDS-----------------LPLVSRADPHNLP 143 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--------------g~~~v~~vD~s~~-----------------~~~~~~~d~~~~~ 143 (229)
.++.+|||.|||+|.+...+++. ....++|+|+++. ...+.++|....+
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 56789999999999999887753 1248999999875 2357888887765
Q ss_pred CCCCceeEEEcccchhhh---C---------------HHHHHHHHHhccccCcEEEEEeecC---CcccHHHHHH-HHhc
Q 027039 144 FFDEAFDVAFTAHLAEAL---F---------------PSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIVE-LFRT 201 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~---~---------------~~~~l~~~~~~LkpgG~lil~~~~~---~~~~~~~l~~-l~~~ 201 (229)
.. .+||+|++|--.... . ...+++.+.+.|||||+++++++.. .......+.+ ++++
T Consensus 250 ~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~ 328 (445)
T 2okc_A 250 PS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQD 328 (445)
T ss_dssp CS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHH
T ss_pred cc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHhc
Confidence 43 489999998211110 0 1478999999999999999888652 2222344554 5666
Q ss_pred CceeEeeee
Q 027039 202 SRFVDAANV 210 (229)
Q Consensus 202 ~~~~~~~~~ 210 (229)
..+..+..+
T Consensus 329 ~~l~~ii~l 337 (445)
T 2okc_A 329 FNLHTILRL 337 (445)
T ss_dssp EEEEEEEEC
T ss_pred CcEEEEEeC
Confidence 666666554
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.6e-08 Score=86.25 Aligned_cols=113 Identities=13% Similarity=0.161 Sum_probs=74.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCC----CCCCCCceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHN----LPFFDEAFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~----~~~~~~~fD~V~ 153 (229)
...++.+|||+|||+|.++..++..+ .+|+|+|+++. .+.++++|+.+ +++.+++||+|+
T Consensus 283 ~~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 283 DVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp TCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 34678899999999999999999984 59999999975 35699999987 345677999999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHH-HHHHHHh-cCceeEeeeeee
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIK-QIVELFR-TSRFVDAANVTV 212 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~-~l~~l~~-~~~~~~~~~~~~ 212 (229)
++--.... .++++.+.+ ++|++.+++... ..+.. .+..+.+ ..++.++.-++.
T Consensus 362 ~dPPr~g~--~~~~~~l~~-~~p~~ivyvsc~---p~tlard~~~l~~~Gy~~~~~~~~d~ 416 (433)
T 1uwv_A 362 LDPARAGA--AGVMQQIIK-LEPIRIVYVSCN---PATLARDSEALLKAGYTIARLAMLDM 416 (433)
T ss_dssp ECCCTTCC--HHHHHHHHH-HCCSEEEEEESC---HHHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred ECCCCccH--HHHHHHHHh-cCCCeEEEEECC---hHHHHhhHHHHHHCCcEEEEEEEecc
Confidence 96211111 234444443 788887654322 22222 2333332 455555555544
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=88.17 Aligned_cols=99 Identities=10% Similarity=0.056 Sum_probs=74.1
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhCCC---------------------------------------CeEEEecC
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------------ADVTGVEL 127 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~---------------------------------------~~v~~vD~ 127 (229)
.++......++.++||.+||+|.+++.++..+. .+|+|+|+
T Consensus 186 ~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDi 265 (385)
T 3ldu_A 186 GLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDI 265 (385)
T ss_dssp HHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEES
T ss_pred HHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEEC
Confidence 344445667889999999999999998876521 37999999
Q ss_pred CCC----------------CCeEEEcCCCCCCCCCCceeEEEcc--cc---hhhhCHHHHHHHHHhcccc--CcEEEEEe
Q 027039 128 MDS----------------LPLVSRADPHNLPFFDEAFDVAFTA--HL---AEALFPSRFVGEMERTVKI--GGVCMVLM 184 (229)
Q Consensus 128 s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~~---~~~~~~~~~l~~~~~~Lkp--gG~lil~~ 184 (229)
++. .+.+.++|+.+++.+ ++||+|++| +. .......++.+++.+.||+ ||.+++++
T Consensus 266 d~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 266 DEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp CHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 987 245899999988754 589999998 21 1111345677777777776 99999888
Q ss_pred ec
Q 027039 185 EE 186 (229)
Q Consensus 185 ~~ 186 (229)
+.
T Consensus 345 ~~ 346 (385)
T 3ldu_A 345 SY 346 (385)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.9e-08 Score=87.09 Aligned_cols=98 Identities=13% Similarity=0.039 Sum_probs=72.7
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCC---------------------------------------CeEEEecCC
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------------ADVTGVELM 128 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~---------------------------------------~~v~~vD~s 128 (229)
++......++..+||.+||+|.+++..+..+. .+|+|+|++
T Consensus 193 ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid 272 (393)
T 3k0b_A 193 LVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDID 272 (393)
T ss_dssp HHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred HHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECC
Confidence 34445567889999999999999988876521 359999999
Q ss_pred CC----------------CCeEEEcCCCCCCCCCCceeEEEcc--cchhh---hCHHHHHHHHHhcccc--CcEEEEEee
Q 027039 129 DS----------------LPLVSRADPHNLPFFDEAFDVAFTA--HLAEA---LFPSRFVGEMERTVKI--GGVCMVLME 185 (229)
Q Consensus 129 ~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~~~~~---~~~~~~l~~~~~~Lkp--gG~lil~~~ 185 (229)
+. .+.++++|+.+++.+ .+||+|++| +.... ....++.+++.+.+|+ ||.++++++
T Consensus 273 ~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 273 ARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 86 256999999998764 589999998 32111 1234566666666666 999998887
Q ss_pred c
Q 027039 186 E 186 (229)
Q Consensus 186 ~ 186 (229)
.
T Consensus 352 ~ 352 (393)
T 3k0b_A 352 Y 352 (393)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-09 Score=86.27 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=53.1
Q ss_pred HHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCC-CceeE
Q 027039 86 KHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFD-EAFDV 151 (229)
Q Consensus 86 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~-~~fD~ 151 (229)
..+.....+.++.+|||||||+|.++..+++.+ .+|+|+|+++. .+.++++|+.++++++ ..| .
T Consensus 20 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~ 97 (244)
T 1qam_A 20 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-K 97 (244)
T ss_dssp HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-E
T ss_pred HHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-E
Confidence 334444455788999999999999999999987 59999999975 3568999999988764 455 4
Q ss_pred EEcc
Q 027039 152 AFTA 155 (229)
Q Consensus 152 V~~~ 155 (229)
|++|
T Consensus 98 vv~n 101 (244)
T 1qam_A 98 IFGN 101 (244)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5555
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-08 Score=86.16 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=73.1
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCC---------------------------------------CeEEEecCC
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGV---------------------------------------ADVTGVELM 128 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~---------------------------------------~~v~~vD~s 128 (229)
++.....+++..++|.+||+|.++++.+..+. .+++|+|++
T Consensus 186 ll~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid 265 (384)
T 3ldg_A 186 IILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFD 265 (384)
T ss_dssp HHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred HHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECC
Confidence 34445567889999999999999998876521 359999999
Q ss_pred CC----------------CCeEEEcCCCCCCCCCCceeEEEcc--cchh---hhCHHHHHHHHHhcccc--CcEEEEEee
Q 027039 129 DS----------------LPLVSRADPHNLPFFDEAFDVAFTA--HLAE---ALFPSRFVGEMERTVKI--GGVCMVLME 185 (229)
Q Consensus 129 ~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~--~~~~---~~~~~~~l~~~~~~Lkp--gG~lil~~~ 185 (229)
+. .+.++++|+.+++.+ .+||+|++| +-.. .....++.+++.+.||+ ||.++++++
T Consensus 266 ~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 266 GRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 86 255899999998764 589999998 2111 11345666777777766 999998888
Q ss_pred c
Q 027039 186 E 186 (229)
Q Consensus 186 ~ 186 (229)
.
T Consensus 345 ~ 345 (384)
T 3ldg_A 345 D 345 (384)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.9e-08 Score=85.15 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
+.++.+|||+|||+|.++..+++.+. +|+|+|+++.+ +.++.+|+.+... .+||+|+++--..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCcc
Confidence 37889999999999999999999854 99999999762 5689999988643 2899999963211
Q ss_pred hhCHHHHHHHHHhccccCcEEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
. ....+++.+. .|+|||.+++.
T Consensus 365 g-~~~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 365 G-LHPRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp C-SCHHHHHHHH-HHCCSEEEEEE
T ss_pred c-hHHHHHHHHH-hcCCCcEEEEE
Confidence 1 1234555554 49999987754
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.7e-08 Score=82.18 Aligned_cols=61 Identities=23% Similarity=0.178 Sum_probs=52.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC------------CeEEEcCCCCCCCCCC-ceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL------------PLVSRADPHNLPFFDE-AFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~------------~~~~~~d~~~~~~~~~-~fD~V~~~ 155 (229)
.+.++ +|||||||+|.++..+++.+ .+|+|+|+++.+ +.++++|+.++++++. .+|.|++|
T Consensus 44 ~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~N 117 (271)
T 3fut_A 44 RPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVAN 117 (271)
T ss_dssp CCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEE
T ss_pred CCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEec
Confidence 45778 99999999999999999997 499999999873 4589999998887543 68999997
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=78.49 Aligned_cols=116 Identities=13% Similarity=0.003 Sum_probs=73.4
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----C---------eEEEcCCCCCCCCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----P---------LVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----~---------~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
..++++.+|||+||++|.++..+++. +...|.|+|+...+ . .....+..-..+..+.+|+|+|.-.
T Consensus 77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A 156 (300)
T 3eld_A 77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG 156 (300)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc
Confidence 56689999999999999999999986 77789999987431 0 1122222223345679999999722
Q ss_pred hh----hhC---HHHHHHHHHhccccC-cEEEEEeecCCcccHHHH----HHHHhcCceeEe
Q 027039 158 AE----ALF---PSRFVGEMERTVKIG-GVCMVLMEECAGREIKQI----VELFRTSRFVDA 207 (229)
Q Consensus 158 ~~----~~~---~~~~l~~~~~~Lkpg-G~lil~~~~~~~~~~~~l----~~l~~~~~~~~~ 207 (229)
.. ..+ -..++.-+.++|+|| |.|++=+-...+.+..++ ...|+.....+.
T Consensus 157 PnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~~~KP 218 (300)
T 3eld_A 157 ESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGIVRVP 218 (300)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEEECCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEEEEeC
Confidence 22 111 134577778999999 997765443113333333 344544444333
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-08 Score=81.08 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=51.8
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCC----CceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFD----EAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~----~~fD~V~~ 154 (229)
..+.++.+|||||||+|.++..+++.+ .+|+|+|+++. .+.++++|+.++++++ ++|| |++
T Consensus 25 ~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~ 102 (255)
T 3tqs_A 25 IHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVG 102 (255)
T ss_dssp HCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEE
T ss_pred cCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEe
Confidence 355788999999999999999999997 59999999976 3569999999987643 5788 666
Q ss_pred c
Q 027039 155 A 155 (229)
Q Consensus 155 ~ 155 (229)
|
T Consensus 103 N 103 (255)
T 3tqs_A 103 N 103 (255)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.8e-07 Score=78.22 Aligned_cols=81 Identities=14% Similarity=0.008 Sum_probs=65.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhhCHH
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPS 164 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~ 164 (229)
.+++|+++||+||.+|.++..+.++|. .|+|+|+.+- .+.++++|+.....+.+.||+|+|.-... |.
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 458999999999999999999999975 9999998764 35688999988777778999999954443 76
Q ss_pred HHHHHHHhccccC
Q 027039 165 RFVGEMERTVKIG 177 (229)
Q Consensus 165 ~~l~~~~~~Lkpg 177 (229)
..+..+.+.+..|
T Consensus 284 ~~~~l~~~wl~~~ 296 (375)
T 4auk_A 284 KVAALMAQWLVNG 296 (375)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HhHHHHHHHHhcc
Confidence 6666666666655
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-07 Score=74.16 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=68.6
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CC----CeEEEec--CCCCC-----CeEEE---c-CCCCCCCCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GV----ADVTGVE--LMDSL-----PLVSR---A-DPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~----~~v~~vD--~s~~~-----~~~~~---~-d~~~~~~~~~~fD~V~~~ 155 (229)
..++++++|+|+||++|.+++..++. +. +.++|+| +.|.. +.+++ + |+.+++ ..++|+|+|.
T Consensus 69 ~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSD 146 (269)
T 2px2_A 69 RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCD 146 (269)
T ss_dssp TSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEEC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeC
Confidence 46799999999999999999999887 33 4566777 33331 13333 6 888743 5689999996
Q ss_pred cchh----hhCH---HHHHHHHHhccccCc-EEEEEeecCCcccHH----HHHHHHhc
Q 027039 156 HLAE----ALFP---SRFVGEMERTVKIGG-VCMVLMEECAGREIK----QIVELFRT 201 (229)
Q Consensus 156 ~~~~----~~~~---~~~l~~~~~~LkpgG-~lil~~~~~~~~~~~----~l~~l~~~ 201 (229)
-... ..+. ..++.-+.++|+||| .|++=+-..+..++. .+...|+.
T Consensus 147 MAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~ 204 (269)
T 2px2_A 147 IGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGG 204 (269)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCC
Confidence 2111 1111 225666778999999 766544443223333 34444554
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-07 Score=78.51 Aligned_cols=107 Identities=8% Similarity=-0.017 Sum_probs=71.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCC---CceeEEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLPFFD---EAFDVAF 153 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~---~~fD~V~ 153 (229)
.+++.+|||+|||+|..+..+++. +.++|+++|+++. .+.++++|+.+++..+ ++||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 478999999999999999999986 4579999999976 3568888988765432 5799999
Q ss_pred cc------c-chhhh-----------C-------HHHHHHHHHhccccCcEEEEEeecCC-cccHHHHHHHHhc
Q 027039 154 TA------H-LAEAL-----------F-------PSRFVGEMERTVKIGGVCMVLMEECA-GREIKQIVELFRT 201 (229)
Q Consensus 154 ~~------~-~~~~~-----------~-------~~~~l~~~~~~LkpgG~lil~~~~~~-~~~~~~l~~l~~~ 201 (229)
++ . +..+. + ..+++..+.+.++ ||+++..+-... .++...+..++++
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~ 252 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQ 252 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTT
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHh
Confidence 74 1 11110 1 1346777778887 898665443322 2333345555553
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=82.18 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCC--CCC-------------
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLP--FFD------------- 146 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~--~~~------------- 146 (229)
+.+|||+|||+|.++..++.. ..+|+|+|+++. .+.++.+|+.+.. +.+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 292 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 292 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence 578999999999999999885 459999999986 2458888886631 211
Q ss_pred -CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 147 -EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 147 -~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
.+||+|+++--.. .+..++.+.|+++|.++.+ +....--.+.+..+.+..++.++.-++.
T Consensus 293 ~~~fD~Vv~dPPr~-----g~~~~~~~~l~~~g~ivyv-sc~p~t~ard~~~l~~~y~~~~~~~~D~ 353 (369)
T 3bt7_A 293 SYQCETIFVDPPRS-----GLDSETEKMVQAYPRILYI-SCNPETLCKNLETLSQTHKVERLALFDQ 353 (369)
T ss_dssp GCCEEEEEECCCTT-----CCCHHHHHHHTTSSEEEEE-ESCHHHHHHHHHHHHHHEEEEEEEEECC
T ss_pred cCCCCEEEECcCcc-----ccHHHHHHHHhCCCEEEEE-ECCHHHHHHHHHHHhhCcEEEEEEeecc
Confidence 3799999752111 1345667777899987644 3321111223333433455555555544
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.1e-07 Score=75.94 Aligned_cols=92 Identities=23% Similarity=0.266 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------------CCeEEEcCCCC-CCCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------------LPLVSRADPHN-LPFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------------~~~~~~~d~~~-~~~~~~~fD~V 152 (229)
....+||-||.|.|..+.++.+. +..+|+.+|+++. .++++.+|+.. +.-.+++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 56789999999999999999987 6779999999987 23478888877 33456799999
Q ss_pred Ecccc-----hhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 153 FTAHL-----AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 153 ~~~~~-----~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.... ...+.-.++++.+.+.|+|||.++...+.
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 98622 22334578999999999999998866554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=77.67 Aligned_cols=123 Identities=14% Similarity=0.068 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHh--------CC-----CCeEEEecCCCC-------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNS--------IG-----VADVTGVELMDS------------------------------- 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~--------~g-----~~~v~~vD~s~~------------------------------- 130 (229)
+++.+|||||+|+|..+..+.+ .+ ..+++++|..+.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 4567999999999998877543 22 248999998761
Q ss_pred ------------CCeEEEcCCCC-CCCCC----CceeEEEcccchhhhC----HHHHHHHHHhccccCcEEEEEeecCCc
Q 027039 131 ------------LPLVSRADPHN-LPFFD----EAFDVAFTAHLAEALF----PSRFVGEMERTVKIGGVCMVLMEECAG 189 (229)
Q Consensus 131 ------------~~~~~~~d~~~-~~~~~----~~fD~V~~~~~~~~~~----~~~~l~~~~~~LkpgG~lil~~~~~~~ 189 (229)
.+.++.+|+.+ ++..+ ..||+|+...+....+ -.++++++.+.|||||.++..+. .
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa--a- 215 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS--A- 215 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC--B-
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC--C-
Confidence 12366778766 44322 2799999864332222 36799999999999999763221 1
Q ss_pred ccHHHHHHHHhcCceeEeeeeeecCCeeEEEEEEe
Q 027039 190 REIKQIVELFRTSRFVDAANVTVNGSNMTRILMRR 224 (229)
Q Consensus 190 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (229)
..+.+.+...+|. +..+.++|.+..++...+
T Consensus 216 ---~~vrr~L~~aGF~-v~~~~g~~~kr~m~~a~~ 246 (257)
T 2qy6_A 216 ---GFVRRGLQEAGFT-MQKRKGFGRKREMLCGVM 246 (257)
T ss_dssp ---HHHHHHHHHHTEE-EEEECCSTTCCCEEEEEE
T ss_pred ---HHHHHHHHHCCCE-EEeCCCCCCCCceEEEEe
Confidence 2466667777886 667788887755555444
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=70.60 Aligned_cols=61 Identities=15% Similarity=0.018 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCCC-hhhHHHHh-CCCCeEEEecCCCCCCeEEEcCCCCCCCCC-CceeEEEccc
Q 027039 95 FNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPLVSRADPHNLPFFD-EAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G-~~~~~l~~-~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~-~~fD~V~~~~ 156 (229)
.++.+|||||||+| ..+..|++ .|+ +|+++|+++..+.++..|+.+....- ..||+|.+..
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsir 97 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIR 97 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEES
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccceEEccCCCCcccccCCcCEEEEcC
Confidence 66789999999999 59999998 688 99999999999999999998843211 4899998743
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.1e-07 Score=84.21 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=77.6
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhCC-------------------------------------------CCeEEEe
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIG-------------------------------------------VADVTGV 125 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g-------------------------------------------~~~v~~v 125 (229)
+.....+++..+||.+||+|.+++..+..+ ...++|+
T Consensus 183 l~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~ 262 (703)
T 3v97_A 183 VMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGS 262 (703)
T ss_dssp HHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred HHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEE
Confidence 333455788999999999999998876531 1379999
Q ss_pred cCCCCC----------------CeEEEcCCCCC--CCCCCceeEEEcc--cchhh---hCHHH---HHHHHHhccccCcE
Q 027039 126 ELMDSL----------------PLVSRADPHNL--PFFDEAFDVAFTA--HLAEA---LFPSR---FVGEMERTVKIGGV 179 (229)
Q Consensus 126 D~s~~~----------------~~~~~~d~~~~--~~~~~~fD~V~~~--~~~~~---~~~~~---~l~~~~~~LkpgG~ 179 (229)
|+++.+ +.+.++|+.++ |..+++||+|++| +-... ....+ .+.++.+.+.|||.
T Consensus 263 Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 263 DSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp ESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 999872 46899999886 4434589999998 21111 11233 34555555668999
Q ss_pred EEEEeecCCcccHHHHHHHHhcCceeEeeeeeec
Q 027039 180 CMVLMEECAGREIKQIVELFRTSRFVDAANVTVN 213 (229)
Q Consensus 180 lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 213 (229)
++++++. .++.+..++...+....+
T Consensus 343 ~~ilt~~---------~~l~~~~glk~~k~~~l~ 367 (703)
T 3v97_A 343 LSLFSAS---------PDLLSCLQLRADKQYKAK 367 (703)
T ss_dssp EEEEESC---------HHHHHTTCCCEEEEEEEE
T ss_pred EEEEeCC---------HHHHHHhCCCcccceeee
Confidence 9988886 334455555555555443
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.2e-07 Score=74.24 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=50.3
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------CCeEEEcCCCCCCCCCCc-eeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLPFFDEA-FDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~~-fD~V~~~ 155 (229)
....++.+|||||||+|.++..+++.|..+|+|+|+++. .+.++++|+.++++++.. ...|++|
T Consensus 27 ~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~vv~N 102 (249)
T 3ftd_A 27 LNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKVVGN 102 (249)
T ss_dssp TTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEEEEE
T ss_pred cCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEEEEE
Confidence 345688999999999999999999997569999999975 246889999998875421 2255554
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.1e-08 Score=84.20 Aligned_cols=85 Identities=18% Similarity=0.151 Sum_probs=65.5
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC------------------------------CeEEEcCCCCCC-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL------------------------------PLVSRADPHNLP- 143 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~------------------------------~~~~~~d~~~~~- 143 (229)
++.+|||+|||+|..+..++.. |..+|+++|+++.. +.++++|+.+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 6889999999999999999987 65689999999761 446677765532
Q ss_pred CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 144 FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...++||+|+.+-.. .+.+++..+.+.|||||.+++.
T Consensus 127 ~~~~~fD~I~lDP~~---~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 127 ERHRYFHFIDLDPFG---SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HSTTCEEEEEECCSS---CCHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCCCEEEeCCCC---CHHHHHHHHHHhcCCCCEEEEE
Confidence 113579999975322 2468899999999999987654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=79.44 Aligned_cols=133 Identities=12% Similarity=0.087 Sum_probs=85.7
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC----C---------------CCeEEEecCCCC---------------C-----CeE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI----G---------------VADVTGVELMDS---------------L-----PLV 134 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~----g---------------~~~v~~vD~s~~---------------~-----~~~ 134 (229)
..++.+|+|.|||+|.+...+++. + ...++|+|+++. . ..+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 356789999999999998887643 1 137999999976 1 457
Q ss_pred EEcCCCCCC-CCCCceeEEEcccchhh--------------h-CHHHHHHHHHhccccCcEEEEEeecC---CcccHHHH
Q 027039 135 SRADPHNLP-FFDEAFDVAFTAHLAEA--------------L-FPSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQI 195 (229)
Q Consensus 135 ~~~d~~~~~-~~~~~fD~V~~~~~~~~--------------~-~~~~~l~~~~~~LkpgG~lil~~~~~---~~~~~~~l 195 (229)
.++|....+ ...++||+|++|--... . ....+++.+.+.|||||++.++++.. .......+
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~i 326 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI 326 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHH
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHH
Confidence 778876543 34578999999821110 0 12468999999999999999998763 22223445
Q ss_pred H-HHHhcCceeEeeeeee-----cCCeeEEEEEEecc
Q 027039 196 V-ELFRTSRFVDAANVTV-----NGSNMTRILMRRTR 226 (229)
Q Consensus 196 ~-~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 226 (229)
. .+.++..+..+..+.. .|-...++++++++
T Consensus 327 R~~L~~~~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~ 363 (541)
T 2ar0_A 327 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 363 (541)
T ss_dssp HHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBC
T ss_pred HHHHhhcCCEEEEEEcCcCcccCCCCcEEEEEEECCC
Confidence 3 3455555555554422 13333455555543
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-06 Score=70.94 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=69.2
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------CCeEEEc-CCCCCCCCCCceeE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------LPLVSRA-DPHNLPFFDEAFDV 151 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------~~~~~~~-d~~~~~~~~~~fD~ 151 (229)
+.+...++++.+|||+||++|.++...+.. |...|.|+|+... .+.++++ |+..++. ..+|+
T Consensus 86 i~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ 163 (321)
T 3lkz_A 86 LVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDT 163 (321)
T ss_dssp HHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSE
T ss_pred HHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCE
Confidence 334456789999999999999999988777 8878999999866 2236665 7766653 67999
Q ss_pred EEcccchhhh-CH-------HHHHHHHHhccccC-cEEEEEeec
Q 027039 152 AFTAHLAEAL-FP-------SRFVGEMERTVKIG-GVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~~-~~-------~~~l~~~~~~Lkpg-G~lil~~~~ 186 (229)
|+|. +.+.. +| ..+|+-+.+.|++| |.+++=+-+
T Consensus 164 ivcD-igeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 164 LLCD-IGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp EEEC-CCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred EEEE-CccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 9995 22222 22 23566667889988 877665544
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-07 Score=83.54 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------C--CeEEEcCCCCCC--CCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------L--PLVSRADPHNLP--FFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~--~~~~~~d~~~~~--~~~~~fD~V~ 153 (229)
+++.+|||++||+|.+++.++.. |..+|+++|+++. . +.++++|+.+.. -..++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46889999999999999999885 5569999999976 1 667788875531 1246899999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
++-.. .+.+++..+.+.|+|||.+++..
T Consensus 131 lDP~g---~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDPFG---TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECCSS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCc---CHHHHHHHHHHHhCCCCEEEEEe
Confidence 86521 24578999999999999776543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-06 Score=68.23 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=66.9
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------CCeEEEc-CCCCCCCCCCceeEEEc
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------LPLVSRA-DPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------~~~~~~~-d~~~~~~~~~~fD~V~~ 154 (229)
.-.++++.+|+|+||++|.++...+.. |...|.|+|+... .+.|+++ |+..++ ..++|.|+|
T Consensus 73 k~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~Dtllc 150 (267)
T 3p8z_A 73 RNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLC 150 (267)
T ss_dssp TTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEE
T ss_pred hcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEE
Confidence 336689999999999999999988877 8779999999865 3448887 876654 367999999
Q ss_pred ccchhhh-CH-------HHHHHHHHhccccCcEEEEEeec
Q 027039 155 AHLAEAL-FP-------SRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~~~~~~~-~~-------~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
. +.+.. +| .++++-+.+.|++ |.+++=+-+
T Consensus 151 D-IgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 151 D-IGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp C-CCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred e-cCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 5 22211 22 2356667788998 665554444
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-06 Score=74.71 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=63.4
Q ss_pred CCeEEEEcCCCChhhHHHH--------hC--------CCCeEEEecCCCCC--------C-------------------e
Q 027039 97 HSKVLCVSAGAGHEVMAFN--------SI--------GVADVTGVELMDSL--------P-------------------L 133 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~--------~~--------g~~~v~~vD~s~~~--------~-------------------~ 133 (229)
..+|+|+|||+|..+..+. +. +.-+|..-|+.... . -
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5789999999999888762 11 22367777765442 1 1
Q ss_pred EE---EcCCCCCCCCCCceeEEEcccchhhhC--H-------------------------------------HHHHHHHH
Q 027039 134 VS---RADPHNLPFFDEAFDVAFTAHLAEALF--P-------------------------------------SRFVGEME 171 (229)
Q Consensus 134 ~~---~~d~~~~~~~~~~fD~V~~~~~~~~~~--~-------------------------------------~~~l~~~~ 171 (229)
|+ -+......|++++||+|+++...|.+. | ..+++..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 223344558899999999996555441 2 23578889
Q ss_pred hccccCcEEEEEeecCC
Q 027039 172 RTVKIGGVCMVLMEECA 188 (229)
Q Consensus 172 ~~LkpgG~lil~~~~~~ 188 (229)
+.|+|||++++.+...+
T Consensus 213 ~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHEEEEEEEEEEEEECC
T ss_pred HHhCCCCEEEEEEecCC
Confidence 99999999998887654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.31 E-value=4e-06 Score=78.90 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C---CCeEEEecCCCCCCe---------------------EEEcCCCCC-CCCCCc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G---VADVTGVELMDSLPL---------------------VSRADPHNL-PFFDEA 148 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g---~~~v~~vD~s~~~~~---------------------~~~~d~~~~-~~~~~~ 148 (229)
.++.+|||.|||+|.+..+++.. + ..+++|+|+++..+. +...|..+. +...++
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 46889999999999999998876 3 247999999987322 222233221 223578
Q ss_pred eeEEEcc--cchhhh---------------------------C-HHHHHHHHHhccccCcEEEEEeecCC----cccHHH
Q 027039 149 FDVAFTA--HLAEAL---------------------------F-PSRFVGEMERTVKIGGVCMVLMEECA----GREIKQ 194 (229)
Q Consensus 149 fD~V~~~--~~~~~~---------------------------~-~~~~l~~~~~~LkpgG~lil~~~~~~----~~~~~~ 194 (229)
||+|++| +..... + ...+++.+.+.|||||++.++++..- ......
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kk 479 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKA 479 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHH
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHH
Confidence 9999998 211000 0 23478889999999999999998732 112445
Q ss_pred HHH-HHhcCceeEeeeeee
Q 027039 195 IVE-LFRTSRFVDAANVTV 212 (229)
Q Consensus 195 l~~-l~~~~~~~~~~~~~~ 212 (229)
+.+ +.++..+..+.++..
T Consensus 480 LRk~LLe~~~I~aIIdLP~ 498 (878)
T 3s1s_A 480 FREFLVGNFGLEHIFLYPR 498 (878)
T ss_dssp HHHHHTTTTCEEEEEECCB
T ss_pred HHHHHHhCCCeEEEEECCC
Confidence 554 466778887777644
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.4e-08 Score=79.46 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCC-------C----------------CCeEEEcCCCCC-C-CCC--C
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMD-------S----------------LPLVSRADPHNL-P-FFD--E 147 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~-------~----------------~~~~~~~d~~~~-~-~~~--~ 147 (229)
.++.+|||+|||+|..+..++..+. +|+|+|+++ . .+.++++|+.+. + +++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 5678999999999999999999875 999999999 3 266889998873 3 444 7
Q ss_pred ceeEEEccc
Q 027039 148 AFDVAFTAH 156 (229)
Q Consensus 148 ~fD~V~~~~ 156 (229)
+||+|+++-
T Consensus 161 ~fD~V~~dP 169 (258)
T 2r6z_A 161 KPDIVYLDP 169 (258)
T ss_dssp CCSEEEECC
T ss_pred CccEEEECC
Confidence 899999973
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.9e-07 Score=83.48 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCChhhHH---HHhCCCC--eEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMA---FNSIGVA--DVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~---l~~~g~~--~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+..|||||||+|.+... .++.+.. +|+|+|.++. .+.++++|++++..+ +++|+|++=
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 345799999999988433 3333222 6899999875 466999999998765 689999996
Q ss_pred cc----hhhhCHHHHHHHHHhccccCcEEE
Q 027039 156 HL----AEALFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 156 ~~----~~~~~~~~~l~~~~~~LkpgG~li 181 (229)
-+ ..+..+ +.+....|.|||||.++
T Consensus 436 wMG~fLl~E~ml-evL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADNELSP-ECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred cCcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence 22 222234 67888889999999743
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.1e-07 Score=75.10 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=49.2
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCC---CeEEEecCCCC-----------CCeEEEcCCCCCCCCCC------ceeEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGV---ADVTGVELMDS-----------LPLVSRADPHNLPFFDE------AFDVA 152 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~---~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~------~fD~V 152 (229)
.+.++.+|||||||+|.++..+++.+. ++|+|+|+++. .+.++++|+.++++++- ..+.|
T Consensus 39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~v 118 (279)
T 3uzu_A 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIARPGDEPSLRI 118 (279)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSCSSSSCCEEE
T ss_pred CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcccccCCceEE
Confidence 457889999999999999999998843 23999999976 35689999999876431 23456
Q ss_pred Ecc
Q 027039 153 FTA 155 (229)
Q Consensus 153 ~~~ 155 (229)
++|
T Consensus 119 v~N 121 (279)
T 3uzu_A 119 IGN 121 (279)
T ss_dssp EEE
T ss_pred EEc
Confidence 665
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6.3e-07 Score=73.91 Aligned_cols=60 Identities=12% Similarity=-0.024 Sum_probs=46.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCe--EEEecCCCC-------------CCeEEEcCCCCCCCCC-----CceeEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVAD--VTGVELMDS-------------LPLVSRADPHNLPFFD-----EAFDVA 152 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~--v~~vD~s~~-------------~~~~~~~d~~~~~~~~-----~~fD~V 152 (229)
.+.++.+|||||||+|.++. +.. + .+ |+|+|+++. .+.++++|+.++++++ +..|.|
T Consensus 18 ~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~v 94 (252)
T 1qyr_A 18 NPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRV 94 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEE
T ss_pred CCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEE
Confidence 45788999999999999999 754 3 36 999999965 2458899998877543 234678
Q ss_pred Ecc
Q 027039 153 FTA 155 (229)
Q Consensus 153 ~~~ 155 (229)
++|
T Consensus 95 vsN 97 (252)
T 1qyr_A 95 FGN 97 (252)
T ss_dssp EEE
T ss_pred EEC
Confidence 887
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.3e-06 Score=74.33 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=82.7
Q ss_pred CeEEEEcCCCChhhHHHHhC--------C--------CCeEEEecCCCCCC--------------eE--EEcCCCCCC-C
Q 027039 98 SKVLCVSAGAGHEVMAFNSI--------G--------VADVTGVELMDSLP--------------LV--SRADPHNLP-F 144 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~--------g--------~~~v~~vD~s~~~~--------------~~--~~~d~~~~~-~ 144 (229)
.+|+|.+||+|.+.....+. + ...++|+|+++.+. .+ .++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 39999999999988776432 0 24899999998621 12 566655443 4
Q ss_pred CCCceeEEEcc--cchh---------------h--------h-----CHHHHHHHHHhccccCcEEEEEeecC---Cc-c
Q 027039 145 FDEAFDVAFTA--HLAE---------------A--------L-----FPSRFVGEMERTVKIGGVCMVLMEEC---AG-R 190 (229)
Q Consensus 145 ~~~~fD~V~~~--~~~~---------------~--------~-----~~~~~l~~~~~~LkpgG~lil~~~~~---~~-~ 190 (229)
.+.+||+|++| +... . . .-..+++.+.+.|||||++.++++.. .. .
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~ 405 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTN 405 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGG
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcc
Confidence 56899999998 1110 0 1 01368999999999999999998762 12 2
Q ss_pred cHHHHHH-HHhcCceeEeeeeee-----cCCeeEEEEEEecc
Q 027039 191 EIKQIVE-LFRTSRFVDAANVTV-----NGSNMTRILMRRTR 226 (229)
Q Consensus 191 ~~~~l~~-l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 226 (229)
....+.+ +..+..+..+..+.. .+-..-++++++++
T Consensus 406 ~~~~iRk~Lle~~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k 447 (544)
T 3khk_A 406 NEGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDK 447 (544)
T ss_dssp GHHHHHHHHHHTTCEEEEEECCTTBCCSCSSCEEEEEEESCC
T ss_pred hHHHHHHHHHhCCcHhEEEECCCCCCCCCCCCeEEEEEecCC
Confidence 3345554 566777777766532 23333445555543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=8.8e-07 Score=77.22 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=63.9
Q ss_pred CCeEEEEcCCCChhhHHHHhC------------------CCCeEEEecCCCC------------------------CCeE
Q 027039 97 HSKVLCVSAGAGHEVMAFNSI------------------GVADVTGVELMDS------------------------LPLV 134 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~------------------g~~~v~~vD~s~~------------------------~~~~ 134 (229)
..+|+|+||++|..+..+... +.-+|..-|+... ..-|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999888876433 2225666776632 1235
Q ss_pred EEcCCCC---CCCCCCceeEEEcccchhhh-C-H--------------------------------------HHHHHHHH
Q 027039 135 SRADPHN---LPFFDEAFDVAFTAHLAEAL-F-P--------------------------------------SRFVGEME 171 (229)
Q Consensus 135 ~~~d~~~---~~~~~~~fD~V~~~~~~~~~-~-~--------------------------------------~~~l~~~~ 171 (229)
+.+.... ..|+++++|+|++++..|.+ + | ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444 56889999999999655554 2 2 11256668
Q ss_pred hccccCcEEEEEeecCCc
Q 027039 172 RTVKIGGVCMVLMEECAG 189 (229)
Q Consensus 172 ~~LkpgG~lil~~~~~~~ 189 (229)
+.|+|||++++.+...+.
T Consensus 213 ~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 213 EELISRGRMLLTFICKED 230 (384)
T ss_dssp HHEEEEEEEEEEEECCCT
T ss_pred HHhccCCeEEEEEecCCC
Confidence 999999999988876543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.7e-07 Score=84.64 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCChhhHHH--HhC--C----------CCeEEEecCCCC---------------CCeEEEcCCCCCCCC--
Q 027039 97 HSKVLCVSAGAGHEVMAF--NSI--G----------VADVTGVELMDS---------------LPLVSRADPHNLPFF-- 145 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l--~~~--g----------~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~-- 145 (229)
+..|||||||+|.++... |.. + ..+|+|+|.++. .+.++++|++++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 457999999999996432 111 1 239999999864 477999999997653
Q ss_pred ---CCceeEEEcccchhhh---CHHHHHHHHHhccccCcEEE
Q 027039 146 ---DEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 146 ---~~~fD~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~li 181 (229)
.+++|+|++--+.... -..+++..+.+.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 5799999996333222 23467888889999999743
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.9e-07 Score=75.43 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=58.7
Q ss_pred CCCC--CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------------------------CCeEEEcCCCC-CCCCC
Q 027039 94 LFNH--SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------------------LPLVSRADPHN-LPFFD 146 (229)
Q Consensus 94 ~~~~--~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------------------~~~~~~~d~~~-~~~~~ 146 (229)
++++ .+|||+|||+|..+..++..|. +|+++|+++. .++++++|..+ ++...
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~ 162 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence 3566 8999999999999999999976 8999999983 24588888776 33223
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCc
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGG 178 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG 178 (229)
++||+|+++-...+.....++++..+.+++.+
T Consensus 163 ~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 163 PRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp SCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred ccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence 47999999744433322355666667776655
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-05 Score=70.91 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC----CCCeEEEecCCCC-----------------CCeEEEcCCCCC--C-CCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI----GVADVTGVELMDS-----------------LPLVSRADPHNL--P-FFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~----g~~~v~~vD~s~~-----------------~~~~~~~d~~~~--~-~~~~~fD 150 (229)
.++.+|+|.+||+|.+...+.+. +...++|+|+++. ...+.++|.... | ....+||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 46789999999999988877654 3458999999976 124778887765 4 4567999
Q ss_pred EEEcc--cch-h--------------h--h-----CHHHHHHHHHhccc-cCcEEEEEeecC---CcccHHHHHH-HHhc
Q 027039 151 VAFTA--HLA-E--------------A--L-----FPSRFVGEMERTVK-IGGVCMVLMEEC---AGREIKQIVE-LFRT 201 (229)
Q Consensus 151 ~V~~~--~~~-~--------------~--~-----~~~~~l~~~~~~Lk-pgG~lil~~~~~---~~~~~~~l~~-l~~~ 201 (229)
+|++| +.. + . . .-..+++.+.+.|| |||++.++++.. .......+.+ +..+
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~ 379 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEE 379 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHT
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhC
Confidence 99998 110 0 0 0 01358999999999 999999898873 2222344444 4667
Q ss_pred CceeEeeee
Q 027039 202 SRFVDAANV 210 (229)
Q Consensus 202 ~~~~~~~~~ 210 (229)
..+..+..+
T Consensus 380 ~~l~~II~L 388 (542)
T 3lkd_A 380 GAIDTVIGL 388 (542)
T ss_dssp TCEEEEEEC
T ss_pred CceeEEEEc
Confidence 777767665
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=9.5e-07 Score=74.71 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=50.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------------CCeEEEcCCCCCC--CC---CCceeEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------------LPLVSRADPHNLP--FF---DEAFDVA 152 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------------~~~~~~~d~~~~~--~~---~~~fD~V 152 (229)
.++++.+|||+|||+|..+..+++. +.++|+|+|+++. .+.++++|+.+++ +. .++||.|
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~V 102 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 102 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence 3468899999999999999999987 4569999999976 2458889988764 11 1589999
Q ss_pred Ecc
Q 027039 153 FTA 155 (229)
Q Consensus 153 ~~~ 155 (229)
+++
T Consensus 103 l~D 105 (301)
T 1m6y_A 103 LMD 105 (301)
T ss_dssp EEE
T ss_pred EEc
Confidence 975
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.6e-06 Score=71.62 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=67.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------------CCeEEEcCCCCCC-CCCCce
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------------LPLVSRADPHNLP-FFDEAF 149 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------------~~~~~~~d~~~~~-~~~~~f 149 (229)
..++|.+|||+++|+|.-+.++++. ..+.+++.|+++. .+.+...|...++ ...+.|
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 4578999999999999999999988 4458999999975 1235556666543 345789
Q ss_pred eEEEcccc------h---------hhhC----------HHHHHHHHHhccccCcEEEEEeec
Q 027039 150 DVAFTAHL------A---------EALF----------PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 150 D~V~~~~~------~---------~~~~----------~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|.|++..- . +... ..+++..+.+.|||||+++-.|-.
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 99997510 0 0001 146788899999999997755544
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.1e-06 Score=73.04 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCC-CC-CCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNL-PF-FDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~-~~-~~~~fD~V~~~ 155 (229)
.++.+|||+|||+|..+..++..+. +|+++|+++. .+.++++|+.+. +. ++++||+|+++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4689999999999999999998865 9999999976 145888888873 32 24689999997
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.96 E-value=9.2e-05 Score=61.78 Aligned_cols=127 Identities=13% Similarity=0.146 Sum_probs=80.2
Q ss_pred hhhhHHHHHHHHHh-cccCCCCCeEEEEcC------CCChhhHHHHhC-CC-CeEEEecCCCCC---CeEEEcCCCCCCC
Q 027039 77 QVTSYAHFFKHLQG-KSLLFNHSKVLCVSA------GAGHEVMAFNSI-GV-ADVTGVELMDSL---PLVSRADPHNLPF 144 (229)
Q Consensus 77 ~~~~~~~~~~~l~~-~~~~~~~~~vLDiG~------G~G~~~~~l~~~-g~-~~v~~vD~s~~~---~~~~~~d~~~~~~ 144 (229)
.+.-|.++.+.+.. ......+++|||+|+ -+|. ..+++. +. +.++++|+.+-. ..++++|......
T Consensus 89 nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~ 166 (344)
T 3r24_A 89 NVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHT 166 (344)
T ss_dssp HHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEEE
T ss_pred eHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccccCCCeEEEcccccccc
Confidence 34456666666622 234577999999997 3455 333444 33 499999998752 3468999766443
Q ss_pred CCCceeEEEcc---cchhh--------hCH-HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 145 FDEAFDVAFTA---HLAEA--------LFP-SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 145 ~~~~fD~V~~~---~~~~~--------~~~-~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
.++||+|+|. ....+ ... +.++.-+.+.|+|||.|++=+-+... .+.+.++.+ .|..++-+
T Consensus 167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg--~~~L~~lrk--~F~~VK~f 239 (344)
T 3r24_A 167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW--NADLYKLMG--HFSWWTAF 239 (344)
T ss_dssp -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC--CHHHHHHHT--TEEEEEEE
T ss_pred -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC--HHHHHHHHh--hCCeEEEE
Confidence 4889999996 11111 123 45566677899999998866655444 345666654 45544444
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.96 E-value=7.9e-06 Score=70.58 Aligned_cols=95 Identities=9% Similarity=-0.013 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-----------------CCCeEEEecCCCCC----------------CeEEEc---C
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-----------------GVADVTGVELMDSL----------------PLVSRA---D 138 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-----------------g~~~v~~vD~s~~~----------------~~~~~~---d 138 (229)
....+|+|+||++|..+..+... +.-+|+..|+.... .-|+.+ .
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999877765332 22367777876551 123343 3
Q ss_pred CCCCCCCCCceeEEEcccchhhh-C-H--------------------------------HHHHHHHHhccccCcEEEEEe
Q 027039 139 PHNLPFFDEAFDVAFTAHLAEAL-F-P--------------------------------SRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 139 ~~~~~~~~~~fD~V~~~~~~~~~-~-~--------------------------------~~~l~~~~~~LkpgG~lil~~ 184 (229)
+....|+++++|+|+++...|.+ . | ..+|+..++.|+|||++++.+
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 44467899999999999555444 2 1 235888899999999999888
Q ss_pred ecCCc
Q 027039 185 EECAG 189 (229)
Q Consensus 185 ~~~~~ 189 (229)
...+.
T Consensus 210 ~gr~~ 214 (359)
T 1m6e_X 210 LGRRS 214 (359)
T ss_dssp EECSS
T ss_pred ecCCC
Confidence 76543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.85 E-value=6.1e-05 Score=59.86 Aligned_cols=81 Identities=12% Similarity=-0.056 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------C-----CeEEEcCCCCC--------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------L-----PLVSRADPHNL-------------- 142 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~-----~~~~~~d~~~~-------------- 142 (229)
.+..+|||+||| .-+..+++...++|+++|.+++ . ++++.+|+.+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 467899999984 7777777763469999999876 2 45788886542
Q ss_pred -C--------C-CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEE
Q 027039 143 -P--------F-FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 143 -~--------~-~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~li 181 (229)
+ . ..++||+|+...-. ....+..+.+.|+|||.++
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k----~~~~~~~~l~~l~~GG~Iv 151 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRF----RVGCALATAFSITRPVTLL 151 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSS----HHHHHHHHHHHCSSCEEEE
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCC----chhHHHHHHHhcCCCeEEE
Confidence 1 1 23789999986421 2355666779999999964
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=4.7e-05 Score=66.01 Aligned_cols=91 Identities=18% Similarity=0.109 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC-----------------------eEEEcCCCCC----CCCCC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------------LVSRADPHNL----PFFDE 147 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~-----------------------~~~~~d~~~~----~~~~~ 147 (229)
.++.+||-||.|.|..+.++.+.+..+|+.+|+++..+ +++.+|+... +-..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 45689999999999999999887657999999998732 2334443321 11245
Q ss_pred ceeEEEcccch-----------hhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 148 AFDVAFTAHLA-----------EALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 148 ~fD~V~~~~~~-----------~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+||+|+..... ..++-.++++.+.+.|+|||.++....
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 79999986221 122346789999999999999775443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00021 Score=59.72 Aligned_cols=86 Identities=10% Similarity=-0.021 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC------CCCeEEEecCCC---------------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI------GVADVTGVELMD--------------------------------------- 129 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~------g~~~v~~vD~s~--------------------------------------- 129 (229)
.....|||+|+..|..+..++.. +.++++++|..+
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 45779999999999988887643 256899999642
Q ss_pred ----CCCeEEEcCCCC-CC-CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEE
Q 027039 130 ----SLPLVSRADPHN-LP-FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 130 ----~~~~~~~~d~~~-~~-~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~li 181 (229)
..+.++++|+.+ +| +++++||+|+... .........+..+.+.|+|||.++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D~y~~~~~~Le~~~p~L~pGGiIv 241 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-DLYESTWDTLTNLYPKVSVGGYVI 241 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-CSHHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-CccccHHHHHHHHHhhcCCCEEEE
Confidence 235578888765 44 4457899999853 222234578899999999999844
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0005 Score=57.96 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCChhhHHHH----h-CCCC--eEEEecCCCC-----------------------------CCeEEEcC
Q 027039 95 FNHSKVLCVSAGAGHEVMAFN----S-IGVA--DVTGVELMDS-----------------------------LPLVSRAD 138 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~----~-~g~~--~v~~vD~s~~-----------------------------~~~~~~~d 138 (229)
++.-+|||+|-|+|....... + .+.. +++.+|..+- .+.+..+|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 445689999999998654321 1 2222 4566664321 01255677
Q ss_pred CCC-CC-CCCCceeEEEcccchhhhCH----HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 139 PHN-LP-FFDEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 139 ~~~-~~-~~~~~fD~V~~~~~~~~~~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+.+ ++ +++.+||+|+...+.-..+| .++++.+++.++|||.++ +.... -.+.+-+...+|. +..+.+
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la--TYtaa----g~VRR~L~~aGF~-V~k~~G 247 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV--SYSSS----LSVRKSLLTLGFK-VGSSRE 247 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE--ESCCC----HHHHHHHHHTTCE-EEEEEC
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE--EEeCc----HHHHHHHHHCCCE-EEecCC
Confidence 655 33 44568999999766555555 789999999999999955 33222 3567788888987 677889
Q ss_pred cCCeeEEEEEEe
Q 027039 213 NGSNMTRILMRR 224 (229)
Q Consensus 213 ~~~~~~~~~~~~ 224 (229)
+|.+..+++...
T Consensus 248 ~g~KReml~A~~ 259 (308)
T 3vyw_A 248 IGRKRKGTVASL 259 (308)
T ss_dssp C---CEEEEEES
T ss_pred CCCCCceeEEec
Confidence 988866666554
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0015 Score=59.16 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC----C----------CCeEEEecCCCC---------------CCeEEEcCCCCCCC-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI----G----------VADVTGVELMDS---------------LPLVSRADPHNLPF- 144 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~----g----------~~~v~~vD~s~~---------------~~~~~~~d~~~~~~- 144 (229)
+++.+|+|-+||+|.+.....+. . ...++|+|+++. ...+..+|....|.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 56779999999999988766432 1 136999999876 23466677655442
Q ss_pred ---CCCceeEEEccc-ch------------hhh---C-HHHHHHHHHhccc-------cCcEEEEEeecC---CcccHHH
Q 027039 145 ---FDEAFDVAFTAH-LA------------EAL---F-PSRFVGEMERTVK-------IGGVCMVLMEEC---AGREIKQ 194 (229)
Q Consensus 145 ---~~~~fD~V~~~~-~~------------~~~---~-~~~~l~~~~~~Lk-------pgG~lil~~~~~---~~~~~~~ 194 (229)
...+||+|++|- +. ... + -..+++.+.+.|| |||++.++++.. .......
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~ 375 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISAR 375 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHH
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHH
Confidence 235799999981 10 000 1 1346777777776 799999998863 1212233
Q ss_pred HH-HHHhcCceeEeeee
Q 027039 195 IV-ELFRTSRFVDAANV 210 (229)
Q Consensus 195 l~-~l~~~~~~~~~~~~ 210 (229)
+. .+..++.+..|..+
T Consensus 376 iRk~Lle~~~l~aII~L 392 (530)
T 3ufb_A 376 IKEELLKNFNLHTIVRL 392 (530)
T ss_dssp HHHHHHHHSEEEEEEEC
T ss_pred HHHHHhhcCEEEEEEEC
Confidence 43 56778888888776
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00039 Score=73.36 Aligned_cols=89 Identities=26% Similarity=0.225 Sum_probs=44.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-C-----CCeEEEecCCCCCCe----------EEE--cCCCC-CCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-G-----VADVTGVELMDSLPL----------VSR--ADPHN-LPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g-----~~~v~~vD~s~~~~~----------~~~--~d~~~-~~~~~~~fD~V~~~ 155 (229)
.+..+|||||.|+|..+..+.+. + +.+++-+|+++...+ ... .|..+ .++...+||+|++.
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 46789999999999776554332 1 457899999976431 111 13333 24456789999998
Q ss_pred cchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
++.+.. +..+.+.++.+.|||||++++.
T Consensus 1319 ~vl~~t~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1319 CALATLGDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp CC--------------------CCEEEEE
T ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 887766 7888999999999999998765
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0011 Score=55.22 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=49.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-----------CeEEEcCCCCCC-----CCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-----------PLVSRADPHNLP-----FFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-----------~~~~~~d~~~~~-----~~~~~fD~V~~~ 155 (229)
.++++..++|.+||.|..+..+++. .++|+|+|.++.+ +.+++++..+++ ...+++|.|+++
T Consensus 19 ~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 19 AVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILAD 96 (285)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCCcCEEEeC
Confidence 4578899999999999999999998 4599999999853 457888877753 123579999864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0017 Score=54.31 Aligned_cols=38 Identities=32% Similarity=0.350 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~ 133 (229)
.++..|||++||+|..+.+.+..|. +++|+|+++.+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~ 271 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQ 271 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHH
Confidence 6889999999999999999999886 9999999987544
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.018 Score=49.30 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=62.8
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----CCCC
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----PFFD 146 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~~~~ 146 (229)
..+..+.....++++.+||-+|+|. |..+..+++. |..+|+++|.+++..+ ++..+-.++ ...+
T Consensus 177 ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~ 256 (371)
T 1f8f_A 177 TGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITD 256 (371)
T ss_dssp HHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred HHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcC
Confidence 3333343455678999999999886 7788888776 8767999998876322 222211111 0112
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+.+|+|+-..- ....+++..+.|++||+++++
T Consensus 257 gg~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 257 GGVNFALESTG-----SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp SCEEEEEECSC-----CHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEECCC-----CHHHHHHHHHHHhcCCEEEEe
Confidence 37999986321 134678889999999998754
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0085 Score=49.80 Aligned_cols=108 Identities=14% Similarity=-0.018 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCC-CC---CCCCceeEEEcccch
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHN-LP---FFDEAFDVAFTAHLA 158 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~-~~---~~~~~fD~V~~~~~~ 158 (229)
.+..+||+=+|||..+++....+ .+++.+|.++. ...+++.|... +. -+..+||+|+..--.
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 45678999999999999988865 69999999876 23466667533 11 224579999997322
Q ss_pred hh-hCHHHHHHHHHh--ccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 159 EA-LFPSRFVGEMER--TVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 159 ~~-~~~~~~l~~~~~--~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
+. .+..++++.+.+ .+.|+|.+++..+-......+.+.+-+++.+.
T Consensus 170 e~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 170 ERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS 218 (283)
T ss_dssp CSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence 21 235566666665 46799999999998776666677766665444
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.019 Score=49.79 Aligned_cols=91 Identities=20% Similarity=0.062 Sum_probs=61.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCCCCCCC---------CCCceeE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADPHNLPF---------FDEAFDV 151 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~~~~~~---------~~~~fD~ 151 (229)
...++++.+||-+|+|. |..+..+++. |..+|+++|.+++. .+++ |..+..+ ....+|+
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~~~~~g~g~Dv 257 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQIDQILGKPEVDC 257 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHHHHHSSSCEEE
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHHHHhCCCCCCE
Confidence 45678999999999977 7888888876 87689999988652 2222 2222111 1236999
Q ss_pred EEcccchh---------hhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAE---------ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~---------~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+-..-.. +..+...++++.+.|++||+++++
T Consensus 258 vid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 258 GVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp EEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred EEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 98642211 112345788899999999998744
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.029 Score=45.77 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL 131 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~ 131 (229)
..++..|||..||+|..+.+....|. +++|+|+++..
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~ 246 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEY 246 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHH
Confidence 37899999999999999999998876 99999998753
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.078 Score=44.17 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=59.0
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe--------EEEcCCCCCCCCCCceeE
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL--------VSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~--------~~~~d~~~~~~~~~~fD~ 151 (229)
...+..+ ....++++.+||-+|+|. |..+..+++. |. +|++++ +++..+ .+..|..++ .+.+|+
T Consensus 129 ~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v---~~g~Dv 202 (315)
T 3goh_A 129 LTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYREPSQV---TQKYFA 202 (315)
T ss_dssp HHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEESSGGGC---CSCEEE
T ss_pred HHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEcCHHHh---CCCccE
Confidence 3334444 556778999999999964 7778888877 88 999999 776322 111232222 568999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+-..-. ..+....+.|+|||+++++
T Consensus 203 v~d~~g~------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 203 IFDAVNS------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp EECC-------------TTGGGEEEEEEEEEE
T ss_pred EEECCCc------hhHHHHHHHhcCCCEEEEE
Confidence 9863211 1235678899999998866
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.1 Score=44.66 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=60.7
Q ss_pred HHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcC--CCCC-----CCCCCce
Q 027039 88 LQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRAD--PHNL-----PFFDEAF 149 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d--~~~~-----~~~~~~f 149 (229)
+.....++++.+||-+|+|. |..+..+++. |..+|+++|.+++..+ ++... ..++ ...++.+
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 44556678999999999875 7777777776 8778999999887332 22111 0111 0123478
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
|+|+-..- ....++...+.|++| |+++++
T Consensus 265 D~vid~~g-----~~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 265 DYSFECIG-----NVSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCC-----CHHHHHHHHHHhhccCCEEEEE
Confidence 99885321 234678889999997 998754
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.045 Score=46.95 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC------------CCeEEEcCCCCC
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------------LPLVSRADPHNL 142 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~------------~~~~~~~d~~~~ 142 (229)
++..|||||.|.|.++..|.+. ...+|+++|+++. .+.++++|+..+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 4689999999999999999986 3458999999854 456888898654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.11 Score=44.46 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=59.9
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-----C---CCCCcee
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-----P---FFDEAFD 150 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-----~---~~~~~fD 150 (229)
....++++.+||-+|+|. |..+..+++. |..+|+++|.++...+ ++..+-.++ . ..++.+|
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~D 255 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVD 255 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCC
Confidence 345678999999999876 7777777776 8778999998876221 221111111 0 2234799
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+|+-..- ....++.+.+.|++||+++++
T Consensus 256 vvid~~G-----~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 256 VVIECAG-----VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EEEECSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCC-----CHHHHHHHHHHhccCCEEEEE
Confidence 9986321 134678889999999998854
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.14 Score=43.05 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=58.9
Q ss_pred HHHHHhcccCCCCCeEEEEcCCC--ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC--------CCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGA--GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP--------FFD 146 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~ 146 (229)
...+.....++++.+||-+|+|+ |..+..++.. |. +|+++|.+++..+. ...|..+.. ...
T Consensus 133 ~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 133 WVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNG 211 (340)
T ss_dssp HHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred HHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCC
Confidence 33444556789999999999984 6777777766 87 99999988773321 011222111 123
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..+|+|+.+.-.. ...+..+.|++||+++++
T Consensus 212 ~g~Dvvid~~g~~------~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 212 IGADAAIDSIGGP------DGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp SCEEEEEESSCHH------HHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEECCCCh------hHHHHHHHhcCCCEEEEE
Confidence 4799998743221 123345899999998855
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.062 Score=46.40 Aligned_cols=93 Identities=18% Similarity=0.133 Sum_probs=61.9
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCCCC-CC------CCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADPHN-LP------FFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~~~-~~------~~~~~fD~V~ 153 (229)
...++++.+||-+|+|. |..+..+++. |..+|+++|.+++. .+.+..+-.+ +. .....+|+|+
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 34678999999999876 7788888876 87689999988762 2222211111 00 0123699999
Q ss_pred cccc----------hhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHL----------AEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~----------~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
-..- .++..+...+++..+.|++||+++++
T Consensus 260 d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred ECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 6521 12224556789999999999998744
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.041 Score=46.60 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=57.3
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe--------EEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL--------VSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~--------~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
..++++.+||-+|+|. |..+..+++. |. +|+++|.+++..+ .+..+...+ ...+|+|+-..-.
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~---~~~~D~vid~~g~--- 244 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFYTDPKQC---KEELDFIISTIPT--- 244 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEESSGGGC---CSCEEEEEECCCS---
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeecCCHHHH---hcCCCEEEECCCc---
Confidence 3678999999999876 7777777776 87 9999999887432 111222222 2279999853211
Q ss_pred CHHHHHHHHHhccccCcEEEEE
Q 027039 162 FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...++...+.|+|||+++++
T Consensus 245 --~~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 245 --HYDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp --CCCHHHHHTTEEEEEEEEEC
T ss_pred --HHHHHHHHHHHhcCCEEEEE
Confidence 12466788999999998855
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.25 Score=42.68 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=54.0
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC------CCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~fD~V~~~ 155 (229)
.++++.+||-+|+|. |..+..+++. |..+|+++|.++...+ ++..+-.++. .....+|+|+-.
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~ 289 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEA 289 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEEC
Confidence 578999999999875 6777777776 8779999998876322 2211111110 112369998853
Q ss_pred cchhhhCHHHHHHHHHhcc----ccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTV----KIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~L----kpgG~lil~ 183 (229)
. .. +...+..+.+.| ++||+++++
T Consensus 290 ~-g~---~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 290 T-GV---PQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp S-SC---HHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred C-CC---cHHHHHHHHHHHHhccCCCcEEEEe
Confidence 2 11 222344444444 999998854
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.058 Score=44.84 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=49.1
Q ss_pred CCeEEEcCCCC-CC-CCCCceeEEEcc--cch---------------h---hh-CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 131 LPLVSRADPHN-LP-FFDEAFDVAFTA--HLA---------------E---AL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 131 ~~~~~~~d~~~-~~-~~~~~fD~V~~~--~~~---------------~---~~-~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
...++++|..+ ++ +++++||+|+++ +.. . .+ ...++++++.++|||||.+++.++..
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 34577888766 22 457899999998 210 0 11 13467889999999999999887642
Q ss_pred C------c----ccH-HHHHHHHhcCceeEee
Q 027039 188 A------G----REI-KQIVELFRTSRFVDAA 208 (229)
Q Consensus 188 ~------~----~~~-~~l~~l~~~~~~~~~~ 208 (229)
. + .+. ..+..++...+|.-..
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred ccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 1 0 111 3466677766654433
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.039 Score=46.99 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=57.4
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCC---CCC-----CCCCCceeE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADP---HNL-----PFFDEAFDV 151 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~---~~~-----~~~~~~fD~ 151 (229)
...++++.+||-+|+|. |..+..++.. |..+|+++|.++...+ ++..+. .+. ...++.+|+
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~ 245 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 245 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCE
Confidence 44678999999999876 7777777775 7768999998876221 221110 000 000146899
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+-..- ....++...+.|+|||+++++
T Consensus 246 vid~~g-----~~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 246 TIECTG-----AEASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp EEECSC-----CHHHHHHHHHHSCTTCEEEEC
T ss_pred EEECCC-----ChHHHHHHHHHhcCCCEEEEE
Confidence 886321 124567888999999998754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.067 Score=45.36 Aligned_cols=89 Identities=11% Similarity=-0.010 Sum_probs=59.3
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC------CCCCceeEE
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAFDVA 152 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~fD~V 152 (229)
....++++.+||-+|+|. |..+..+++. |..+|+++|.+++..+ ++..+-.++. .....+|+|
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v 239 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKV 239 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEE
Confidence 445678999999999876 7778888877 7768999998876222 2211111110 122369999
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+-..- ....+++..+.|+|||+++++
T Consensus 240 ~d~~g-----~~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 240 VIAGG-----DVHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp EECSS-----CTTHHHHHHHHEEEEEEEEEC
T ss_pred EECCC-----ChHHHHHHHHHHhcCCEEEEe
Confidence 85321 124577888999999998854
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.062 Score=45.96 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=61.0
Q ss_pred HHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCC--CCC-----CCCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADP--HNL-----PFFD 146 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~--~~~-----~~~~ 146 (229)
+..+.....++++.+||-+|+|. |..+..+++. |..+|+++|.+++..+ ++..+- .++ ...+
T Consensus 180 ~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhC
Confidence 33344455678999999999875 7777777776 8768999998876332 221110 111 0112
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
+.+|+|+-..- ....++...+.|+++ |+++++
T Consensus 260 gg~Dvvid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 260 GGVDYAVECAG-----RIETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCC-----CHHHHHHHHHHHhcCCCEEEEE
Confidence 47899886321 134678888999999 998754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.084 Score=45.14 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=59.6
Q ss_pred HHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCC----CC-----CCCCc
Q 027039 87 HLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHN----LP-----FFDEA 148 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~----~~-----~~~~~ 148 (229)
.+.....++++.+||-+|+|. |..+..+++. |..+|+++|.+++..++ ...|..+ +. ..++.
T Consensus 183 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 183 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCC
Confidence 333445678999999999865 6777777766 76689999988773321 1112211 10 11236
Q ss_pred eeEEEcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 149 FDVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 149 fD~V~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
+|+|+-..- ....++...+.|++| |+++++
T Consensus 263 ~D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 263 VDFSLECVG-----NVGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp BSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCEEEECCC-----CHHHHHHHHHHhhcCCcEEEEE
Confidence 899886321 134678889999999 998754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.081 Score=40.78 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=55.1
Q ss_pred hcccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCe-------EEEcCCCCCC--------CCCCceeE
Q 027039 90 GKSLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPL-------VSRADPHNLP--------FFDEAFDV 151 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~-------~~~~d~~~~~--------~~~~~fD~ 151 (229)
....++++.+||..|++ .|.....++.. |. +|+++|.+++..+ -...|..+.. ...+.+|+
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEE
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeE
Confidence 34467899999999953 35555555554 86 8999998765221 0112322211 11246999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
++.+.- ...+++..+.|+|||+++++
T Consensus 111 vi~~~g------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 111 VLNSLA------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp EEECCC------THHHHHHHHTEEEEEEEEEC
T ss_pred EEECCc------hHHHHHHHHHhccCCEEEEE
Confidence 997532 24578888999999998754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.086 Score=45.10 Aligned_cols=94 Identities=13% Similarity=0.209 Sum_probs=60.4
Q ss_pred HHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEE-------EcCCCC--CC-------CCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVS-------RADPHN--LP-------FFD 146 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~-------~~d~~~--~~-------~~~ 146 (229)
+..+.....++++.+||-+|+|. |..+..+++. |..+|+++|.+++..++. ..|..+ .. ..+
T Consensus 184 ~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 184 YGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTA 263 (376)
T ss_dssp HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhC
Confidence 33344455678999999999875 6777777776 776899999887733211 112111 00 012
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
+.+|+|+-..- ....++...+.|++| |+++++
T Consensus 264 ~g~Dvvid~~G-----~~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 264 GGVDYSLDCAG-----TAQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SCBSEEEESSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCccEEEECCC-----CHHHHHHHHHHhhcCCCEEEEE
Confidence 36898885321 134678889999999 998754
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.12 Score=42.75 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=32.3
Q ss_pred EcCCCCCCCCCCceeEEEcc----cchhh-------h-CHHHHHHHHHhccccCcEEEEEeecCC
Q 027039 136 RADPHNLPFFDEAFDVAFTA----HLAEA-------L-FPSRFVGEMERTVKIGGVCMVLMEECA 188 (229)
Q Consensus 136 ~~d~~~~~~~~~~fD~V~~~----~~~~~-------~-~~~~~l~~~~~~LkpgG~lil~~~~~~ 188 (229)
.+|+...+ ..+.+|+|+++ ...++ . ...-++..+.++|+|||.+++-+-..+
T Consensus 195 ~lDfg~p~-~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga 258 (320)
T 2hwk_A 195 RLDLGIPG-DVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA 258 (320)
T ss_dssp CGGGCSCT-TSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC
T ss_pred ccccCCcc-ccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 55555533 23679999998 12222 2 122256778899999999886555433
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.035 Score=46.88 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=58.6
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC--C--CCCceeEEEc
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP--F--FDEAFDVAFT 154 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~--~--~~~~fD~V~~ 154 (229)
....++++.+||-+|+|. |..+..+++. |. +|+++|.+++..+ ++..+-.+.. . ..+.+|+|+-
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid 238 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLV 238 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEE
Confidence 344678999999999986 8888888876 87 9999999876322 2211111110 0 0136888875
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
... ....++...+.|+|||+++++
T Consensus 239 ~~g-----~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 239 TAV-----SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred eCC-----CHHHHHHHHHHhccCCEEEEe
Confidence 321 234678888999999998854
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.082 Score=45.10 Aligned_cols=93 Identities=14% Similarity=0.007 Sum_probs=60.5
Q ss_pred HHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC------CCCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP------FFDE 147 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~ 147 (229)
+..+.....++++.+||-+|+|. |..+..+++. |. +|+++|.+++..+ ++..+..++. ....
T Consensus 178 ~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 178 WFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDR 256 (363)
T ss_dssp HHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCC
Confidence 33343456678999999999876 7777777776 87 9999998865221 2221111110 1233
Q ss_pred ceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 148 ~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+|+|+-..- ...+....+.|+|||+++++-
T Consensus 257 g~D~vid~~g------~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 257 GADHILEIAG------GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp CEEEEEEETT------SSCHHHHHHHEEEEEEEEEEC
T ss_pred CceEEEECCC------hHHHHHHHHHhhcCCEEEEEe
Confidence 7999986432 124667888999999988653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.15 E-value=0.077 Score=45.37 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=59.5
Q ss_pred HHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCC----CC-----CCCCc
Q 027039 87 HLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHN----LP-----FFDEA 148 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~----~~-----~~~~~ 148 (229)
.+.....++++.+||-+|+|. |..+..++.. |..+|+++|.+++..++ ...|..+ +. ..++.
T Consensus 182 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 182 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred HHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCC
Confidence 344455678999999999875 6777777765 76689999988763321 0112111 10 11246
Q ss_pred eeEEEcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 149 FDVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 149 fD~V~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
+|+|+-..- ....++...+.|++| |+++++
T Consensus 262 ~D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 262 VDFSFEVIG-----RLDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp BSEEEECSC-----CHHHHHHHHHHBCTTTCEEEEC
T ss_pred CcEEEECCC-----CHHHHHHHHHHhhcCCcEEEEe
Confidence 899886321 134577888999999 998754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.087 Score=44.98 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=60.0
Q ss_pred HHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCC----C-----CCCCCc
Q 027039 87 HLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHN----L-----PFFDEA 148 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~----~-----~~~~~~ 148 (229)
.+.....++++.+||-+|+|. |..+..+++. |..+|+++|.+++..++ ...|..+ + ...++.
T Consensus 181 ~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred HHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCC
Confidence 344455678999999999875 6777777776 87689999988773321 0112111 1 011236
Q ss_pred eeEEEcccchhhhCHHHHHHHHHhccccC-cEEEEE
Q 027039 149 FDVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVL 183 (229)
Q Consensus 149 fD~V~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~ 183 (229)
+|+|+-..- ....++...+.|+++ |+++++
T Consensus 261 ~D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 261 VDYSFECIG-----NVKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp BSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCEEEECCC-----cHHHHHHHHHhhccCCcEEEEE
Confidence 899886321 134578889999999 998754
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.28 Score=45.50 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-------------CCCeEEEecCCCC-------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-------------GVADVTGVELMDS------------------------------- 130 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-------------g~~~v~~vD~s~~------------------------------- 130 (229)
++.-+|+|+|.|+|.......+. ...+++.+|..|.
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 34568999999999877665432 1146888887553
Q ss_pred ------------CCeEEEcCCCC-CC-CC---CCceeEEEcccchhhhCH----HHHHHHHHhccccCcEEEEEeecCCc
Q 027039 131 ------------LPLVSRADPHN-LP-FF---DEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAG 189 (229)
Q Consensus 131 ------------~~~~~~~d~~~-~~-~~---~~~fD~V~~~~~~~~~~~----~~~l~~~~~~LkpgG~lil~~~~~~~ 189 (229)
.+++..+|+.+ ++ +. ++.+|.++...+.-..+| .+++..+.+.++|||.+. +....
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~--t~~~~- 213 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS--TFTAA- 213 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE--ESCCC-
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE--eccCc-
Confidence 11145556543 22 21 468999998755443333 789999999999999955 22211
Q ss_pred ccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 190 REIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 190 ~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
..+.+.+.+.+|. +..++..+.+
T Consensus 214 ---~~vr~~l~~aGf~-~~~~~~~~~k 236 (689)
T 3pvc_A 214 ---GFVRRGLQQAGFN-VTKVKGFGQK 236 (689)
T ss_dssp ---HHHHHHHHHTTCE-EEEEECSSSS
T ss_pred ---HHHHHHHHhCCeE-EEeccCCCcc
Confidence 3456666677764 4445555544
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.31 E-value=0.32 Score=41.17 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=56.7
Q ss_pred cCCCC------CeEEEEcCCC-Chhh-HHHH-hC-CCCeEEEecCCCC---CCe--------EEEcCCCCCCCC-----C
Q 027039 93 LLFNH------SKVLCVSAGA-GHEV-MAFN-SI-GVADVTGVELMDS---LPL--------VSRADPHNLPFF-----D 146 (229)
Q Consensus 93 ~~~~~------~~vLDiG~G~-G~~~-~~l~-~~-g~~~v~~vD~s~~---~~~--------~~~~d~~~~~~~-----~ 146 (229)
.++++ .+||-+|+|. |..+ ..++ +. |..+|+++|.+++ ..+ .+ |..+..+. +
T Consensus 163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~~~~~~~i~~~~ 240 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV--DSRQTPVEDVPDVY 240 (357)
T ss_dssp HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETTTSCGGGHHHHS
T ss_pred CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCCccCHHHHHHhC
Confidence 45788 9999999865 7777 7788 65 8745999998876 322 22 33321111 1
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+.+|+|+-..- ....+++..+.|++||+++++-
T Consensus 241 gg~Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 241 EQMDFIYEATG-----FPKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp CCEEEEEECSC-----CHHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCEEEECCC-----ChHHHHHHHHHHhcCCEEEEEe
Confidence 36899885321 1235778889999999987543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.14 E-value=0.26 Score=41.49 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=50.1
Q ss_pred CCeEEEcCCCC-CC-CCCCceeEEEcc--c-ch-----------hhh-CHHHHHHHHHhccccCcEEEEEeecC--Cc--
Q 027039 131 LPLVSRADPHN-LP-FFDEAFDVAFTA--H-LA-----------EAL-FPSRFVGEMERTVKIGGVCMVLMEEC--AG-- 189 (229)
Q Consensus 131 ~~~~~~~d~~~-~~-~~~~~fD~V~~~--~-~~-----------~~~-~~~~~l~~~~~~LkpgG~lil~~~~~--~~-- 189 (229)
...++++|..+ +. +++++||+|++. + .. ... ...+.+.++.++|||||.+++.++.. .+
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~ 93 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP 93 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCc
Confidence 34567788654 33 557899999987 2 11 111 35778899999999999999887754 11
Q ss_pred ----ccHHHHHHHHhcCceeE
Q 027039 190 ----REIKQIVELFRTSRFVD 206 (229)
Q Consensus 190 ----~~~~~l~~l~~~~~~~~ 206 (229)
+....+.+++...++.-
T Consensus 94 ~~~~~~~~~i~~~~~~~Gf~~ 114 (323)
T 1boo_A 94 ARSIYNFRVLIRMIDEVGFFL 114 (323)
T ss_dssp EECCHHHHHHHHHHHTTCCEE
T ss_pred ccccchHHHHHHHHHhCCCEE
Confidence 23445666677666543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.3 Score=40.78 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=58.2
Q ss_pred HHhcccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC------CCCCce
Q 027039 88 LQGKSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAF 149 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~f 149 (229)
+.....++++.+||-.|+ | .|..+..++.. |. +|+++|.+++..+ ++..+-.++. .....+
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCc
Confidence 334456789999999993 3 37777777766 87 9999998765221 2211111110 123479
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
|+|+.+.-. ..+....+.|++||+++++-
T Consensus 211 Dvvid~~g~------~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 211 PVVYDGVGQ------DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEEESSCG------GGHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCCh------HHHHHHHHHhcCCCEEEEEe
Confidence 999864321 35677889999999988553
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.11 Score=44.10 Aligned_cols=63 Identities=8% Similarity=-0.098 Sum_probs=47.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC-----------CeEEEcCCCCCC--CC----CCceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL-----------PLVSRADPHNLP--FF----DEAFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~-----------~~~~~~d~~~~~--~~----~~~fD~V~ 153 (229)
.++++..++|..+|.|..+.++++. +.++|+|+|.++.+ +.+++++..++. +. .+++|.|+
T Consensus 54 ~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~g~~~~vDgIL 133 (347)
T 3tka_A 54 NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGIL 133 (347)
T ss_dssp CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHTTCTTCEEEEE
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCCcccEEE
Confidence 5688999999999999999999987 46799999999763 346666665542 00 13588888
Q ss_pred cc
Q 027039 154 TA 155 (229)
Q Consensus 154 ~~ 155 (229)
.+
T Consensus 134 fD 135 (347)
T 3tka_A 134 LD 135 (347)
T ss_dssp EE
T ss_pred EC
Confidence 76
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.21 Score=41.87 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=60.9
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCeEE--------EcCCCCCC-------
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPLVS--------RADPHNLP------- 143 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~~~--------~~d~~~~~------- 143 (229)
...+..+.....++++.+||-.|++ .|..+..++.. |. +|+++|.+++..+.. ..|..+..
T Consensus 135 ~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 213 (336)
T 4b7c_A 135 MTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKR 213 (336)
T ss_dssp HHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHH
Confidence 3444444455677899999999983 36677776665 87 999999876522211 11222111
Q ss_pred CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 144 FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...+.+|+|+.+.-. ..+....+.|++||+++++
T Consensus 214 ~~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 214 ECPKGIDVFFDNVGG------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HCTTCEEEEEESSCH------HHHHHHHTTEEEEEEEEEC
T ss_pred hcCCCceEEEECCCc------chHHHHHHHHhhCCEEEEE
Confidence 113469999874321 3678888999999998854
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=0.095 Score=43.98 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=58.7
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCe-------EEEcCCCC-CC-------C
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPL-------VSRADPHN-LP-------F 144 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~-------~~~~d~~~-~~-------~ 144 (229)
..+..+.....++++.+||-.|++ .|..+..++.. |. +|+++|.+++..+ -...|..+ -. .
T Consensus 132 ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~ 210 (333)
T 1v3u_A 132 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKA 210 (333)
T ss_dssp HHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHH
Confidence 333334344567899999999983 45665555554 87 9999998754211 01123322 11 1
Q ss_pred CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..+.+|+++.+.-. ..+++..+.|++||+++++
T Consensus 211 ~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 211 SPDGYDCYFDNVGG------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp CTTCEEEEEESSCH------HHHHHHHTTEEEEEEEEEC
T ss_pred hCCCCeEEEECCCh------HHHHHHHHHHhcCCEEEEE
Confidence 12479999875422 2477888999999998754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.11 Score=44.13 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=58.1
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE--------E--EcCC---CCCC------CCCCc
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV--------S--RADP---HNLP------FFDEA 148 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~--------~--~~d~---~~~~------~~~~~ 148 (229)
....++++.+||-+|+|. |..+..+++. |...|+++|.+++..++ + ..+. .++. .....
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g 252 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIE 252 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCC
Confidence 345678999999999876 7777778776 87569999988753221 0 1110 0000 11346
Q ss_pred eeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 149 fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+|+|+-..- ....++...+.|++||+++++
T Consensus 253 ~Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 253 PAVALECTG-----VESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CSEEEECSC-----CHHHHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECCC-----ChHHHHHHHHHhcCCCEEEEE
Confidence 898886321 124677888999999998854
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.17 Score=43.62 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=46.9
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------CeEEEcCCCCCCC--------CCCceeEEEcc
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------PLVSRADPHNLPF--------FDEAFDVAFTA 155 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------~~~~~~d~~~~~~--------~~~~fD~V~~~ 155 (229)
.+++|+-||.|.++..+...|+..+.++|+++.. ..++.+|+.++.. ....+|+|+..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG 78 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence 5899999999999999998898778899998762 3467788887631 24679999976
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=1.1 Score=36.58 Aligned_cols=113 Identities=8% Similarity=0.096 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--------CCCeEEEecCCCCCC----------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--------GVADVTGVELMDSLP---------------------------------- 132 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--------g~~~v~~vD~s~~~~---------------------------------- 132 (229)
.-+..|+|+|+-.|.....++.. ...++++.|.=+..+
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 55779999999999887776542 246899998433322
Q ss_pred -------------eEEEcCCCC-CC-----CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCC---cc
Q 027039 133 -------------LVSRADPHN-LP-----FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECA---GR 190 (229)
Q Consensus 133 -------------~~~~~d~~~-~~-----~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~---~~ 190 (229)
.++.|++.+ +| .+..+||+|+... .....-...++.+...|+|||.++ ++... ..
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D~Y~~t~~~le~~~p~l~~GGvIv--~DD~~~~~w~ 224 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-DLYEPTKAVLEAIRPYLTKGSIVA--FDELDNPKWP 224 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-CCHHHHHHHHHHHGGGEEEEEEEE--ESSTTCTTCT
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-cccchHHHHHHHHHHHhCCCcEEE--EcCCCCCCCh
Confidence 233444332 11 1234678877642 111223567888999999999954 44432 11
Q ss_pred cHHHHHHHHhcCceeEeeee
Q 027039 191 EIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 191 ~~~~l~~l~~~~~~~~~~~~ 210 (229)
...+-.+.|-...-++++.+
T Consensus 225 G~~~A~~ef~~~~~~~i~~~ 244 (257)
T 3tos_A 225 GENIAMRKVLGLDHAPLRLL 244 (257)
T ss_dssp HHHHHHHHHTCTTSSCCEEC
T ss_pred HHHHHHHHHHhhCCCeEEEc
Confidence 33333334444444445444
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.24 E-value=0.58 Score=39.75 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=54.9
Q ss_pred CCCeEEEEc-CCC-ChhhHHHHhC-CCCeEEEecCCCCCCe--------EEEcCCCC-C-----CCCCCceeEEEcccch
Q 027039 96 NHSKVLCVS-AGA-GHEVMAFNSI-GVADVTGVELMDSLPL--------VSRADPHN-L-----PFFDEAFDVAFTAHLA 158 (229)
Q Consensus 96 ~~~~vLDiG-~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~--------~~~~d~~~-~-----~~~~~~fD~V~~~~~~ 158 (229)
++.+||-+| +|. |..+..+++. +..+|+++|.+++..+ .+. |..+ + ....+.+|+|+-..-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi-~~~~~~~~~v~~~~~~g~Dvvid~~g- 248 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVI-DHSKPLAAEVAALGLGAPAFVFSTTH- 248 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEE-CTTSCHHHHHHTTCSCCEEEEEECSC-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEE-eCCCCHHHHHHHhcCCCceEEEECCC-
Confidence 788999998 554 8888888875 4459999999865221 111 1111 0 112357999886321
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEE
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....++++.+.|++||+++++
T Consensus 249 ----~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 ----TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ----HHHHHHHHHHHSCTTCEEEEC
T ss_pred ----chhhHHHHHHHhcCCCEEEEE
Confidence 235678889999999998855
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.22 Score=37.58 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------CCeEEEcCCCC-CCC----CCCceeEEEcccchhh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------LPLVSRADPHN-LPF----FDEAFDVAFTAHLAEA 160 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------~~~~~~~d~~~-~~~----~~~~fD~V~~~~~~~~ 160 (229)
....-|||+|-|.|..-..+.+. +..+++.+|-.-. .-.++++|+.+ +|. ...+.-++.+. +..+
T Consensus 39 ~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD-~G~g 117 (174)
T 3iht_A 39 GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATASLVHAD-LGGH 117 (174)
T ss_dssp TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEEEEEC-CCCS
T ss_pred CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceEEEEee-cCCC
Confidence 45678999999999999999998 7779999987633 23488999876 332 13445555543 1111
Q ss_pred h---C---HHHHHHHHHhccccCcEEE
Q 027039 161 L---F---PSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 161 ~---~---~~~~l~~~~~~LkpgG~li 181 (229)
. + ...+-.-+..+|.|||.++
T Consensus 118 ~~~~d~a~a~~lsplI~~~la~GGi~v 144 (174)
T 3iht_A 118 NREKNDRFARLISPLIEPHLAQGGLMV 144 (174)
T ss_dssp CHHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred CcchhHHHHHhhhHHHHHHhcCCcEEE
Confidence 1 1 1223345678899999954
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.27 Score=41.43 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=60.3
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC------C
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP------F 144 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~ 144 (229)
..+..+.....++++.+||-.|++ .|..+..++.. |. +|++++.+++..+ ++..+ .++. .
T Consensus 146 ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~ 223 (342)
T 4eye_A 146 TMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREAT 223 (342)
T ss_dssp HHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHh
Confidence 334444455677899999999973 36777777766 87 9999998776322 22222 2211 1
Q ss_pred CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+|+|+.+.-. ..+....+.|++||+++++
T Consensus 224 ~~~g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 224 GGAGVDMVVDPIGG------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp TTSCEEEEEESCC--------CHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEECCch------hHHHHHHHhhcCCCEEEEE
Confidence 12369999864321 2467788999999998854
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=0.094 Score=44.25 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=57.7
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC-----C-CCCceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP-----F-FDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~-----~-~~~~fD~V~~ 154 (229)
..++++.+||-+|+|. |..+..+++. |..+|+++|.+++..+ ++..+- +.. . ....+|+|+-
T Consensus 167 ~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~v~~~t~g~g~d~v~d 245 (345)
T 3jv7_A 167 PLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA-GAADAIRELTGGQGATAVFD 245 (345)
T ss_dssp GGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECST-THHHHHHHHHGGGCEEEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCC-cHHHHHHHHhCCCCCeEEEE
Confidence 3678999999999976 7777788776 5569999999876322 222111 110 0 1236888885
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..- ....++...+.|++||+++++
T Consensus 246 ~~G-----~~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 246 FVG-----AQSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp SSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 321 134678899999999998854
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.74 E-value=0.21 Score=41.97 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=55.3
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCCCCC------CceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLPFFD------EAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~~~~------~~fD~V~~~~~ 157 (229)
.++++.+||-+|+|. |..+..++.. |. +|+++|.++...+. ...|..+..+.+ +.+|+|+...-
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g 239 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 239 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCC
Confidence 568999999999964 6666666665 87 99999988653221 112322211100 36899886421
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....++...+.|++||+++++
T Consensus 240 -----~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 240 -----SKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp -----CHHHHHHHHHHEEEEEEEEEC
T ss_pred -----CHHHHHHHHHHhhcCCEEEEe
Confidence 124577888999999998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.72 E-value=0.59 Score=39.42 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=56.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCC-CCCC------CC---CCce
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADP-HNLP------FF---DEAF 149 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~-~~~~------~~---~~~f 149 (229)
...++++.+||-+|+|. |..+..++.. |. +|+++|.+++..+ ++..+- .+.. .. ...+
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~ 241 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 241 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCC
Confidence 34578999999999875 6777777765 87 6999998865221 222110 1110 01 2468
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+|+-..- ....++...+.|+|||+++++
T Consensus 242 D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 242 NVTIDCSG-----NEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp SEEEECSC-----CHHHHHHHHHHSCTTCEEEEC
T ss_pred CEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 99886421 123577888999999998754
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.93 Score=41.83 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=41.9
Q ss_pred CCceeEEEcccchhhhCH----HHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCe
Q 027039 146 DEAFDVAFTAHLAEALFP----SRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSN 216 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~----~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 216 (229)
+..||+++...+....+| .++++++.+.++|||.+. +.... ..+.+.+.+.+|. +..+...|.+
T Consensus 177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~--t~~~~----~~vr~~L~~aGf~-v~~~~~~g~k 244 (676)
T 3ps9_A 177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA--TFTSA----GFVRRGLQDAGFT-MQKRKGFGRK 244 (676)
T ss_dssp TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE--ESCCC----HHHHHHHHHHTCE-EEEEECSTTC
T ss_pred CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE--eccCc----HHHHHHHHhCCeE-EEeccccccc
Confidence 467999998765544444 789999999999999955 22211 3455566666653 4445555544
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.48 E-value=0.51 Score=39.93 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=58.2
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC--------C
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP--------F 144 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~ 144 (229)
..+..+.....++++.+||-.|++ .|..+..++.. |. +|+++|.+++..+. ...|..+.. .
T Consensus 157 ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~ 235 (351)
T 1yb5_A 157 TAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYV 235 (351)
T ss_dssp HHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHc
Confidence 333334344567899999999973 35666666655 87 89999987652210 111222211 1
Q ss_pred CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+|+|+.+.- ...+....+.|++||+++++
T Consensus 236 ~~~~~D~vi~~~G------~~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 236 GEKGIDIIIEMLA------NVNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp CTTCEEEEEESCH------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCcEEEEECCC------hHHHHHHHHhccCCCEEEEE
Confidence 1236999987532 13467788999999998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=0.55 Score=39.52 Aligned_cols=89 Identities=18% Similarity=0.073 Sum_probs=56.9
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC--------CCCCceeEE
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVA 152 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V 152 (229)
....+ ++.+||-+|+|. |..+..++.. |..+|+++|.+++..++ ...|..+.. .....+|+|
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~v 240 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVF 240 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEE
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEE
Confidence 34456 899999999964 6666677665 76689999988652220 011222111 112369999
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+...- ....++...+.|+++|+++.+-
T Consensus 241 id~~g-----~~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 241 LEFSG-----APKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EECSC-----CHHHHHHHHHHEEEEEEEEECC
T ss_pred EECCC-----CHHHHHHHHHHHhcCCEEEEEc
Confidence 86421 1346788889999999987543
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.17 Score=42.61 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=55.5
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEE------EcCCCCCCC-------CCCceeEEEcc
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVS------RADPHNLPF-------FDEAFDVAFTA 155 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~------~~d~~~~~~-------~~~~fD~V~~~ 155 (229)
...+ ++.+||-+|+|. |..+..++.. |..+|+++|.+++..++. ..|..+..+ ....+|+|+-.
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEF 238 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEEC
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEEC
Confidence 4456 899999999864 6667777765 766899999876522211 112221110 02368998864
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.- ....++...+.|+++|+++++
T Consensus 239 ~g-----~~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 239 SG-----NEAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred CC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 21 134578888999999998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.70 E-value=0.29 Score=41.83 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=54.8
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCC-C-CCCCCceeEEEcccchh
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHN-L-PFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~-~-~~~~~~fD~V~~~~~~~ 159 (229)
.++++.+||-+|+|. |..+..+++. |. +|+++|.+++..+ ++..+-.+ . .. .+.+|+|+-..-.
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~-~~g~Dvvid~~g~- 267 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAH-LKSFDFILNTVAA- 267 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTT-TTCEEEEEECCSS-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHh-hcCCCEEEECCCC-
Confidence 568999999999875 7777777775 77 7999998876322 22111000 0 01 1479999864211
Q ss_pred hhCHHHHHHHHHhccccCcEEEEE
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...++...+.|++||+++++
T Consensus 268 ----~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 268 ----PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp ----CCCHHHHHTTEEEEEEEEEC
T ss_pred ----HHHHHHHHHHhccCCEEEEe
Confidence 12356778899999998744
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.58 E-value=0.12 Score=44.29 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=56.2
Q ss_pred ccc-CCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcC---CCCC-----CC-CCCce
Q 027039 91 KSL-LFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRAD---PHNL-----PF-FDEAF 149 (229)
Q Consensus 91 ~~~-~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d---~~~~-----~~-~~~~f 149 (229)
... ++++.+||-+|+|. |..+..+++. |..+|+++|.+++..+ ++..+ -.++ .. ....+
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~ 268 (380)
T 1vj0_A 189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGA 268 (380)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCC
Confidence 345 78999999999764 6777777766 7459999998865222 22211 0010 01 12369
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+|+-..- ....++...+.|++||+++++
T Consensus 269 Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 269 DFILEATG-----DSRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp EEEEECSS-----CTTHHHHHHHHEEEEEEEEEC
T ss_pred cEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 99986421 123567788999999998754
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=89.53 E-value=0.1 Score=44.42 Aligned_cols=108 Identities=8% Similarity=0.061 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCChhhHHHHhCC--CCeEEEecCCCCC----------CeEEEcCCCCCCC---CCCceeEEEcccc----
Q 027039 97 HSKVLCVSAGAGHEVMAFNSIG--VADVTGVELMDSL----------PLVSRADPHNLPF---FDEAFDVAFTAHL---- 157 (229)
Q Consensus 97 ~~~vLDiG~G~G~~~~~l~~~g--~~~v~~vD~s~~~----------~~~~~~d~~~~~~---~~~~fD~V~~~~~---- 157 (229)
..+++|+-||.|.++..+...| +..+.++|+++.. ..++.+|+.++.. +...+|+++...-
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3589999999999999999888 5579999998762 2367888887641 1126899998611
Q ss_pred --h---hhh-CHH-HHHH---HHHhccc--cCcEEEEEeec-CCcccHHHHHHHHhcCce
Q 027039 158 --A---EAL-FPS-RFVG---EMERTVK--IGGVCMVLMEE-CAGREIKQIVELFRTSRF 204 (229)
Q Consensus 158 --~---~~~-~~~-~~l~---~~~~~Lk--pgG~lil~~~~-~~~~~~~~l~~l~~~~~~ 204 (229)
. ... ++. .++. ++.+.++ |.-.++=.|.. ........+.+.+...+.
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY 141 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGF 141 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTE
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCC
Confidence 1 011 222 2344 3444455 65443322433 123456667777776554
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=0.37 Score=40.31 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=56.2
Q ss_pred hcccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC------CCCCceeE
Q 027039 90 GKSLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAFDV 151 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~fD~ 151 (229)
....++++.+||-+|++ -|..+..++.. |. +|+++|.+++..+ ++..+-.+.. .....+|+
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~ 220 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDA 220 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceE
Confidence 34467899999999943 36677777665 87 9999998765221 2211111110 11346999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+.+.-. ..++...+.|++||+++++
T Consensus 221 vid~~g~------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 221 SFDSVGK------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp EEECCGG------GGHHHHHHHEEEEEEEEEC
T ss_pred EEECCCh------HHHHHHHHHhccCCEEEEE
Confidence 9975321 3567788899999998855
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=0.73 Score=39.09 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=56.7
Q ss_pred cccCCCCCeEEEEc--CCCChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC-----CCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVS--AGAGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP-----FFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG--~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~-----~~~~~fD~V~ 153 (229)
...++++.+||-.| .|.|..+..++.. |. +|+++|.+++..+ ++..+-.++. ...+.+|+|+
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vi 236 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVY 236 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEE
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEE
Confidence 34568999999999 3457777777766 87 8999998765211 2211111110 1124699998
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+.-. ..++.+.+.|+++|+++++-
T Consensus 237 d~~g~------~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 237 ESVGG------AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp ECSCT------HHHHHHHHHEEEEEEEEECC
T ss_pred ECCCH------HHHHHHHHHHhcCCEEEEEe
Confidence 64321 46778889999999987543
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=89.15 E-value=0.31 Score=42.43 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCCChhhHHHH-hC-C-CCeEEEecCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFN-SI-G-VADVTGVELMDS 130 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~-~~-g-~~~v~~vD~s~~ 130 (229)
++++..++|||++.|..+..++ .. + .++|+++|+++.
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~ 263 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRI 263 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 3788999999999999999887 33 3 369999999986
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=0.78 Score=38.41 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=53.1
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHh-CCCCeEEEecCCCCCCe---------EEEcCCCCCC------CCCCceeEEE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAFDVAF 153 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~-~g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~fD~V~ 153 (229)
....+++.+||=+|+|+ |..+..++. .+..+|+++|.+++..+ ++...-.+.. .....+|.++
T Consensus 158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~ 237 (348)
T 4eez_A 158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAI 237 (348)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred ccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEE
Confidence 34568999999999987 344444444 45559999999876221 2211111110 1123466655
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.... ....+....+.++++|+++++
T Consensus 238 ~~~~-----~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 238 VCAV-----ARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp ECCS-----CHHHHHHHHHTEEEEEEEEEC
T ss_pred Eecc-----CcchhheeheeecCCceEEEE
Confidence 4221 234677888999999998755
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=88.69 E-value=0.76 Score=38.33 Aligned_cols=107 Identities=11% Similarity=0.125 Sum_probs=68.2
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------CeEEEcCCCCCCCC-CCceeEEEcc------cchh--
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------PLVSRADPHNLPFF-DEAFDVAFTA------HLAE-- 159 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------~~~~~~d~~~~~~~-~~~fD~V~~~------~~~~-- 159 (229)
++|+|+=||.|-+...+.+.|+.-+.++|+++.. -.++.+|+.++... -..+|+++.. ....
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~ 80 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL 80 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence 4799999999999999988899788899999883 34778898876421 1468999976 1111
Q ss_pred -hh-CHH-HHHH---HHHhccccCcEEEEEeec----CCcccHHHHHHHHhcCce
Q 027039 160 -AL-FPS-RFVG---EMERTVKIGGVCMVLMEE----CAGREIKQIVELFRTSRF 204 (229)
Q Consensus 160 -~~-~~~-~~l~---~~~~~LkpgG~lil~~~~----~~~~~~~~l~~l~~~~~~ 204 (229)
.. ++. .++. ++.+.+||.-.++=-|.. .....+..+.+.+.+.+-
T Consensus 81 ~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY 135 (331)
T 3ubt_Y 81 RGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGY 135 (331)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTE
T ss_pred cCCCCchhHHHHHHHHHHhccCCeEEEeeeecccccccccchhhhhhhhhccCCc
Confidence 11 332 2333 445557887554322322 123356666666665443
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.44 E-value=0.73 Score=38.91 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=58.5
Q ss_pred HHHHHHhcccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC-----CCC
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP-----FFD 146 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~-----~~~ 146 (229)
.+..+.....++++.+||-.|+ | -|..+..++.. |. +|+++|.+++..+ ++..+-.+.. ...
T Consensus 155 a~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 4dup_A 155 VWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETG 233 (353)
T ss_dssp HHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhC
Confidence 3333445566789999999954 3 36677777665 87 8999998765221 2211111110 013
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+.+|+|+.+.-. ..+....+.|++||+++++-
T Consensus 234 ~g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 234 QGVDIILDMIGA------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp SCEEEEEESCCG------GGHHHHHHTEEEEEEEEECC
T ss_pred CCceEEEECCCH------HHHHHHHHHhccCCEEEEEE
Confidence 469999875322 24677888999999987553
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=88.25 E-value=1.3 Score=37.18 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=52.4
Q ss_pred CCCeEEEEc-CCC-ChhhHHHHhC-CCCeEEEecCCCCCCe--------EEEcCCCC-C-----CCCCCceeEEEcccch
Q 027039 96 NHSKVLCVS-AGA-GHEVMAFNSI-GVADVTGVELMDSLPL--------VSRADPHN-L-----PFFDEAFDVAFTAHLA 158 (229)
Q Consensus 96 ~~~~vLDiG-~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~--------~~~~d~~~-~-----~~~~~~fD~V~~~~~~ 158 (229)
++.+||-+| +|. |..+..++.. |. +|+++|.+++..+ .+ .|..+ + ....+.+|+|+-..-
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~~~~g~Dvv~d~~g- 226 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIV-LNHKESLLNQFKTQGIELVDYVFCTFN- 226 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEE-ECTTSCHHHHHHHHTCCCEEEEEESSC-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEE-EECCccHHHHHHHhCCCCccEEEECCC-
Confidence 899999994 443 6777777766 87 9999998765221 11 11111 1 012346999886321
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEE
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....++.+.+.|+++|+++.+
T Consensus 227 ----~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 227 ----TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp ----HHHHHHHHHHHEEEEEEEEES
T ss_pred ----chHHHHHHHHHhccCCEEEEE
Confidence 245677888999999998754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.20 E-value=0.64 Score=38.91 Aligned_cols=91 Identities=10% Similarity=0.005 Sum_probs=57.1
Q ss_pred HhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC------CCCCceeE
Q 027039 89 QGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAFDV 151 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~fD~ 151 (229)
......+++.+||-.|+|. |..+..++.. |...++++|.+++..+ ++..+-.+.+ -....+|+
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~ 232 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQL 232 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEE
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccc
Confidence 3345668999999999876 5666666665 8878899998876322 2221111110 01235677
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
|+...- -...++...+.+++||++++.-
T Consensus 233 v~d~~G-----~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 233 ILETAG-----VPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp EEECSC-----SHHHHHHHHHHCCTTCEEEECC
T ss_pred cccccc-----ccchhhhhhheecCCeEEEEEe
Confidence 764211 2346777889999999988543
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=87.88 E-value=0.77 Score=37.65 Aligned_cols=65 Identities=17% Similarity=0.074 Sum_probs=38.5
Q ss_pred CCceeEEEcc----cchh-------hh-CHHHHHHHHHhccccCcEEEEEeecC-CcccHHHHHHHHhcCceeEeeee
Q 027039 146 DEAFDVAFTA----HLAE-------AL-FPSRFVGEMERTVKIGGVCMVLMEEC-AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 146 ~~~fD~V~~~----~~~~-------~~-~~~~~l~~~~~~LkpgG~lil~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
-+.||+|+.| +-.| |. ...-+-....+.|||||.+++..... |-.+..-+..+-++.++.++..-
T Consensus 209 ~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv~~P 286 (324)
T 3trk_A 209 LGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALKP 286 (324)
T ss_dssp GCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECC
T ss_pred CCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeeeecC
Confidence 3799999998 1111 11 22334467778999999988554432 22233345556666666555543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.80 E-value=1.3 Score=37.18 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=55.5
Q ss_pred ccCCCCCeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC--------CCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~fD~V~ 153 (229)
..++++.+||-+|+ |.|..+..++.. |. +|+++|.+++..+. ...|..+.. .....+|+|+
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi 240 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVV 240 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEE
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEE
Confidence 46789999999998 456777777665 87 99999987652210 111222211 1124799998
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.+.-. +.++.+.+.|+++|+++++
T Consensus 241 ~~~g~------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 241 DHTGA------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp ESSCS------SSHHHHHHHEEEEEEEEES
T ss_pred ECCCH------HHHHHHHHhhccCCEEEEE
Confidence 75321 2467788899999998754
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.52 E-value=0.2 Score=42.27 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=55.6
Q ss_pred cCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCC-CC-------CCCCceeEEEc
Q 027039 93 LLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHN-LP-------FFDEAFDVAFT 154 (229)
Q Consensus 93 ~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~-~~-------~~~~~fD~V~~ 154 (229)
.++++.+||-+|++ .|..+..++.. |. +|+++|.+++..+. ...|..+ -. ..++.+|+|+.
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~ 244 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVIN 244 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEE
Confidence 56889999999983 46666666654 87 99999988762210 1123321 11 01126899987
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+.- ....++.+.+.|++||+++++-
T Consensus 245 ~~g-----~~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 245 VSV-----SEAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp CSS-----CHHHHHHHTTSEEEEEEEEECC
T ss_pred CCC-----cHHHHHHHHHHHhcCCEEEEEe
Confidence 532 1346788899999999987543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=87.47 E-value=0.17 Score=41.79 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=56.3
Q ss_pred HHHHhcccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCCCeEEE-------cCCCC-CCCCC--CceeEE
Q 027039 86 KHLQGKSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSLPLVSR-------ADPHN-LPFFD--EAFDVA 152 (229)
Q Consensus 86 ~~l~~~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~~~~~~-------~d~~~-~~~~~--~~fD~V 152 (229)
..+.... ++++.+||-+|+ | .|..+..++.. |. +|+++|.+++..+... .|..+ ..+.+ +.+|+|
T Consensus 116 ~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~v 193 (302)
T 1iz0_A 116 LALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLV 193 (302)
T ss_dssp HHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEE
T ss_pred HHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEE
Confidence 3333344 789999999998 3 36777777665 87 9999998776433110 11111 00000 468988
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+. . .. ..++...+.++++|+++.+
T Consensus 194 id-~-g~-----~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 194 LE-V-RG-----KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EE-C-SC-----TTHHHHHTTEEEEEEEEEC
T ss_pred EE-C-CH-----HHHHHHHHhhccCCEEEEE
Confidence 86 3 21 3567888999999998754
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=87.47 E-value=0.29 Score=40.69 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=53.5
Q ss_pred CCCCC-eEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEc-CCCC-CCCCCCceeEEEcccch
Q 027039 94 LFNHS-KVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRA-DPHN-LPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 94 ~~~~~-~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~-d~~~-~~~~~~~fD~V~~~~~~ 158 (229)
++++. +||-.|+ | .|..+..+++. |. +|+++|.+++..+ ++.. +... .....+.+|+|+-.. .
T Consensus 143 ~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~-g 220 (324)
T 3nx4_A 143 IRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTV-G 220 (324)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESS-C
T ss_pred cCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECC-C
Confidence 44432 4999997 3 37788888876 87 9999998876322 2211 1111 112345799988532 1
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEE
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...+++..+.|+|+|+++++
T Consensus 221 -----~~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 221 -----DKVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp -----HHHHHHHHHTEEEEEEEEEC
T ss_pred -----cHHHHHHHHHHhcCCEEEEE
Confidence 12788899999999998854
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=87.34 E-value=0.78 Score=38.42 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=58.8
Q ss_pred HHHHHHHhcccCCCCCeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCCCeE--------EEcCCCCC-CC------
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSLPLV--------SRADPHNL-PF------ 144 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~~~~--------~~~d~~~~-~~------ 144 (229)
..+..+.....++++.+||-.|+ |.|..+..++.. |. +|+++|.+++..+. ...|..+. .+
T Consensus 142 ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 142 TAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKR 220 (345)
T ss_dssp HHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHH
Confidence 33333434456789999999997 346666666665 87 89999987542111 11122211 11
Q ss_pred -CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 145 -FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 145 -~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..+.+|+|+.+.- ...++...+.|++||+++++
T Consensus 221 ~~~~~~d~vi~~~g------~~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 221 CFPNGIDIYFENVG------GKMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HCTTCEEEEEESSC------HHHHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCcEEEECCC------HHHHHHHHHHHhcCCEEEEE
Confidence 1246999987532 13678888999999998754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.32 E-value=0.75 Score=38.25 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=56.6
Q ss_pred HHhcccCCCCCeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC--------CCCCce
Q 027039 88 LQGKSLLFNHSKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP--------FFDEAF 149 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~~f 149 (229)
+.....++++.+||-.|+ |.|.....++.. |. +|+++|.+++..+. ...|..+.. .....+
T Consensus 132 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 132 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred HHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCc
Confidence 333456789999999994 335666666655 87 99999987652110 111222211 112469
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
|+++.+.- ...++.+.+.|++||+++++-
T Consensus 211 D~vi~~~g------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 211 RVVYDSVG------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEEECSC------GGGHHHHHHTEEEEEEEEECC
T ss_pred eEEEECCc------hHHHHHHHHHhcCCCEEEEEe
Confidence 99987532 235677889999999987543
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=87.01 E-value=1.4 Score=37.33 Aligned_cols=77 Identities=22% Similarity=0.206 Sum_probs=51.3
Q ss_pred CCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCC---CC--------CeEEEcCCCCCCCCC------CceeEEEcccc
Q 027039 97 HSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMD---SL--------PLVSRADPHNLPFFD------EAFDVAFTAHL 157 (229)
Q Consensus 97 ~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~---~~--------~~~~~~d~~~~~~~~------~~fD~V~~~~~ 157 (229)
+.+||-+|+|. |..+..++.. |. +|+++|.++ +. .+.+ | .+ .+.+ +.+|+|+.+.-
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v--~-~~-~~~~~~~~~~~~~d~vid~~g 255 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY--N-SS-NGYDKLKDSVGKFDVIIDATG 255 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE--E-CT-TCSHHHHHHHCCEEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee--c-hH-HHHHHHHHhCCCCCEEEECCC
Confidence 99999999843 5555666655 87 999999987 42 2222 3 33 2211 46999987532
Q ss_pred hhhhCHHHHH-HHHHhccccCcEEEEE
Q 027039 158 AEALFPSRFV-GEMERTVKIGGVCMVL 183 (229)
Q Consensus 158 ~~~~~~~~~l-~~~~~~LkpgG~lil~ 183 (229)
. ...+ +...+.|+++|+++++
T Consensus 256 ~-----~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 256 A-----DVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp C-----CTHHHHHHGGGEEEEEEEEEC
T ss_pred C-----hHHHHHHHHHHHhcCCEEEEE
Confidence 1 1245 7888999999998754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=86.90 E-value=1.1 Score=37.34 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=57.5
Q ss_pred HHHHhcccCCCCCeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC--------CCCC
Q 027039 86 KHLQGKSLLFNHSKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP--------FFDE 147 (229)
Q Consensus 86 ~~l~~~~~~~~~~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~~ 147 (229)
..+.....++++.+||-.|+ |.|.....++.. |. +|+++|.+++..+. ...|..+.. ....
T Consensus 135 ~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~ 213 (333)
T 1wly_A 135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGK 213 (333)
T ss_dssp HHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTC
T ss_pred HHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCC
Confidence 33333456789999999995 446666666654 87 99999988642110 111222211 1124
Q ss_pred ceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 148 ~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
.+|+++.+.-. ..++...+.|++||+++++-
T Consensus 214 ~~d~vi~~~g~------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 214 GVDVVYDSIGK------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp CEEEEEECSCT------TTHHHHHHTEEEEEEEEECC
T ss_pred CCeEEEECCcH------HHHHHHHHhhccCCEEEEEe
Confidence 69999875321 35678889999999987543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=86.81 E-value=1.1 Score=39.27 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=54.9
Q ss_pred ccCCCCCeEEEEcC-CC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC----------------
Q 027039 92 SLLFNHSKVLCVSA-GA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP---------------- 143 (229)
Q Consensus 92 ~~~~~~~~vLDiG~-G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~---------------- 143 (229)
..++++.+||-+|+ |. |..+..++.. |. ++++++.+++..+ ++...-.+..
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~ 302 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRF 302 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHH
Confidence 46789999999997 43 7777777776 77 8888886655221 2221111110
Q ss_pred -------CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 144 -------FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 144 -------~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.....+|+|+-..- .+.+....+.|++||+++++
T Consensus 303 ~~~i~~~t~g~g~Dvvid~~G------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 303 GKRIRELTGGEDIDIVFEHPG------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHTSCCEEEEEECSC------HHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHhCCCCCcEEEEcCC------chhHHHHHHHhhCCcEEEEE
Confidence 01247999886321 14677888999999998854
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.66 E-value=0.74 Score=38.26 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=53.7
Q ss_pred hcccCCCCCeEEEEc-CCC-ChhhHHHHhC-CCCeEEEecCCCC--------CCeEEEcCCCC-CCCCCCceeEEEcccc
Q 027039 90 GKSLLFNHSKVLCVS-AGA-GHEVMAFNSI-GVADVTGVELMDS--------LPLVSRADPHN-LPFFDEAFDVAFTAHL 157 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG-~G~-G~~~~~l~~~-g~~~v~~vD~s~~--------~~~~~~~d~~~-~~~~~~~fD~V~~~~~ 157 (229)
....++++.+||-+| +|. |..+..+++. |. +|++++.++. ...++..+-.+ +.-.-..+|+|+-..-
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVG 224 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSC
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCC
Confidence 445678999999997 554 7888888776 87 8888864322 11122211111 1101146899886321
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.. .+....+.|++||+++.+
T Consensus 225 -----~~-~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 225 -----GD-VGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp -----HH-HHHHHGGGEEEEEEEEEC
T ss_pred -----cH-HHHHHHHhccCCCEEEEe
Confidence 12 237788999999998854
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=86.14 E-value=1.5 Score=36.71 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=36.1
Q ss_pred EE-EcCCCC-C-CCCCCceeEEEcc--c-ch--------hhh-CHHHHHHHHHhccccCcEEEEEeecC
Q 027039 134 VS-RADPHN-L-PFFDEAFDVAFTA--H-LA--------EAL-FPSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 134 ~~-~~d~~~-~-~~~~~~fD~V~~~--~-~~--------~~~-~~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
++ ++|..+ + .+++++||+|++. + .. ... .....+.++.++|||||.+++..+..
T Consensus 41 l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 41 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred EEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 44 677644 1 2346788888886 1 11 111 34677888999999999999887653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.96 E-value=1.1 Score=36.17 Aligned_cols=69 Identities=13% Similarity=0.241 Sum_probs=39.9
Q ss_pred EEEcCCCC-C-CCCCCceeEEEcc--c-ch-----------hhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHH
Q 027039 134 VSRADPHN-L-PFFDEAFDVAFTA--H-LA-----------EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIV 196 (229)
Q Consensus 134 ~~~~d~~~-~-~~~~~~fD~V~~~--~-~~-----------~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~ 196 (229)
++++|..+ + .+++++||+|++. + .. ... .....+.++.++|||||.+++.... +....+.
T Consensus 7 l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d---~~~~~~~ 83 (260)
T 1g60_A 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---FNCAFIC 83 (260)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---HHHHHHH
T ss_pred EEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc---HHHHHHH
Confidence 45566533 1 1345688888876 1 11 001 2466788899999999998876532 2333444
Q ss_pred HHHhcCcee
Q 027039 197 ELFRTSRFV 205 (229)
Q Consensus 197 ~l~~~~~~~ 205 (229)
..+...+|.
T Consensus 84 ~~~~~~gf~ 92 (260)
T 1g60_A 84 QYLVSKGMI 92 (260)
T ss_dssp HHHHHTTCE
T ss_pred HHHHhhccc
Confidence 455544443
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=85.71 E-value=1.2 Score=37.57 Aligned_cols=93 Identities=8% Similarity=-0.007 Sum_probs=56.8
Q ss_pred HHHHHhcccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCC--------CCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLP--------FFD 146 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~--------~~~ 146 (229)
+..+.....++++.+||-.|++ .|..+..++.. |. +|+++|.+++..+. ...|..+.. ...
T Consensus 151 ~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 229 (354)
T 2j8z_A 151 FQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKG 229 (354)
T ss_dssp HHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred HHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcC
Confidence 3333344567899999999853 35666665554 77 89999987652210 111222211 112
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
..+|+++.+.-. ..+....+.|++||+++++-
T Consensus 230 ~~~d~vi~~~G~------~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 230 AGVNLILDCIGG------SYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp SCEEEEEESSCG------GGHHHHHHHEEEEEEEEECC
T ss_pred CCceEEEECCCc------hHHHHHHHhccCCCEEEEEe
Confidence 469999875322 13567788999999987543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=85.35 E-value=1.4 Score=36.59 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=54.2
Q ss_pred cCCCCC-eEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEc-C--CCCC-CCCCCceeEEEcc
Q 027039 93 LLFNHS-KVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRA-D--PHNL-PFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~-~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~-d--~~~~-~~~~~~fD~V~~~ 155 (229)
.++++. +||-+|+ | -|..+..++.. |. +|++++.+++..+ ++.. + .... ....+.+|+|+-.
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~ 224 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDP 224 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEEC
Confidence 457775 8999997 3 36777777776 87 7999998866322 2211 1 1111 1223579998864
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.-. ..+.+..+.+++||+++++
T Consensus 225 ~g~------~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 225 VGG------KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp CCT------HHHHHHHTTEEEEEEEEEC
T ss_pred CcH------HHHHHHHHhhcCCCEEEEE
Confidence 211 2577888999999998754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=84.70 E-value=1.4 Score=36.93 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=56.1
Q ss_pred HHhcccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCC--------CeEEEcCCCCCC------CCCCcee
Q 027039 88 LQGKSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSL--------PLVSRADPHNLP------FFDEAFD 150 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~--------~~~~~~d~~~~~------~~~~~fD 150 (229)
+.....++++.+||-+|+ | .|..+..++.. |. +|+++ .+++. .+.+. +..++. .....+|
T Consensus 142 l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 142 LVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp HTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred HHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCce
Confidence 335567789999999994 3 37777777766 77 89988 55442 22222 211111 1224799
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+|+-+.- ...+....+.|+++|+++++
T Consensus 219 ~vid~~g------~~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 219 LVYDTLG------GPVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp EEEESSC------THHHHHHHHHEEEEEEEEES
T ss_pred EEEECCC------cHHHHHHHHHHhcCCeEEEE
Confidence 9986422 13677888899999998854
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.96 E-value=1.6 Score=36.66 Aligned_cols=90 Identities=19% Similarity=0.121 Sum_probs=52.2
Q ss_pred HHHhcccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCC-------CCeEEEcCCCCCC-----CCCCceeE
Q 027039 87 HLQGKSLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDS-------LPLVSRADPHNLP-----FFDEAFDV 151 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~-------~~~~~~~d~~~~~-----~~~~~fD~ 151 (229)
.+.....++++.+||=.|++ .|..+..+++. |...|++++.+.. .-.++. +-.++. ...+.+|+
T Consensus 133 ~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~~~~~~~~~~ga~~~~~-~~~~~~~~~~~~~~~g~Dv 211 (349)
T 4a27_A 133 MLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFD-RNADYVQEVKRISAEGVDI 211 (349)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEECGGGHHHHGGGSSEEEE-TTSCHHHHHHHHCTTCEEE
T ss_pred HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHcCCcEEEc-CCccHHHHHHHhcCCCceE
Confidence 33445677899999999983 36777777776 5558998873322 111222 111110 12357999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+-..-. ..+....+.|++||+++++
T Consensus 212 v~d~~g~------~~~~~~~~~l~~~G~~v~~ 237 (349)
T 4a27_A 212 VLDCLCG------DNTGKGLSLLKPLGTYILY 237 (349)
T ss_dssp EEEECC-------------CTTEEEEEEEEEE
T ss_pred EEECCCc------hhHHHHHHHhhcCCEEEEE
Confidence 9863211 1236778999999998855
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=83.78 E-value=0.53 Score=39.84 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=52.6
Q ss_pred cCC-CCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCeEEE--------cCCCC---CCCCCCceeEEEcccch
Q 027039 93 LLF-NHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPLVSR--------ADPHN---LPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 93 ~~~-~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~~--------~d~~~---~~~~~~~fD~V~~~~~~ 158 (229)
.++ ++.+||-+|+|. |..+..+++. |. +|+++|.+++..+... .|..+ +.-..+.+|+|+-..-.
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~ 254 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPV 254 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCC
Confidence 456 899999999864 6666677766 87 8999998876322110 01111 00001368998864211
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEE
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...++...+.|++||+++.+
T Consensus 255 -----~~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 255 -----HHALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp -----CCCSHHHHTTEEEEEEEEEC
T ss_pred -----hHHHHHHHHHhccCCEEEEe
Confidence 11245677899999998754
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=83.51 E-value=4.5 Score=33.95 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=52.3
Q ss_pred HHhcccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCC------------CCeEEEcC---CCCCC-CCC--
Q 027039 88 LQGKSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDS------------LPLVSRAD---PHNLP-FFD-- 146 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~------------~~~~~~~d---~~~~~-~~~-- 146 (229)
+.....++++.+||-+|+ | .|..+..+++. |...+..++.++. .-.++..+ ..++. ...
T Consensus 159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~ 238 (357)
T 1zsy_A 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDM 238 (357)
T ss_dssp HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSS
T ss_pred HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCC
Confidence 333456789999999997 3 37888888876 8745555555442 11122210 11111 111
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+.+|+|+-..-. .. ..+..+.|++||+++++
T Consensus 239 ~~~Dvvid~~g~-----~~-~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 239 PQPRLALNCVGG-----KS-STELLRQLARGGTMVTY 269 (357)
T ss_dssp CCCSEEEESSCH-----HH-HHHHHTTSCTTCEEEEC
T ss_pred CCceEEEECCCc-----HH-HHHHHHhhCCCCEEEEE
Confidence 148998853211 11 24577899999998855
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=83.24 E-value=1.8 Score=36.34 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=55.6
Q ss_pred hcccCCCC--CeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCCeE--------EEcCCCCCC-------CCCCce
Q 027039 90 GKSLLFNH--SKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLPLV--------SRADPHNLP-------FFDEAF 149 (229)
Q Consensus 90 ~~~~~~~~--~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~~~--------~~~d~~~~~-------~~~~~f 149 (229)
....++++ .+||-.|++ .|..+..++.. |..+|+++|.+++..+. ...|..+.. ...+.+
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~ 231 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGV 231 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCC
Confidence 44567888 999999983 35555555554 76689999987542110 112222211 111268
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+++.+.- ...++...+.|++||+++++
T Consensus 232 d~vi~~~G------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 232 DVYFDNVG------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp EEEEESCC------HHHHHHHHHTEEEEEEEEEC
T ss_pred CEEEECCC------HHHHHHHHHHhccCcEEEEE
Confidence 99987532 25678888999999998754
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=83.18 E-value=0.84 Score=38.29 Aligned_cols=39 Identities=8% Similarity=-0.030 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL 133 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~ 133 (229)
..++..|||.-||+|..+.+....|. +.+|+|+++...+
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~ 288 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVA 288 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHH
Confidence 37899999999999999999888876 9999999987444
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=83.00 E-value=3.7 Score=29.42 Aligned_cols=86 Identities=9% Similarity=-0.085 Sum_probs=51.1
Q ss_pred CCeEEEEcCCC-Ch-hhHHHHhCCCCeEEEecCCCC--------CCeEEEcCCCCCC----CCCCceeEEEcccchhhhC
Q 027039 97 HSKVLCVSAGA-GH-EVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLP----FFDEAFDVAFTAHLAEALF 162 (229)
Q Consensus 97 ~~~vLDiG~G~-G~-~~~~l~~~g~~~v~~vD~s~~--------~~~~~~~d~~~~~----~~~~~fD~V~~~~~~~~~~ 162 (229)
..+|+=+|+|. |. .+..|.+.|. +|+++|.+++ ...++.+|..+.. ..-..+|+|++..-...
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~-- 83 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY-- 83 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHH--
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChH--
Confidence 46788899864 32 2333444477 9999999876 3457788877632 11247888886321111
Q ss_pred HHHHHHHHHhccccCcEEEEEee
Q 027039 163 PSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
-...+....+.+.|+..++..+.
T Consensus 84 ~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 84 EAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp HHHHHHHHHHHHCSSSEEEEEES
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC
Confidence 11223345666788888664443
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=82.84 E-value=0.79 Score=38.66 Aligned_cols=110 Identities=10% Similarity=0.112 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCC--CeE-EEecCCCCC---------CeEEEcCCCCCCC---CCCceeEEEcc----
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGV--ADV-TGVELMDSL---------PLVSRADPHNLPF---FDEAFDVAFTA---- 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~--~~v-~~vD~s~~~---------~~~~~~d~~~~~~---~~~~fD~V~~~---- 155 (229)
+...+++|+-||.|.....+...|. ..+ .++|+++.. -.++.+|+.++.. +...+|+++..
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 4456899999999999999998874 456 799999762 2256788887642 22368999965
Q ss_pred cc--hh-----hh-CHH-HHHHHHHh-c---c--ccCcEEEEEeecC-CcccHHHHHHHHhcCce
Q 027039 156 HL--AE-----AL-FPS-RFVGEMER-T---V--KIGGVCMVLMEEC-AGREIKQIVELFRTSRF 204 (229)
Q Consensus 156 ~~--~~-----~~-~~~-~~l~~~~~-~---L--kpgG~lil~~~~~-~~~~~~~l~~l~~~~~~ 204 (229)
.+ .. .. ++. .++.++.+ . + +|.-.++=.|..- .....+.+.+.+...+.
T Consensus 88 ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY 152 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQY 152 (327)
T ss_dssp TCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTTC
T ss_pred CcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCCC
Confidence 22 11 11 332 45556555 4 4 4654433223221 12345666776765544
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=82.77 E-value=1.1 Score=37.79 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------EEEcCCCCCCCC-CCceeEEEcc------cch--
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------VSRADPHNLPFF-DEAFDVAFTA------HLA-- 158 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------~~~~d~~~~~~~-~~~fD~V~~~------~~~-- 158 (229)
.+.+++|+.||.|.++..+...|+..+.++|+++...+ ...+|+.++... -..+|+|+.. ...
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~ 89 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEECCCCCCcchhcc
Confidence 35789999999999999999999878999999876221 226777665311 1358999986 111
Q ss_pred -hhh-CH----HHHHHHHHhccccCcEEEEEeecC----CcccHHHHHHHHhcCc
Q 027039 159 -EAL-FP----SRFVGEMERTVKIGGVCMVLMEEC----AGREIKQIVELFRTSR 203 (229)
Q Consensus 159 -~~~-~~----~~~l~~~~~~LkpgG~lil~~~~~----~~~~~~~l~~l~~~~~ 203 (229)
... ++ ..-+.++.+.++|.-.++=-|..- ....+..+.+.+...+
T Consensus 90 ~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~G 144 (327)
T 2c7p_A 90 QKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELD 144 (327)
T ss_dssp CCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTT
T ss_pred cCCCcchhhHHHHHHHHHHHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCC
Confidence 011 22 122334445578875544334432 1234566666666544
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.34 E-value=0.93 Score=37.66 Aligned_cols=85 Identities=19% Similarity=0.161 Sum_probs=53.1
Q ss_pred ccCCCCC-eEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEc-CC-CC--CCCCCCceeEEEc
Q 027039 92 SLLFNHS-KVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSLPL---------VSRA-DP-HN--LPFFDEAFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~-~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~-d~-~~--~~~~~~~fD~V~~ 154 (229)
..++++. +||-+|+ | .|..+..++.. |. +|++++.+++..+ ++.. +. .+ .....+.+|+|+-
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid 222 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVD 222 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEE
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEE
Confidence 3457775 8999997 3 37777777766 87 8999998866321 2211 11 01 0122347999886
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..-. ..+....+.+++||+++++
T Consensus 223 ~~g~------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 223 PVGG------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp CSTT------TTHHHHHHTEEEEEEEEEC
T ss_pred CCcH------HHHHHHHHhhccCCEEEEE
Confidence 4211 2467788899999998754
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.21 E-value=0.54 Score=34.48 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=30.1
Q ss_pred CCCCceeEEEccc-ch-h-hhCHHHHHHHHHhccccCcEEEE
Q 027039 144 FFDEAFDVAFTAH-LA-E-ALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 144 ~~~~~fD~V~~~~-~~-~-~~~~~~~l~~~~~~LkpgG~lil 182 (229)
+++++||.|+.-. -. . ...|.+++..+.+.|||||++.-
T Consensus 55 Lp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 55 LENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred CCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 4679999998642 11 2 22679999999999999999774
|
| >4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} | Back alignment and structure |
|---|
Probab=82.02 E-value=2.6 Score=38.19 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=38.6
Q ss_pred CCceeEEEcc----cchhh-------h-CHHHHHHHHHhccccCcEEEEEeec-CCcccHHHHHHHHhcCceeEeee
Q 027039 146 DEAFDVAFTA----HLAEA-------L-FPSRFVGEMERTVKIGGVCMVLMEE-CAGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 146 ~~~fD~V~~~----~~~~~-------~-~~~~~l~~~~~~LkpgG~lil~~~~-~~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
++.||+|+.| +-.|| . ...-+-....+.|||||.+++.... .|-.+..-+..+-++.++.++..
T Consensus 219 ~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF~~~rv~~ 295 (670)
T 4gua_A 219 QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAAR 295 (670)
T ss_dssp CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTEEEEEEEC
T ss_pred CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhheeeeeeeC
Confidence 5799999998 11111 1 2233446788999999998755433 23223334555666666666554
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.89 E-value=1 Score=38.34 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcC-CC-ChhhHHHHhC-CCCeEEEecCCCCCCeE-------EEcCCCCCCC-----CCCceeEEEcccch
Q 027039 94 LFNHSKVLCVSA-GA-GHEVMAFNSI-GVADVTGVELMDSLPLV-------SRADPHNLPF-----FDEAFDVAFTAHLA 158 (229)
Q Consensus 94 ~~~~~~vLDiG~-G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~-------~~~d~~~~~~-----~~~~fD~V~~~~~~ 158 (229)
++++.+||-.|+ |. |..+..++.. |. +|++++ ++...+. ...|..+..+ ..+.+|+|+-..-.
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~ 258 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGG 258 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCC
Confidence 688999999993 43 7777777766 86 898888 4442110 0111111110 11468998864211
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEE
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+...+....+.+++||+++.+
T Consensus 259 ----~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 259 ----STETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp ----THHHHGGGGBCSSSCCEEEES
T ss_pred ----hhhhhHHHHHhhcCCcEEEEe
Confidence 223456677889999998744
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=80.01 E-value=6.7 Score=30.29 Aligned_cols=92 Identities=12% Similarity=0.093 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCCCCCCCCceeEEEcccchhhhCHHHHHHHHHhc
Q 027039 96 NHSKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFPSRFVGEMERT 173 (229)
Q Consensus 96 ~~~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~ 173 (229)
..++|.=||+|. +.++..+++.|. +|+.+|.+++ .-...|+|+..--. ....++++++...
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~~~--------------~~~~aD~vi~av~~--~~~~~v~~~l~~~ 80 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSKDQ--------------ATTLGEIVIMAVPY--PALAALAKQYATQ 80 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTCC--------------CSSCCSEEEECSCH--HHHHHHHHHTHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHH--------------HhccCCEEEEcCCc--HHHHHHHHHHHHh
Confidence 467899999875 234445556676 8999998766 12357888874211 1234566677667
Q ss_pred cccCcEEEEEeecCCc-----------c-c-HHHHHHHHhcCceeE
Q 027039 174 VKIGGVCMVLMEECAG-----------R-E-IKQIVELFRTSRFVD 206 (229)
Q Consensus 174 LkpgG~lil~~~~~~~-----------~-~-~~~l~~l~~~~~~~~ 206 (229)
++ +.. ++.+...-. . . .+.+.+.+...++++
T Consensus 81 ~~-~~~-vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~~~vv~ 124 (209)
T 2raf_A 81 LK-GKI-VVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLK 124 (209)
T ss_dssp HT-TSE-EEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTTSEEEE
T ss_pred cC-CCE-EEEECCCCCccccccccCCCCCcHHHHHHHHCCCCcEEE
Confidence 77 444 434433111 1 1 455666666555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.8 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.8 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.78 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.77 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.74 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.73 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.72 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.71 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.66 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.65 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.64 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.63 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.63 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.62 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.62 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.62 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.61 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.59 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.59 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.58 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.57 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.56 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.55 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.55 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.55 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.53 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.52 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.52 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.51 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.5 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.48 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.47 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.45 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.44 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.44 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.44 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.43 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.42 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.4 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.4 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.4 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.39 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.39 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.39 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.38 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.38 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.31 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.28 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.22 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.22 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.19 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.13 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.11 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.1 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.08 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 99.01 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.0 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.99 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.97 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.93 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.9 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.9 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.87 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.87 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.82 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.81 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.81 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.77 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.76 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.75 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.7 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.68 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.67 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.59 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.56 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.56 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.52 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.49 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.46 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.44 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.39 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.36 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.34 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.33 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.33 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.29 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.24 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.22 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.07 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.05 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.0 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.96 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.86 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.7 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.63 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.63 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.49 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.98 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.95 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.87 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.68 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.65 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.62 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.6 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.56 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.54 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.37 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.13 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.08 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.07 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.88 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.43 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.08 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.0 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.96 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.83 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.27 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.24 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.21 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.09 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.89 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.76 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.36 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.07 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 91.99 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.84 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.46 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.22 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.96 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 89.71 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 89.7 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.57 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 89.1 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 88.11 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 84.88 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.76 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 82.08 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 80.78 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 80.56 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.24 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=5.2e-20 Score=148.82 Aligned_cols=97 Identities=24% Similarity=0.358 Sum_probs=86.3
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVA 152 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V 152 (229)
+.+...++++.+|||||||+|.++..+++.+. +|+|+|+|+.+ +.++++|++++|+++++||+|
T Consensus 8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred HHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccccccccccccccccccccccee
Confidence 34445779999999999999999999999864 99999999763 558999999999999999999
Q ss_pred Ecccchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+|..+.+|. ++.++++++.++|||||++++...
T Consensus 87 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 87 TCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeeceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 999888888 899999999999999999887543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.80 E-value=1.2e-19 Score=145.86 Aligned_cols=96 Identities=28% Similarity=0.404 Sum_probs=85.2
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVA 152 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V 152 (229)
+++...++++.+|||||||+|.++..+++.+. +|+|+|+|+. .++++++|.+++|+++++||+|
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v 85 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIV 85 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEE
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccc
Confidence 34445779999999999999999999999975 9999999975 3459999999999999999999
Q ss_pred Ecccchhhh-CHHHHHHHHHhccccCcEEEEEe
Q 027039 153 FTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 153 ~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+|..+.+|+ ++.++++++.++|||||++++..
T Consensus 86 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 86 TCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 999999888 99999999999999999988764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=3.8e-19 Score=143.63 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=82.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------eEEEcCCCCCCCCCCceeEEEcc-cchhhh-C
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------LVSRADPHNLPFFDEAFDVAFTA-HLAEAL-F 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------~~~~~d~~~~~~~~~~fD~V~~~-~~~~~~-~ 162 (229)
+.++.+|||+|||+|..+..+++.|. +|+|+|+|+.++ .++.+|++++|+++++||+|++. .+.+|. +
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred cCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 36788999999999999999999986 999999998844 38899999999999999999975 677888 9
Q ss_pred HHHHHHHHHhccccCcEEEEEeec
Q 027039 163 PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.++++++.++|||||.+++.+..
T Consensus 119 ~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 119 KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHhhcCcCcEEEEEECC
Confidence 999999999999999999887754
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.77 E-value=2.2e-18 Score=142.92 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=89.0
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCC
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~ 145 (229)
.+...+.....++++++|||||||+|..+..+++. |. +|+|+|+++. .+.++.+|+.++|++
T Consensus 54 ~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~ 132 (282)
T d2o57a1 54 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE 132 (282)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccccccccc
Confidence 34445555667899999999999999999999987 65 9999999976 356999999999999
Q ss_pred CCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 146 DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+++||+|++..+.+|. ++.++++++.++|||||++++...
T Consensus 133 ~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 133 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999888888 899999999999999999887643
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=1.1e-18 Score=139.04 Aligned_cols=93 Identities=20% Similarity=0.338 Sum_probs=81.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
.++++.+|||||||+|..+..+++.+. +|+|+|+|+.+ +.++.+|+.++++++++||+|++..+.
T Consensus 34 ~l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 34 YMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred hcCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence 347889999999999999999999876 99999999773 348889999999999999999999888
Q ss_pred hhh---CHHHHHHHHHhccccCcEEEEEeec
Q 027039 159 EAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 159 ~~~---~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+|+ ++.++++++.++|||||++++....
T Consensus 113 ~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 876 4577999999999999998876653
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=2.7e-17 Score=130.00 Aligned_cols=109 Identities=23% Similarity=0.317 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-CHHH
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-FPSR 165 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~~~~ 165 (229)
.++.+|||||||+|.++..++ +++|+|+|+. .+.++++|++++|+++++||+|++.++.+|+ ++.+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~ 109 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 109 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 577899999999999988774 4689999987 4569999999999999999999999999998 8999
Q ss_pred HHHHHHhccccCcEEEEEeecCC---------------------cccHHHHHHHHhcCceeEee
Q 027039 166 FVGEMERTVKIGGVCMVLMEECA---------------------GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 166 ~l~~~~~~LkpgG~lil~~~~~~---------------------~~~~~~l~~l~~~~~~~~~~ 208 (229)
+++++.++|||||.+++.+.... ..+..++.++++..+|..+.
T Consensus 110 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 110 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred chhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999998875432 12567888999998886554
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.5e-17 Score=135.10 Aligned_cols=119 Identities=14% Similarity=0.117 Sum_probs=95.4
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCcee
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD 150 (229)
+.....++++.+|||||||+|..+..+++. |. +|+|+|+|+. .++++++|+.++ +++++||
T Consensus 25 l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD 102 (245)
T d1nkva_ 25 LGRVLRMKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCD 102 (245)
T ss_dssp HHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEE
T ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCcee
Confidence 334446799999999999999999999887 65 9999999976 256999999997 4689999
Q ss_pred EEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeecCC-------------------cccHHHHHHHHhcCceeEee
Q 027039 151 VAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECA-------------------GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 151 ~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~-------------------~~~~~~l~~l~~~~~~~~~~ 208 (229)
+|++....+|. ++.++++++.++|||||++++...... ..+...+.+.+.+.++..+.
T Consensus 103 ~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~ 180 (245)
T d1nkva_ 103 VAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 180 (245)
T ss_dssp EEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred EEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEE
Confidence 99999888888 899999999999999999987654311 12445566777777775444
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.3e-17 Score=132.15 Aligned_cols=118 Identities=12% Similarity=0.126 Sum_probs=96.8
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------------eEEEcCCCCCCCCCCceeEEEcccch
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------LVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------------~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
..++.+|||||||+|..+..++..+..+|+|+|+|+.++ .++++|++++++++++||+|++..+.
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 467789999999999999998777555999999998743 48999999999989999999999998
Q ss_pred hhh-CH--HHHHHHHHhccccCcEEEEEeecCCc------------ccHHHHHHHHhcCceeEeeeee
Q 027039 159 EAL-FP--SRFVGEMERTVKIGGVCMVLMEECAG------------REIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 159 ~~~-~~--~~~l~~~~~~LkpgG~lil~~~~~~~------------~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
+|+ ++ .+++++++++|||||.+++....... .+...+.++|+.++|.-++.-.
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred ccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 888 44 47999999999999999876443221 2578899999988886655443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.69 E-value=5.9e-17 Score=129.99 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh-C
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL-F 162 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~-~ 162 (229)
..+.+|||||||+|.++..+++.|. +|+|+|+|+. .+.++++|+++.++ +++||+|++.++.+|+ +
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSS
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecCC
Confidence 4577899999999999999999886 8999999976 35588899988876 6899999999999999 9
Q ss_pred HHHHHHHHH-hccccCcEEEEEeecCC------------------------------cccHHHHHHHHhcCceeE
Q 027039 163 PSRFVGEME-RTVKIGGVCMVLMEECA------------------------------GREIKQIVELFRTSRFVD 206 (229)
Q Consensus 163 ~~~~l~~~~-~~LkpgG~lil~~~~~~------------------------------~~~~~~l~~l~~~~~~~~ 206 (229)
|..++.++. ++|||||.+++.++... .++..++..++.+.+|.-
T Consensus 97 ~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i 171 (225)
T d2p7ia1 97 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 171 (225)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEE
Confidence 999999998 78999999998875311 235667888888888753
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=1.5e-16 Score=125.04 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCCCCCCCCceeEEEcccchhh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHNLPFFDEAFDVAFTAHLAEA 160 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~ 160 (229)
++.+|||||||+|..+..++++|. +|+|+|+|+.+ +.+...|+.++++ +++||+|+++.+.+|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence 445999999999999999999987 99999999862 4578889888876 689999999988888
Q ss_pred hC---HHHHHHHHHhccccCcEEEEEeecCC-----------cccHHHHHHHHhcCceeEee
Q 027039 161 LF---PSRFVGEMERTVKIGGVCMVLMEECA-----------GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 161 ~~---~~~~l~~~~~~LkpgG~lil~~~~~~-----------~~~~~~l~~l~~~~~~~~~~ 208 (229)
+. ..++++++.+.|||||.+++...... .....++.+.|...+++...
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~i~~~~ 169 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYYEGWDMLKYN 169 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCTTHHHHHTTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCHHHHHHHhCCCeEEEee
Confidence 73 25799999999999999887654311 12334677778766655433
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.65 E-value=1.6e-16 Score=129.96 Aligned_cols=120 Identities=14% Similarity=0.056 Sum_probs=96.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------CeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
...++.+|||+|||+|..+..++..++.+|+++|+++.+ +.+.++|+.++++++++||+|++..+.+
T Consensus 90 ~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 90 PGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp TTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccc
Confidence 346778999999999999999887755599999999873 3488999999999899999999999888
Q ss_pred hh-CH--HHHHHHHHhccccCcEEEEEeecCC-------------cccHHHHHHHHhcCceeEeeeeee
Q 027039 160 AL-FP--SRFVGEMERTVKIGGVCMVLMEECA-------------GREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 160 ~~-~~--~~~l~~~~~~LkpgG~lil~~~~~~-------------~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
|+ ++ .++++++++.|||||.+++...... ..+...+.++|++++|.-++.-..
T Consensus 170 hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred ccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEee
Confidence 88 44 4789999999999999887543221 114678899999888866665443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=4.3e-16 Score=126.17 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=81.6
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCce
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAF 149 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~f 149 (229)
++..+.......++.+|||||||+|..+..+++.|. +|+|+|+|+.+ +.++++|+++++++ ++|
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~f 106 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEF 106 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCE
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhcccc-ccc
Confidence 344444444557778999999999999999999987 99999999873 45999999999986 589
Q ss_pred eEEEcc-cchhhh---CHHHHHHHHHhccccCcEEEEEeec
Q 027039 150 DVAFTA-HLAEAL---FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 150 D~V~~~-~~~~~~---~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|+|+|. .+.++. +..+++++++++|||||.+++.+..
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 999986 444444 3568999999999999999876543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=4.6e-16 Score=128.11 Aligned_cols=98 Identities=23% Similarity=0.282 Sum_probs=81.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcccchhhh
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL 161 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~ 161 (229)
...++.+|||||||+|.++..+++. +..+++|+|+|+. .+.+.++|+.++|+++++||+|++.+..++
T Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~- 159 (268)
T d1p91a_ 81 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK- 159 (268)
T ss_dssp SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC-
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH-
Confidence 4467889999999999999999988 4559999999987 355899999999999999999999765553
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHH
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l 198 (229)
++|+.|+|||||.+++.+... ....++.+.
T Consensus 160 -----~~e~~rvLkpgG~l~~~~p~~--~~l~el~~~ 189 (268)
T d1p91a_ 160 -----AEELARVVKPGGWVITATPGP--RHLMELKGL 189 (268)
T ss_dssp -----HHHHHHHEEEEEEEEEEEECT--TTTHHHHTT
T ss_pred -----HHHHHHHhCCCcEEEEEeeCC--cchHHHHHH
Confidence 578999999999999888763 334455544
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.63 E-value=1.2e-15 Score=122.08 Aligned_cols=89 Identities=9% Similarity=0.097 Sum_probs=73.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC---CCCeEEEecCCCCCCe----------------EEEcCCCCCCCCCCceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI---GVADVTGVELMDSLPL----------------VSRADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~---g~~~v~~vD~s~~~~~----------------~~~~d~~~~~~~~~~fD~V~ 153 (229)
.++++.+|||||||+|..+..+++. +..+|+|+|+|+.|++ +..+|..+.+ .+.+|+|+
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~ 113 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVI 113 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEE
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeE
Confidence 4589999999999999999999864 4459999999987433 4555665554 56899999
Q ss_pred cccchhhh---CHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEAL---FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~ 183 (229)
++.+.++. ++.+++++++++|||||.+++.
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeeeccccChhhHHHHHHHHHHhCCCCceeecc
Confidence 99777776 5789999999999999998876
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.62 E-value=1.6e-16 Score=123.61 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=86.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC---------------------------eEEEcCCCCCCC-
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP---------------------------LVSRADPHNLPF- 144 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~---------------------------~~~~~d~~~~~~- 144 (229)
.++++.+|||+|||+|..+..|+++|+ +|+|+|+|+.++ .+..+|..+++.
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 468999999999999999999999998 999999997632 477788887653
Q ss_pred CCCceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeecCC---------cccHHHHHHHHhc
Q 027039 145 FDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFRT 201 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~~---------~~~~~~l~~l~~~ 201 (229)
...+||+|++..+.+++. ...+++++.+.|||||.+++...... ..+..++.++|..
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~ 164 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG 164 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCC
Confidence 347899999998888774 36789999999999999887654432 1245667777763
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.62 E-value=5.3e-16 Score=126.39 Aligned_cols=94 Identities=15% Similarity=0.258 Sum_probs=78.5
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCCCC-CCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNLPF-FDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~-~~~~fD~V~~~ 155 (229)
..+++.+|||||||+|..+..+++.+.++|+|+|+|+.+ +.+.++|+...++ .+++||+|+|.
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 457899999999999999999998887799999999884 3388999987665 46789999998
Q ss_pred cchhhh-C----HHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEAL-F----PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~-~----~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
...++. . ...+++++.++|||||.+++.+..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 766665 3 257899999999999998876654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=8.1e-16 Score=123.97 Aligned_cols=126 Identities=15% Similarity=0.123 Sum_probs=94.4
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------CeEEEcCCCCC-CCCCCceeEEEc
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------PLVSRADPHNL-PFFDEAFDVAFT 154 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------~~~~~~d~~~~-~~~~~~fD~V~~ 154 (229)
+...+++|++|||+|||+|..+..+++. +.+.|+|+|+|+.+ +..+.+|.... ++.+..+|++++
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI 147 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence 3446799999999999999999999988 66799999999873 33667777663 355677777766
Q ss_pred ccchhhh-CHHHHHHHHHhccccCcEEEEEeecCCc-------ccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 155 AHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAG-------REIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 155 ~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
.+..++. ++..++.++.+.|||||.+++....... ...++..+.++..+|.-++.++....
T Consensus 148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py 216 (230)
T d1g8sa_ 148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPF 216 (230)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTT
T ss_pred eccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 5544444 6788999999999999998877544221 23455667788888877777766544
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.61 E-value=5e-16 Score=128.75 Aligned_cols=92 Identities=14% Similarity=0.228 Sum_probs=79.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-C-CCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-G-VADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g-~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+.++.+|||||||+|.++..+++. + ..+|+|+|+|+. .+.++++|+.+++++ ++||+|++++
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~ 102 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHA 102 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEeh
Confidence 3467889999999999999999986 3 358999999976 245889999999875 5799999999
Q ss_pred chhhh-CHHHHHHHHHhccccCcEEEEEee
Q 027039 157 LAEAL-FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 157 ~~~~~-~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+.+|+ +|..+++++.++|||||.+++..+
T Consensus 103 ~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 103 FLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99988 999999999999999999887653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=1.9e-15 Score=123.40 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=91.1
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------------eEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------------LVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------------~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.+++.+|||+|||+|..++++++.|. +|+|+|+++.++ .+.++|..+ .+++++||+|+++...+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence 47899999999999999999998886 899999999844 377777665 24568999999975444
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
...+++.++.++|||||++++.--. ......+.+.++..++..++.....++
T Consensus 196 --~l~~l~~~~~~~LkpGG~lilSgil--~~~~~~v~~~~~~~Gf~~~~~~~~~~W 247 (254)
T d2nxca1 196 --LHAALAPRYREALVPGGRALLTGIL--KDRAPLVREAMAGAGFRPLEEAAEGEW 247 (254)
T ss_dssp --HHHHHHHHHHHHEEEEEEEEEEEEE--GGGHHHHHHHHHHTTCEEEEEEEETTE
T ss_pred --cHHHHHHHHHHhcCCCcEEEEEecc--hhhHHHHHHHHHHCCCEEEEEEEECCE
Confidence 2466789999999999998863111 234567888899888887777776666
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5.2e-15 Score=118.78 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=88.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------------------------CeEEEcCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------------------------PLVSRADPH 140 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------------------------~~~~~~d~~ 140 (229)
.+.++.+|||+|||+|..+..|++.|+ +|+|+|+|+.+ +++.++|..
T Consensus 42 ~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 42 KGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 457889999999999999999999998 99999999853 347778877
Q ss_pred CCC-CCCCceeEEEcccchhhhC---HHHHHHHHHhccccCcEEEEEeecCC---------cccHHHHHHHHhcC
Q 027039 141 NLP-FFDEAFDVAFTAHLAEALF---PSRFVGEMERTVKIGGVCMVLMEECA---------GREIKQIVELFRTS 202 (229)
Q Consensus 141 ~~~-~~~~~fD~V~~~~~~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~~---------~~~~~~l~~l~~~~ 202 (229)
+++ ..++.||+|+...+.+++. ....++++.++|||||++++.+.... ..+..++.++|...
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~~ 195 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKI 195 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTTT
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcCC
Confidence 764 5678999999987777773 36789999999999999877765432 13567789999753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=2.6e-15 Score=124.91 Aligned_cols=103 Identities=17% Similarity=0.052 Sum_probs=81.7
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC-------------eEEEcCCCCCCCCCC
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------LVSRADPHNLPFFDE 147 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~-------------~~~~~d~~~~~~~~~ 147 (229)
...+..+.+...+++|.+|||||||.|.++..+++. |+ +|+|+++|+..+ ..+..+..+.++.++
T Consensus 47 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~ 125 (291)
T d1kpia_ 47 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDE 125 (291)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccc
Confidence 445566667778899999999999999999999877 87 999999998721 122222333456689
Q ss_pred ceeEEEcccchhhh-C---------HHHHHHHHHhccccCcEEEEEee
Q 027039 148 AFDVAFTAHLAEAL-F---------PSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 148 ~fD~V~~~~~~~~~-~---------~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
+||.|+|..+.+|+ + ...+++++.++|||||++++.+-
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 99999999888877 3 47899999999999999997653
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=2e-15 Score=123.74 Aligned_cols=120 Identities=20% Similarity=0.235 Sum_probs=93.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC------------------CCeEEEcCCCCC
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS------------------LPLVSRADPHNL 142 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~------------------~~~~~~~d~~~~ 142 (229)
.-...++....++||++|||+|||+|..+..|+.. +.++|+++|++++ .+.++++|+.+.
T Consensus 83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 33334445557899999999999999999999987 5679999999976 344888999988
Q ss_pred CCCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh-cCceeEee
Q 027039 143 PFFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR-TSRFVDAA 208 (229)
Q Consensus 143 ~~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~-~~~~~~~~ 208 (229)
++++++||.|++ + ..+|++++.++.++|||||++++..+. -.+...+.+.++ ...|..++
T Consensus 163 ~~~~~~fDaV~l-d---lp~P~~~l~~~~~~LkpGG~lv~~~P~--i~Qv~~~~~~l~~~~~f~~i~ 223 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-D---MLAPWEVLDAVSRLLVAGGVLMVYVAT--VTQLSRIVEALRAKQCWTEPR 223 (264)
T ss_dssp CCCTTCEEEEEE-E---SSCGGGGHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHHSSBCCCE
T ss_pred cccCCCcceEEE-e---cCCHHHHHHHHHhccCCCCEEEEEeCc--cChHHHHHHHHHHcCCeecce
Confidence 899999999987 2 236999999999999999998877665 445556666654 44565544
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.56 E-value=4.5e-15 Score=120.08 Aligned_cols=88 Identities=17% Similarity=0.255 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEEcc-cchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAFTA-HLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~~~-~~~~ 159 (229)
.++.+|||||||+|..+..+++.|. +|+|+|+|+.| ++++++|+.++++ +++||+|+|. +...
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeee
Confidence 4567999999999999999999987 99999999873 5589999998876 5799999975 3333
Q ss_pred hh----CHHHHHHHHHhccccCcEEEEEe
Q 027039 160 AL----FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 160 ~~----~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
++ ++.++++++++.|||||.+++.+
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 33 45679999999999999988654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=6.9e-15 Score=121.76 Aligned_cols=99 Identities=16% Similarity=0.056 Sum_probs=80.5
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC----------------CeEEEcCCCCCCC
Q 027039 82 AHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL----------------PLVSRADPHNLPF 144 (229)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~----------------~~~~~~d~~~~~~ 144 (229)
...+..+++...+++|.+|||||||.|.++..+++. |+ +|+|+|+|+.. +.+...|..+.
T Consensus 38 ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~-- 114 (280)
T d2fk8a1 38 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-- 114 (280)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--
Confidence 344556667778899999999999999999999887 77 99999999862 22444555443
Q ss_pred CCCceeEEEcccchhhh-C--HHHHHHHHHhccccCcEEEEEe
Q 027039 145 FDEAFDVAFTAHLAEAL-F--PSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~-~--~~~~l~~~~~~LkpgG~lil~~ 184 (229)
+++||.|++..+.+|+ . ...+++++.++|||||++++..
T Consensus 115 -~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 115 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 5799999999888888 3 3789999999999999998764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.55 E-value=1.1e-14 Score=114.08 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=76.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
...++.+|||+|||+|.++..++..+ .+|+++|+++. .+.+..+|..+ ++++++||+|+++
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~ 126 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITN 126 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEEC
T ss_pred CcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEc
Confidence 45789999999999999999999875 49999999976 24588888877 5678899999998
Q ss_pred cchhhh-C-HHHHHHHHHhccccCcEEEEEeecC
Q 027039 156 HLAEAL-F-PSRFVGEMERTVKIGGVCMVLMEEC 187 (229)
Q Consensus 156 ~~~~~~-~-~~~~l~~~~~~LkpgG~lil~~~~~ 187 (229)
...++. + ..++++++.+.|||||.+++++...
T Consensus 127 ~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 160 (194)
T d1dusa_ 127 PPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred ccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence 665544 3 3678999999999999998776653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.55 E-value=5.2e-15 Score=120.42 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=91.6
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCce
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAF 149 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~f 149 (229)
++....++||++|||+|||+|..+..++.. +.++|+++|.+++ .+++.++|+.+. +++++|
T Consensus 77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~f 155 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMY 155 (250)
T ss_dssp ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCE
T ss_pred HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccccee
Confidence 345567899999999999999999999986 5679999999986 345888888875 457899
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeee
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
|.|+++ ..+|.+++.++.++|||||++++.++. .++...+.+.++..+|..++-+
T Consensus 156 D~V~ld----~p~p~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~gf~~i~~~ 210 (250)
T d1yb2a1 156 DAVIAD----IPDPWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLSLSASGMHHLETV 210 (250)
T ss_dssp EEEEEC----CSCGGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHHSGGGTEEEEEEE
T ss_pred eeeeec----CCchHHHHHHHHHhcCCCceEEEEeCC--cChHHHHHHHHHHCCCceeEEE
Confidence 999973 225888999999999999998876665 4566777788888888766544
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=1.8e-14 Score=119.46 Aligned_cols=100 Identities=21% Similarity=0.139 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC----------------CCeEEEcCCCCCC
Q 027039 81 YAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS----------------LPLVSRADPHNLP 143 (229)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~----------------~~~~~~~d~~~~~ 143 (229)
.......+.++..+++|.+|||||||.|..+..+++. |+ +|+|+++|+. .+.+..+|..+++
T Consensus 47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 125 (285)
T d1kpga_ 47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD 125 (285)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc
Confidence 3455566677778899999999999999999998888 87 9999999976 3347777776664
Q ss_pred CCCCceeEEEcccchhhh---CHHHHHHHHHhccccCcEEEEEe
Q 027039 144 FFDEAFDVAFTAHLAEAL---FPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~---~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
++||.|++..+.+|+ +...+++++.++|||||++++.+
T Consensus 126 ---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 126 ---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp ---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 689999999888887 34789999999999999998754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.52 E-value=1.1e-14 Score=113.40 Aligned_cols=108 Identities=12% Similarity=0.023 Sum_probs=84.4
Q ss_pred cccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEc
Q 027039 91 KSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFT 154 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~ 154 (229)
...++++.+|||+|||+|..+..++..+ .+|+|+|+++. .++++++|+.+.+++...||.|++
T Consensus 28 ~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~ 106 (186)
T d1l3ia_ 28 LAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVV 106 (186)
T ss_dssp HHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEE
T ss_pred hcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEE
Confidence 3466899999999999999999998875 49999999976 345889999887777889999998
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCc
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSR 203 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~ 203 (229)
+...+ ...++++.+.+.|||||++++.... .++...+.+.++..+
T Consensus 107 ~~~~~--~~~~~~~~~~~~LkpgG~lvi~~~~--~e~~~~~~~~l~~~~ 151 (186)
T d1l3ia_ 107 GGSGG--ELQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLG 151 (186)
T ss_dssp SCCTT--CHHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTT
T ss_pred eCccc--cchHHHHHHHHHhCcCCEEEEEeec--cccHHHHHHHHHHcC
Confidence 74332 4678899999999999998755432 334455556666444
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.6e-14 Score=117.11 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeE---------------------------------------
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV--------------------------------------- 134 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~--------------------------------------- 134 (229)
..++.+|||||||+|..+..++..+..+|+|+|+|+.+++.
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 35678999999999999888877766689999999875431
Q ss_pred ------EE----cCCCCCCCCCCceeEEEcccchhhh-----CHHHHHHHHHhccccCcEEEEEeecCC-----------
Q 027039 135 ------SR----ADPHNLPFFDEAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEECA----------- 188 (229)
Q Consensus 135 ------~~----~d~~~~~~~~~~fD~V~~~~~~~~~-----~~~~~l~~~~~~LkpgG~lil~~~~~~----------- 188 (229)
.. .+....++++++||+|++..+.++. ++..+++++.++|||||.+++......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 11 1122235778999999999887776 346789999999999999987654321
Q ss_pred --cccHHHHHHHHhcCceeE
Q 027039 189 --GREIKQIVELFRTSRFVD 206 (229)
Q Consensus 189 --~~~~~~l~~l~~~~~~~~ 206 (229)
..+.+++.++++..+|..
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEE
T ss_pred ccCCCHHHHHHHHHHCCCEE
Confidence 236788999999999863
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=5.8e-14 Score=112.63 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=75.4
Q ss_pred hcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC-------------CeEEEcCCCC---CCCCCCceeE
Q 027039 90 GKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL-------------PLVSRADPHN---LPFFDEAFDV 151 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~-------------~~~~~~d~~~---~~~~~~~fD~ 151 (229)
+...++||++|||+|||+|..+..+++. +.+.|+|+|+++.+ +..+..|... .+.....+|+
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEE
Confidence 3446799999999999999999999998 46799999999873 3366677654 3345578999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|++. +.+...+..++.++.+.|||||+++++...
T Consensus 147 i~~d-~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 147 IFED-VAQPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEC-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEE-ccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence 8873 333335788999999999999999887643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=1.6e-14 Score=114.60 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=73.3
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------CeEEEcCCCCCCCCCC---ceeEEEc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------PLVSRADPHNLPFFDE---AFDVAFT 154 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~---~fD~V~~ 154 (229)
..++|+++|||+|||+|..+..+++. |.++|+|+|+++.+ +.++.+|....+.... .+|+|++
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEe
Confidence 45799999999999999999999987 76799999999873 4488888887654443 4555543
Q ss_pred ccchhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 155 AHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.+.+..++..+++++.+.|||||.+++...
T Consensus 132 -~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 132 -DIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp -CCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 233434678899999999999999987764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.48 E-value=1.8e-13 Score=111.33 Aligned_cols=119 Identities=16% Similarity=0.071 Sum_probs=90.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+.+..+|||||||+|..+..+++. +..+++++|+++. .+.++.+|+.+. . ..+||+|++.+
T Consensus 77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~D~v~~~~ 154 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-PRKADAIILSF 154 (253)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SSCEEEEEEES
T ss_pred CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-c-ccchhheeecc
Confidence 4567789999999999999999988 6669999998532 356888998653 2 35799999999
Q ss_pred chhhhC-H--HHHHHHHHhccccCcEEEEEeecC-----------------------CcccHHHHHHHHhcCceeEeeee
Q 027039 157 LAEALF-P--SRFVGEMERTVKIGGVCMVLMEEC-----------------------AGREIKQIVELFRTSRFVDAANV 210 (229)
Q Consensus 157 ~~~~~~-~--~~~l~~~~~~LkpgG~lil~~~~~-----------------------~~~~~~~l~~l~~~~~~~~~~~~ 210 (229)
+.++.. + .+++++++++|||||++++.-... ..++..++.+++...+|..++..
T Consensus 155 vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~ 234 (253)
T d1tw3a2 155 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 234 (253)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 888873 3 478999999999999988652211 12256778889999998765544
Q ss_pred eec
Q 027039 211 TVN 213 (229)
Q Consensus 211 ~~~ 213 (229)
..+
T Consensus 235 ~~~ 237 (253)
T d1tw3a2 235 QLP 237 (253)
T ss_dssp EEE
T ss_pred ECC
Confidence 433
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.6e-14 Score=117.72 Aligned_cols=93 Identities=11% Similarity=0.020 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC------C-CCeEEEecCCCCCCe------------------EEEcCCC------CC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI------G-VADVTGVELMDSLPL------------------VSRADPH------NL 142 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~------g-~~~v~~vD~s~~~~~------------------~~~~d~~------~~ 142 (229)
.+++.+|||||||+|.++..++.. + ...++|+|+|+.++. +...+++ ..
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence 355668999999999988877543 1 236899999977432 2222221 12
Q ss_pred CCCCCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 143 PFFDEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 143 ~~~~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++++++||+|++.++.+|. ++.++++++.++|||||.+++.+..
T Consensus 118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 4668999999999999888 8999999999999999998877654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.7e-13 Score=112.63 Aligned_cols=125 Identities=14% Similarity=0.183 Sum_probs=96.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc--c
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA--H 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~--~ 156 (229)
+.+.+|||+|||+|..+..++.. +..+|+++|+|+. .+.++++|..+ ++++++||+|+|| +
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence 56788999999999999999876 7779999999987 35688899876 3456799999998 3
Q ss_pred chhh-----------------------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 157 LAEA-----------------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 157 ~~~~-----------------------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+... . ...+++.++.+.|+|||.+++.++. ...+.+.+++...+|..++-+..
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~---~q~~~v~~~l~~~gf~~i~~~kD 262 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---QQGEAVRQAFILAGYHDVETCRD 262 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---SCHHHHHHHHHHTTCTTCCEEEC
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc---hHHHHHHHHHHHCCCCeEEEEEC
Confidence 2110 0 1256889999999999998886654 44577888888888887777766
Q ss_pred cCCeeEEEEEE
Q 027039 213 NGSNMTRILMR 223 (229)
Q Consensus 213 ~~~~~~~~~~~ 223 (229)
.....|.++.+
T Consensus 263 l~g~~R~v~~r 273 (274)
T d2b3ta1 263 YGDNERVTLGR 273 (274)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCceEEEEe
Confidence 66666777655
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=6.8e-14 Score=111.26 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=73.8
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeE
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDV 151 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~ 151 (229)
++...++++.+|||||||+|..+..+++. +.+.|+++|+++. .+.++++|..+.++.+++||+
T Consensus 68 l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~ 147 (213)
T d1dl5a1 68 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDV 147 (213)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred HHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhh
Confidence 34446799999999999999999999886 3568999999987 334778898887777889999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|++....++. | +++.+.|||||++++.+..
T Consensus 148 I~~~~~~~~~-p----~~l~~~LkpGG~lv~pv~~ 177 (213)
T d1dl5a1 148 IFVTVGVDEV-P----ETWFTQLKEGGRVIVPINL 177 (213)
T ss_dssp EEECSBBSCC-C----HHHHHHEEEEEEEEEEBCB
T ss_pred hhhhccHHHh-H----HHHHHhcCCCcEEEEEECc
Confidence 9998655543 2 3467889999998876643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.7e-14 Score=115.90 Aligned_cols=89 Identities=16% Similarity=0.012 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------------EEEcCCCC--CCCCCCceeEEEcc---
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHN--LPFFDEAFDVAFTA--- 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------------~~~~d~~~--~~~~~~~fD~V~~~--- 155 (229)
.+|.+|||||||+|..+..+++.+..+++|+|+++.+++ ++.+++.. .++++++||.|+..
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 678999999999999999999885458999999987432 44555443 35678899999843
Q ss_pred --cchhhh-CHHHHHHHHHhccccCcEEEEE
Q 027039 156 --HLAEAL-FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 --~~~~~~-~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...+|. ++..+++++.|+|||||.+++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 444444 7889999999999999998753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=5e-14 Score=116.89 Aligned_cols=89 Identities=20% Similarity=0.289 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-------------------EEEcCCCC----CCCCCCceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL-------------------VSRADPHN----LPFFDEAFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~-------------------~~~~d~~~----~~~~~~~fD~ 151 (229)
+++.+|||+|||+|..+..|++.|. +|+|+|+|+.+++ +...+... .| ..++||.
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceE
Confidence 4678999999999999999999987 9999999988543 33333322 22 3578999
Q ss_pred EEcc-cchhhh-C-------HHHHHHHHHhccccCcEEEEEee
Q 027039 152 AFTA-HLAEAL-F-------PSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 152 V~~~-~~~~~~-~-------~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
|++. .+..|+ + ...+++++.++|||||.+++.+.
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 9975 344443 2 46799999999999999887654
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=6.4e-14 Score=114.97 Aligned_cols=121 Identities=11% Similarity=0.135 Sum_probs=92.4
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCC----------------eEEEcCCCCCCCC
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLP----------------LVSRADPHNLPFF 145 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~----------------~~~~~d~~~~~~~ 145 (229)
-...++....+++|++|||+|||+|..+..+++. +.++|+++|+++.++ .+...|+.. .++
T Consensus 91 d~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~ 169 (266)
T d1o54a_ 91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFD 169 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCS
T ss_pred HHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-ccc
Confidence 3334445557899999999999999999999876 457999999998732 255555433 355
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeee
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
...||.|+. + ..+|.+++.++.++|||||++++..+. .++.+++.+.++..+|..++-++
T Consensus 170 ~~~~D~V~~-d---~p~p~~~l~~~~~~LKpGG~lv~~~P~--~~Qv~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 170 EKDVDALFL-D---VPDPWNYIDKCWEALKGGGRFATVCPT--TNQVQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp CCSEEEEEE-C---CSCGGGTHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHSSEEEEEEEC
T ss_pred ccceeeeEe-c---CCCHHHHHHHHHhhcCCCCEEEEEeCc--ccHHHHHHHHHHHCCceeEEEEE
Confidence 678999876 2 226899999999999999998877765 55677788888888887666543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=5.1e-13 Score=112.64 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||||||+|.++..+++.|..+|+|+|.++. .+.++++|..++++++++||+|++.-+..
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 478999999999999999999998889999999864 34589999999999999999999864333
Q ss_pred hh----CHHHHHHHHHhccccCcEEE
Q 027039 160 AL----FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 160 ~~----~~~~~l~~~~~~LkpgG~li 181 (229)
+. ....++.++.++|||||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 22 56888999999999999864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.3e-13 Score=112.84 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe-----------------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL----------------------------------------- 133 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~----------------------------------------- 133 (229)
..+.++||||||+|..+...+.....+|+|+|+|+.+++
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 568899999999998876555554559999999988443
Q ss_pred ----EEEcCCCC------CCCCCCceeEEEcccchhhh-----CHHHHHHHHHhccccCcEEEEEeecCC----------
Q 027039 134 ----VSRADPHN------LPFFDEAFDVAFTAHLAEAL-----FPSRFVGEMERTVKIGGVCMVLMEECA---------- 188 (229)
Q Consensus 134 ----~~~~d~~~------~~~~~~~fD~V~~~~~~~~~-----~~~~~l~~~~~~LkpgG~lil~~~~~~---------- 188 (229)
....|+.+ .+.++++||+|++..+.++. ++..+++++.++|||||.+++......
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~ 212 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence 22344433 23456789999999888776 257789999999999999987644211
Q ss_pred ---cccHHHHHHHHhcCceeEee
Q 027039 189 ---GREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 189 ---~~~~~~l~~l~~~~~~~~~~ 208 (229)
..+.+++.+++.+.+|..+.
T Consensus 213 ~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 213 TVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCeEEE
Confidence 23778999999999986543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.3e-13 Score=113.52 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=86.4
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC--------------------------CCeEEEcCCC
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS--------------------------LPLVSRADPH 140 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~--------------------------~~~~~~~d~~ 140 (229)
+....++||++|||+|||+|.++..|+.. +.++|+++|++++ .+.+.++|+.
T Consensus 91 l~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~ 170 (324)
T d2b25a1 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS 170 (324)
T ss_dssp HHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred HHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchh
Confidence 33447799999999999999999999987 5679999999864 3458888888
Q ss_pred CCC--CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhc--CceeEeeee
Q 027039 141 NLP--FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRT--SRFVDAANV 210 (229)
Q Consensus 141 ~~~--~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~--~~~~~~~~~ 210 (229)
+.. +++..||.|+. ++ .+|..++.++.++|||||++++.++. -.+...+.+.++. .+|..++-+
T Consensus 171 ~~~~~~~~~~fD~V~L-D~---p~P~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~~~~f~~i~~~ 238 (324)
T d2b25a1 171 GATEDIKSLTFDAVAL-DM---LNPHVTLPVFYPHLKHGGVCAVYVVN--ITQVIELLDGIRTCELALSCEKIS 238 (324)
T ss_dssp CCC-------EEEEEE-CS---SSTTTTHHHHGGGEEEEEEEEEEESS--HHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hcccccCCCCcceEee-cC---cCHHHHHHHHHHhccCCCEEEEEeCC--HHHHHHHHHHHHHcCCCceeeEEE
Confidence 754 45678999986 22 25888999999999999998877765 4556667776763 356666544
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=8.4e-14 Score=117.60 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=79.6
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC------------------------CCeEEEcCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------------------------LPLVSRADP 139 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~------------------------~~~~~~~d~ 139 (229)
+..+++...++++.+|||||||+|..+..++.. |+.+++|+|+++. .+.++++|+
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 334445557799999999999999999998876 7778999999975 356899999
Q ss_pred CCCCCCCCce--eEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 140 HNLPFFDEAF--DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 140 ~~~~~~~~~f--D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.+.++.+..+ |+|+++.+.+..++...+.++.+.|||||++++.
T Consensus 220 ~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 220 LSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp TSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 9988766544 6788776554446788999999999999997743
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=4.6e-13 Score=112.35 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
.++.+|||||||+|.++..+++.|..+|+|+|.++. .+.++++|..+++++.++||+|++..+.+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 578999999999999999999998779999999876 35588999999999889999999864433
Q ss_pred hh----CHHHHHHHHHhccccCcEEE
Q 027039 160 AL----FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 160 ~~----~~~~~l~~~~~~LkpgG~li 181 (229)
.+ ....++..+.+.|||||.++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 33 46889999999999999875
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.39 E-value=1.5e-12 Score=106.01 Aligned_cols=118 Identities=21% Similarity=0.134 Sum_probs=90.0
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~ 156 (229)
.+.+..+|||||||+|..+..+++. +..+++++|+.+. .+.++.+|..+ +.+ ..||+|++.+
T Consensus 78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~ 155 (256)
T d1qzza2 78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF 155 (256)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES
T ss_pred CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc
Confidence 4567789999999999999999988 6679999997432 34577788765 333 4699999999
Q ss_pred chhhhCH---HHHHHHHHhccccCcEEEEEeec---C---------------------CcccHHHHHHHHhcCceeEeee
Q 027039 157 LAEALFP---SRFVGEMERTVKIGGVCMVLMEE---C---------------------AGREIKQIVELFRTSRFVDAAN 209 (229)
Q Consensus 157 ~~~~~~~---~~~l~~~~~~LkpgG~lil~~~~---~---------------------~~~~~~~l~~l~~~~~~~~~~~ 209 (229)
+.|+... .+++++++++|||||+++++-.. . ..++..++.++++..+|..++.
T Consensus 156 vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~ 235 (256)
T d1qzza2 156 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 235 (256)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEE
Confidence 9888743 57899999999999998865321 0 1224577888999999977776
Q ss_pred eee
Q 027039 210 VTV 212 (229)
Q Consensus 210 ~~~ 212 (229)
...
T Consensus 236 ~~~ 238 (256)
T d1qzza2 236 RTS 238 (256)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.39 E-value=2.1e-13 Score=107.65 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCC--CCCCceeEEEcccc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLP--FFDEAFDVAFTAHL 157 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~~ 157 (229)
++..|||||||+|..+..+|+. +...++|+|+++. .+.++.+|+..+. ++++++|.|++++.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 4557999999999999999988 7779999999876 3558999988765 78899999998743
Q ss_pred hhhh---------CHHHHHHHHHhccccCcEEEEEeec
Q 027039 158 AEAL---------FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 158 ~~~~---------~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..+. .-.+++++++++|||||.+++.++.
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~ 146 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 3222 1258999999999999999877643
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=8.3e-13 Score=110.44 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=74.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
...++.+|||||||+|.++..+++.|..+|+|+|.++. .+.++++|..++++++++||+|++..+
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 33578999999999999999999998779999999986 345899999999998899999999744
Q ss_pred hhhh----CHHHHHHHHHhccccCcEEE
Q 027039 158 AEAL----FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 158 ~~~~----~~~~~l~~~~~~LkpgG~li 181 (229)
.++. .+..++....+.|||||.++
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEe
Confidence 4433 35677788889999999876
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=4.3e-13 Score=107.31 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=72.6
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCC--------------------CeEEEcCCCCCCCCCCcee
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSL--------------------PLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~--------------------~~~~~~d~~~~~~~~~~fD 150 (229)
.++++.+|||||||+|+.+..+++. +.++|+++|+++++ +.++.+|....+.++++||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 4589999999999999999999887 45699999999862 3478889888777788999
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.|++....++. | .++.+.|||||++++.+..
T Consensus 153 ~I~~~~~~~~i-p----~~l~~~LkpGG~LV~pv~~ 183 (224)
T d1i1na_ 153 AIHVGAAAPVV-P----QALIDQLKPGGRLILPVGP 183 (224)
T ss_dssp EEEECSBBSSC-C----HHHHHTEEEEEEEEEEESC
T ss_pred hhhhhcchhhc-C----HHHHhhcCCCcEEEEEEcc
Confidence 99998655543 2 3577899999999987754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.31 E-value=2e-12 Score=103.21 Aligned_cols=89 Identities=19% Similarity=0.116 Sum_probs=70.8
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCceeEEEcccch
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~ 158 (229)
..++++.+|||||||+|+.+..+++.+ ++|+++|+++. .+.++.+|......++++||.|++....
T Consensus 66 L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~ 144 (224)
T d1vbfa_ 66 LDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATA 144 (224)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred hhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcch
Confidence 367999999999999999999999885 59999999876 4568889887644456889999987544
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++. | ..+.+.|||||++++.+..
T Consensus 145 ~~i-p----~~l~~qLk~GGrLV~pvg~ 167 (224)
T d1vbfa_ 145 PTL-L----CKPYEQLKEGGIMILPIGV 167 (224)
T ss_dssp SSC-C----HHHHHTEEEEEEEEEEECS
T ss_pred hhh-h----HHHHHhcCCCCEEEEEEcC
Confidence 432 2 3466789999999987764
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.28 E-value=4.7e-12 Score=99.72 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCC--CCCCceeEEEcccc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLP--FFDEAFDVAFTAHL 157 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~--~~~~~fD~V~~~~~ 157 (229)
....|||||||+|..+..+|+. +...++|+|+++. .+.+..+|+..+. ++++++|.|++++-
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 4557999999999999999998 7779999999976 4558999998865 77899999998743
Q ss_pred hh-----hh----CHHHHHHHHHhccccCcEEEEEeec
Q 027039 158 AE-----AL----FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 158 ~~-----~~----~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.. |. ...++++.+.++|||||.+++.++.
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~ 148 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 148 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 21 11 2378999999999999999877753
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.22 E-value=7e-11 Score=95.35 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=98.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCC--------CCCeEEEcCCCCCCCCCCceeEEEcccchhhhC--
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMD--------SLPLVSRADPHNLPFFDEAFDVAFTAHLAEALF-- 162 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~-- 162 (229)
+....+|||||||+|..+.++++. |..+++..|+.+ ..++++.+|+.+ +.+ ..|++++.++.|...
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~de 155 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSDE 155 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCHH
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCHH
Confidence 466789999999999999999988 777999999753 256688899875 233 459999998888773
Q ss_pred -HHHHHHHHHhccccCcEEEEEeec---C-----------------------CcccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 163 -PSRFVGEMERTVKIGGVCMVLMEE---C-----------------------AGREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 163 -~~~~l~~~~~~LkpgG~lil~~~~---~-----------------------~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
-.++++++++.|+|||+++++=.. . ..++..++.++++..+|..++-+...++
T Consensus 156 ~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~ 235 (244)
T d1fp1d2 156 KCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFN 235 (244)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETT
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCC
Confidence 367899999999999998865321 1 1234678889999999998887777666
Q ss_pred eeEEEEEEe
Q 027039 216 NMTRILMRR 224 (229)
Q Consensus 216 ~~~~~~~~~ 224 (229)
..-+|..+|
T Consensus 236 ~~~viE~~K 244 (244)
T d1fp1d2 236 SLGVMEFYK 244 (244)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 666666554
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=3.1e-12 Score=110.31 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=70.7
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe-------------------------EEEcCCC
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL-------------------------VSRADPH 140 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~-------------------------~~~~d~~ 140 (229)
.++....+++++++||||||.|..+..++.. |+.+++|+|+++.+++ ...++..
T Consensus 207 ~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~ 286 (406)
T d1u2za_ 207 DVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286 (406)
T ss_dssp HHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence 3344447799999999999999999999987 8879999999987433 1233333
Q ss_pred CCCCC---CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 141 NLPFF---DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 141 ~~~~~---~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
..+.. -..+|+|+++...+..+....+.++.+.|||||+++.
T Consensus 287 ~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 287 DNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp TCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred hccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEE
Confidence 32211 1357888887654433668899999999999999774
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=7e-11 Score=96.24 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=87.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCceeEEEcccc
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFDVAFTAHL 157 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 157 (229)
.+++.+|||+|||+|.++..++..|.++|+++|+++. .+.++++|+.+++. ++.||.|+++..
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence 3899999999999999999999887669999999987 35588999988764 578999998743
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEEee--cC--CcccHHHHHHHHhcC----ceeEeeeeeecCCeeEEEE
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVLME--EC--AGREIKQIVELFRTS----RFVDAANVTVNGSNMTRIL 221 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~~~--~~--~~~~~~~l~~l~~~~----~~~~~~~~~~~~~~~~~~~ 221 (229)
.. ...++.++.+.|||||.+.+..- .. .....+.+.+..+.. +...++.++.++.+...++
T Consensus 184 ~~---~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~~~~Vk~yaP~~~~v~ 252 (260)
T d2frna1 184 VR---THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVV 252 (260)
T ss_dssp SS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEEEEE
T ss_pred Cc---hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEEEEEEECcCCCccEEE
Confidence 33 34567788899999998754321 21 122334455554432 3344556667765544433
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.13 E-value=4.8e-11 Score=94.51 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=71.2
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..++++.+|||||||+|+.+..++.. | ++|+++|.++. .+.++++|..+....+++||.|++.
T Consensus 74 L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~ 152 (215)
T d1jg1a_ 74 ANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVT 152 (215)
T ss_dssp HTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred hccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEee
Confidence 36799999999999999999999987 6 48999999976 4569999988855567899999987
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
....+. |.. +.+.|||||++++.+..
T Consensus 153 ~a~~~i-p~~----l~~qL~~gGrLv~pv~~ 178 (215)
T d1jg1a_ 153 AGAPKI-PEP----LIEQLKIGGKLIIPVGS 178 (215)
T ss_dssp SBBSSC-CHH----HHHTEEEEEEEEEEECS
T ss_pred cccccC-CHH----HHHhcCCCCEEEEEEcc
Confidence 444322 333 55679999999887765
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=5.1e-10 Score=87.87 Aligned_cols=124 Identities=12% Similarity=0.133 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~ 159 (229)
++.+++|+|+|.|..+..++-. +..+++.+|.+.. .+.+++.++++.. .+.+||+|++.++..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~~ 143 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFAS 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSSS
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhcC
Confidence 4579999999999999999986 7779999999876 4568888888875 356899999988776
Q ss_pred hhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCe--eEEEEEEecc
Q 027039 160 ALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSN--MTRILMRRTR 226 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 226 (229)
...++.-+.+.+++||.+++.-+. ...+++..+-+++.+..+..++.+... ...++.++.|
T Consensus 144 ---~~~ll~~~~~~l~~~g~~~~~KG~---~~~eEl~~~~~~~~~~~~~~~~~p~~~~~R~iv~ikk~k 206 (207)
T d1jsxa_ 144 ---LNDMVSWCHHLPGEQGRFYALKGQ---MPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKANK 206 (207)
T ss_dssp ---HHHHHHHHTTSEEEEEEEEEEESS---CCHHHHHTSCTTEEEEEEEEEECC--CCEEEEEEEEECC
T ss_pred ---HHHHHHHHHHhcCCCcEEEEECCC---CHHHHHHhhhcCCEEEEEEEecCCCCCCcEEEEEEEecc
Confidence 888899999999999998866654 334556555556677777777766443 3444445444
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.10 E-value=6.6e-11 Score=94.25 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=69.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC----C---CCeEEEecCCCC--------------------CCeEEEcCCCCCCCC
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI----G---VADVTGVELMDS--------------------LPLVSRADPHNLPFF 145 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~----g---~~~v~~vD~s~~--------------------~~~~~~~d~~~~~~~ 145 (229)
.++++.+|||||||+|+.+..+++. | ..+|+++|.+++ .+.+.++|..+...+
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 4689999999999999999888876 2 237999999876 345888998886666
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+++||.|++....++. | ..+.+.|||||++++.+..
T Consensus 157 ~~~fD~Iiv~~a~~~~-p----~~l~~~Lk~gG~lV~pvg~ 192 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPDT-P----TELINQLASGGRLIVPVGP 192 (223)
T ss_dssp GCSEEEEEECSCBSSC-C----HHHHHTEEEEEEEEEEESC
T ss_pred ccceeeEEEEeechhc-h----HHHHHhcCCCcEEEEEEec
Confidence 7899999987544433 2 2467899999999877764
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=5.6e-11 Score=99.80 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCC----CCCCCCceeEEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHN----LPFFDEAFDVAF 153 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~----~~~~~~~fD~V~ 153 (229)
.+++.+|||+|||+|.++..++..|..+|+++|+++. .+.++++|+.+ ++..+.+||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4789999999999999999999888779999999987 23478888765 233567999999
Q ss_pred ccc--ch-------hhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHH
Q 027039 154 TAH--LA-------EAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVEL 198 (229)
Q Consensus 154 ~~~--~~-------~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l 198 (229)
++- +. ... ...+++..+.++|||||.+++++.. ...+.+++.+.
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s-~~~~~~~f~~~ 276 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS-QHVDLQMFKDM 276 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC-TTSCHHHHHHH
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC-ccCCHHHHHHH
Confidence 861 11 111 3466889999999999998866543 33344444443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=99.01 E-value=1e-09 Score=87.89 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC---------------CCeEEEcCCCCCCC---CCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS---------------LPLVSRADPHNLPF---FDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~---~~~~fD~V~~~ 155 (229)
....+++|||+|.|..++.++-. +..+++.+|.+.. .+.+++..+++.+. ..++||+|++.
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 35679999999999999999985 7779999999876 34466777665432 24689999998
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHh--cCceeEeeeeeecCCe--eEEEEEEecc
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFR--TSRFVDAANVTVNGSN--MTRILMRRTR 226 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~ 226 (229)
++.. ...++.-....+++||.+++.-+....++.++....++ +.+...+..++.+... ...+++++.+
T Consensus 149 Ava~---l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 149 AVAR---LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp CCSC---HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred hhhC---HHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEECC
Confidence 8777 88899999999999999987777655555555555555 3455567777765433 3455555433
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=4e-10 Score=92.04 Aligned_cols=122 Identities=12% Similarity=0.178 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCCC-CCCCCceeEEEcc--c
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHNL-PFFDEAFDVAFTA--H 156 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~~-~~~~~~fD~V~~~--~ 156 (229)
+..+++|+|||+|..+..++..+..+|+++|+|+.. +.+..+|..+. +...++||+|+|| +
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY 189 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 189 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccc
Confidence 456899999999999999987777799999999872 23667777663 3334799999999 2
Q ss_pred chhhh--------CH----------HHHHHH-HHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeecCCee
Q 027039 157 LAEAL--------FP----------SRFVGE-MERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVNGSNM 217 (229)
Q Consensus 157 ~~~~~--------~~----------~~~l~~-~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 217 (229)
+...- .| ..++++ +.+.|+|||.+++.++. +..+.+.++|.+.+|. .......
T Consensus 190 I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~---~Q~~~v~~l~~~~g~~-----kDl~g~~ 261 (271)
T d1nv8a_ 190 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE---DQVEELKKIVSDTVFL-----KDSAGKY 261 (271)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT---TCHHHHTTTSTTCEEE-----ECTTSSE
T ss_pred cCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH---HHHHHHHHHHHhCCEE-----eccCCCc
Confidence 21110 12 123333 45789999998877764 4456778888888773 3444555
Q ss_pred EEEEEEec
Q 027039 218 TRILMRRT 225 (229)
Q Consensus 218 ~~~~~~~~ 225 (229)
|.++++|+
T Consensus 262 R~~~~~k~ 269 (271)
T d1nv8a_ 262 RFLLLNRR 269 (271)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEc
Confidence 77776654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.8e-09 Score=85.99 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=86.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC----------------eEEEcCCCCC------CCCCCceeE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP----------------LVSRADPHNL------PFFDEAFDV 151 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~----------------~~~~~d~~~~------~~~~~~fD~ 151 (229)
.+..++||+|||+|..+..++.. +..+++|+|+++.++ .+++.+.... ...+++||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 44568999999999999999887 556999999998732 2455444332 123578999
Q ss_pred EEcc--cchhh---------------------------------h-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHH
Q 027039 152 AFTA--HLAEA---------------------------------L-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQI 195 (229)
Q Consensus 152 V~~~--~~~~~---------------------------------~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l 195 (229)
|+|| ++... . +..+++++....++..|++...++. .....++
T Consensus 140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~--~~~l~~i 217 (250)
T d2h00a1 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGK--KCSLAPL 217 (250)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESS--TTSHHHH
T ss_pred EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecc--hhhHHHH
Confidence 9999 22110 0 1234567777889999997766664 4567788
Q ss_pred HHHHhcCceeEeeeeee-cCCeeEEEE
Q 027039 196 VELFRTSRFVDAANVTV-NGSNMTRIL 221 (229)
Q Consensus 196 ~~l~~~~~~~~~~~~~~-~~~~~~~~~ 221 (229)
..++++.++..++.+.. .|...+.++
T Consensus 218 ~~~L~~~g~~~i~~ie~~qG~~~r~ii 244 (250)
T d2h00a1 218 KEELRIQGVPKVTYTEFCQGRTMRWAL 244 (250)
T ss_dssp HHHHHHTTCSEEEEEEEEETTEEEEEE
T ss_pred HHHHHHcCCCeEEEEEecCCCEeEEEE
Confidence 88888888877776644 476655554
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.97 E-value=2.4e-10 Score=85.51 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC----------------CeEEEcCCCC-CCCCCCceeEEEcccch
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL----------------PLVSRADPHN-LPFFDEAFDVAFTAHLA 158 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~----------------~~~~~~d~~~-~~~~~~~fD~V~~~~~~ 158 (229)
.+.+|||+|||+|.++.+.+.+|..+|+++|.++.. ..++++|+.. ++...++||+|++.--.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 688999999999999999988988899999999772 4478888776 34557899999996221
Q ss_pred hhhCHHHHHHHHH--hccccCcEEEEEeec
Q 027039 159 EALFPSRFVGEME--RTVKIGGVCMVLMEE 186 (229)
Q Consensus 159 ~~~~~~~~l~~~~--~~LkpgG~lil~~~~ 186 (229)
........+..+. +.|+|||.+++....
T Consensus 94 ~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 94 AKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 2112344455443 579999998865443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.93 E-value=2.5e-10 Score=95.53 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCC----CCCCCCceeEEEcc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHN----LPFFDEAFDVAFTA 155 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~----~~~~~~~fD~V~~~ 155 (229)
.++.+|||++||+|.++.+++.. ..+|+++|+|+.+ +.++++|+.+ ++...++||+|+++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 46899999999999999998754 4599999999872 3478888765 23446799999986
Q ss_pred c---------chhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHH
Q 027039 156 H---------LAEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE 197 (229)
Q Consensus 156 ~---------~~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~ 197 (229)
- ..... ...+++..+.++|||||.+++.+.. ..-+..++.+
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs-~~~~~~~f~~ 273 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS-HHMTEPLFYA 273 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC-TTSCHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC-cccCHHHHHH
Confidence 1 11111 3467889999999999998855443 2334344433
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.90 E-value=1.7e-08 Score=80.86 Aligned_cols=118 Identities=13% Similarity=0.030 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC--------CCeEEEcCCCCCCCCCCceeEEEcccchhhh---C
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS--------LPLVSRADPHNLPFFDEAFDVAFTAHLAEAL---F 162 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~---~ 162 (229)
+...+|+|||||+|..+..+++. |..+++..|+.+. .+.++.+|..+ +.+. .|+++..++.+.. +
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~ 156 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEH 156 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHHH
Confidence 44678999999999999999998 7779999998654 45588888865 2332 4566666665544 3
Q ss_pred HHHHHHHHHhccccCcEEEEEeec---------------------------CCcccHHHHHHHHhcCceeEeeeeeecCC
Q 027039 163 PSRFVGEMERTVKIGGVCMVLMEE---------------------------CAGREIKQIVELFRTSRFVDAANVTVNGS 215 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~lil~~~~---------------------------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 215 (229)
...+++++++.|+|||+++++-.. ..+.+.+++.+++...+|..++-+...+.
T Consensus 157 ~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~ 236 (243)
T d1kyza2 157 CLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFN 236 (243)
T ss_dssp HHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETT
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 478999999999999998865211 11234667888888888877765544443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.90 E-value=2.8e-09 Score=82.98 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.|.+|||+|||+|.++..++..|..+|+|+|+++. .++++.+|+.+++ ++||+|++|
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeC
Confidence 58999999999999999988888779999999987 3569999988764 789999998
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.87 E-value=2e-09 Score=83.55 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=63.1
Q ss_pred CCCCeEEEEcCCCChhhHHHH----hC----C-CCeEEEecCCCCCCe--------------------------------
Q 027039 95 FNHSKVLCVSAGAGHEVMAFN----SI----G-VADVTGVELMDSLPL-------------------------------- 133 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~----~~----g-~~~v~~vD~s~~~~~-------------------------------- 133 (229)
.+..+|+++|||+|..+..++ +. + .-+++|+|+++..++
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 456799999999998665543 21 1 127999999976211
Q ss_pred --------------EEEcCCCC-CCCCCCceeEEEcccchhhhCH---HHHHHHHHhccccCcEEEEE
Q 027039 134 --------------VSRADPHN-LPFFDEAFDVAFTAHLAEALFP---SRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 134 --------------~~~~d~~~-~~~~~~~fD~V~~~~~~~~~~~---~~~l~~~~~~LkpgG~lil~ 183 (229)
+...+... .+.+.+.||+|+|.++..++++ .++++.+++.|+|||.+++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 22222222 2234578999999999988854 57999999999999996643
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.87 E-value=1.9e-09 Score=89.92 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCC----CCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNL----PFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~----~~~~~~fD~V~ 153 (229)
.++.+|||+.||+|.++.+.+..|...|+++|+++. ..+++++|+.+. .-..++||+|+
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 689999999999999999988888889999999987 234788887542 22356899999
Q ss_pred cc--cc-------hhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TA--HL-------AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~--~~-------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+. .+ .... +..++++.+.++|+|||.+++.+..
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 86 11 1112 3467889999999999998865543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.82 E-value=2.3e-08 Score=80.26 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCC--------CCCeEEEcCCCCCCCCCCceeEEEcccchhhhCH--
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMD--------SLPLVSRADPHNLPFFDEAFDVAFTAHLAEALFP-- 163 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~--------~~~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~-- 163 (229)
....+|+|||||+|..+..+++. +..+++..|..+ ..+.++.+|+.+. .+ .+|++++.++.|....
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~d~~ 155 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS-IP--NADAVLLKYILHNWTDKD 155 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTC-CC--CCSEEEEESCGGGSCHHH
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccC-CC--CCcEEEEEeecccCChHH
Confidence 45578999999999999999988 767999999753 2567999998763 22 5799999998887743
Q ss_pred -HHHHHHHHhccccC---cEEEEEee---c----------------------CCcccHHHHHHHHhcCceeEeeeeeecC
Q 027039 164 -SRFVGEMERTVKIG---GVCMVLME---E----------------------CAGREIKQIVELFRTSRFVDAANVTVNG 214 (229)
Q Consensus 164 -~~~l~~~~~~Lkpg---G~lil~~~---~----------------------~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 214 (229)
.++++++++.|+|| |+++++-. . ..+.+.++..+++++.+|..++-....|
T Consensus 156 ~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~~~~ 235 (244)
T d1fp2a2 156 CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTG 235 (244)
T ss_dssp HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEEECCC
Confidence 57899999999999 66665421 1 1233567888899988888777665555
Q ss_pred C
Q 027039 215 S 215 (229)
Q Consensus 215 ~ 215 (229)
.
T Consensus 236 ~ 236 (244)
T d1fp2a2 236 F 236 (244)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.81 E-value=4e-09 Score=87.41 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=76.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-----------------CCeEEEcCCCCC----CCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-----------------LPLVSRADPHNL----PFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-----------------~~~~~~~d~~~~----~~~~~~fD~V~ 153 (229)
..+.+|||+.||+|.++.+++..|. +|+++|.|+. .+.++++|+.+. ....++||+|+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 6788999999999999999998887 8999999976 245788887653 12357899999
Q ss_pred cc--cc-------hhhh--CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHH
Q 027039 154 TA--HL-------AEAL--FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELF 199 (229)
Q Consensus 154 ~~--~~-------~~~~--~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~ 199 (229)
+. .+ .+.. +...++..+.++|+|||.+++.+......+...+.+++
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~ 266 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELM 266 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHH
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHH
Confidence 86 11 1111 33567788889999999877777766555555555443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.81 E-value=2.7e-09 Score=82.79 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------CeEEEcCCCCCC-----CCCCceeEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------PLVSRADPHNLP-----FFDEAFDVA 152 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------~~~~~~d~~~~~-----~~~~~fD~V 152 (229)
..+++..++|++||+|..+..+.+. +.++|+|+|.++.+ +.++++++.++. +..++||.|
T Consensus 20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgI 99 (192)
T d1m6ya2 20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 99 (192)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCccee
Confidence 4578999999999999999999887 66799999999873 347788776642 446799999
Q ss_pred Eccc-c--------hhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCce
Q 027039 153 FTAH-L--------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRF 204 (229)
Q Consensus 153 ~~~~-~--------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~ 204 (229)
+..- + ...+ +..+.+..+.++|+|||+++++.-... +.+-+...|++...
T Consensus 100 l~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~--Edr~vk~~f~~~~~ 159 (192)
T d1m6ya2 100 LMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL--EDRIVKETFRNSKK 159 (192)
T ss_dssp EEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH--HHHHHHHHHHHCSS
T ss_pred eeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH--HHHHHHHHHhhccc
Confidence 8651 1 1222 457889999999999999886554322 23456677775443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=9.6e-08 Score=73.03 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=80.1
Q ss_pred ccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----CCeEEEcCCCCCC--------CCCCceeEEEcccc
Q 027039 92 SLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----LPLVSRADPHNLP--------FFDEAFDVAFTAHL 157 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----~~~~~~~d~~~~~--------~~~~~fD~V~~~~~ 157 (229)
..++++.+|||+||++|.+++.+.+. +.+.++++|+.+. ...++++|..+.. ...+.+|+|+|.-.
T Consensus 18 ~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a 97 (180)
T d1ej0a_ 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEeccc
Confidence 45689999999999999999998876 5579999999875 3458889887632 34578999999711
Q ss_pred ---------hhhhC---HHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeee
Q 027039 158 ---------AEALF---PSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVT 211 (229)
Q Consensus 158 ---------~~~~~---~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 211 (229)
.+... -...+.-+.++||+||.+++=+-. +....++...++ .-|.+++-++
T Consensus 98 p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~--g~~~~~l~~~l~-~~F~~V~~~K 160 (180)
T d1ej0a_ 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ--GEGFDEYLREIR-SLFTKVKVRK 160 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES--STTHHHHHHHHH-HHEEEEEEEC
T ss_pred chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec--CccHHHHHHHHH-hhcCEEEEEC
Confidence 11111 145567778899999997755533 334445554433 3344444443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=1.8e-08 Score=77.33 Aligned_cols=91 Identities=15% Similarity=0.062 Sum_probs=68.3
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC---------------CeEEEcCCCC-CCCCCCceeEEEcccchh
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL---------------PLVSRADPHN-LPFFDEAFDVAFTAHLAE 159 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~---------------~~~~~~d~~~-~~~~~~~fD~V~~~~~~~ 159 (229)
.+.+|||++||+|.++.+.+.+|...|+.+|.++.. ..++.+|+.. +...+.+||+|++.--..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 678999999999999999999998899999999872 3366777654 333567999999973222
Q ss_pred hhCHHHHHHHHHh--ccccCcEEEEEeec
Q 027039 160 ALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (229)
Q Consensus 160 ~~~~~~~l~~~~~--~LkpgG~lil~~~~ 186 (229)
.....+.+..+.+ .|+++|.+++..+.
T Consensus 123 ~~~~~~~l~~l~~~~~L~~~~iIiiE~~~ 151 (183)
T d2fpoa1 123 RGLLEETINLLEDNGWLADEALIYVESEV 151 (183)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred cchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 2234566666654 69999998876543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.75 E-value=1.6e-07 Score=73.16 Aligned_cols=111 Identities=19% Similarity=0.117 Sum_probs=76.5
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCCCCe------EEEcCCCCCCCCCCceeEEEcccchh-
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDSLPL------VSRADPHNLPFFDEAFDVAFTAHLAE- 159 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~~~~------~~~~d~~~~~~~~~~fD~V~~~~~~~- 159 (229)
.+....+++.+|||.|||+|.+...+.+. ....++|+|+++.... ++.+|..... ....||+|+++.-..
T Consensus 12 ~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~ii~npP~~~ 90 (223)
T d2ih2a1 12 VSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-PGEAFDLILGNPPYGI 90 (223)
T ss_dssp HHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-CSSCEEEEEECCCCCC
T ss_pred HHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc-cccccceecccCcccc
Confidence 33345578899999999999998888765 3457999999988543 5667766544 357899999981100
Q ss_pred ----------------------------hhC-HHHHHHHHHhccccCcEEEEEeecC--CcccHHHHHHHHh
Q 027039 160 ----------------------------ALF-PSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVELFR 200 (229)
Q Consensus 160 ----------------------------~~~-~~~~l~~~~~~LkpgG~lil~~~~~--~~~~~~~l~~l~~ 200 (229)
..+ ...++..+.+.|||||+++++++.. .....+.+.+.+-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~ 162 (223)
T d2ih2a1 91 VGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLA 162 (223)
T ss_dssp BSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHH
Confidence 001 1356788999999999999998763 2223345554433
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=3.3e-08 Score=77.01 Aligned_cols=57 Identities=19% Similarity=0.164 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC--------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS--------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~--------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.|.+|||+|||+|.++..++..|..+|+|+|+++. ..+++.+|+.++ +++||+|+++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~n 116 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMN 116 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEEC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEc
Confidence 67899999999999999988888779999999986 234777787665 4689999998
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=1.6e-08 Score=79.59 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCC-C-----CCCCceeE
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNL-P-----FFDEAFDV 151 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-----~~~~~fD~ 151 (229)
.+.+|||+|||+|..+..+++. ..++++++|.++. .++++.+|..+. + +..++||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 5679999999999999999976 3469999999976 356888887663 2 34578999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEE
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~li 181 (229)
|+..+-...-.....+.+..+.|||||.++
T Consensus 136 ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv 165 (214)
T d2cl5a1 136 VFLDHWKDRYLPDTLLLEKCGLLRKGTVLL 165 (214)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred eeecccccccccHHHHHHHhCccCCCcEEE
Confidence 998643222223445777889999999744
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.67 E-value=3.2e-08 Score=75.89 Aligned_cols=92 Identities=14% Similarity=0.042 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCC----CCCCCceeEEEc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNL----PFFDEAFDVAFT 154 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~----~~~~~~fD~V~~ 154 (229)
-.+.+|||++||+|.++.+.+.+|...|+++|.++. ...++++|+.+. .-...+||+|++
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 478999999999999999999999889999999976 234778887652 123568999999
Q ss_pred ccchhhhCHHHHHHHHHh--ccccCcEEEEEeec
Q 027039 155 AHLAEALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (229)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~--~LkpgG~lil~~~~ 186 (229)
.-=.......+.+..+.+ .|+|||.+++..+.
T Consensus 120 DPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~ 153 (182)
T d2fhpa1 120 DPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK 153 (182)
T ss_dssp CCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred chhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence 632222245667777654 69999997765543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.59 E-value=8e-08 Score=79.69 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=70.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC--------------------CeEEEcCCCC-CCCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL--------------------PLVSRADPHN-LPFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~--------------------~~~~~~d~~~-~~~~~~~fD~V 152 (229)
....+||.||.|.|..+..+.+. +..+|+++|+++.. ++++.+|+.+ +.-.+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 56789999999999999998877 66799999999873 2366677665 22235789999
Q ss_pred Ecccc--------hhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 153 FTAHL--------AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 153 ~~~~~--------~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.... ...+.-.++++.+.+.|+|||.+++.+..
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 97521 12234478999999999999998876654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=9.9e-08 Score=75.20 Aligned_cols=86 Identities=16% Similarity=0.064 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCC-C-----CCCCcee
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNL-P-----FFDEAFD 150 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~-----~~~~~fD 150 (229)
....+|||||||+|.-+..+++. ..++++++|.++. .++++.+|+.+. + ..+++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 57889999999999999999976 3579999999987 355788886552 1 2367899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
+|+..+-. ......++.+.+.|+|||.+++
T Consensus 138 ~ifiD~dk--~~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 138 VAVVDADK--ENCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp EEEECSCS--TTHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEeCCH--HHHHHHHHHHHHHhcCCcEEEE
Confidence 99986322 2356677888899999999764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=4.6e-08 Score=74.23 Aligned_cols=89 Identities=22% Similarity=0.159 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCe--------------EEEcCCCC----CCCCCCceeEEEccc
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPL--------------VSRADPHN----LPFFDEAFDVAFTAH 156 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~--------------~~~~d~~~----~~~~~~~fD~V~~~~ 156 (229)
..+.+|||+|||+|..+.+.+.+|. +++++|.++.+++ +...+... ......+||+|+++-
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 6889999999999999999888887 8999999988432 33333321 123457899999862
Q ss_pred chhhhCHHHHHHHH--HhccccCcEEEEEee
Q 027039 157 LAEALFPSRFVGEM--ERTVKIGGVCMVLME 185 (229)
Q Consensus 157 ~~~~~~~~~~l~~~--~~~LkpgG~lil~~~ 185 (229)
-.. .+..+.+.++ ...|+|||.+++...
T Consensus 119 PY~-~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 119 PYA-MDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CTT-SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred ccc-cCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 111 1122223333 357999999776544
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.52 E-value=1.4e-07 Score=77.52 Aligned_cols=92 Identities=22% Similarity=0.236 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------CeEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------~~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
....+||-||.|.|..+..+.+. +..+|+++|+++.. ++++.+|+.. +.-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 56789999999999999999887 66799999999872 3366677654 223457899999
Q ss_pred cccchh------hhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHLAE------ALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~~~------~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+..... .+.-.++++.+.+.|+|||.+++....
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 863322 224478999999999999998866554
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.49 E-value=6.6e-08 Score=77.51 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=55.8
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------CeEEEcCCCCCCCCCCceeEEEcc
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------PLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
.+...++++.+|||||||+|.++..|++.+. +|+++|+++.+ +.++++|+.+.++++..++.|++|
T Consensus 22 v~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~N 100 (245)
T d1yuba_ 22 IKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGN 100 (245)
T ss_dssp HHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEE
T ss_pred HHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEeee
Confidence 3334668899999999999999999999975 99999999884 338889999988888888888876
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.46 E-value=9.3e-07 Score=73.30 Aligned_cols=131 Identities=13% Similarity=0.176 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC------CCCeEEEecCCCCC--------------CeEEEcCCCCCCCCCCceeEEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI------GVADVTGVELMDSL--------------PLVSRADPHNLPFFDEAFDVAF 153 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~------g~~~v~~vD~s~~~--------------~~~~~~d~~~~~~~~~~fD~V~ 153 (229)
.+++.+|||.|||+|.+..++... ....++|+|+++.+ ..+.++|..... ...+||+|+
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~vi 193 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVI 193 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-ccccccccc
Confidence 356789999999999999887542 23479999998862 335566655433 357899999
Q ss_pred cccch------hh------------hC-HHHHHHHHHhccccCcEEEEEeecC--CcccHHHHHH-HHhcCceeEeeeee
Q 027039 154 TAHLA------EA------------LF-PSRFVGEMERTVKIGGVCMVLMEEC--AGREIKQIVE-LFRTSRFVDAANVT 211 (229)
Q Consensus 154 ~~~~~------~~------------~~-~~~~l~~~~~~LkpgG~lil~~~~~--~~~~~~~l~~-l~~~~~~~~~~~~~ 211 (229)
+|--. .. .+ ...+++.+.+.|+|||+++++++.. .......+.+ +.++..+..+.++.
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~lp 273 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLP 273 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEECC
Confidence 98110 00 00 2347899999999999999888863 2233444554 56677777776652
Q ss_pred e-----cCCeeEEEEEEec
Q 027039 212 V-----NGSNMTRILMRRT 225 (229)
Q Consensus 212 ~-----~~~~~~~~~~~~~ 225 (229)
. .+-..-++++++.
T Consensus 274 ~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 274 ETLFKSEQARKSILILEKA 292 (328)
T ss_dssp GGGSCC-CCCEEEEEEEEC
T ss_pred ccccCCCCCCeEEEEEECC
Confidence 2 2333344555554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.44 E-value=8.5e-08 Score=78.21 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCC-------------------------CeEEEcCCCCCCCCCCce
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSL-------------------------PLVSRADPHNLPFFDEAF 149 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~-------------------------~~~~~~d~~~~~~~~~~f 149 (229)
.++.+||.||+|.|..+..+...+..+|+.+|+++.. ++++.+|+...--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 6778999999999999999888766799999999762 236666665421235789
Q ss_pred eEEEcccch-----hhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 150 DVAFTAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 150 D~V~~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|+|+..... ..+.-.++++.+.+.|+|||.+++....
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 999986322 2223478999999999999998876644
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.39 E-value=1.6e-06 Score=68.74 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=63.6
Q ss_pred HHhcccCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCC----CCCCe----------EE-EcCCCCCCCCCCceeE
Q 027039 88 LQGKSLLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELM----DSLPL----------VS-RADPHNLPFFDEAFDV 151 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s----~~~~~----------~~-~~d~~~~~~~~~~fD~ 151 (229)
+.+..+++++.+|+|+|||.|.++..++++ +...+.|+++- +.++. +. ..|+.. .+++..|.
T Consensus 58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~ 135 (257)
T d2p41a1 58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDT 135 (257)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSE
T ss_pred HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCE
Confidence 344557799999999999999999999988 44477777763 11111 11 112223 34678999
Q ss_pred EEcccch-------hhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 152 AFTAHLA-------EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 152 V~~~~~~-------~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
|+|.-.. ++.-..++++-+.+.|+|||.|++=+-.
T Consensus 136 vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 136 LLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred EEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 9996211 1111245677778899999987654444
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=1.1e-06 Score=71.45 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------CeEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------~~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
.+..+||-||.|.|..+..+.+. +..+++.+|+++.. ++++.+|+.. +.-.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 56789999999999999999987 67799999999872 3367777655 223457899999
Q ss_pred cccc-----hhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHL-----AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~-----~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.... ..++.-.++++.+.+.|+|||.++.....
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 8622 22234588999999999999998866543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=3.8e-07 Score=74.54 Aligned_cols=92 Identities=25% Similarity=0.268 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC-------------------CCeEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS-------------------LPLVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
....+||-||.|.|..+..+.+. +..+++.+|+++. .++++.+|+.. +.-.+++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 56789999999999999999987 6779999999976 23466777654 222357899999
Q ss_pred cccch-----hhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.... .++.-.++++.+.+.|+|||.+++....
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 86322 2234468899999999999998877654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.33 E-value=1.3e-06 Score=71.45 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCC-------------------CeEEEcCCCC-C-CCCCCceeEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSL-------------------PLVSRADPHN-L-PFFDEAFDVA 152 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~-------------------~~~~~~d~~~-~-~~~~~~fD~V 152 (229)
....+||-||.|.|..+.++.+. +..+++.+|+++.. ++++.+|+.. + ...+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 56689999999999999999888 66799999999772 3366677554 2 2345789999
Q ss_pred Ecccc-----hhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 153 FTAHL-----AEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 153 ~~~~~-----~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
+.... ..++.-.++++.+++.|+|||.+++....
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 98622 23334588999999999999998877654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.33 E-value=3.8e-07 Score=72.52 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=56.9
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCCCCCcee
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~~~~~fD 150 (229)
++..+.+...++++.+|||||||+|.++..+++.+. +++++|+++. .+.++++|+.+.+++.....
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~ 87 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY 87 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccc
Confidence 344555556678999999999999999999999865 9999999876 35699999998887665555
Q ss_pred EEEcc
Q 027039 151 VAFTA 155 (229)
Q Consensus 151 ~V~~~ 155 (229)
.|++|
T Consensus 88 ~vv~N 92 (235)
T d1qama_ 88 KIFGN 92 (235)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 66665
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.29 E-value=6.2e-07 Score=73.99 Aligned_cols=92 Identities=22% Similarity=0.232 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCC-------------------eEEEcCCCC-CCCCCCceeEEE
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLP-------------------LVSRADPHN-LPFFDEAFDVAF 153 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~-------------------~~~~~d~~~-~~~~~~~fD~V~ 153 (229)
....+||-||.|.|..+.++.+. +..+|+.+|+++..+ +++.+|+.. +.-.+++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 56789999999999999999987 667999999998732 255555544 122357899999
Q ss_pred cccch-----hhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 154 TAHLA-----EALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 154 ~~~~~-----~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..... ..+.-.++++.+.+.|+|||.++.....
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 86322 2234578999999999999998866544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.24 E-value=6e-07 Score=70.96 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC----------------CCeEEEcCCCCC-C------CCCCce
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS----------------LPLVSRADPHNL-P------FFDEAF 149 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~----------------~~~~~~~d~~~~-~------~~~~~f 149 (229)
....+|||||++.|.-+..+++. ..++++.+|.++. .+.++.+++.+. + ..+++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 46889999999999999999865 3579999999987 355778887652 2 135689
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil 182 (229)
|+|+..+ ++......++.+.+.|+|||.+++
T Consensus 138 D~iFiDa--~k~~y~~~~e~~~~ll~~gGiii~ 168 (227)
T d1susa1 138 DFIFVDA--DKDNYLNYHKRLIDLVKVGGVIGY 168 (227)
T ss_dssp SEEEECS--CSTTHHHHHHHHHHHBCTTCCEEE
T ss_pred eEEEecc--chhhhHHHHHHHHhhcCCCcEEEE
Confidence 9999853 223456778888899999999664
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.22 E-value=2e-06 Score=65.49 Aligned_cols=91 Identities=21% Similarity=0.131 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC-----------------eEEEcCCCC---CCCCCCceeEEEcc
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------------LVSRADPHN---LPFFDEAFDVAFTA 155 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~-----------------~~~~~d~~~---~~~~~~~fD~V~~~ 155 (229)
.+.+|||+-||+|.++.+...+|...|+.+|.+...+ .+...|..+ ......+||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 6789999999999999999999999999999997621 133333322 22335679999996
Q ss_pred cchhhhCHHHHHHHHHh--ccccCcEEEEEeec
Q 027039 156 HLAEALFPSRFVGEMER--TVKIGGVCMVLMEE 186 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~--~LkpgG~lil~~~~ 186 (229)
-=.......+.+..+.. .|+++|.+++..+.
T Consensus 123 PPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 123 PPFHFNLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred hhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 21111123556666654 79999998877665
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.07 E-value=4.3e-06 Score=69.02 Aligned_cols=111 Identities=10% Similarity=0.011 Sum_probs=74.7
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCCCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLPFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~~~~fD~V~~~ 155 (229)
..++|.+|||++||+|.-+..+++. +.+.+++.|.++. .+.....|....+..+..||.|+..
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD 192 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 192 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEc
Confidence 3478999999999999999888876 4568999999976 2234555666666557899999985
Q ss_pred c-------------chhhhC----------HHHHHHHHHhccccCcEEEEEeecCCcccHHH-HHHHHhcCc
Q 027039 156 H-------------LAEALF----------PSRFVGEMERTVKIGGVCMVLMEECAGREIKQ-IVELFRTSR 203 (229)
Q Consensus 156 ~-------------~~~~~~----------~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~-l~~l~~~~~ 203 (229)
. ..+... ..+++..+.+.|||||.++-.|-.-...+.+. +..+.++..
T Consensus 193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~ 264 (313)
T d1ixka_ 193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD 264 (313)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCC
Confidence 0 001001 14678899999999999775654433333333 334444443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.05 E-value=4.9e-06 Score=63.32 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=78.3
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC-----------eEEEcCCCCCC-----CCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP-----------LVSRADPHNLP-----FFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~-----------~~~~~d~~~~~-----~~~~~fD~V~~~~ 156 (229)
..+++..++|..+|.|..+..+.+.+ ++|+|+|.++.++ .+++++..++. ...+.+|.|+..-
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL 93 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADL 93 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence 45899999999999999999998884 5999999998743 46677665532 3346899999851
Q ss_pred -c--------hhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCcee
Q 027039 157 -L--------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFV 205 (229)
Q Consensus 157 -~--------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~ 205 (229)
+ ...+ .....+......|+|||.+++..-.. .+.+.+...|+...+.
T Consensus 94 GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs--~Ed~ivk~~~~e~~~k 150 (182)
T d1wg8a2 94 GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS--LEDRVVKRFLRESGLK 150 (182)
T ss_dssp SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH--HHHHHHHHHHHHHCSE
T ss_pred cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc--chhHHHHHHHhhccce
Confidence 1 1112 23557888899999999988666542 2334566777755443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.00 E-value=2.3e-05 Score=61.73 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEEcCCCChhhHHHHh----C-CCCeEEEecCCCC----------CCeEEEcCCCCCC-
Q 027039 80 SYAHFFKHLQGKSLLFNHSKVLCVSAGAGHEVMAFNS----I-GVADVTGVELMDS----------LPLVSRADPHNLP- 143 (229)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~-g~~~v~~vD~s~~----------~~~~~~~d~~~~~- 143 (229)
.+..++..+ .+.+|||||++.|.-+..+++ . ..++++++|+.+. .+.++++|..+..
T Consensus 71 ~~~eli~~~-------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~ 143 (232)
T d2bm8a1 71 VYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTT 143 (232)
T ss_dssp HHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGG
T ss_pred HHHHHHHHh-------CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHH
Confidence 445555555 477999999999987665543 2 3569999999765 3458889876643
Q ss_pred ---CCCCceeEEEcccchhhhCH-HHHHHHHHhccccCcEEEE
Q 027039 144 ---FFDEAFDVAFTAHLAEALFP-SRFVGEMERTVKIGGVCMV 182 (229)
Q Consensus 144 ---~~~~~fD~V~~~~~~~~~~~-~~~l~~~~~~LkpgG~lil 182 (229)
+.+..+|+|+...- |+... ..-+ +..+.|+|||.+++
T Consensus 144 ~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIv 184 (232)
T d2bm8a1 144 FEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFII 184 (232)
T ss_dssp GGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEE
T ss_pred HHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEE
Confidence 33557888886422 11111 1112 35689999999663
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=2.6e-05 Score=63.30 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=65.1
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCCCCe--------------EEE-cCCCCC-CCCCCceeEEEcc
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDSLPL--------------VSR-ADPHNL-PFFDEAFDVAFTA 155 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~~~~--------------~~~-~d~~~~-~~~~~~fD~V~~~ 155 (229)
..+++.+|||+++|+|.-+..+++. ..+.++++|+++..+. .+. .|.... ....+.||.|+..
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence 3478999999999999999999887 4468999999988321 222 222211 1235689999986
Q ss_pred -------------cchhhhC----------HHHHHHHHHhccccCcEEEEEeec
Q 027039 156 -------------HLAEALF----------PSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 156 -------------~~~~~~~----------~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+.+... ..+++..+.+.|||||+++-.|-.
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 1111111 256788999999999997755544
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.86 E-value=5.7e-05 Score=64.55 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=85.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC----C----------CCeEEEecCCCCC-----------------CeEEEcCCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI----G----------VADVTGVELMDSL-----------------PLVSRADPHNL 142 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~----g----------~~~v~~vD~s~~~-----------------~~~~~~d~~~~ 142 (229)
.+++.+|+|-+||+|.+.....+. . ...+.|+|+++.. .....+|....
T Consensus 160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~ 239 (425)
T d2okca1 160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 239 (425)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh
Confidence 366889999999999998877553 1 1258999998752 23555555543
Q ss_pred CCCCCceeEEEccc---chhh--------------hC-HHHHHHHHHhccccCcEEEEEeecC---CcccHHHHH-HHHh
Q 027039 143 PFFDEAFDVAFTAH---LAEA--------------LF-PSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQIV-ELFR 200 (229)
Q Consensus 143 ~~~~~~fD~V~~~~---~~~~--------------~~-~~~~l~~~~~~LkpgG~lil~~~~~---~~~~~~~l~-~l~~ 200 (229)
+ ....||+|++|- .... .+ -..+++.+.+.||+||++.++++.. .......+. .+++
T Consensus 240 ~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~ 318 (425)
T d2okca1 240 E-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQ 318 (425)
T ss_dssp C-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHH
T ss_pred h-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHH
Confidence 3 357899999981 1000 00 1458899999999999999998862 222334444 4566
Q ss_pred cCceeEeeeeee-----cCCeeEEEEEEecc
Q 027039 201 TSRFVDAANVTV-----NGSNMTRILMRRTR 226 (229)
Q Consensus 201 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 226 (229)
+..+..+..+.. .+-..-++++++++
T Consensus 319 ~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k 349 (425)
T d2okca1 319 DFNLHTILRLPTGIFYAQGVKANVLFFSKGQ 349 (425)
T ss_dssp HEEEEEEEECCSSSSSSTTCCEEEEEEEESS
T ss_pred hcchhHhhcCCcccccCCCCCeEEEEEECCC
Confidence 777777766532 23333455555544
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=3.7e-05 Score=64.06 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=73.2
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------------CCeEEEcCCCCC----CCCCCceeEEE
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------------LPLVSRADPHNL----PFFDEAFDVAF 153 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------------~~~~~~~d~~~~----~~~~~~fD~V~ 153 (229)
...++.+|||+-||.|.++..|++.. .+|+|+|.++. ...++.++..+. +.....+|+|+
T Consensus 209 ~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 209 DVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp TCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred ccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 45678899999999999999999885 49999999977 345888887762 23356799999
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccH-HHHHHHHh-cCceeEeeeeee
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREI-KQIVELFR-TSRFVDAANVTV 212 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~-~~l~~l~~-~~~~~~~~~~~~ 212 (229)
..---... .+.++.+.+. +|.-. +.+++ +..++ +.+..+.+ ..++.++.-++.
T Consensus 288 lDPPR~G~--~~~~~~l~~~-~~~~i--vYVSC-np~TlaRDl~~l~~~gy~l~~i~~~D~ 342 (358)
T d1uwva2 288 LDPARAGA--AGVMQQIIKL-EPIRI--VYVSC-NPATLARDSEALLKAGYTIARLAMLDM 342 (358)
T ss_dssp ECCCTTCC--HHHHHHHHHH-CCSEE--EEEES-CHHHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred eCCCCccH--HHHHHHHHHc-CCCEE--EEEeC-CHHHHHHHHHHHHHCCCeEeEEEEEec
Confidence 86111111 2345555543 56544 34444 23332 34555544 466777666655
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.0001 Score=59.85 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhC--CCCeEEEecCCCC---------------CCeEEEcCCCCCCCC---CCceeEEE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSI--GVADVTGVELMDS---------------LPLVSRADPHNLPFF---DEAFDVAF 153 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~--g~~~v~~vD~s~~---------------~~~~~~~d~~~~~~~---~~~fD~V~ 153 (229)
.+++.+|||++||+|.-+..+++. +.+.++++|+++. .+.+...|...++.. .+.||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 478999999999999999998876 5569999999876 344666777665422 25799999
Q ss_pred cc
Q 027039 154 TA 155 (229)
Q Consensus 154 ~~ 155 (229)
..
T Consensus 172 ~D 173 (293)
T d2b9ea1 172 LD 173 (293)
T ss_dssp EC
T ss_pred ec
Confidence 86
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=4.7e-05 Score=61.48 Aligned_cols=66 Identities=21% Similarity=0.159 Sum_probs=52.1
Q ss_pred HHHhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC----------------CCeEEEcCCCCCCCCCCcee
Q 027039 87 HLQGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS----------------LPLVSRADPHNLPFFDEAFD 150 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~----------------~~~~~~~d~~~~~~~~~~fD 150 (229)
.+.+...+.++..|||||+|.|.++..|++.+. +++++|+++. .++++.+|+....++ .++
T Consensus 12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~~~ 88 (278)
T d1zq9a1 12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFD 88 (278)
T ss_dssp HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCS
T ss_pred HHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--hhh
Confidence 334444567899999999999999999999875 9999999865 345889999887654 356
Q ss_pred EEEcc
Q 027039 151 VAFTA 155 (229)
Q Consensus 151 ~V~~~ 155 (229)
.|++|
T Consensus 89 ~vV~N 93 (278)
T d1zq9a1 89 TCVAN 93 (278)
T ss_dssp EEEEE
T ss_pred hhhcc
Confidence 77776
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00014 Score=63.69 Aligned_cols=134 Identities=12% Similarity=0.107 Sum_probs=82.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC----C---------------CCeEEEecCCCCCCe--------------------
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI----G---------------VADVTGVELMDSLPL-------------------- 133 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~----g---------------~~~v~~vD~s~~~~~-------------------- 133 (229)
..+++.+|+|-+||+|.+.....+. . ...++|+|+++....
T Consensus 161 ~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~ 240 (524)
T d2ar0a1 161 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 240 (524)
T ss_dssp CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccch
Confidence 3467889999999999998775432 1 125899999875211
Q ss_pred EEEcCCCCCC-CCCCceeEEEccc-c-h------------hhhC-HHHHHHHHHhccccCcEEEEEeecC---CcccHHH
Q 027039 134 VSRADPHNLP-FFDEAFDVAFTAH-L-A------------EALF-PSRFVGEMERTVKIGGVCMVLMEEC---AGREIKQ 194 (229)
Q Consensus 134 ~~~~d~~~~~-~~~~~fD~V~~~~-~-~------------~~~~-~~~~l~~~~~~LkpgG~lil~~~~~---~~~~~~~ 194 (229)
+..++....+ ....+||+|++|- + . ...+ ...+++.+.+.|||||++.++++.. .......
T Consensus 241 ~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~ 320 (524)
T d2ar0a1 241 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD 320 (524)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHH
T ss_pred hhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHH
Confidence 2222222111 2346899999981 1 0 0011 2458899999999999999999863 2222234
Q ss_pred HH-HHHhcCceeEeeeeee-----cCCeeEEEEEEecc
Q 027039 195 IV-ELFRTSRFVDAANVTV-----NGSNMTRILMRRTR 226 (229)
Q Consensus 195 l~-~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 226 (229)
+. .++.+..+..+..+.. .|-..-+++++|+|
T Consensus 321 iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k 358 (524)
T d2ar0a1 321 IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 358 (524)
T ss_dssp HHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBC
T ss_pred HHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECCC
Confidence 44 4667777777776632 24444555556654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=4.5e-05 Score=60.77 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=44.3
Q ss_pred HhcccCCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC-------------CCeEEEcCCCCCCC
Q 027039 89 QGKSLLFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS-------------LPLVSRADPHNLPF 144 (229)
Q Consensus 89 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~-------------~~~~~~~d~~~~~~ 144 (229)
.+.....++..|||||||.|.++..|++.+. +++++|+++. .+.++.+|+...++
T Consensus 14 v~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 14 VSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 3333567899999999999999999999865 9999999976 24578888877653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.98 E-value=0.0015 Score=48.43 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=71.5
Q ss_pred HHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC---------CeEEEcCCCCC-----CCCCCce
Q 027039 86 KHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL---------PLVSRADPHNL-----PFFDEAF 149 (229)
Q Consensus 86 ~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~---------~~~~~~d~~~~-----~~~~~~f 149 (229)
..+.....++++.+||-+|||. |..+..+++. |...++++|.++.. ..++..+-.+. .+.++.|
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCC
Confidence 3344455679999999999986 5566666665 88788999988762 23443332221 1235679
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEEee-cCC-cccHHHHHHHHhcCceeEe
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME-ECA-GREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~-~~~-~~~~~~l~~l~~~~~~~~~ 207 (229)
|+|+-..- ....++...+.++|+|+++++-. ..+ ..++....-++++..+..+
T Consensus 98 D~vid~~G-----~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs 152 (174)
T d1f8fa2 98 NFALESTG-----SPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGV 152 (174)
T ss_dssp EEEEECSC-----CHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEEC
T ss_pred cEEEEcCC-----cHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEE
Confidence 99885311 23567788999999999885422 211 1223222234556666554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.95 E-value=0.00018 Score=60.44 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCCChhhHHHHh-CCCCeEEEecCCCCCCe------------------------------EEEcCCCCCC-
Q 027039 96 NHSKVLCVSAGAGHEVMAFNS-IGVADVTGVELMDSLPL------------------------------VSRADPHNLP- 143 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~-~g~~~v~~vD~s~~~~~------------------------------~~~~d~~~~~- 143 (229)
.+.+|||..||+|..++..+. .|...|++.|+|+..++ +.+.|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 678999999999999997665 47779999999987322 2223322211
Q ss_pred CCCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 144 FFDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 144 ~~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
-....||+|...-+.. |..++..+.+.++.||.+.+..
T Consensus 125 ~~~~~fDvIDiDPfGs---~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDPFGS---PMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECCSSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCCCCC---cHHHHHHHHHHhccCCEEEEEe
Confidence 1245799998865443 7889999999999999988554
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.87 E-value=0.00097 Score=50.57 Aligned_cols=94 Identities=18% Similarity=0.116 Sum_probs=62.6
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe-------EEEcCCCCCCC--------CCCceeEE
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL-------VSRADPHNLPF--------FDEAFDVA 152 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~-------~~~~d~~~~~~--------~~~~fD~V 152 (229)
....++++.+||.+|||. |..+..++.. |..+|+++|.++...+ -..-+..+.++ ....+|++
T Consensus 19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~v 98 (195)
T d1kola2 19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCA 98 (195)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEE
Confidence 345679999999999998 6677777765 8779999999986322 11112222111 23468988
Q ss_pred Eccc-------chhhh---CHHHHHHHHHhccccCcEEEEE
Q 027039 153 FTAH-------LAEAL---FPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 153 ~~~~-------~~~~~---~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+-.. ..+.. ...+.++.+.+.++|||+++++
T Consensus 99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 8431 11111 2467899999999999998854
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.68 E-value=0.00083 Score=49.97 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=60.7
Q ss_pred hcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC------CCCCceeEE
Q 027039 90 GKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP------FFDEAFDVA 152 (229)
Q Consensus 90 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~------~~~~~fD~V 152 (229)
....++++.+||-+|||. |..+..+++. |..+|+++|.+++..+ ++...-.++. .....+|+|
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~v 100 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRV 100 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceE
Confidence 345679999999999997 8888888887 8778999999876222 2222211110 122459998
Q ss_pred EcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 153 FTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
+-..- -...+++..+.+||+|+++++
T Consensus 101 id~~g-----~~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 101 IMAGG-----GSETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EECSS-----CTTHHHHHHHHEEEEEEEEEC
T ss_pred EEccC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 86321 124567788999999998854
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.65 E-value=0.0018 Score=48.18 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=61.2
Q ss_pred HHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC---------C
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP---------F 144 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~---------~ 144 (229)
+..+.....+++|.+||-+|+|. |..+..+++. |..+|+++|.+++..+ ++...-.+.. .
T Consensus 17 ~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 17 YHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp HHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhh
Confidence 33344445678999999999985 7777777776 8778999999887322 2211111110 1
Q ss_pred CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
....+|+|+-..- -...++...+.++|||+++++
T Consensus 97 ~~~g~Dvvid~vG-----~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 97 HGRGADFILEATG-----DSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp TTSCEEEEEECSS-----CTTHHHHHHHHEEEEEEEEEC
T ss_pred CCCCceEEeecCC-----chhHHHHHHHHhcCCCEEEEE
Confidence 1345899885321 123567888999999998744
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.0013 Score=48.50 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=69.3
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC--------CCCCceeE
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP--------FFDEAFDV 151 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~--------~~~~~fD~ 151 (229)
+..++++.+||=+|+|+ |..+..++.. |..+|+++|.++...+ ++..+-.+.. -....+|+
T Consensus 21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv 100 (171)
T d1pl8a2 21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 100 (171)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceE
Confidence 34678999999999987 6666666665 8778999999877332 2222212110 01246788
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEee
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAA 208 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~ 208 (229)
|+-..- -...++...+.+++||++++.-......++....-.+++..+..+.
T Consensus 101 vid~~G-----~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~ 152 (171)
T d1pl8a2 101 TIECTG-----AEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVF 152 (171)
T ss_dssp EEECSC-----CHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECC
T ss_pred EEeccC-----CchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEe
Confidence 875321 2446788899999999988554333333333322235555555543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.60 E-value=0.0019 Score=47.37 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=58.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC----------CCCCce
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP----------FFDEAF 149 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~----------~~~~~f 149 (229)
...++++.+||-+|||. |..+..++.. |. +|+++|.++...+ .+..+..... ...+.+
T Consensus 21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred HhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCC
Confidence 34578999999999985 7777777766 86 9999999876322 2222221111 012457
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEEe
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLM 184 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~ 184 (229)
|+|+-..- ....+..+.+.++|+|++++.-
T Consensus 100 D~vid~~g-----~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 100 NVTIDCSG-----NEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SEEEECSC-----CHHHHHHHHHHSCTTCEEEECS
T ss_pred ceeeecCC-----ChHHHHHHHHHHhcCCceEEEe
Confidence 88875321 2356788889999999988543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.56 E-value=0.0038 Score=46.24 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=64.7
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC-------CC
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP-------FF 145 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~-------~~ 145 (229)
.+........++++.+||=+|||. |..+..+++. |...|+++|.++...+ ++.....+.. ..
T Consensus 16 ~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 16 GYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELT 95 (174)
T ss_dssp HHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhh
Confidence 333444456679999999999998 8888888877 8879999999987322 3221111111 12
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccC-cEEEEEe
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIG-GVCMVLM 184 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lil~~ 184 (229)
.+.+|+|+-.. --...+.+..+.++|| |+++++-
T Consensus 96 ~~G~d~vie~~-----G~~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 96 AGGVDYSLDCA-----GTAQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp TSCBSEEEESS-----CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred cCCCcEEEEec-----ccchHHHHHHHHhhcCCeEEEecC
Confidence 35678887521 1245688899999996 9987543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.0031 Score=46.44 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=68.0
Q ss_pred HHHhcccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcCCCCCC--------CCC
Q 027039 87 HLQGKSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSLP---------LVSRADPHNLP--------FFD 146 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d~~~~~--------~~~ 146 (229)
.+.....++++.+||-.|+ | .|..+..+++. |. ++++++.+++.. .++ |..+.. ...
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi--~~~~~~~~~~i~~~t~~ 95 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVF--NHREVNYIDKIKKYVGE 95 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEE--ETTSTTHHHHHHHHHCT
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCccccc--ccccccHHHHhhhhhcc
Confidence 3445556789999999996 3 36777777776 87 888888776521 122 222211 134
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
..+|+|+... ....+++..+.++|+|+++.+ ...+..+.....-++++..+..+
T Consensus 96 ~g~d~v~d~~------g~~~~~~~~~~l~~~G~iv~~-G~~~~~~~~~~~~~~k~~~i~g~ 149 (174)
T d1yb5a2 96 KGIDIIIEML------ANVNLSKDLSLLSHGGRVIVV-GSRGTIEINPRDTMAKESSIIGV 149 (174)
T ss_dssp TCEEEEEESC------HHHHHHHHHHHEEEEEEEEEC-CCCSCEEECTHHHHTTTCEEEEC
T ss_pred CCceEEeecc------cHHHHHHHHhccCCCCEEEEE-ecCCCCCCCHHHHHHCCCEEEEE
Confidence 5799998743 124577888999999998854 33333333332334445555443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.37 E-value=0.00031 Score=51.94 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=56.8
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEc-CCCCC-CCCCCceeEEEcccch
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRA-DPHNL-PFFDEAFDVAFTAHLA 158 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~-d~~~~-~~~~~~fD~V~~~~~~ 158 (229)
..++++.+||-+|+|. |..+..+++. |. +|+++|.+++..+ ++.. +..+. .-..+.||+|+...-.
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 4568999999999984 7777777766 87 8999999987432 3322 11111 1124579988863111
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEE
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.. ...+....+.++|+|+++++
T Consensus 102 ~~---~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 102 LT---DIDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp ST---TCCTTTGGGGEEEEEEEEEC
T ss_pred Cc---cchHHHHHHHhhccceEEEe
Confidence 11 01134578899999998854
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.13 E-value=0.005 Score=45.20 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=66.9
Q ss_pred cCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC---------CeEEEcCCCCCC-----CCCCceeEEEccc
Q 027039 93 LLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL---------PLVSRADPHNLP-----FFDEAFDVAFTAH 156 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~---------~~~~~~d~~~~~-----~~~~~fD~V~~~~ 156 (229)
.++++.+||-+|+|. |..+..++.. |...++++|.++.. ..++..+-.... .....+|+|+-..
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 458999999999987 5666666665 77799999998762 223332211110 1234588888632
Q ss_pred chhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 157 LAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 157 ~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
- -...++...+.+++||+++++ ......++....-.++...+..+
T Consensus 109 g-----~~~~~~~a~~~l~~~G~iv~~-G~~~~~~~~~~~l~~k~~~i~Gs 153 (172)
T d1h2ba2 109 G-----SQATVDYTPYLLGRMGRLIIV-GYGGELRFPTIRVISSEVSFEGS 153 (172)
T ss_dssp C-----CHHHHHHGGGGEEEEEEEEEC-CCSSCCCCCHHHHHHTTCEEEEC
T ss_pred C-----cchHHHHHHHHHhCCCEEEEE-eCcccccCCHHHHHhCCcEEEEE
Confidence 1 234578889999999998844 44333333333334455555544
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.08 E-value=0.0051 Score=44.62 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=64.9
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe--------EEEcCCCCCC------CCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL--------VSRADPHNLP------FFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~--------~~~~d~~~~~------~~~~~fD~V~~~ 155 (229)
..++++.+||-.|+|+ |..+..++.. |. +|+++|.++...+ .+.....+.. ..++.+|+|++.
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 101 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA 101 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec
Confidence 3568999999999987 5566666666 66 8999998877322 2211111110 123445555542
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEe
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDA 207 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~ 207 (229)
. -...+....+.++|||+++++-...+..+.....-++++..+..+
T Consensus 102 ~------~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs 147 (168)
T d1rjwa2 102 V------SKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGS 147 (168)
T ss_dssp C------CHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEEC
T ss_pred C------CHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEEE
Confidence 1 235678899999999998865433333333333334555555544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.07 E-value=0.0026 Score=46.36 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=55.0
Q ss_pred ccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC-----CCCCceeEEEcc
Q 027039 92 SLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP-----FFDEAFDVAFTA 155 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~-----~~~~~fD~V~~~ 155 (229)
..++++.+||=+|+|. |..+..+++. |. +|+++|.++...+ ++..+-.+.. ...+.+|.|++.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc
Confidence 3568999999999986 6777777766 85 9999999876322 3322222210 112334555542
Q ss_pred cchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 156 HLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
.. ...++...+.|+|||+++++
T Consensus 102 ~~------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 102 VS------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SC------HHHHHHHHTTEEEEEEEEEC
T ss_pred cc------chHHHHHHHHhcCCcEEEEE
Confidence 21 24577888999999998854
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.88 E-value=0.023 Score=41.61 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=58.6
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC-------C
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP-------F 144 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~-------~ 144 (229)
+.+..+.....++++.+||=+|||. |..+..+++. |..+|+++|.+++..+ ++...-.+.. .
T Consensus 14 Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~ 93 (174)
T d1p0fa2 14 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEK 93 (174)
T ss_dssp HHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHh
Confidence 3444445556789999999999987 5666666665 8889999999987433 3321111111 1
Q ss_pred CCCceeEEEcccchhhhCHHHHHHHHHhcc-ccCcEEEEE
Q 027039 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTV-KIGGVCMVL 183 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~~~~~~l~~~~~~L-kpgG~lil~ 183 (229)
.++.+|.|+-.. -....+.+....+ +++|+++++
T Consensus 94 ~~~G~d~vid~~-----g~~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 94 TNGGVDYAVECA-----GRIETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp TTSCBSEEEECS-----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred cCCCCcEEEEcC-----CCchHHHHHHHHHHHhcCceEEE
Confidence 234578777521 1234455556555 456887744
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.43 E-value=0.01 Score=43.25 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=57.0
Q ss_pred ccCCCCCeEEEEcCC--CChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcCCCCCC------CCCCceeEEE
Q 027039 92 SLLFNHSKVLCVSAG--AGHEVMAFNSI-GVADVTGVELMDSLP---------LVSRADPHNLP------FFDEAFDVAF 153 (229)
Q Consensus 92 ~~~~~~~~vLDiG~G--~G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d~~~~~------~~~~~fD~V~ 153 (229)
..++++.+||=+|++ .|..+..++.. |...|+++|.+++.. .++..+-.+.. ...+.||+|+
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vi 102 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVI 102 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhh
Confidence 457899999999974 35556655555 777999999987622 23332222210 1235699988
Q ss_pred cccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 154 TAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
...- ....++...+.++|||+++++
T Consensus 103 d~~g-----~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 103 DLNN-----SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp ESCC-----CHHHHTTGGGGEEEEEEEEEC
T ss_pred cccc-----cchHHHhhhhhcccCCEEEEe
Confidence 6421 234567788999999998755
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.08 E-value=0.041 Score=40.32 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL 131 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~ 131 (229)
+..+.....++++.+|+=+|||. |..+..++.. |..+|+++|.+++.
T Consensus 18 ~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k 66 (176)
T d1d1ta2 18 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK 66 (176)
T ss_dssp HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence 33344455679999999999986 5666666665 87799999999884
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.00 E-value=0.067 Score=38.63 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=62.0
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCCC-------CC
Q 027039 84 FFKHLQGKSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNLP-------FF 145 (229)
Q Consensus 84 ~~~~l~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~~-------~~ 145 (229)
.+..+.....++++.+||=.|||. |..+..++.. |...|+++|.++...+ ++..+-.+.. ..
T Consensus 16 ay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~ 95 (176)
T d2fzwa2 16 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMT 95 (176)
T ss_dssp HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHT
T ss_pred HHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHc
Confidence 333444556789999999999984 4556666665 8879999999887332 3222111111 12
Q ss_pred CCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEee
Q 027039 146 DEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 146 ~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
.+.+|+|+-..- ...+++.+...+++||.++++..
T Consensus 96 ~~g~D~vid~~G-----~~~~~~~~~~~~~~g~~~~~v~~ 130 (176)
T d2fzwa2 96 DGGVDYSFECIG-----NVKVMRAALEACHKGWGVSVVVG 130 (176)
T ss_dssp TSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCcEeeecCC-----CHHHHHHHHHhhcCCceeEEEEe
Confidence 356898886321 23567788889999988765543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.96 E-value=0.0044 Score=48.69 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=47.9
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC------------------------CCeEEEcCCCC-CCCCCCceeEE
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS------------------------LPLVSRADPHN-LPFFDEAFDVA 152 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~------------------------~~~~~~~d~~~-~~~~~~~fD~V 152 (229)
.+|||.-||.|..+..++..|+ +|+++|-++. .++++.+|..+ +.-...+||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 4899999999999999999987 9999999875 24588888655 33235679999
Q ss_pred Ecccch
Q 027039 153 FTAHLA 158 (229)
Q Consensus 153 ~~~~~~ 158 (229)
+..-+.
T Consensus 169 YlDPMF 174 (250)
T d2oyra1 169 YLDPMF 174 (250)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 987444
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.83 E-value=0.011 Score=48.02 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=37.8
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-CCCeEEEecCCCC------------CCeEEEcCCCC
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-GVADVTGVELMDS------------LPLVSRADPHN 141 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-g~~~v~~vD~s~~------------~~~~~~~d~~~ 141 (229)
.+..|||||+|.|.++..|.+. ...+++++|+++. .+.++++|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 5778999999999999999887 3458999999855 46688888764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.27 E-value=0.0085 Score=43.69 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=56.2
Q ss_pred cccCCCCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcCCCCC-CCCCCceeEEEcccch
Q 027039 91 KSLLFNHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRADPHNL-PFFDEAFDVAFTAHLA 158 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d~~~~-~~~~~~fD~V~~~~~~ 158 (229)
...++++.+||=+|+|. |..+..+++. |. +++++|.+++..+ ++...-.+. ....+.+|.++-..-
T Consensus 25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g- 102 (168)
T d1uufa2 25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA- 102 (168)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-
T ss_pred HhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-
Confidence 34679999999999986 7777777776 87 6778888776332 222111111 112357998885321
Q ss_pred hhhCHHHHHHHHHhccccCcEEEEE
Q 027039 159 EALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 159 ~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
-...+....+.++|+|+++++
T Consensus 103 ----~~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 103 ----APHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ----SCCCHHHHHTTEEEEEEEEEC
T ss_pred ----cchhHHHHHHHHhcCCEEEEe
Confidence 112356677899999998855
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.059 Score=39.12 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=61.9
Q ss_pred HHHHhcccCCCCCeEEEEcCCC--ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcCCCCCC------CCCC
Q 027039 86 KHLQGKSLLFNHSKVLCVSAGA--GHEVMAFNSI-GVADVTGVELMDSLP---------LVSRADPHNLP------FFDE 147 (229)
Q Consensus 86 ~~l~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d~~~~~------~~~~ 147 (229)
..+.....++++.+||=.|+|. |..+..+++. |. +|++++.+++.. .++..+-.++. -...
T Consensus 18 ~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 18 YLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGK 96 (179)
T ss_dssp HHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTC
T ss_pred HHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCC
Confidence 3344455679999999997775 6788888887 86 999999998722 23322222211 1246
Q ss_pred ceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 148 AFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 148 ~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.+|+|+...-. +.+....+.++|+|++++....
T Consensus 97 g~d~v~d~~g~------~~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 97 KVRVVYDSVGR------DTWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp CEEEEEECSCG------GGHHHHHHTEEEEEEEEECCCT
T ss_pred CeEEEEeCccH------HHHHHHHHHHhcCCeeeecccc
Confidence 78988864322 2456788899999997754433
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.21 E-value=0.023 Score=41.92 Aligned_cols=114 Identities=14% Similarity=0.122 Sum_probs=69.8
Q ss_pred HHHhcccCCCCCeEEEEcCCC--ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcC--CCC--CCCCCCcee
Q 027039 87 HLQGKSLLFNHSKVLCVSAGA--GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRAD--PHN--LPFFDEAFD 150 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d--~~~--~~~~~~~fD 150 (229)
.+......+++.+||=-|++. |..+..+++. |. +|+++.-+++..+ ++.-+ ..+ ....++.+|
T Consensus 22 ~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 22 RLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWA 100 (176)
T ss_dssp HHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEE
T ss_pred HHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcC
Confidence 344556677899999999765 5777888876 77 8888877766221 22111 011 112356899
Q ss_pred EEEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHH-HHhcCceeEe
Q 027039 151 VAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVE-LFRTSRFVDA 207 (229)
Q Consensus 151 ~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~-l~~~~~~~~~ 207 (229)
+|+-+-- ...+.+..+.|+|||+++.+-...+.....++.. ++++..+..+
T Consensus 101 ~vid~vg------g~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv 152 (176)
T d1xa0a2 101 AAVDPVG------GRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI 152 (176)
T ss_dssp EEEECST------TTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred EEEEcCC------chhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence 9886422 2247788999999999886655444433333333 3556565554
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.09 E-value=0.15 Score=41.65 Aligned_cols=91 Identities=9% Similarity=-0.036 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCCChhhHHHHhC-----------------CCCeEEEecCCCC-------------------CCeEEEcCC
Q 027039 96 NHSKVLCVSAGAGHEVMAFNSI-----------------GVADVTGVELMDS-------------------LPLVSRADP 139 (229)
Q Consensus 96 ~~~~vLDiG~G~G~~~~~l~~~-----------------g~~~v~~vD~s~~-------------------~~~~~~~d~ 139 (229)
...+|.|+||.+|..+..+... +.-+|.--|.... .+..+-+.+
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 3467999999999877432111 1124555565544 111345666
Q ss_pred CCCCCCCCceeEEEcccchhhh----------------------------------CHHHHHHHHHhccccCcEEEEEee
Q 027039 140 HNLPFFDEAFDVAFTAHLAEAL----------------------------------FPSRFVGEMERTVKIGGVCMVLME 185 (229)
Q Consensus 140 ~~~~~~~~~fD~V~~~~~~~~~----------------------------------~~~~~l~~~~~~LkpgG~lil~~~ 185 (229)
..--||+++.|+++|.+..|.+ |...+|+.=++-|+|||++++..-
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 6666889999999998433332 112456666677999999998774
Q ss_pred c
Q 027039 186 E 186 (229)
Q Consensus 186 ~ 186 (229)
.
T Consensus 211 g 211 (359)
T d1m6ex_ 211 G 211 (359)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.89 E-value=0.064 Score=39.21 Aligned_cols=92 Identities=17% Similarity=0.123 Sum_probs=61.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCC--ChhhHHHHhC-CCCeEEEecCCCCCC---------eEEEcCCCCCC------CCC
Q 027039 85 FKHLQGKSLLFNHSKVLCVSAGA--GHEVMAFNSI-GVADVTGVELMDSLP---------LVSRADPHNLP------FFD 146 (229)
Q Consensus 85 ~~~l~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~-g~~~v~~vD~s~~~~---------~~~~~d~~~~~------~~~ 146 (229)
+..+.....++++.+||-.|++. |..+..+++. |. +|++++-+++.. .++..+-.+.. ...
T Consensus 18 ~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~ 96 (182)
T d1v3va2 18 YFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASP 96 (182)
T ss_dssp HHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCT
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhc
Confidence 33445556779999999888876 5677777777 76 999998776522 12222222110 134
Q ss_pred CceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 147 EAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 147 ~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
..+|+|+-.- ..+.+++..+.|+|||+++++
T Consensus 97 ~Gvd~v~D~v------G~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 97 DGYDCYFDNV------GGEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp TCEEEEEESS------CHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCceeEEec------CchhhhhhhhhccCCCeEEee
Confidence 5699988632 134678899999999998854
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.76 E-value=0.17 Score=36.43 Aligned_cols=99 Identities=11% Similarity=-0.003 Sum_probs=58.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCC-hhhHHHHhC-CCCeEEEecCCCCCCe---------EEEc-CCCCCC------C
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAG-HEVMAFNSI-GVADVTGVELMDSLPL---------VSRA-DPHNLP------F 144 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G-~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~-d~~~~~------~ 144 (229)
+.+..+.....++++.+||-+|+|.+ ..+..++.. +..+|+++|.+++..+ ++.. +..+.. .
T Consensus 15 Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~ 94 (176)
T d2jhfa2 15 TGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM 94 (176)
T ss_dssp HHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHH
Confidence 33444455567899999999999753 344444444 7779999999988322 2211 111110 1
Q ss_pred CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..+.+|+|+-..- ....++.....+++||..+++...
T Consensus 95 ~~~G~D~vid~~G-----~~~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 95 SNGGVDFSFEVIG-----RLDTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp TTSCBSEEEECSC-----CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred hcCCCCEEEecCC-----chhHHHHHHHHHhcCCcceEEecC
Confidence 2356898886321 234456677778887544444443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.36 E-value=0.054 Score=39.45 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=56.3
Q ss_pred HHHhcccCCCCCeEEEEcC-C-CChhhHHHHhC-CCCeEEEecCCCCC---------CeEEEcCCCCCC------CCCCc
Q 027039 87 HLQGKSLLFNHSKVLCVSA-G-AGHEVMAFNSI-GVADVTGVELMDSL---------PLVSRADPHNLP------FFDEA 148 (229)
Q Consensus 87 ~l~~~~~~~~~~~vLDiG~-G-~G~~~~~l~~~-g~~~v~~vD~s~~~---------~~~~~~d~~~~~------~~~~~ 148 (229)
.+.....++++.+||=.|+ | .|..+..++.. |. ++++++-+++. -.++...-.++. .....
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCccCHHHHHHHHhCCCC
Confidence 3344556789999999884 2 36777777776 87 77777655441 112221111110 12457
Q ss_pred eeEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 149 FDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 149 fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
||+|+...- .+.+++..+.|+++|+++.+
T Consensus 95 ~d~v~d~~g------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 95 VDVVLNSLA------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEEECCC------THHHHHHHHTEEEEEEEEEC
T ss_pred EEEEEeccc------chHHHHHHHHhcCCCEEEEE
Confidence 999997432 23567788999999998854
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.07 E-value=0.23 Score=35.56 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=57.5
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCC-hhhHHHHh-CCCCeEEEecCCCCCCe---------EEEcCCCCCC-------C
Q 027039 83 HFFKHLQGKSLLFNHSKVLCVSAGAG-HEVMAFNS-IGVADVTGVELMDSLPL---------VSRADPHNLP-------F 144 (229)
Q Consensus 83 ~~~~~l~~~~~~~~~~~vLDiG~G~G-~~~~~l~~-~g~~~v~~vD~s~~~~~---------~~~~d~~~~~-------~ 144 (229)
+.+..+.....++++.+|+=+|+|.+ ..+..++. .+...|+++|.+++..+ ++..+-++.. .
T Consensus 15 Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~ 94 (175)
T d1cdoa2 15 TGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKM 94 (175)
T ss_dssp HHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhh
Confidence 33444455567899999999999984 33333333 37779999999987333 3322111110 1
Q ss_pred CCCceeEEEcccchhhhCHHHHHHHHHhccccCcEEEEEeec
Q 027039 145 FDEAFDVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 145 ~~~~fD~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
..+.+|+|+-..- ....+......+++||..++....
T Consensus 95 ~~~G~d~vid~~G-----~~~~~~~a~~~~~~g~~~~~~~g~ 131 (175)
T d1cdoa2 95 TNGGVDFSLECVG-----NVGVMRNALESCLKGWGVSVLVGW 131 (175)
T ss_dssp HTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred ccCCcceeeeecC-----CHHHHHHHHHHhhCCCcceeEEEe
Confidence 1345788775321 234456666777776555445544
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.087 Score=37.39 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=55.3
Q ss_pred CeEEEEcCCC-C-hhhHHHHhCCCCeEEEecCCCCCCeEEEcCCCC-----------CCCCCCceeEEEcccchhhhCHH
Q 027039 98 SKVLCVSAGA-G-HEVMAFNSIGVADVTGVELMDSLPLVSRADPHN-----------LPFFDEAFDVAFTAHLAEALFPS 164 (229)
Q Consensus 98 ~~vLDiG~G~-G-~~~~~l~~~g~~~v~~vD~s~~~~~~~~~d~~~-----------~~~~~~~fD~V~~~~~~~~~~~~ 164 (229)
++|+=||+|. | .++..|++.|+ +|+.++.++...........+ .+-....+|+|+.. ....+..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~--vka~~~~ 77 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVT--LKAWQVS 77 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEEC--SCGGGHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEe--ecccchH
Confidence 5889999986 3 45666667787 999999988754422211111 01112468888863 2222357
Q ss_pred HHHHHHHhccccCcEEEEEeec
Q 027039 165 RFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 165 ~~l~~~~~~LkpgG~lil~~~~ 186 (229)
++++.+...++++..++.....
T Consensus 78 ~~~~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 78 DAVKSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp HHHHHHHTTSCTTSCEEEECSS
T ss_pred HHHHhhccccCcccEEeeccCc
Confidence 7889999999998887655443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.84 E-value=0.27 Score=35.90 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=56.0
Q ss_pred hcccCCCC--CeEEEEcC--CCChhhHHHHhC-CCCeEEEecCCCCC----------CeEEEcCCCCCC-----CCCCce
Q 027039 90 GKSLLFNH--SKVLCVSA--GAGHEVMAFNSI-GVADVTGVELMDSL----------PLVSRADPHNLP-----FFDEAF 149 (229)
Q Consensus 90 ~~~~~~~~--~~vLDiG~--G~G~~~~~l~~~-g~~~v~~vD~s~~~----------~~~~~~d~~~~~-----~~~~~f 149 (229)
....++++ ..||--|+ |-|..+..+++. |...|++++.+++. -.++...-.+.. ..+..+
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~Gv 101 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGV 101 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCE
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCc
Confidence 33455666 67998874 458999999986 87678877666441 112222211111 123569
Q ss_pred eEEEcccchhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 150 DVAFTAHLAEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 150 D~V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
|+|+-.-- .+.+....+.|+|||+++.+
T Consensus 102 Dvv~D~vG------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 102 DVYFDNVG------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp EEEEESSC------HHHHHHHHTTEEEEEEEEEC
T ss_pred eEEEecCC------chhHHHHhhhccccccEEEe
Confidence 99985321 34678899999999998744
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.46 E-value=0.66 Score=32.71 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=61.8
Q ss_pred CeEEEEcCCC--ChhhHHHHhCCCCeEEEecCCCCCCe---------EEEcCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 98 SKVLCVSAGA--GHEVMAFNSIGVADVTGVELMDSLPL---------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 98 ~~vLDiG~G~--G~~~~~l~~~g~~~v~~vD~s~~~~~---------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
++|.=||+|. +.++..+.+.|+ +|+++|.+++..+ ....+.+.. ...|+|+..- .. ..-.++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIilav-p~-~~~~~v 73 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCT-PI-QLILPT 73 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECS-CH-HHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecccc----cccccccccC-cH-hhhhhh
Confidence 4678888884 456667777788 9999999865322 111222211 4678888632 11 124678
Q ss_pred HHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeeec
Q 027039 167 VGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTVN 213 (229)
Q Consensus 167 l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 213 (229)
++++...++++-.++ .+............++. .+++..+-+.++
T Consensus 74 l~~l~~~l~~~~iv~-~~~s~~~~~~~~~~~~~--~~~~~~h~~~~~ 117 (165)
T d2f1ka2 74 LEKLIPHLSPTAIVT-DVASVKTAIAEPASQLW--SGFIGGHPMAGT 117 (165)
T ss_dssp HHHHGGGSCTTCEEE-ECCSCCHHHHHHHHHHS--TTCEEEEECCCC
T ss_pred hhhhhhhccccccee-eccccchHHHHHHHHhh--cccccceeeecc
Confidence 888888888888654 44333333333333433 356666655443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.22 E-value=1 Score=31.71 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=63.7
Q ss_pred eEEEEcCCC--ChhhHHHHhCCC-CeEEEecCCCCCCe---------EEEcCCCCCCCCCCceeEEEcccchhhhCHHHH
Q 027039 99 KVLCVSAGA--GHEVMAFNSIGV-ADVTGVELMDSLPL---------VSRADPHNLPFFDEAFDVAFTAHLAEALFPSRF 166 (229)
Q Consensus 99 ~vLDiG~G~--G~~~~~l~~~g~-~~v~~vD~s~~~~~---------~~~~d~~~~~~~~~~fD~V~~~~~~~~~~~~~~ 166 (229)
+|+=||||. |.++..|.+.|. .+|+++|.+++..+ ....+... ..+...|+|+...-.. .-.+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~dlIila~p~~--~~~~v 78 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAK--VEDFSPDFVMLSSPVR--TFREI 78 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGG--GGGTCCSEEEECSCHH--HHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhh--hhccccccccccCCch--hhhhh
Confidence 588899986 456667777753 48999999876332 11111111 1234678888642111 13567
Q ss_pred HHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeEeeeeee
Q 027039 167 VGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVDAANVTV 212 (229)
Q Consensus 167 l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 212 (229)
+.++.+.++++..+. -+........+.+.+..+. +|+..+-+.+
T Consensus 79 l~~l~~~~~~~~ii~-d~~s~k~~~~~~~~~~~~~-~~i~~hPm~G 122 (171)
T d2g5ca2 79 AKKLSYILSEDATVT-DQGSVKGKLVYDLENILGK-RFVGGHPIAG 122 (171)
T ss_dssp HHHHHHHSCTTCEEE-ECCSCCTHHHHHHHHHHGG-GEECEEEECC
T ss_pred hhhhhcccccccccc-ccccccHHHHHHHHHhhcc-cccccccccc
Confidence 788888898887654 3443333344445544443 6887776654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.96 E-value=0.088 Score=38.92 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCCCe--------EEEcCCCC-------------CC--CC-----
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSLPL--------VSRADPHN-------------LP--FF----- 145 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~--------~~~~d~~~-------------~~--~~----- 145 (229)
++.+|+-||+|. |..+...+.. |. +|+.+|.++...+ |+..+... .. +.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 567999999997 7777777766 87 9999999987322 32211110 00 00
Q ss_pred -----CCceeEEEcccchhhh-CHHHHHHHHHhccccCcEEE
Q 027039 146 -----DEAFDVAFTAHLAEAL-FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 146 -----~~~fD~V~~~~~~~~~-~~~~~l~~~~~~LkpgG~li 181 (229)
-...|+|+.......- -|.-+=+++.+.+|||..++
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 1257999976433322 34334578999999999855
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=89.71 E-value=0.28 Score=37.06 Aligned_cols=73 Identities=11% Similarity=0.174 Sum_probs=44.2
Q ss_pred EEEcCCCCC--CCCCCceeEEEcc--c-c-----------hhhh-CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHH
Q 027039 134 VSRADPHNL--PFFDEAFDVAFTA--H-L-----------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIV 196 (229)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~V~~~--~-~-----------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~ 196 (229)
+.++|..+. .++++++|+|++. + . .... ...+.++++.|+|||||.+++.... .....+.
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---~~~~~~~ 83 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---FNCAFIC 83 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---HHHHHHH
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---hhhhhhh
Confidence 556665441 2567889988886 1 1 0111 2356789999999999998755443 2334455
Q ss_pred HHHhcCceeEeee
Q 027039 197 ELFRTSRFVDAAN 209 (229)
Q Consensus 197 ~l~~~~~~~~~~~ 209 (229)
..+...++.....
T Consensus 84 ~~~~~~g~~~~~~ 96 (256)
T d1g60a_ 84 QYLVSKGMIFQNW 96 (256)
T ss_dssp HHHHHTTCEEEEE
T ss_pred hhhhcccceeeee
Confidence 5566555554433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=89.70 E-value=0.054 Score=39.35 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=54.4
Q ss_pred cccCCCCCeEEEEcC-CC-ChhhHHHHhC-CCCeEEEecCCCCCCeEE-------EcCCCCCC---CCCCceeEEEcccc
Q 027039 91 KSLLFNHSKVLCVSA-GA-GHEVMAFNSI-GVADVTGVELMDSLPLVS-------RADPHNLP---FFDEAFDVAFTAHL 157 (229)
Q Consensus 91 ~~~~~~~~~vLDiG~-G~-G~~~~~l~~~-g~~~v~~vD~s~~~~~~~-------~~d~~~~~---~~~~~fD~V~~~~~ 157 (229)
...++++.+||-.|+ |. |..+..+++. |. +|++++.+++..+.. ..|..+.. -....+|+|+-. .
T Consensus 22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~-~ 99 (171)
T d1iz0a2 22 RAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEV-R 99 (171)
T ss_dssp HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEEC-S
T ss_pred HhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeeehhhhhhhhhccccccccccc-c
Confidence 346799999999985 33 6777777777 87 899998877633210 11112211 113468998852 1
Q ss_pred hhhhCHHHHHHHHHhccccCcEEEEE
Q 027039 158 AEALFPSRFVGEMERTVKIGGVCMVL 183 (229)
Q Consensus 158 ~~~~~~~~~l~~~~~~LkpgG~lil~ 183 (229)
. ..+....+.|+|||+++++
T Consensus 100 G------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 100 G------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp C------TTHHHHHTTEEEEEEEEEC
T ss_pred c------hhHHHHHHHHhcCCcEEEE
Confidence 1 1256778899999998744
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.57 E-value=0.37 Score=36.82 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=47.1
Q ss_pred EEEcCCCCC--CCCCCceeEEEcc--c-c--------hhhh-CHHHHHHHHHhccccCcEEEEEeecCC------cccHH
Q 027039 134 VSRADPHNL--PFFDEAFDVAFTA--H-L--------AEAL-FPSRFVGEMERTVKIGGVCMVLMEECA------GREIK 193 (229)
Q Consensus 134 ~~~~d~~~~--~~~~~~fD~V~~~--~-~--------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~~~------~~~~~ 193 (229)
++.+|..+. .++++++|+|+.. + . .... .....+.++.|+|||||.+++...... .....
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~ 86 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLIS 86 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHH
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhh
Confidence 445554441 3568999999987 1 1 1112 246778999999999999998765532 22344
Q ss_pred HHHHHHhcCceeEeee
Q 027039 194 QIVELFRTSRFVDAAN 209 (229)
Q Consensus 194 ~l~~l~~~~~~~~~~~ 209 (229)
.+.......++.....
T Consensus 87 ~~~~~~~~~~~~~~~~ 102 (279)
T d1eg2a_ 87 IISHMRQNSKMLLANL 102 (279)
T ss_dssp HHHHHHHHCCCEEEEE
T ss_pred HHHHHHhccCceeeee
Confidence 4555666666554433
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=89.10 E-value=0.012 Score=43.24 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCC-ChhhHHHHhC-CCCeEEEecCCCCC-----------CeEEEcCCCCCCCCCCceeEEEcccchhhh-
Q 027039 96 NHSKVLCVSAGA-GHEVMAFNSI-GVADVTGVELMDSL-----------PLVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 96 ~~~~vLDiG~G~-G~~~~~l~~~-g~~~v~~vD~s~~~-----------~~~~~~d~~~~~~~~~~fD~V~~~~~~~~~- 161 (229)
++.+|+-||+|. |..+...+.. |. +|++.|.+++. ++....+-+.+.-.-...|+|+.......-
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 578999999997 7777777776 76 99999999762 233333322221112368999986433222
Q ss_pred CHHHHHHHHHhccccCcEEE
Q 027039 162 FPSRFVGEMERTVKIGGVCM 181 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~li 181 (229)
-|.-+-+++.+.+|||..++
T Consensus 110 aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 110 APILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCCCBCHHHHTTSCTTCEEE
T ss_pred cCeeecHHHHhhcCCCcEEE
Confidence 34334478999999999855
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=88.11 E-value=0.7 Score=33.11 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=66.3
Q ss_pred HHhcccCCCCCeEEEEcCCC--ChhhHHHHhC-CCCeEEEecCCCCCCe---------EEEcC---CCC-CCCCCCceeE
Q 027039 88 LQGKSLLFNHSKVLCVSAGA--GHEVMAFNSI-GVADVTGVELMDSLPL---------VSRAD---PHN-LPFFDEAFDV 151 (229)
Q Consensus 88 l~~~~~~~~~~~vLDiG~G~--G~~~~~l~~~-g~~~v~~vD~s~~~~~---------~~~~d---~~~-~~~~~~~fD~ 151 (229)
+......+++..||=-|++. |..+..+++. |. +|+++.-+++..+ ++..+ ... .....+.+|+
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceE
Confidence 33344455677788777543 6788888887 87 8999988776322 22111 111 1233567999
Q ss_pred EEcccchhhhCHHHHHHHHHhccccCcEEEEEeecCCcc-cHHHHHHHHhcCceeEe
Q 027039 152 AFTAHLAEALFPSRFVGEMERTVKIGGVCMVLMEECAGR-EIKQIVELFRTSRFVDA 207 (229)
Q Consensus 152 V~~~~~~~~~~~~~~l~~~~~~LkpgG~lil~~~~~~~~-~~~~l~~l~~~~~~~~~ 207 (229)
|+-..- .+.+.+..+.|+|+|+++++-...+.. +.....-++++..+..+
T Consensus 94 vid~vg------g~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~ 144 (167)
T d1tt7a2 94 AVDPVG------GKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGI 144 (167)
T ss_dssp EEESCC------THHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEEC
T ss_pred EEecCc------HHHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEE
Confidence 886421 235778999999999988544333322 22222234556555554
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=84.88 E-value=0.51 Score=36.76 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=59.4
Q ss_pred CeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC---------CCeEEEcCCCCCCCCC-CceeEEEccc------ch---
Q 027039 98 SKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS---------LPLVSRADPHNLPFFD-EAFDVAFTAH------LA--- 158 (229)
Q Consensus 98 ~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~---------~~~~~~~d~~~~~~~~-~~fD~V~~~~------~~--- 158 (229)
++|+|+=||.|-+...+...|+..+.++|+++. +-..+.+|+.++...+ ...|+++... ..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~~ 80 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGSL 80 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSCC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeeccccccccccccc
Confidence 479999999999998888889877779999976 3347789998875322 4689999761 10
Q ss_pred hhh-CHH-HHH---HHHHhccccCcEEEEEeec
Q 027039 159 EAL-FPS-RFV---GEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 159 ~~~-~~~-~~l---~~~~~~LkpgG~lil~~~~ 186 (229)
... +.. .++ -++.+.++|.-.++=.|..
T Consensus 81 ~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~ 113 (324)
T d1dcta_ 81 RGIDDPRGKLFYEYIRILKQKKPIFFLAENVKG 113 (324)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred ccccccccchHHHHHHHHHhhCCceeecccccc
Confidence 001 232 222 3455677897665544443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.76 E-value=0.36 Score=37.56 Aligned_cols=40 Identities=8% Similarity=-0.028 Sum_probs=35.4
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCCeE
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLPLV 134 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~~~ 134 (229)
..++..|||.=||+|..+.+..+.|. +.+|+|+++..++.
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~ 287 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAA 287 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHH
Confidence 47899999999999999999888886 99999999886554
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=82.08 E-value=0.39 Score=37.84 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCCCC--------eEEEcCCCCCCCC-CCceeEEEccc------ch-
Q 027039 95 FNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDSLP--------LVSRADPHNLPFF-DEAFDVAFTAH------LA- 158 (229)
Q Consensus 95 ~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~~~--------~~~~~d~~~~~~~-~~~fD~V~~~~------~~- 158 (229)
..+.+|+|+=||.|.+...+...|+.-+.++|+++... +..++|+.++... -..+|+++... ..
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ag 88 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISG 88 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTS
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCCCcCchhcCchhhcceeeeeecccccchhhhhh
Confidence 36789999999999999999888986778899987622 2445777765422 24689999761 11
Q ss_pred --hhh-CH----HHHHHHHHhccccCcEEEEEeecC----CcccHHHHHHHHhcCce
Q 027039 159 --EAL-FP----SRFVGEMERTVKIGGVCMVLMEEC----AGREIKQIVELFRTSRF 204 (229)
Q Consensus 159 --~~~-~~----~~~l~~~~~~LkpgG~lil~~~~~----~~~~~~~l~~l~~~~~~ 204 (229)
... ++ ..-+-++.+.++|.=.++=-|... ....++.+.+.++..+.
T Consensus 89 ~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY 145 (327)
T d2c7pa1 89 KQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDY 145 (327)
T ss_dssp CCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTB
T ss_pred hhcCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCC
Confidence 111 22 222344556678875544334331 22235555666665443
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.78 E-value=1.3 Score=31.76 Aligned_cols=122 Identities=10% Similarity=0.007 Sum_probs=67.9
Q ss_pred cCCCCCeEEEEcCCCChhhHHHHhC----CCCeEEEecCCCCCC------eEEEcCCCCCCCCCCceeEEEcccchhhh-
Q 027039 93 LLFNHSKVLCVSAGAGHEVMAFNSI----GVADVTGVELMDSLP------LVSRADPHNLPFFDEAFDVAFTAHLAEAL- 161 (229)
Q Consensus 93 ~~~~~~~vLDiG~G~G~~~~~l~~~----g~~~v~~vD~s~~~~------~~~~~d~~~~~~~~~~fD~V~~~~~~~~~- 161 (229)
..-.|.++.-+|-| ..+..+++. |. +|+.+|+.|... -|.....++. ...-|++++.--..+.
T Consensus 20 ~~l~Gk~v~V~GyG--~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~v~~~~~a---~~~adivvtaTGn~~vI 93 (163)
T d1li4a1 20 VMIAGKVAVVAGYG--DVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYEVTTMDEA---CQEGNIFVTTTGCIDII 93 (163)
T ss_dssp CCCTTCEEEEECCS--HHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEECCHHHH---TTTCSEEEECSSCSCSB
T ss_pred ceecCCEEEEeccc--cccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceEeeehhhh---hhhccEEEecCCCccch
Confidence 34578888887766 555555443 66 999999987521 1333322221 2456888875222111
Q ss_pred CHHHHHHHHHhccccCcEEEEEeecCCcccHHHHHHHHhcCceeE--eeeeeecCCeeEEEEEEecc
Q 027039 162 FPSRFVGEMERTVKIGGVCMVLMEECAGREIKQIVELFRTSRFVD--AANVTVNGSNMTRILMRRTR 226 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~lil~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (229)
. .+-.+.+|+|-.+.-+-....+-+...+.+.-...+.++ +..++.++.+ +++++-.++
T Consensus 94 ~-----~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~l~dG~-~i~lLaeGr 154 (163)
T d1li4a1 94 L-----GRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGR-RIILLAEGR 154 (163)
T ss_dssp C-----HHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEECTTSC-EEEEEGGGS
T ss_pred h-----HHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEEeCCCC-EEEEEeCCC
Confidence 2 345667888877663333444556766766544443343 4455666554 566654443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=80.56 E-value=0.66 Score=35.96 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=37.3
Q ss_pred eEEEcCCCC--CCCCCCceeEEEcc--c-c-----------hhhh-CHHHHHHHHHhccccCcEEEEEeec
Q 027039 133 LVSRADPHN--LPFFDEAFDVAFTA--H-L-----------AEAL-FPSRFVGEMERTVKIGGVCMVLMEE 186 (229)
Q Consensus 133 ~~~~~d~~~--~~~~~~~fD~V~~~--~-~-----------~~~~-~~~~~l~~~~~~LkpgG~lil~~~~ 186 (229)
.++++|..+ -.++++++|+|+.. + . ...+ ...+.+.++.++|||+|.+++....
T Consensus 14 ~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 14 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence 466777554 12568899999986 1 1 0111 2467789999999999999987654
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| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.24 E-value=0.65 Score=34.87 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCCChhhHHHHhCCCCeEEEecCCCC
Q 027039 94 LFNHSKVLCVSAGAGHEVMAFNSIGVADVTGVELMDS 130 (229)
Q Consensus 94 ~~~~~~vLDiG~G~G~~~~~l~~~g~~~v~~vD~s~~ 130 (229)
..+|..|||.=||+|..+.+..+.|- +.+|+|+++.
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~ 245 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAE 245 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHH
Confidence 37899999999999999999888875 9999999865
|