Citrus Sinensis ID: 027047

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MNSRELTLVSTAAVLGALASAVAFRFFFSSNPKKLLSRIDSSQSQNGVVASKVVSSRSPFDPSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFEER
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEcccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHcccEEEEEEccccEEEEEEccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHcccccccEEEEEEccccEEEEEEccccccccccccccccccccccccccccccEEEHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEcccccEEEEEcccc
MNSRELTLVSTAAVLGALASAVAFRFFFSSNPKKLLSRIdssqsqngvvaskvvssrspfdpskrkgylswDDYFMAIAFLSAerskdpnrqvgaclvsqdgiilgigyngfprgcsddklpwakkskigdpletkypyvCHAEVNAILntnhasaaGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGvkvrkhqpQMRQILITFEER
MNSRELTLVSTAAVLGALASAVAFRFFFSSNPKKLLSridssqsqngvvaskvvssrspfdpskrkgylsWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMagvkvrkhqpQMRQILITFEER
MNSREltlvstaavlgalasavafrfffssNPKKLLSRIDSSQSQNGVVASKVVSSRSPFDPSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFEER
******TLVSTAAVLGALASAVAFRFFFS*************************************GYLSWDDYFMAIAFLSAE*****NRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK******QILI*****
****ELTLVSTAAVLGALASAVAFRFFFSS****************************************WDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE**
MNSRELTLVSTAAVLGALASAVAFRFFFSSNPKKLLS**************************KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFEER
*****LTLVSTAAVLGALASAVAFRFFFS*********************************SKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE**
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNSRELTLVSTAAVLGALASAVAFRFFFSSNPKKLLSRIDSSQSQNGVVASKVVSSRSPFDPSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFEER
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query229 2.2.26 [Sep-21-2011]
Q5RC69178 Deoxycytidylate deaminase yes no 0.698 0.898 0.567 1e-50
P32321178 Deoxycytidylate deaminase yes no 0.698 0.898 0.560 7e-50
Q9VWA2203 Probable deoxycytidylate yes no 0.772 0.871 0.535 9e-50
Q5M9G0178 Deoxycytidylate deaminase yes no 0.698 0.898 0.536 6e-49
Q8K2D6178 Deoxycytidylate deaminase yes no 0.698 0.898 0.536 6e-49
P30648197 Probable deoxycytidylate yes no 0.585 0.680 0.450 2e-27
P06773312 Deoxycytidylate deaminase yes no 0.598 0.439 0.346 9e-15
O43012322 Deoxycytidylate deaminase yes no 0.628 0.447 0.362 2e-14
P33968147 Uncharacterized deaminase yes no 0.576 0.897 0.375 2e-14
P32393189 ComE operon protein 2 OS= yes no 0.624 0.756 0.313 5e-12
>sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1 Back     alignment and function desciption
 Score =  199 bits (506), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 121/164 (73%), Gaps = 4/164 (2%)

Query: 64  KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPW 123
           KR  YL W +YFMA+AFLSA+RSKDPN QVGAC+V+ +  I+GIGYNG P GCSDD+LPW
Sbjct: 8   KRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDQLPW 67

Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
            + +K  + L+TKYPYVCHAE+NAI+N N     G  +YV +FPCNECAK+IIQ+G+ EV
Sbjct: 68  RRTAK--NKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEV 125

Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE 227
           I F+  + ++SD A  A+  L  MAGV  RK  P+  +I+I F+
Sbjct: 126 I-FMSDKYHDSDEA-TAARLLFDMAGVTFRKFIPKCSKIVIDFD 167
Supplies the nucleotide substrate for thymidylate synthetase.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 1EC: 2
>sp|P32321|DCTD_HUMAN Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2 Back     alignment and function description
>sp|Q9VWA2|DCTD_DROME Probable deoxycytidylate deaminase OS=Drosophila melanogaster GN=CG6951 PE=2 SV=1 Back     alignment and function description
>sp|Q5M9G0|DCTD_RAT Deoxycytidylate deaminase OS=Rattus norvegicus GN=Dctd PE=2 SV=1 Back     alignment and function description
>sp|Q8K2D6|DCTD_MOUSE Deoxycytidylate deaminase OS=Mus musculus GN=Dctd PE=2 SV=1 Back     alignment and function description
>sp|P30648|DCTD_CAEEL Probable deoxycytidylate deaminase OS=Caenorhabditis elegans GN=ZK643.2 PE=3 SV=1 Back     alignment and function description
>sp|P06773|DCTD_YEAST Deoxycytidylate deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCD1 PE=1 SV=2 Back     alignment and function description
>sp|O43012|DCTD_SCHPO Deoxycytidylate deaminase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2G2.13c PE=3 SV=2 Back     alignment and function description
>sp|P33968|YLXG_VIBFI Uncharacterized deaminase in luxG 3'region OS=Vibrio fischeri PE=3 SV=1 Back     alignment and function description
>sp|P32393|COMEB_BACSU ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
225456327229 PREDICTED: deoxycytidylate deaminase [Vi 0.991 0.991 0.860 1e-112
224136175229 predicted protein [Populus trichocarpa] 0.982 0.982 0.835 1e-105
255540237224 deoxycytidylate deaminase, putative [Ric 0.965 0.986 0.815 1e-104
118483842229 unknown [Populus trichocarpa] 0.982 0.982 0.831 1e-104
449454826226 PREDICTED: deoxycytidylate deaminase-lik 0.973 0.986 0.815 1e-103
42565719232 dCMP deaminase [Arabidopsis thaliana] gi 0.986 0.974 0.794 1e-103
116831274233 unknown [Arabidopsis thaliana] 0.986 0.969 0.794 1e-103
297819466232 cytidine/deoxycytidylate deaminase famil 0.986 0.974 0.794 1e-102
224122016225 predicted protein [Populus trichocarpa] 0.973 0.991 0.807 1e-100
115440135248 Os01g0765000 [Oryza sativa Japonica Grou 0.794 0.733 0.846 3e-89
>gi|225456327|ref|XP_002283817.1| PREDICTED: deoxycytidylate deaminase [Vitis vinifera] gi|297734422|emb|CBI15669.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/229 (86%), Positives = 208/229 (90%), Gaps = 2/229 (0%)

Query: 1   MNSRELTLVSTAAVLGALASAVAFRFFFSSNPKKLLSRIDSSQS-QNGVVASKVVSSRSP 59
           MNSRE+ LVS A + GALAS +A RFFF+ NPK   S   SSQ+ QNGVV++K   S+SP
Sbjct: 1   MNSREVALVSAATIFGALASTLAIRFFFT-NPKNYFSGKHSSQNGQNGVVSTKTAHSQSP 59

Query: 60  FDPSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDD 119
           FDPSKR+GYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQ+G+ILGIGYNGFPRGCSDD
Sbjct: 60  FDPSKRRGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQNGVILGIGYNGFPRGCSDD 119

Query: 120 KLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSG 179
           KLPWAKKSK GDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSG
Sbjct: 120 KLPWAKKSKTGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSG 179

Query: 180 VSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFEE 228
           VSEVIYFVEKRLNNS VAYIASHKLLSMAGVKVRKHQPQM QILI FEE
Sbjct: 180 VSEVIYFVEKRLNNSQVAYIASHKLLSMAGVKVRKHQPQMDQILIKFEE 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224136175|ref|XP_002322258.1| predicted protein [Populus trichocarpa] gi|222869254|gb|EEF06385.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255540237|ref|XP_002511183.1| deoxycytidylate deaminase, putative [Ricinus communis] gi|223550298|gb|EEF51785.1| deoxycytidylate deaminase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118483842|gb|ABK93812.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454826|ref|XP_004145155.1| PREDICTED: deoxycytidylate deaminase-like [Cucumis sativus] gi|449474257|ref|XP_004154120.1| PREDICTED: deoxycytidylate deaminase-like [Cucumis sativus] gi|449503680|ref|XP_004162123.1| PREDICTED: deoxycytidylate deaminase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42565719|ref|NP_190423.2| dCMP deaminase [Arabidopsis thaliana] gi|91806546|gb|ABE66000.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] gi|332644907|gb|AEE78428.1| dCMP deaminase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116831274|gb|ABK28591.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297819466|ref|XP_002877616.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323454|gb|EFH53875.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224122016|ref|XP_002318729.1| predicted protein [Populus trichocarpa] gi|222859402|gb|EEE96949.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115440135|ref|NP_001044347.1| Os01g0765000 [Oryza sativa Japonica Group] gi|57899567|dbj|BAD87146.1| deoxycytidylate deaminase-like [Oryza sativa Japonica Group] gi|113533878|dbj|BAF06261.1| Os01g0765000 [Oryza sativa Japonica Group] gi|215678846|dbj|BAG95283.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
TAIR|locus:2114490232 AT3G48540 [Arabidopsis thalian 0.855 0.844 0.803 3.1e-83
ZFIN|ZDB-GENE-050417-116201 dctd "dCMP deaminase" [Danio r 0.694 0.791 0.546 2.6e-47
UNIPROTKB|A6QQC3178 DCTD "Uncharacterized protein" 0.698 0.898 0.554 5.4e-47
UNIPROTKB|D6RBJ9169 DCTD "Deoxycytidylate deaminas 0.698 0.946 0.560 8.8e-47
UNIPROTKB|P32321178 DCTD "Deoxycytidylate deaminas 0.698 0.898 0.560 8.8e-47
UNIPROTKB|F1RT14178 DCTD "Uncharacterized protein" 0.698 0.898 0.548 8.8e-47
FB|FBgn0036959203 CG6951 [Drosophila melanogaste 0.772 0.871 0.535 2.3e-46
MGI|MGI:2444529178 Dctd "dCMP deaminase" [Mus mus 0.698 0.898 0.536 1e-45
RGD|1359671178 Dctd "dCMP deaminase" [Rattus 0.698 0.898 0.536 1e-45
UNIPROTKB|Q5M9G0178 Dctd "Deoxycytidylate deaminas 0.698 0.898 0.536 1e-45
TAIR|locus:2114490 AT3G48540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 159/198 (80%), Positives = 174/198 (87%)

Query:    31 NPKKLLSRIDSSQSQNGVVASKVVSSRSPFDPSKRKGYLSWDDYFMAIAFLSAERSKDPN 90
             NPK   SR  +S   + +  S+   +  PF P KR GYLSWDDYFMAIAFLSAERSKDPN
Sbjct:    30 NPKNPKSRKFTSTEISAI--SRKFPALDPFSPLKRNGYLSWDDYFMAIAFLSAERSKDPN 87

Query:    91 RQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILN 150
             RQVGACLVSQ+G+ILGIGYNGFPRGCSDDKLPWAKKS+ GDPLETKYPYVCHAEVNAILN
Sbjct:    88 RQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSRTGDPLETKYPYVCHAEVNAILN 147

Query:   151 TNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGV 210
             TNHASAAGQ+LYVTMFPCNECAKII+QSGV+EVIYFVEKR N+SDVAY+ASHKLLSMA V
Sbjct:   148 TNHASAAGQKLYVTMFPCNECAKIILQSGVAEVIYFVEKRPNDSDVAYVASHKLLSMANV 207

Query:   211 KVRKHQPQMRQILITFEE 228
             KVRKHQP+M +ILI FEE
Sbjct:   208 KVRKHQPEMDEILIKFEE 225
GO:0003824 "catalytic activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA;ISS
ZFIN|ZDB-GENE-050417-116 dctd "dCMP deaminase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A6QQC3 DCTD "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D6RBJ9 DCTD "Deoxycytidylate deaminase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P32321 DCTD "Deoxycytidylate deaminase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RT14 DCTD "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0036959 CG6951 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2444529 Dctd "dCMP deaminase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359671 Dctd "dCMP deaminase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M9G0 Dctd "Deoxycytidylate deaminase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8K2D6DCTD_MOUSE3, ., 5, ., 4, ., 1, 20.53650.69860.8988yesno
Q5RC69DCTD_PONAB3, ., 5, ., 4, ., 1, 20.56700.69860.8988yesno
P32321DCTD_HUMAN3, ., 5, ., 4, ., 1, 20.56090.69860.8988yesno
Q5M9G0DCTD_RAT3, ., 5, ., 4, ., 1, 20.53650.69860.8988yesno
Q9VWA2DCTD_DROME3, ., 5, ., 4, ., 1, 20.53510.77290.8719yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.40.766
3rd Layer3.5.4.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
cd01286131 cd01286, deoxycytidylate_deaminase, Deoxycytidylat 8e-52
COG2131164 COG2131, ComEB, Deoxycytidylate deaminase [Nucleot 1e-42
cd0078696 cd00786, cytidine_deaminase-like, Cytidine and deo 2e-27
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 2e-26
TIGR02571151 TIGR02571, ComEB, ComE operon protein 2 1e-18
PHA02588168 PHA02588, cd, deoxycytidylate deaminase; Provision 5e-18
COG0117146 COG0117, RibD, Pyrimidine deaminase [Coenzyme meta 3e-13
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 1e-11
cd01284115 cd01284, Riboflavin_deaminase-reductase, Riboflavi 5e-11
TIGR00326 344 TIGR00326, eubact_ribD, riboflavin biosynthesis pr 1e-08
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 3e-08
PRK10786 367 PRK10786, ribD, bifunctional diaminohydroxyphospho 2e-07
pfam14439113 pfam14439, Bd3614-deam, Bd3614-like deaminase 0.002
>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain Back     alignment and domain information 
 Score =  163 bits (415), Expect = 8e-52
 Identities = 53/116 (45%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 72  DDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGD 131
           D+YFMAIA L+A RS  P RQVGA +V    II   GYNG P G         ++  +  
Sbjct: 1   DEYFMAIARLAALRSTCPRRQVGAVIVKDKRII-STGYNGSPSGLPHCAEVGCERDDLPS 59

Query: 132 PLETKYPYVCHAEVNAILNT--NHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIY 185
             + K     HAE NAIL    +  S  G  LYVT+FPC ECAK+IIQ+G+ +V+Y
Sbjct: 60  GEDQKCCRTVHAEQNAILQAARHGVSLEGATLYVTLFPCIECAKLIIQAGIKKVVY 115

Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. Length = 131
>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2 Back     alignment and domain information
>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase Back     alignment and domain information
>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD Back     alignment and domain information
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>gnl|CDD|182729 PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>gnl|CDD|206605 pfam14439, Bd3614-deam, Bd3614-like deaminase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 229
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 100.0
TIGR02571151 ComEB ComE operon protein 2. This protein is found 100.0
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 100.0
PHA02588168 cd deoxycytidylate deaminase; Provisional 100.0
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.97
PRK10860172 tRNA-specific adenosine deaminase; Provisional 99.97
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 99.96
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 99.95
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 99.95
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.95
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 99.94
cd01285109 nucleoside_deaminase Nucleoside deaminases include 99.94
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 99.94
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 99.92
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.91
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 99.87
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.63
KOG2771344 consensus Subunit of tRNA-specific adenosine-34 de 99.28
PF14439136 Bd3614-deam: Bd3614-like deaminase 99.21
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 99.07
PRK06848139 hypothetical protein; Validated 98.77
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 98.76
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 98.65
PRK08298136 cytidine deaminase; Validated 98.63
PRK12411132 cytidine deaminase; Provisional 98.59
PRK05578131 cytidine deaminase; Validated 98.59
TIGR01355 283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 98.58
PLN02402 303 cytidine deaminase 98.42
KOG0833173 consensus Cytidine deaminase [Nucleotide transport 98.37
PLN02182 339 cytidine deaminase 98.18
PRK09027 295 cytidine deaminase; Provisional 98.17
PRK09027295 cytidine deaminase; Provisional 98.11
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 97.55
PLN02402303 cytidine deaminase 96.92
PF14437146 MafB19-deam: MafB19-like deaminase 96.32
PF08210188 APOBEC_N: APOBEC-like N-terminal domain; InterPro: 96.07
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 95.71
PF08211124 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam 95.13
PF14440118 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase 90.33
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-45  Score=311.43  Aligned_cols=218  Identities=54%  Similarity=0.852  Sum_probs=191.1

Q ss_pred             CCcccchhhhhhHHhhhhhhhhhhhccccCCCCccccccccccccCC-ceeeeeecCCCCCCccccCCCChHHHHHHHHH
Q 027047            1 MNSRELTLVSTAAVLGALASAVAFRFFFSSNPKKLLSRIDSSQSQNG-VVASKVVSSRSPFDPSKRKGYLSWDDYFMAIA   79 (229)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~de~~M~~A   79 (229)
                      |++|+|++.|+|+.+|++++++++||++ +++.++   .-.+++.+- +++.+++++.++|  .+++.+++||++||.+|
T Consensus         1 ~~~~~ll~~~ts~~f~~l~s~~~~r~~s-~~~~~~---~~~~~l~~~i~~i~~~lp~~~~~--~k~~~~lswd~yFM~iA   74 (230)
T KOG3127|consen    1 MPERSLLLESTSAEFGALMSAAAFRFFS-SNPKNP---KLRKFLINNISNILKKLPDLDPF--LKRNGYLSWDDYFMAIA   74 (230)
T ss_pred             CchHHHHhhhhhhhhhhhhHHHHHhhhc-cCccch---hhhhhhhhhHHHHhhhchhhccc--cccccCccHHHHHHHHH
Confidence            7899999999999999999999999998 454333   112333343 3588999999999  89999999999999999


Q ss_pred             HHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCCcHHHHHHHHccccCCCCc
Q 027047           80 FLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQ  159 (229)
Q Consensus        80 ~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~HAE~~Ai~~a~~~~~~g~  159 (229)
                      ...|++|+||+++||||||++++.||++|||++|+||+++.+||.+.....+ ++.+|.+++|||+|||.++++..+.++
T Consensus        75 ~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~-~~~k~~yv~HAE~NAi~~~~~~~~~~~  153 (230)
T KOG3127|consen   75 FLSAKRSKDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTN-LDLKYCYVVHAEENAILNKGRERVGGC  153 (230)
T ss_pred             HHHHHhccCcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccC-CCcceEEEeehHHHHHHHhCccccCCc
Confidence            9999999999999999999999999999999999999999999999665443 678999999999999999998899999


Q ss_pred             EEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEechhHHHHhhhcc
Q 027047          160 RLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE  227 (229)
Q Consensus       160 tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~~~~~~~~~~~  227 (229)
                      ++|+|+.||..|++.|+++||++|+|+..+.-  +.+....+..+|..+||.+.++.+.-..+.+.|+
T Consensus       154 ~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~~--~k~~~~~s~~~l~~agv~~~q~i~~~~~~~i~~~  219 (230)
T KOG3127|consen  154 SLYVTLCPCNECAKLIIQAGIKEVYYSSSYYV--DKYADRASKRMLDLAGVTLRQFIPPESFIVIEFD  219 (230)
T ss_pred             eEEEeecchHHHHHHHHHhhhhheeecccccc--chHHHHHHHHHHHhcCcceEEeccCCcceeeeec
Confidence            99999999999999999999999999998742  2334568999999999999999877677776664

>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification] Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase Back     alignment and domain information
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
2w4l_A178 Human Dcmp Deaminase Length = 178 2e-50
2hvv_A184 Crystal Structure Of Dcmp Deaminase From Streptococ 3e-12
1vq2_A193 Crystal Structure Of T4-Bacteriophage Deoxycytidyla 8e-09
2b3z_A 373 Crystal Structure Of A Bifunctional Deaminase And R 8e-06
2g6v_A 402 The Crystal Structure Of Ribd From Escherichia Coli 2e-05
2o7p_A 380 The Crystal Structure Of Ribd From Escherichia Coli 3e-05
>pdb|2W4L|A Chain A, Human Dcmp Deaminase Length = 178 Back     alignment and structure 
Iteration: 1

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 121/164 (73%), Gaps = 4/164 (2%)
Query: 64  KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPW 123
           KR  YL W +YFMA+AFLSA+RSKDPN QVGAC+V+ +  I+GIGYNG P GCSDD LPW
Sbjct: 5   KRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPW 64
Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
            + ++  + L+TKYPYVCHAE+NAI+N N     G  +YV +FPCNECAK+IIQ+G+ EV
Sbjct: 65  RRTAE--NKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEV 122
Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFE 227
           I F+  + ++SD A  A+  L +MAGV  RK  P+  +I+I F+
Sbjct: 123 I-FMSDKYHDSDEA-TAARLLFNMAGVTFRKFIPKCSKIVIDFD 164
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus Mutans Length = 184 Back     alignment and structure
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate Deaminase, Mutant R115e Length = 193 Back     alignment and structure
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis Length = 373 Back     alignment and structure
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli Length = 402 Back     alignment and structure
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In Complex With The Oxidised Nadp+ Cofactor In The Active Site Of The Reductase Domain Length = 380 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 2e-82
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 5e-67
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 3e-52
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 9e-13
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 5e-12
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 1e-11
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 2e-11
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 5e-10
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 1e-09
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 1e-09
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 2e-09
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 2e-09
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 2e-09
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 2e-09
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 8e-09
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 Back     alignment and structure
 Score =  242 bits (620), Expect = 2e-82
 Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 4/165 (2%)

Query: 64  KRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPW 123
           KR  YL W +YFMA+AFLSA+RSKDPN QVGAC+V+ +  I+GIGYNG P GCSDD LPW
Sbjct: 5   KRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPW 64

Query: 124 AKKSKIGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEV 183
            + ++  + L+TKYPYVCHAE+NAI+N N     G  +YV +FPCNECAK+IIQ+G+ EV
Sbjct: 65  RRTAE--NKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEV 122

Query: 184 IYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQILITFEE 228
           I+  +K  ++ +    A+  L +MAGV  RK  P+  +I+I F+ 
Sbjct: 123 IFMSDKYHDSDE--ATAARLLFNMAGVTFRKFIPKCSKIVIDFDS 165
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Length = 278 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 100.0
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 100.0
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 100.0
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 99.97
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 99.97
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 99.97
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 99.96
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 99.96
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 99.96
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 99.96
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 99.96
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 99.95
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 99.95
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 99.95
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 99.94
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 99.91
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.79
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 99.58
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 99.48
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 99.44
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 99.31
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 99.16
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 99.15
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 99.14
1ctt_A 294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 98.89
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 98.86
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 98.79
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 98.67
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 98.52
4eg2_A 298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 98.23
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 97.89
3v4k_A203 DNA DC->DU-editing enzyme apobec-3G; antiviral def 97.38
3vow_A190 Probable DNA DC->DU-editing enzyme apobec-3C; anti 97.11
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.9e-42  Score=286.75  Aligned_cols=163  Identities=56%  Similarity=1.042  Sum_probs=143.0

Q ss_pred             ccccCCCChHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccccccCCCCCCCcCCCCC
Q 027047           62 PSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSKIGDPLETKYPYVC  141 (229)
Q Consensus        62 ~~~~~~~~~~de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~~~~~~~pl~~~~~~~~  141 (229)
                      +.|++.+++||++||++|+++|++|.++++|||||||++||+||++|+|+.|.+|.+..|||.+.  .++|++.+|.++.
T Consensus         3 ~~~~~~~~~~d~~~M~~A~~~A~~s~~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~--~g~p~~~~~~~t~   80 (178)
T 2w4l_A            3 CKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT--AENKLDTKYPYVC   80 (178)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHTTCCCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSC--CSSGGGSSTTTCB
T ss_pred             CcccccccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccc--cCCccccccCCcC
Confidence            34788999999999999999999999999999999998899999999999999999999999763  4788888999999


Q ss_pred             cHHHHHHHHccccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhhhhHHHHHHHHCCCeEEEechhHHH
Q 027047          142 HAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRKHQPQMRQ  221 (229)
Q Consensus       142 HAE~~Ai~~a~~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~~~~~~~~L~~~GV~v~~~~~~~~~  221 (229)
                      |||++||.++.+..+.|++||||+|||.||+++|+++||++|||+..++.+ +.. ...++++|+++||+|+++.++..+
T Consensus        81 HAE~~AI~~a~g~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d-~~~-~~~~~~~L~~aGI~V~~~~~~~~~  158 (178)
T 2w4l_A           81 HAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHD-SDE-ATAARLLFNMAGVTFRKFIPKCSK  158 (178)
T ss_dssp             CHHHHHHHC----CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTT-SHH-HHHHHHHHHHHTCEEEECCCSCSE
T ss_pred             CHHHHHHHHhcCCCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCC-Ccc-hHHHHHHHHHCCCEEEEccHHHHH
Confidence            999999999877789999999999999999999999999999999874322 221 235799999999999999999899


Q ss_pred             Hhhhccc
Q 027047          222 ILITFEE  228 (229)
Q Consensus       222 ~~~~~~~  228 (229)
                      +.+.|.+
T Consensus       159 l~~~f~~  165 (178)
T 2w4l_A          159 IVIDFDS  165 (178)
T ss_dssp             EEEEGGG
T ss_pred             HHHHHHh
Confidence            9998875
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Back     alignment and structure
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 229
d1vq2a_193 c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop 4e-27
d1p6oa_156 c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S 9e-10
d1wwra1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 3e-08
d2a8na1130 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de 4e-08
d2g84a1189 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr 3e-06
d1wkqa_158 c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub 5e-06
d1z3aa1156 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA 6e-04
d2b3za2145 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein 0.001
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Deoxycytidylate deaminase
species: Bacteriophage T4 [TaxId: 10665]

 Score =  100 bits (250), Expect = 4e-27
 Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 40/177 (22%)

Query: 72  DDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAK------ 125
               + IA+L ++ SK  + +VGA +  ++G I+  GYNG P G  +     A+      
Sbjct: 3   ASTVLQIAYLVSQESKCCSWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLN 61

Query: 126 --------------------------KSKIGDPLETKYPYVCHAEVNAILNTN--HASAA 157
                                     K       E       HAE+NAIL      +S  
Sbjct: 62  KPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIE 121

Query: 158 GQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVAYIASHKLLSMAGVKVRK 214
           G  +YVT+ PC +CAK I QSG+ +++Y      N           +L  AG++V  
Sbjct: 122 GATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP-----GWDDILRNAGIEVFN 173
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.98
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 99.98
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 99.96
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 99.96
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 99.96
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 99.96
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 99.96
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 99.96
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 99.95
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 99.95
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 98.91
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 98.87
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 98.84
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 98.69
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 98.64
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 98.52
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 98.37
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Deoxycytidylate deaminase
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.98  E-value=2.2e-33  Score=235.03  Aligned_cols=139  Identities=33%  Similarity=0.438  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceEEEEEecCCeEEEEeecCCCCCCCCCCCcccc--------------cccCC-------
Q 027047           72 DDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAK--------------KSKIG-------  130 (229)
Q Consensus        72 de~~M~~A~~~A~~S~~~~~~VGAvIV~~dg~II~~G~N~~p~~~~~~~~~~~~--------------~~~~~-------  130 (229)
                      ++.||++|+.+|++|+|++++||||||+ ||+||++|||++|.|..+....+..              .....       
T Consensus         3 ~~~~M~~A~~~A~rS~c~~~~VGAVIV~-~~~IIs~G~Ng~p~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (193)
T d1vq2a_           3 ASTVLQIAYLVSQESKCCSWKVGAVIEK-NGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGST   81 (193)
T ss_dssp             HHHHHHHHHHHHTTCCCSSBCCEEEEEE-TTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-------------------
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEE-CCEEEEEeecCCcCCCCccccchhhhhhhcccchhhhhhcccccccccccc
Confidence            5789999999999999999999999995 9999999999999883321000000              00000       


Q ss_pred             -----------CCCCCcCCCCCcHHHHHHHHcc--ccCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEEeecCCCCchhh
Q 027047          131 -----------DPLETKYPYVCHAEVNAILNTN--HASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLNNSDVA  197 (229)
Q Consensus       131 -----------~pl~~~~~~~~HAE~~Ai~~a~--~~~~~g~tLYvT~ePC~~Ca~ai~~sGI~rVvy~~~~~~~~~~~~  197 (229)
                                 .....++.+++|||++||.++.  +..+.|++||+|+|||.||+++|+++||++|||+.+++...    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~HAE~nai~~a~~~~~~~~~~~ly~t~~PC~~Ca~~i~~~gI~~V~~~~~~~~~~----  157 (193)
T d1vq2a_          82 DRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK----  157 (193)
T ss_dssp             -CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC----
T ss_pred             cccchhhccccccccccCCCCcCHHHHHHHHHHhcCCCCCCceEEecCCCcHHHHHHHHhccCCEEEEEeCCCCcc----
Confidence                       0001134558999999999984  45688999999999999999999999999999998875332    


Q ss_pred             hhHHHHHHHHCCCeEEEec
Q 027047          198 YIASHKLLSMAGVKVRKHQ  216 (229)
Q Consensus       198 ~~~~~~~L~~~GV~v~~~~  216 (229)
                       ..+.++|+++||+|..+.
T Consensus       158 -~~~~~~l~~~gI~v~~i~  175 (193)
T d1vq2a_         158 -PGWDDILRNAGIEVFNVP  175 (193)
T ss_dssp             -TTTTHHHHHTTCEEEECC
T ss_pred             -HHHHHHHHHCCCEEEecC
Confidence             246789999999998764
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure