Citrus Sinensis ID: 027058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MAGTAATVNLSSAPYLLRRSSFTTLSSKPSVLPMRPRSKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA
Secondary Structure (PSIPRED)
cccccEEEEEEccccccccccccccccccccccccccccccEEEEEEccccccccEEEEcccEEEEEEEccccccccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEEEEEEccccEEEEEcccccccEEccHHHHccHHHccccccEEEEEEEccEEEEEEcccEEEEEEEEccccccccccccccccEEEccccEEEccccEEcccEEEEEcccccEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccccHHHcccccccccccccccccEEEEEEcccccccEEEEEcccEEEEEEEEEcccccccHEHHEHHEEcccccEEEEEccccccccccEEEcccEEEEEccccEEEEEcccccHHccccHHHHHHHHHHHHHccEEEEEEEccEEEEEEcccEEEEEEEEccccccccccccccccEEEEccEEEEEEEEEEcccEEEEEcccccEEccc
Coil and Loop (DISEMBL)
MAGTAATvnlssapyllrrssfttlsskpsvlpmrprskfpriyafssndikvgsnievdgapwRVLEFlhvkpgkgaAFVRTKLrnymsgttvERTFRAGItveeadvfketkqftykdgsmfvfmdLTTFEEVrlnetdvgdkkkwlkegmdcnllfwkgkiidfevpiTVQLtvvdvdpglkgdtasggskpatldtgavvnvplfvnigdeilvdtrtgqymtra
Flexible Loop (DISEMBL)
magtaatvnlssapyllrrssfttlsskpsvlpmrprskfpriyafssndikvgsnIEVDGAPWRVLEFLHVKpgkgaafvrtklrnymsgttvertfragitveeadvfketkqftykdgsmfVFMDLTtfeevrlnetdvgdkkkwlkEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDtasggskpatldtgavvnvplfvnigdeilvdtrtgqymtra
Low Complexity Region (SEG)
MAGTAATVNLSSAPYllrrssfttlssKPSVLPMRPRSKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA
Disordered region (IsUnstruct)
***************************************FPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGL************TLDTGAVVNVPLFVNIGDEILVDTRT*******
Disordered Region (DISOPRED)
*********LSSAPYLLRRSS*********************IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA
Disordered Region (DISEMBL)
MAGTAATVNLSSAPYLLRRSSFTTLSSKPSVLPMRPRSKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA
Disordered Region (DISPRO)
**GTAATVNLSSAPYLLRRSSFTTLSSKPSVLPMRPRSKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRT*QYM***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGTAATVNLSSAPYLLRRSSFTTLSSKPSVLPMRPRSKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
B1XKV1	185	Elongation factor P OS=Sy	yes	no	0.799	0.989	0.595	2e-61
B0JHV3	185	Elongation factor P OS=Mi	yes	no	0.799	0.989	0.584	2e-60
Q5N1T5	185	Elongation factor P OS=Sy	yes	no	0.799	0.989	0.573	3e-59
Q54760	185	Elongation factor P OS=Sy	yes	no	0.799	0.989	0.573	3e-59
Q8DJD3	185	Elongation factor P OS=Th	yes	no	0.799	0.989	0.568	3e-58
B7KGU8	185	Elongation factor P OS=Cy	yes	no	0.799	0.989	0.557	7e-58
B2J711	185	Elongation factor P OS=No	yes	no	0.799	0.989	0.573	1e-57
B1WNP3	186	Elongation factor P OS=Cy	yes	no	0.799	0.983	0.557	2e-57
B7JVR7	185	Elongation factor P OS=Cy	yes	no	0.799	0.989	0.551	4e-57
B0C899	185	Elongation factor P OS=Ac	yes	no	0.799	0.989	0.557	4e-57

>sp|B1XKV1|EFP_SYNP2 Elongation factor P OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=efp PE=3 SV=1

 Score =  235 bits (599), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 143/183 (78%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G++IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  +G+ VE+TFRAG TV 
Sbjct: 2   ISSNDFRTGTSIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNAQTGSVVEKTFRAGETVP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           +A + K T Q TYK+G  FVFMD+ T+EEVRL E  +GD+ K+L E M+ N+LFW  ++I
Sbjct: 62  QAILDKRTMQHTYKEGEQFVFMDMETYEEVRLTEAQIGDRVKYLMEEMEVNVLFWNSQVI 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
           D E+P TV L V + DPG+KGDTA+GG+KPA + TGA VNVPLF++IG+ I +DTRT  Y
Sbjct: 122 DVELPNTVVLEVTETDPGVKGDTATGGTKPAIVSTGAQVNVPLFISIGERIKIDTRTDTY 181

Query: 226 MTR 228
           + R
Sbjct: 182 LGR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp|B0JHV3|EFP_MICAN Elongation factor P OS=Microcystis aeruginosa (strain NIES-843) GN=efp PE=3 SV=1

 Score =  232 bits (591), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 139/183 (75%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G+ IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  +G  VERTFRAG T+ 
Sbjct: 2   ISSNDFRSGTTIEIDGSVWRVVEFLHVKPGKGSAFVRTKLKNVQTGNVVERTFRAGETLP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
            A + K T Q TYK+G  FVFMD+ TFEE  L    +GD+ K+LKEGM+ N+LFW  +++
Sbjct: 62  SATIEKRTMQHTYKEGDQFVFMDMETFEEATLTPVQMGDRAKYLKEGMEVNILFWNDQVL 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
           D E+P +V L + D DPG+KGDTA+GG+KPA ++TGA V VPLF++IG+ I VDTR G Y
Sbjct: 122 DIELPTSVILEITDTDPGVKGDTATGGTKPAIVETGAQVMVPLFISIGERIKVDTRDGSY 181

Query: 226 MTR 228
           + R
Sbjct: 182 LGR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

>sp|Q5N1T5|EFP_SYNP6 Elongation factor P OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=efp PE=3 SV=1

 Score =  228 bits (581), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 142/183 (77%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G+ IE+DGA WRV+EFLHVKPGKG+AFVRTKL+N  +G  VE+TFRAG TV 
Sbjct: 2   ISSNDFRTGTTIEIDGAVWRVVEFLHVKPGKGSAFVRTKLKNAKTGNVVEKTFRAGETVP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           +A + K T Q+TYKDG  FVFMD+ T+EE RL    +GD+ K+LKEGM+ N++ W G++I
Sbjct: 62  QAVLEKSTLQYTYKDGDDFVFMDMETYEEGRLTAATIGDRVKYLKEGMEANVITWNGQVI 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
           + E+P +V L V++ DPG+KGDTA+GG+KPA ++TGA V VPLF+++G+ I +DTR   Y
Sbjct: 122 EVELPNSVVLEVIETDPGVKGDTATGGTKPAKVETGAQVMVPLFISVGERIKIDTRNDSY 181

Query: 226 MTR 228
           + R
Sbjct: 182 LGR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

>sp|Q54760|EFP_SYNE7 Elongation factor P OS=Synechococcus elongatus (strain PCC 7942) GN=efp PE=3 SV=1

 Score =  228 bits (581), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 142/183 (77%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G+ IE+DGA WRV+EFLHVKPGKG+AFVRTKL+N  +G  VE+TFRAG TV 
Sbjct: 2   ISSNDFRTGTTIEIDGAVWRVVEFLHVKPGKGSAFVRTKLKNAKTGNVVEKTFRAGETVP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           +A + K T Q+TYKDG  FVFMD+ T+EE RL    +GD+ K+LKEGM+ N++ W G++I
Sbjct: 62  QAVLEKSTLQYTYKDGDDFVFMDMETYEEGRLTAATIGDRVKYLKEGMEANVITWNGQVI 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
           + E+P +V L V++ DPG+KGDTA+GG+KPA ++TGA V VPLF+++G+ I +DTR   Y
Sbjct: 122 EVELPNSVVLEVIETDPGVKGDTATGGTKPAKVETGAQVMVPLFISVGERIKIDTRNDSY 181

Query: 226 MTR 228
           + R
Sbjct: 182 LGR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|Q8DJD3|EFP_THEEB Elongation factor P OS=Thermosynechococcus elongatus (strain BP-1) GN=efp PE=3 SV=1

 Score =  224 bits (572), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/183 (56%), Positives = 140/183 (76%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G +IE+DGA WRV+EFLHVKPGKG+AFVRTKL+N  +G  +ERTFRAG TV 
Sbjct: 2   ISSNDFRPGVSIELDGAVWRVVEFLHVKPGKGSAFVRTKLKNVQTGNVIERTFRAGETVP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           +A + K T Q TYKDG  +VFMD+ ++EE RL    VGD+ K+LKEGM+ N++ W  +++
Sbjct: 62  QATLEKRTMQHTYKDGEDYVFMDMESYEEARLTPAQVGDRAKYLKEGMEVNIVKWGEQVL 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
           + E+P +V L VV  DPG+KGDTA+GGSKPA ++TGA V VPLF+++G+ I +DTR+  Y
Sbjct: 122 EVELPNSVVLEVVQTDPGVKGDTATGGSKPAIVETGAQVMVPLFISVGERIRIDTRSDTY 181

Query: 226 MTR 228
           + R
Sbjct: 182 LGR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|B7KGU8|EFP_CYAP7 Elongation factor P OS=Cyanothece sp. (strain PCC 7424) GN=efp PE=3 SV=1

 Score =  223 bits (569), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 102/183 (55%), Positives = 139/183 (75%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G +IE++G+ W+V+EFLHVKPGKG+AFVRT L+N  +G  +ERTFRAG TV 
Sbjct: 2   ISSNDFRPGVSIELEGSIWKVVEFLHVKPGKGSAFVRTTLKNVQTGKVLERTFRAGETVP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           +A + K T Q TYK+G  FVFMD+ T+EE RLN   +GD  K++KE M+ N+L+W  +++
Sbjct: 62  QATIEKRTMQHTYKEGEQFVFMDMETYEEARLNPEQLGDGAKYIKENMEVNVLYWGEQVL 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
           + E+P +V L V D DPG+KGDTA+GGSKPA ++TGA + VPLF++IG+ I VDTR G Y
Sbjct: 122 NIELPTSVILEVTDTDPGVKGDTATGGSKPAIVETGAQIMVPLFISIGERIKVDTRDGSY 181

Query: 226 MTR 228
           + R
Sbjct: 182 LGR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|B2J711|EFP_NOSP7 Elongation factor P OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=efp PE=3 SV=1

 Score =  222 bits (566), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 141/183 (77%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G +I +DG+ WRVLEFLHVKPGKG+AFVRTKL+N  SG+ +E+TFRAG TV 
Sbjct: 2   ISSNDFRPGVSIVLDGSVWRVLEFLHVKPGKGSAFVRTKLKNVQSGSVMEKTFRAGETVP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           +A + K T Q TYK+G  FVFMD+ T+EE RL  T +GD+ K+LKEGM+  ++ W  +++
Sbjct: 62  QATLEKSTMQHTYKEGDEFVFMDMETYEEGRLTRTQIGDRVKYLKEGMEAEVIKWGDQVL 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
             E+P +V L +V  DPGLKGDTA+GGSKPATL+TGA+V VPLF++ G+ I VDT+  +Y
Sbjct: 122 GVELPKSVVLEIVQTDPGLKGDTATGGSKPATLETGAIVMVPLFISQGERIKVDTQEDKY 181

Query: 226 MTR 228
           ++R
Sbjct: 182 ISR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|B1WNP3|EFP_CYAA5 Elongation factor P OS=Cyanothece sp. (strain ATCC 51142) GN=efp PE=3 SV=1

 Score =  222 bits (565), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/183 (55%), Positives = 141/183 (77%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G++IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  +G+ VERTFRAG TV 
Sbjct: 2   ISSNDFRTGTSIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNAQTGSVVERTFRAGETVP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           +A + K T Q TYK+G  +VFMD+ T+EEVRL+   +G    ++KE M+ ++LFW   ++
Sbjct: 62  QATLEKRTMQHTYKEGEQYVFMDMETYEEVRLSPEQMGTTVNYIKEEMEADVLFWNDTVL 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
           + ++P +V L V D DPG+KGDTA+GG+KPA ++TGA V VPLF++IG++I VDTR G Y
Sbjct: 122 EVQLPTSVILEVTDTDPGVKGDTATGGTKPAIVETGAQVMVPLFISIGEKIKVDTRDGSY 181

Query: 226 MTR 228
           + R
Sbjct: 182 LGR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

>sp|B7JVR7|EFP_CYAP8 Elongation factor P OS=Cyanothece sp. (strain PCC 8801) GN=efp PE=3 SV=1

 Score =  221 bits (562), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/183 (55%), Positives = 140/183 (76%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G+ IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  +G+ VE+TFRAG TV 
Sbjct: 2   ISSNDFRTGTTIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNAQTGSVVEKTFRAGETVP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           +A + K T Q TYKDG  +VFMD+ T+EE RLN   +G    +LKE M+ +++FW  +++
Sbjct: 62  QATLEKRTMQHTYKDGDQYVFMDMETYEEARLNPEQMGTSVNYLKEEMEADIVFWGDQVL 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
           + ++P +V L V + DPG+KGDTA+GG+KPA ++TGA V VPLF++IG++I VDTR G Y
Sbjct: 122 EVQLPTSVILEVTETDPGVKGDTATGGTKPAIVETGAQVMVPLFISIGEKIKVDTRDGSY 181

Query: 226 MTR 228
           + R
Sbjct: 182 LGR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

>sp|B0C899|EFP_ACAM1 Elongation factor P OS=Acaryochloris marina (strain MBIC 11017) GN=efp PE=3 SV=1

 Score =  221 bits (562), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 102/183 (55%), Positives = 138/183 (75%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            SSND + G +IE+DG+ WRV+EFLHVKPGKG+AFVRTKL+N  SG+ VERTFRAG TV 
Sbjct: 2   ISSNDFRTGVSIELDGSVWRVVEFLHVKPGKGSAFVRTKLKNVQSGSVVERTFRAGETVP 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           +A++ K   Q TYKDG  FVFMD+ ++EE  L++  +G + K+LKEGM+ N++ W  +++
Sbjct: 62  QANLEKRVMQHTYKDGDQFVFMDMESYEEASLSQEQIGTRVKYLKEGMEVNVIQWGEQVL 121

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
           + E+P +V L V   DPG+KGDTA+GGSKPA ++TGA V VPLF++ G+ I VDTR   Y
Sbjct: 122 EVELPTSVVLEVTQTDPGVKGDTATGGSKPAIVETGAQVMVPLFISEGERIKVDTRNDSY 181

Query: 226 MTR 228
           + R
Sbjct: 182 LGR 184

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
351720818	233	uncharacterized protein LOC100500109 [Gl	1.0	0.982	0.708	4e-94
225439691	236	PREDICTED: elongation factor P [Vitis vi	0.868	0.843	0.775	2e-92
224139364	185	predicted protein [Populus trichocarpa]	0.807	1.0	0.870	3e-91
449439803	235	PREDICTED: elongation factor P-like [Cuc	0.995	0.970	0.707	5e-91
18398225	236	elongation factor EF-P [Arabidopsis thal	1.0	0.970	0.694	3e-89
351734458	237	uncharacterized protein LOC100306051 [Gl	0.842	0.814	0.782	3e-89
388518237	229	unknown [Lotus japonicus]	0.868	0.868	0.767	4e-89
297833622	235	elongation factor P (EF-P) family protei	1.0	0.974	0.685	4e-88
357157583	226	PREDICTED: elongation factor P-like [Bra	0.934	0.946	0.7	5e-88
326522678	236	predicted protein [Hordeum vulgare subsp	0.943	0.915	0.686	3e-87

>gi|351720818|ref|NP_001236933.1| uncharacterized protein LOC100500109 [Glycine max] gi|255629257|gb|ACU14973.1| unknown [Glycine max]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 165/233 (70%), Positives = 196/233 (84%), Gaps = 4/233 (1%)

Query: 1   MAGTAATVNLSSAPYLLRRSSFTTLSSKPSVLPMR----PRSKFPRIYAFSSNDIKVGSN 56
           M    AT+ LS + +    S+F+  SS PS LPMR     + +F RIYA +SNDIKVG+N
Sbjct: 1   MVAGTATLKLSLSAFSSPMSNFSASSSFPSRLPMRTPSSSKPRFLRIYALTSNDIKVGTN 60

Query: 57  IEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQF 116
           +EVDGAPWRVLEFLHVKPGK AAFVRTK++NY++G TVE+TFRAG ++E+ADVFKETKQF
Sbjct: 61  LEVDGAPWRVLEFLHVKPGKDAAFVRTKMKNYITGNTVEKTFRAGSSIEQADVFKETKQF 120

Query: 117 TYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLT 176
           TYKDG+ FVFMDL T+EE RL E ++GD+ KWLKEGMDCNLL W GK+ID E+PIT++L 
Sbjct: 121 TYKDGAQFVFMDLNTYEEFRLGEKEIGDRTKWLKEGMDCNLLLWNGKVIDVELPITIKLA 180

Query: 177 VVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA 229
           VVDVDPGLKGDTA GG+KPATLDTGAVVNVPLFVN+GDEILVD+RTGQYM+RA
Sbjct: 181 VVDVDPGLKGDTAQGGTKPATLDTGAVVNVPLFVNVGDEILVDSRTGQYMSRA 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439691|ref|XP_002267558.1| PREDICTED: elongation factor P [Vitis vinifera] gi|297735541|emb|CBI18035.3| unnamed protein product [Vitis vinifera]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/205 (77%), Positives = 189/205 (92%), Gaps = 6/205 (2%)

Query: 31  VLPMRP------RSKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTK 84
           VLPMR       RS+F +I AF+SNDIKVGS+IEVDGAPW+VLEFLHVKPGKGAAFVRTK
Sbjct: 32  VLPMRCAPPRPYRSRFSKILAFTSNDIKVGSSIEVDGAPWKVLEFLHVKPGKGAAFVRTK 91

Query: 85  LRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGD 144
           +RNY++G TV++TFRAG +++EA+V+KETKQ+TYKDG+ FVFMDL+TFEE+RLNE+DVG+
Sbjct: 92  MRNYVTGNTVDKTFRAGCSIDEANVYKETKQYTYKDGAQFVFMDLSTFEEIRLNESDVGE 151

Query: 145 KKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVV 204
           + KWLKEGMDCN+LFW GKIIDFE+PIT++LTVVDVDPG+KGDTA GGSKPATLDTGAVV
Sbjct: 152 RTKWLKEGMDCNVLFWNGKIIDFELPITIKLTVVDVDPGIKGDTAQGGSKPATLDTGAVV 211

Query: 205 NVPLFVNIGDEILVDTRTGQYMTRA 229
           NVPLFVNIGD+ILVDTRTG+Y +RA
Sbjct: 212 NVPLFVNIGDQILVDTRTGEYRSRA 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139364|ref|XP_002323076.1| predicted protein [Populus trichocarpa] gi|222867706|gb|EEF04837.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 161/185 (87%), Positives = 173/185 (93%)

Query: 45  AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITV 104
           A SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTK+RNY++G TV++TFRAG T+
Sbjct: 1   ALSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKMRNYVTGNTVDKTFRAGSTI 60

Query: 105 EEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKI 164
           EEA+VFKE KQFTYKDG  FVFMDL+TFEE RLNE DVGDK KWLKEGMDCNLLFW GK+
Sbjct: 61  EEANVFKEAKQFTYKDGVQFVFMDLSTFEEYRLNEADVGDKTKWLKEGMDCNLLFWNGKV 120

Query: 165 IDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQ 224
           IDFE+PITVQLTVVDVDPGLKGDTA GG+KPATLDTGAVVNVPLFVNIG EILVDTRTGQ
Sbjct: 121 IDFELPITVQLTVVDVDPGLKGDTAQGGTKPATLDTGAVVNVPLFVNIGAEILVDTRTGQ 180

Query: 225 YMTRA 229
           YM+RA
Sbjct: 181 YMSRA 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439803|ref|XP_004137675.1| PREDICTED: elongation factor P-like [Cucumis sativus] gi|449523916|ref|XP_004168969.1| PREDICTED: elongation factor P-like [Cucumis sativus]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 167/236 (70%), Positives = 194/236 (82%), Gaps = 8/236 (3%)

Query: 1   MAGTAATVNLSSAPYLLRRSSFTTLSSKPSVLPMRPRSKFP-------RIYAFSSNDIKV 53
           MAGT    N SSA   L R+S +  S    + P+  RS  P       RIYA +SNDIKV
Sbjct: 1   MAGTL-LCNASSASAFLARTSSSKTSLSLPLKPLALRSFSPSSRTGFFRIYALTSNDIKV 59

Query: 54  GSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKET 113
           G+NIEVDGAPWRVLEFLHVKPGKGAAFVRTK+RNY++G TVE+TFRAG ++EEA+V+KE 
Sbjct: 60  GTNIEVDGAPWRVLEFLHVKPGKGAAFVRTKIRNYVTGNTVEKTFRAGSSLEEANVYKEV 119

Query: 114 KQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITV 173
           KQFTYKDGS FVFMDL T+EE+RLN  DVGD+ KWLKEGMDC +LFW GK+IDFEVPIT+
Sbjct: 120 KQFTYKDGSQFVFMDLNTYEEIRLNAADVGDRTKWLKEGMDCIVLFWNGKVIDFEVPITI 179

Query: 174 QLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA 229
           QLTVVDVDPGLKGDTA GGSKPATL+TGAVV+VPLF+N+GD I++DTRTGQY +RA
Sbjct: 180 QLTVVDVDPGLKGDTAQGGSKPATLETGAVVSVPLFINVGDSIVIDTRTGQYTSRA 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398225|ref|NP_566333.1| elongation factor EF-P [Arabidopsis thaliana] gi|17380806|gb|AAL36090.1| putative elongation factor P (EF-P) [Arabidopsis thaliana] gi|21436359|gb|AAM51349.1| putative elongation factor P (EF-P) [Arabidopsis thaliana] gi|21592331|gb|AAM64282.1| putative elongation factor P (EF-P) [Arabidopsis thaliana] gi|332641151|gb|AEE74672.1| elongation factor EF-P [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/236 (69%), Positives = 199/236 (84%), Gaps = 7/236 (2%)

Query: 1   MAGTAA-TVNLSSAPYLLRRSSFTTLSSKPSV-LP---MRPRS-KFPRIY-AFSSNDIKV 53
           MAG A  +V+ SS P L    S  + SS   + LP   + PR+ +FPRI+ + S+NDIK 
Sbjct: 1   MAGRAIFSVSCSSTPSLCIPYSTASFSSMNRLALPAVRISPRTNRFPRIHCSMSANDIKA 60

Query: 54  GSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKET 113
           G+NIEVDGAPWRVLEFLHVKPGKGAAFVRTK+RNY++G+TVERTFRAGI+VEEA+++KET
Sbjct: 61  GTNIEVDGAPWRVLEFLHVKPGKGAAFVRTKIRNYVNGSTVERTFRAGISVEEANIYKET 120

Query: 114 KQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITV 173
           KQFTYKDGS FVFMDLTT+EE RLNE+D+G+K KWLKEGMDC LL+WK K+IDF++PITV
Sbjct: 121 KQFTYKDGSQFVFMDLTTYEETRLNESDMGEKTKWLKEGMDCILLYWKDKVIDFDLPITV 180

Query: 174 QLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA 229
           +L VVDVDPGL+GDT  GGSKPAT++TGA+V VPLF+N+G+EI VDTRTG YM RA
Sbjct: 181 KLKVVDVDPGLRGDTVQGGSKPATMETGAIVAVPLFINVGEEIFVDTRTGAYMNRA 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734458|ref|NP_001236791.1| uncharacterized protein LOC100306051 [Glycine max] gi|255627395|gb|ACU14042.1| unknown [Glycine max]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 151/193 (78%), Positives = 176/193 (91%)

Query: 37  RSKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVER 96
           + +F RIYA +SNDIKVG+N+EVDGAPWRVLEFLHVKPGKGAAFVRTK++NY++G TVE+
Sbjct: 45  KPRFLRIYALTSNDIKVGTNLEVDGAPWRVLEFLHVKPGKGAAFVRTKMKNYITGNTVEK 104

Query: 97  TFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCN 156
           TFRAG ++E+ADVFKETKQFTYKDG  FVFMDL T+EE RL E ++GD+ KWLKEGMDCN
Sbjct: 105 TFRAGSSIEQADVFKETKQFTYKDGVQFVFMDLNTYEEFRLGEKEIGDRTKWLKEGMDCN 164

Query: 157 LLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEI 216
           LL W GK+ID E+PIT++LTVVDVDPGLKGDTA GG+KPATLDT AVVNVPLFVN+GDEI
Sbjct: 165 LLLWNGKVIDVELPITIKLTVVDVDPGLKGDTAQGGTKPATLDTNAVVNVPLFVNVGDEI 224

Query: 217 LVDTRTGQYMTRA 229
           LVD+RTGQYM+RA
Sbjct: 225 LVDSRTGQYMSRA 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518237|gb|AFK47180.1| unknown [Lotus japonicus]

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 155/202 (76%), Positives = 180/202 (89%), Gaps = 3/202 (1%)

Query: 31  VLPMRPRSKFPR---IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRN 87
           +LPMR  S  PR   IYA +SNDIKVGSN+EVDGAPWRVLEFLHVKPGKGAAFVRTKL+N
Sbjct: 28  LLPMRNPSSKPRFFKIYALTSNDIKVGSNVEVDGAPWRVLEFLHVKPGKGAAFVRTKLKN 87

Query: 88  YMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKK 147
           Y++G TV++TFRAG ++E+AD+ KETKQFTYKDGS FVFMDL ++EEVRL+E D+GD+ K
Sbjct: 88  YLTGNTVDKTFRAGSSIEQADILKETKQFTYKDGSQFVFMDLNSYEEVRLDEKDIGDRTK 147

Query: 148 WLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVP 207
           WLKEGMDC++L W GK+ID ++PITV+LTVVDVDPGLKGDTA GGSKP TLDTGAVVNVP
Sbjct: 148 WLKEGMDCSILLWNGKVIDIDLPITVKLTVVDVDPGLKGDTAQGGSKPTTLDTGAVVNVP 207

Query: 208 LFVNIGDEILVDTRTGQYMTRA 229
           LFVN+GDEILVDTR G YM+RA
Sbjct: 208 LFVNVGDEILVDTRNGVYMSRA 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833622|ref|XP_002884693.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata] gi|297330533|gb|EFH60952.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 161/235 (68%), Positives = 196/235 (83%), Gaps = 6/235 (2%)

Query: 1   MAGTAATVNLSSAPYLLRRSSFTTLSSKPSV-LP---MRPRS-KFPRIY-AFSSNDIKVG 54
           MAG A     S +P L    S  + SS   + LP   + PR+ +FPRI+ + S+NDIK G
Sbjct: 1   MAGRAIFSVSSCSPSLCIPYSTASFSSMNRLALPAVRISPRTNRFPRIHCSLSANDIKAG 60

Query: 55  SNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETK 114
           +NIEVDGAPWRVLEFLHVKPGKGAAFVRTK+RNY++G+TVERTFRAGI+VEEA+++KETK
Sbjct: 61  TNIEVDGAPWRVLEFLHVKPGKGAAFVRTKIRNYVNGSTVERTFRAGISVEEANIYKETK 120

Query: 115 QFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQ 174
           QFTYKDGS FVFMDLTT+EE RLNE+D+G+K KWLKEGM+C LL+WK K+IDF++PITV+
Sbjct: 121 QFTYKDGSQFVFMDLTTYEETRLNESDMGEKTKWLKEGMECILLYWKDKVIDFDLPITVK 180

Query: 175 LTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA 229
           L VVDVDPGL+GDT  GGSKPAT++TGA+V VPLF+N+G+EI VDTRTG YM RA
Sbjct: 181 LKVVDVDPGLRGDTVQGGSKPATMETGAIVAVPLFINVGEEIFVDTRTGAYMNRA 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357157583|ref|XP_003577846.1| PREDICTED: elongation factor P-like [Brachypodium distachyon]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 154/220 (70%), Positives = 190/220 (86%), Gaps = 6/220 (2%)

Query: 11  SSAPYLLRRS-SFTTLSSKPSVLPMRPRSKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEF 69
           +S+ + LRR  SF    ++P    +R RS+  R+YA SSNDIKVG N+EVDGAPW++LEF
Sbjct: 12  TSSSFDLRRPPSFCLAGTRP----LRLRSRLARVYALSSNDIKVGLNLEVDGAPWKILEF 67

Query: 70  LHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDL 129
           LHVKPGKGAAFVRTK+RNY+SG TVE+TFRAG T++EA + KETKQFTYKDG  FVFMDL
Sbjct: 68  LHVKPGKGAAFVRTKMRNYVSGNTVEKTFRAGSTIQEASISKETKQFTYKDGPQFVFMDL 127

Query: 130 TTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTA 189
           TTFEE RLNE+DVGDK+KWLKEGMDCNLL+W G+IIDF++PITV+LTV + DPG +GD+A
Sbjct: 128 TTFEESRLNESDVGDKQKWLKEGMDCNLLYWNGRIIDFDLPITVRLTVTETDPG-QGDSA 186

Query: 190 SGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA 229
            GG+KPATL+TGAVVNVP FV++GD++L+D+RTGQYM+RA
Sbjct: 187 QGGTKPATLETGAVVNVPSFVDVGDDVLIDSRTGQYMSRA 226

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326522678|dbj|BAJ88385.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 151/220 (68%), Positives = 192/220 (87%), Gaps = 4/220 (1%)

Query: 11  SSAPYLLRRSSFTTLSSKP-SVLPMRPRSKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEF 69
           SS+ + L+R      +++P S+ P+R  S+F R+YA SSNDIKVG N+EVDGAPW++LEF
Sbjct: 20  SSSLFDLQRPPSCLAAARPLSLAPLR--SRFTRLYALSSNDIKVGFNLEVDGAPWKILEF 77

Query: 70  LHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFVFMDL 129
           LHVKPGKGAAFVRTK+RNY++G TVE+TFRAG T++EA + KETKQFTYKDGS FVFMDL
Sbjct: 78  LHVKPGKGAAFVRTKMRNYITGNTVEKTFRAGSTIQEASISKETKQFTYKDGSQFVFMDL 137

Query: 130 TTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTA 189
           T+FEE RLNE+DVGD++KWLKEGMDC LL+W G+IIDF++PITV+LTV + DPG +GD+A
Sbjct: 138 TSFEESRLNESDVGDRQKWLKEGMDCTLLYWNGRIIDFDLPITVRLTVTETDPG-QGDSA 196

Query: 190 SGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA 229
            GG+KPATL+TGAVVNVP FV++GD++L+D+RTGQYM+RA
Sbjct: 197 QGGTKPATLETGAVVNVPSFVDVGDDVLIDSRTGQYMSRA 236

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2077888	236	AT3G08740 [Arabidopsis thalian	0.995	0.966	0.679	1.9e-83
TIGR_CMR|CHY_1872	185	CHY_1872 "translation elongati	0.794	0.983	0.510	8.8e-47
TIGR_CMR|BA_4421	185	BA_4421 "translation elongatio	0.799	0.989	0.475	1.2e-44
UNIPROTKB|P64034	187	efp "Elongation factor P" [Myc	0.781	0.957	0.497	1e-43
TIGR_CMR|CJE_0655	189	CJE_0655 "translation elongati	0.807	0.978	0.454	7.3e-43
TIGR_CMR|CPS_0972	191	CPS_0972 "translation elongati	0.803	0.963	0.478	1.9e-42
UNIPROTKB|P0A6N4	188	efp "protein chain elongation	0.799	0.973	0.480	8.4e-42
UNIPROTKB|Q9KNS1	188	efp "Elongation factor P" [Vib	0.794	0.968	0.461	7.8e-39
TIGR_CMR|VC_2660	188	VC_2660 "elongation factor P"	0.794	0.968	0.461	7.8e-39
TIGR_CMR|CBU_1816	188	CBU_1816 "translation elongati	0.799	0.973	0.437	3.4e-38

TAIR|locus:2077888 AT3G08740 [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 161/237 (67%), Positives = 195/237 (82%)

Query:     1 MAGTAA-TVNLSSAP-----YXXXXXXXXXXXXKPSVLPMRPRS-KFPRIY-AFSSNDIK 52
             MAG A  +V+ SS P     Y             P+V  + PR+ +FPRI+ + S+NDIK
Sbjct:     1 MAGRAIFSVSCSSTPSLCIPYSTASFSSMNRLALPAVR-ISPRTNRFPRIHCSMSANDIK 59

Query:    53 VGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKE 112
              G+NIEVDGAPWRVLEFLHVKPGKGAAFVRTK+RNY++G+TVERTFRAGI+VEEA+++KE
Sbjct:    60 AGTNIEVDGAPWRVLEFLHVKPGKGAAFVRTKIRNYVNGSTVERTFRAGISVEEANIYKE 119

Query:   113 TKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPIT 172
             TKQFTYKDGS FVFMDLTT+EE RLNE+D+G+K KWLKEGMDC LL+WK K+IDF++PIT
Sbjct:   120 TKQFTYKDGSQFVFMDLTTYEETRLNESDMGEKTKWLKEGMDCILLYWKDKVIDFDLPIT 179

Query:   173 VQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA 229
             V+L VVDVDPGL+GDT  GGSKPAT++TGA+V VPLF+N+G+EI VDTRTG YM RA
Sbjct:   180 VKLKVVDVDPGLRGDTVQGGSKPATMETGAIVAVPLFINVGEEIFVDTRTGAYMNRA 236

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0043043 "peptide biosynthetic process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TIGR_CMR|CHY_1872 CHY_1872 "translation elongation factor P" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 93/182 (51%), Positives = 127/182 (69%)

Query:    47 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
             S+ND + G  IE+DG  ++V+EF HVKPGKG+ FVR+KLRN M+G  +E+TF AG  V +
Sbjct:     3 STNDFRTGLTIELDGEVYQVIEFQHVKPGKGSPFVRSKLRNLMTGAVIEKTFNAGEKVPK 62

Query:   107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
             A V +   Q+ Y DG  F  MD+ T+++  L +   GD   ++KE  +  +LF+K K+I 
Sbjct:    63 AHVDRREVQYLYNDGDNFYCMDMETYDQFPLTKEQFGDAINYVKENTNLWVLFFKDKVIG 122

Query:   167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
              E+P  V+L V+D  PG+KGDTASGGSKPATL+TG VV VP FV +GD + +DTRTGQY+
Sbjct:   123 VELPNFVELKVIDTPPGIKGDTASGGSKPATLETGYVVQVPFFVEVGDVLQIDTRTGQYI 182

Query:   227 TR 228
              R
Sbjct:   183 KR 184

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|BA_4421 BA_4421 "translation elongation factor P" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 87/183 (47%), Positives = 129/183 (70%)

Query:    47 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
             S ND + G  I VD   W+VL+F HVKPGKGAAFVR+KLRN  +G+  E+TFRAG  VE+
Sbjct:     3 SVNDFRTGLTIAVDNGLWQVLDFQHVKPGKGAAFVRSKLRNLRTGSVQEKTFRAGEKVEK 62

Query:   107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
             A +     Q+ Y  G   VFMD  T+E++ L E  +  + K+LKE M+ +++ ++G+++ 
Sbjct:    63 AHIENRRMQYLYASGEAHVFMDNGTYEQIELGEKQIERELKFLKENMEVSIMTYQGEVLG 122

Query:   167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
              E+P TV+L V + +PG+KGDTAS  +KPATL+TG VV VP+F+N G+ ++++T  G+Y+
Sbjct:   123 VELPNTVELQVTETEPGIKGDTASNVTKPATLETGLVVQVPIFINEGEMLIINTGEGKYV 182

Query:   227 TRA 229
             +RA
Sbjct:   183 SRA 185

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

UNIPROTKB|P64034 efp "Elongation factor P" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 89/179 (49%), Positives = 120/179 (67%)

Query:    50 DIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADV 109
             D K G  + +DG  W + EF HVKPGKG AFVRTKL+N +SG  V++TF AG+ V+ A V
Sbjct:     6 DFKNGLVLVIDGQLWTITEFQHVKPGKGPAFVRTKLKNVLSGKVVDKTFNAGVKVDTATV 65

Query:   110 FKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEV 169
              +    + Y+DGS FVFMD   +E+  L E  VGD  ++L EGM   + F  G  +  E+
Sbjct:    66 DRRDTTYLYRDGSDFVFMDSQDYEQHPLPEALVGDAARFLLEGMPVQVAFHNGVPLYIEL 125

Query:   170 PITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTR 228
             P+TV+L V   +PGL+GD +S G+KPATL TGA +NVPLF+N GD++ VD+R G Y+ R
Sbjct:   126 PVTVELEVTHTEPGLQGDRSSAGTKPATLQTGAQINVPLFINTGDKLKVDSRDGSYLGR 184

GO:0040007 "growth" evidence=IMP

TIGR_CMR|CJE_0655 CJE_0655 "translation elongation factor P" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 84/185 (45%), Positives = 123/185 (66%)

Query:    45 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITV 104
             ++S  D+K G  IE+DG P++++E+ HVKPGKG AFVR K+++++ G  +E+TF AG   
Sbjct:     3 SYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIKSFIDGKVLEKTFHAGDKC 62

Query:   105 EEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKI 164
             E  ++  +T Q+ Y DG    FMD  T+E+V +++ DVG+ KKW+ +GM  ++LF  GK 
Sbjct:    63 EAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGEAKKWMLDGMMVDVLFHNGKA 122

Query:   165 IDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQ 224
             I  EVP  V+L +++  P  KGDT     KPATL+TGAVV +P  V  G+ I VDT  G+
Sbjct:   123 IGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGAVVQIPFHVLEGEVIRVDTVRGE 182

Query:   225 YMTRA 229
             Y+ RA
Sbjct:   183 YIERA 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|CPS_0972 CPS_0972 "translation elongation factor P" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/184 (47%), Positives = 118/184 (64%)

Query:    46 FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
             FS+N  K G  I +DG P  +LE   VKPGKG AF R K+R  +SG  +E+TF++G TVE
Sbjct:     4 FSTNQFKAGLKIMLDGEPCNILENELVKPGKGQAFSRVKIRKLVSGKVLEKTFKSGETVE 63

Query:   106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
              ADV +    + Y DG  + FM+  TFE++   E  +G+  KWL EG  C +  W G  I
Sbjct:    64 GADVMEVELAYLYADGEFWHFMNNETFEQIGAEEKALGETVKWLVEGDICTITLWNGTPI 123

Query:   166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
                    V++ + + DPGLKGDTA  G KPATL TGAVV VPLFV IG+++ +DTR+G+Y
Sbjct:   124 TVTAANFVEIDITETDPGLKGDTAGTGGKPATLATGAVVRVPLFVQIGEKVRIDTRSGEY 183

Query:   226 MTRA 229
             ++RA
Sbjct:   184 VSRA 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

UNIPROTKB|P0A6N4 efp "protein chain elongation factor EF-P" [Escherichia coli K-12 (taxid:83333)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 88/183 (48%), Positives = 116/183 (63%)

Query:    46 FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
             + SND + G  I +DG P+ V     VKPGKG AF R KLR  ++GT VE+TF++  + E
Sbjct:     4 YYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAE 63

Query:   106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
              ADV      + Y DG  + FM+  TFE++  +   +GD  KWL +  +C +  W G+ I
Sbjct:    64 GADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPI 123

Query:   166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
                 P  V+L +VD DPGLKGDTA  G KPATL TGAVV VPLFV IG+ I VDTR+G+Y
Sbjct:   124 SVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEY 183

Query:   226 MTR 228
             ++R
Sbjct:   184 VSR 186

GO:0043043 "peptide biosynthetic process" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0006414 "translational elongation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

UNIPROTKB|Q9KNS1 efp "Elongation factor P" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 84/182 (46%), Positives = 112/182 (61%)

Query:    47 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
             S+N+ K G  I +D  P  +LE  +VKPGKG AF R ++R  ++G  +E+TF++G T E 
Sbjct:     5 STNEFKGGLKIMLDNEPCVILENEYVKPGKGQAFNRVRIRKLLTGKVLEKTFKSGDTAEV 64

Query:   107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
             ADV      + Y DG  + FM+ +TFE++  +   VG+  KWL E   C L  W G  I 
Sbjct:    65 ADVVDIDLDYLYNDGEFYHFMNNSTFEQLAADAKAVGENAKWLVENNTCMLTLWNGNPIA 124

Query:   167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
                P  V+L V + DPG+KGDT   G KPATL TGAVV VPLFV IG+ I VDTR+ +Y+
Sbjct:   125 VTPPNFVELEVTETDPGVKGDTQGTGGKPATLSTGAVVRVPLFVQIGEVIKVDTRSAEYV 184

Query:   227 TR 228
              R
Sbjct:   185 GR 186

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|VC_2660 VC_2660 "elongation factor P" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 84/182 (46%), Positives = 112/182 (61%)

Query:    47 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
             S+N+ K G  I +D  P  +LE  +VKPGKG AF R ++R  ++G  +E+TF++G T E 
Sbjct:     5 STNEFKGGLKIMLDNEPCVILENEYVKPGKGQAFNRVRIRKLLTGKVLEKTFKSGDTAEV 64

Query:   107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
             ADV      + Y DG  + FM+ +TFE++  +   VG+  KWL E   C L  W G  I 
Sbjct:    65 ADVVDIDLDYLYNDGEFYHFMNNSTFEQLAADAKAVGENAKWLVENNTCMLTLWNGNPIA 124

Query:   167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
                P  V+L V + DPG+KGDT   G KPATL TGAVV VPLFV IG+ I VDTR+ +Y+
Sbjct:   125 VTPPNFVELEVTETDPGVKGDTQGTGGKPATLSTGAVVRVPLFVQIGEVIKVDTRSAEYV 184

Query:   227 TR 228
              R
Sbjct:   185 GR 186

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|CBU_1816 CBU_1816 "translation elongation factor P" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 80/183 (43%), Positives = 117/183 (63%)

Query:    47 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
             S+N+ + G  + VDG P  +++   VKPGKG AF R K RN  +G  +ERTF++G T+  
Sbjct:     5 STNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPA 64

Query:   107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
             ADV +   Q+ Y DG  + FM    +E+   ++  V + K+WLKE   C +  W G  + 
Sbjct:    65 ADVVEVEMQYLYNDGEFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLS 124

Query:   167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
              E P  V+L + + +PG++GDTA+GG+K A L+TGAVV VPLF+N G+ I VDTR G+Y+
Sbjct:   125 VEPPNFVELKITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYV 184

Query:   227 TRA 229
             +RA
Sbjct:   185 SRA 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7VEI7	EFP_PROMA	No assigned EC number	0.5409	0.7991	0.9838	yes	no
Q5N1T5	EFP_SYNP6	No assigned EC number	0.5737	0.7991	0.9891	yes	no
B2A549	EFP_NATTJ	No assigned EC number	0.5384	0.7947	0.9680	yes	no
Q7V3P5	EFP_PROMP	No assigned EC number	0.5409	0.7991	0.9838	yes	no
Q116D6	EFP_TRIEI	No assigned EC number	0.5464	0.7991	0.9891	yes	no
Q3ANM0	EFP_SYNSC	No assigned EC number	0.5300	0.7991	0.9786	yes	no
Q46I36	EFP_PROMT	No assigned EC number	0.5628	0.7991	0.9786	yes	no
Q7V9B9	EFP_PROMM	No assigned EC number	0.5300	0.7991	0.9838	yes	no
Q9K951	EFP_BACHD	No assigned EC number	0.5108	0.8034	0.9945	yes	no
Q67N94	EFP_SYMTH	No assigned EC number	0.5489	0.8034	0.9945	yes	no
A7Z6L3	EFP_BACA2	No assigned EC number	0.5	0.8034	0.9945	yes	no
Q0IE51	EFP_SYNS3	No assigned EC number	0.5573	0.7991	0.9786	yes	no
A5GPX5	EFP_SYNR3	No assigned EC number	0.5464	0.7991	0.9838	yes	no
Q24UX6	EFP_DESHY	No assigned EC number	0.5326	0.8034	0.9945	yes	no
Q3B0X4	EFP_SYNS9	No assigned EC number	0.5300	0.7991	0.9838	yes	no
A8FF29	EFP_BACP2	No assigned EC number	0.4945	0.8034	0.9945	yes	no
Q2RI92	EFP_MOOTA	No assigned EC number	0.5054	0.8034	0.9945	yes	no
A2BTX3	EFP_PROM5	No assigned EC number	0.5464	0.7991	0.9838	yes	no
A4IQT4	EFP_GEOTN	No assigned EC number	0.5217	0.8034	0.9945	yes	no
Q31DF8	EFP_PROM9	No assigned EC number	0.5464	0.7991	0.9838	yes	no
B8FQ76	EFP_DESHD	No assigned EC number	0.5326	0.8034	0.9945	yes	no
B2J711	EFP_NOSP7	No assigned EC number	0.5737	0.7991	0.9891	yes	no
B7JVR7	EFP_CYAP8	No assigned EC number	0.5519	0.7991	0.9891	yes	no
B0TEH1	EFP_HELMI	No assigned EC number	0.5163	0.8034	0.9945	yes	no
Q2JP65	EFP_SYNJB	No assigned EC number	0.5355	0.7991	0.9891	yes	no
Q7NL41	EFP_GLOVI	No assigned EC number	0.5380	0.7991	0.9786	yes	no
B0C899	EFP_ACAM1	No assigned EC number	0.5573	0.7991	0.9891	yes	no
Q7UA67	EFP_SYNPX	No assigned EC number	0.5300	0.7991	0.9786	yes	no
A2C5M7	EFP_PROM3	No assigned EC number	0.5300	0.7991	0.9838	yes	no
A9B9I2	EFP_PROM4	No assigned EC number	0.5409	0.7991	0.9838	yes	no
B1XKV1	EFP_SYNP2	No assigned EC number	0.5956	0.7991	0.9891	yes	no
B7KGU8	EFP_CYAP7	No assigned EC number	0.5573	0.7991	0.9891	yes	no
A2BZC9	EFP_PROM1	No assigned EC number	0.5628	0.7991	0.9786	yes	no
A5GHP3	EFP_SYNPW	No assigned EC number	0.5464	0.7991	0.9786	yes	no
Q3MAQ3	EFP_ANAVT	No assigned EC number	0.5245	0.7991	0.9891	yes	no
Q54760	EFP_SYNE7	No assigned EC number	0.5737	0.7991	0.9891	yes	no
Q65HH4	EFP_BACLD	No assigned EC number	0.5108	0.8034	0.9945	yes	no
B8HV20	EFP_CYAP4	No assigned EC number	0.5245	0.7991	0.9891	yes	no
Q44247	EFP_NOSS1	No assigned EC number	0.5245	0.7991	0.9891	yes	no
B0JHV3	EFP_MICAN	No assigned EC number	0.5846	0.7991	0.9891	yes	no
A3PA73	EFP_PROM0	No assigned EC number	0.5464	0.7991	0.9838	yes	no
A2BNF2	EFP_PROMS	No assigned EC number	0.5464	0.7991	0.9838	yes	no
Q2JUZ8	EFP_SYNJA	No assigned EC number	0.5355	0.7991	0.9891	yes	no
A5D339	EFP_PELTS	No assigned EC number	0.5136	0.7991	0.9891	yes	no
Q8DJD3	EFP_THEEB	No assigned EC number	0.5683	0.7991	0.9891	yes	no
A8G213	EFP_PROM2	No assigned EC number	0.5464	0.7991	0.9838	yes	no
Q5KX91	EFP_GEOKA	No assigned EC number	0.5217	0.8034	0.9945	yes	no
B7GHE5	EFP_ANOFW	No assigned EC number	0.5108	0.8034	0.9945	yes	no
B1WNP3	EFP_CYAA5	No assigned EC number	0.5573	0.7991	0.9838	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
PRK00529	186	PRK00529, PRK00529, elongation factor P; Validated	1e-100
TIGR00038	184	TIGR00038, efp, translation elongation factor P	2e-95
COG0231	131	COG0231, Efp, Translation elongation factor P (EF-	3e-49
PRK14578	187	PRK14578, PRK14578, elongation factor P; Provision	2e-41
PRK04542	189	PRK04542, PRK04542, elongation factor P; Provision	2e-36
TIGR02178	186	TIGR02178, yeiP, elongation factor P-like protein	2e-32
PRK12426	185	PRK12426, PRK12426, elongation factor P; Provision	2e-30
pfam09285	56	pfam09285, Elong-fact-P_C, Elongation factor P, C-	1e-26
smart00841	57	smart00841, Elong-fact-P_C, Elongation factor P, C	2e-25
cd05794	56	cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Trans	2e-25
pfam08207	58	pfam08207, EFP_N, Elongation factor P (EF-P) KOW-l	3e-24
cd04470	61	cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Trans	2e-23
pfam01132	55	pfam01132, EFP, Elongation factor P (EF-P) OB doma	6e-22
PRK03999	129	PRK03999, PRK03999, translation initiation factor	0.002

>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated

 Score =  288 bits (739), Expect = e-100
 Identities = 103/183 (56%), Positives = 139/183 (75%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           S+ND++ G  IE+DG P+ VLEF HVKPGKG AFVRTKL+N ++G+ VE+TF+AG  VE 
Sbjct: 3   SANDLRKGLVIEIDGEPYVVLEFEHVKPGKGQAFVRTKLKNLLTGSVVEKTFKAGDKVER 62

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
           ADV +   Q+ Y DG  +VFMD  T+E++ +    VGD  K+LKEGM+  ++F+ G+ I 
Sbjct: 63  ADVERREMQYLYNDGDGYVFMDTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYNGEPIS 122

Query: 167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
            E+P  V+L V + +PG+KGDTASGG+KPATL+TGAVV VPLF+N G++I VDTRTG+Y+
Sbjct: 123 VELPNFVELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFINEGEKIKVDTRTGEYV 182

Query: 227 TRA 229
            RA
Sbjct: 183 ERA 185

Length = 186

>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P

 Score =  276 bits (708), Expect = 2e-95
 Identities = 100/183 (54%), Positives = 138/183 (75%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           S+ND++ G  IE+DG P+ VLEF HVKPGKG AFVR KL+N ++G  +E+TFR+G  VE+
Sbjct: 2   SANDLRKGLVIELDGEPYVVLEFEHVKPGKGQAFVRVKLKNLLTGKVLEKTFRSGEKVEK 61

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
           ADV +   Q+ YKDG  +VFMD  T+E++ L +  +GD  K+LKE M+ ++ F+ G+ I 
Sbjct: 62  ADVEEREMQYLYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLKENMEVSVTFYNGEPIG 121

Query: 167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
            E+P  V+L V + +PG+KGDTASGG+KPATL+TGAVV VPLF+  G++I VDTRTG+Y+
Sbjct: 122 VELPNFVELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFIEEGEKIKVDTRTGEYV 181

Query: 227 TRA 229
            RA
Sbjct: 182 ERA 184

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria [Protein synthesis, Translation factors]. Length = 184

>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

 Score =  157 bits (399), Expect = 3e-49
 Identities = 59/127 (46%), Positives = 85/127 (66%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           S+++++ G  I +DG P+ V+E  HVKPGKG AFVR KL+N  +G  VE+TF+A   VE 
Sbjct: 5   SASELRKGLYIVIDGEPYVVVEISHVKPGKGGAFVRVKLKNLFTGKKVEKTFKADDKVEV 64

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
           A V ++T Q+ Y DG  +VFMDL T+E+  L +  +GD  K+LKEGM+  +L + G+ I 
Sbjct: 65  AIVERKTAQYLYIDGDFYVFMDLETYEQYELPKDQIGDAAKFLKEGMEVEVLLYNGEPIA 124

Query: 167 FEVPITV 173
            E+P  V
Sbjct: 125 VELPNFV 131

Length = 131

>gnl|CDD|173042 PRK14578, PRK14578, elongation factor P; Provisional

 Score =  139 bits (351), Expect = 2e-41
 Identities = 72/186 (38%), Positives = 117/186 (62%), Gaps = 2/186 (1%)

Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKP-GKGA-AFVRTKLRNYMSGTTVERTFRAGIT 103
           ++++D K G  I++DGAP  +L+     P  +GA   V+TK RN ++G  +E+TFR+G  
Sbjct: 2   YTTSDFKKGLVIQLDGAPCLLLDVTFQSPSARGANTMVKTKYRNLLTGQVLEKTFRSGDK 61

Query: 104 VEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGK 163
           VEEAD  +   QF Y DG   VFMDL T+E+  + E        +L +G +  L  ++G+
Sbjct: 62  VEEADFERHKGQFLYADGDRGVFMDLETYEQFEMEEDAFSAIAPFLLDGTEVQLGLFQGR 121

Query: 164 IIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTG 223
           +++ ++P+TV+LTV D  P +K  TA+  +K A L+TG  + VP ++  G++I VDTR G
Sbjct: 122 MVNVDLPMTVELTVTDTAPVMKNATATAQTKEAVLETGLRLQVPPYLESGEKIKVDTRDG 181

Query: 224 QYMTRA 229
           ++++RA
Sbjct: 182 RFISRA 187

Length = 187

>gnl|CDD|179863 PRK04542, PRK04542, elongation factor P; Provisional

 Score =  126 bits (318), Expect = 2e-36
 Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 3/184 (1%)

Query: 49  NDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNY--MSGTTVERTFRAGITVEE 106
           N+IK G  +E +G    V +     P         K+R Y   +G  VE  F+    ++ 
Sbjct: 5   NEIKKGMVVEYNGKLLLVKDIDRQSPSGRGGATLYKMRFYDVRTGLKVEERFKGDDILDT 64

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGM-DCNLLFWKGKII 165
            D+ +    F+Y DG  +VFMD   +      +  + D+  ++ EGM    +L   G+ +
Sbjct: 65  VDLTRRPVTFSYIDGDEYVFMDNEDYTPYTFKKDQIEDELLFIPEGMPGMQVLTVDGQPV 124

Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
             E+P TV L +V+  P +KG +AS  +KPATL TG V+ VP +++ G++I ++T   ++
Sbjct: 125 ALELPQTVDLEIVETAPSIKGASASARTKPATLSTGLVIQVPEYISTGEKIRINTEERKF 184

Query: 226 MTRA 229
           M RA
Sbjct: 185 MGRA 188

Length = 189

>gnl|CDD|131233 TIGR02178, yeiP, elongation factor P-like protein YeiP

 Score =  115 bits (290), Expect = 2e-32
 Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 3/185 (1%)

Query: 48  SNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNY--MSGTTVERTFRAGITVE 105
           ++++K GS +E +G    + +     P      VR K R Y   +G+ VE  F+A   ++
Sbjct: 2   ASEMKKGSIVEYNGKTLLIKDIQRSSPQGRGGNVRYKFRMYDVPTGSKVEERFKADDMLD 61

Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGM-DCNLLFWKGKI 164
             ++ +    F+YKDG  +VFMD   +     ++  + D+  ++ EG+    +    G  
Sbjct: 62  TVELLRREASFSYKDGEEYVFMDEEDYTPYTFDKDAIEDELLFISEGLSGMYVQLIDGSP 121

Query: 165 IDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQ 224
           +  E+P  V L +V+  P +KG +AS   KPA L TG VV VP ++  G+ IL++T    
Sbjct: 122 VALELPQHVVLEIVETPPEIKGASASKRPKPAKLITGLVVQVPEYITTGERILINTTERA 181

Query: 225 YMTRA 229
           +M RA
Sbjct: 182 FMGRA 186

This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae [Protein synthesis, Translation factors]. Length = 186

>gnl|CDD|183522 PRK12426, PRK12426, elongation factor P; Provisional

 Score =  110 bits (277), Expect = 2e-30
 Identities = 60/181 (33%), Positives = 96/181 (53%)

Query: 48  SNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEA 107
           S+ + VG  I      ++V+    V   KG  F++  L+   S   VER F+AG  V+EA
Sbjct: 4   SSQLSVGMFISTKDGLYKVVSVSKVTGPKGETFIKVSLQAADSDVVVERNFKAGQEVKEA 63

Query: 108 DVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDF 167
                  ++ Y +G  ++F+DL  ++++ + +  + D   +LK G+  + L + G +   
Sbjct: 64  QFEPRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALVYDGTVFSV 123

Query: 168 EVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMT 227
           E+P  ++L V   D      + SGG+K A L+TG  V VP FV IGD I VDTRT +Y+ 
Sbjct: 124 ELPHFLELMVSKTDFPGDSLSLSGGAKKALLETGVEVLVPPFVEIGDVIKVDTRTCEYIQ 183

Query: 228 R 228
           R
Sbjct: 184 R 184

Length = 185

>gnl|CDD|150075 pfam09285, Elong-fact-P_C, Elongation factor P, C-terminal

 Score = 96.8 bits (242), Expect = 1e-26
 Identities = 36/56 (64%), Positives = 48/56 (85%)

Query: 173 VQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTR 228
           V+L VV+ +PG+KGDTAS G+KPATL+TGA V VPLF+  G++I VDTRTG+Y++R
Sbjct: 1   VELEVVETEPGVKGDTASSGTKPATLETGAEVQVPLFIEEGEKIKVDTRTGEYVSR 56

Members of this family of nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology. Length = 56

>gnl|CDD|214849 smart00841, Elong-fact-P_C, Elongation factor P, C-terminal

 Score = 93.7 bits (234), Expect = 2e-25
 Identities = 39/57 (68%), Positives = 50/57 (87%), Gaps = 1/57 (1%)

Query: 173 VQLTVVDVDPGLKGDTASGGSK-PATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTR 228
           V+L V + +PG+KGDTASGG+K PATL+TGAVV VPLF+N GD+I VDTRTG+Y++R
Sbjct: 1   VELEVTETEPGVKGDTASGGTKKPATLETGAVVQVPLFINEGDKIKVDTRTGEYVSR 57

These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology. Length = 57

>gnl|CDD|240220 cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

 Score = 93.7 bits (234), Expect = 2e-25
 Identities = 35/56 (62%), Positives = 46/56 (82%)

Query: 173 VQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTR 228
           V+L V + +PG+KGDTAS G+KPATL+TGA V VPLF+  G++I VDTRTG+Y+ R
Sbjct: 1   VELEVTETEPGVKGDTASSGTKPATLETGAEVQVPLFIKEGEKIKVDTRTGEYVER 56

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P has 3 domains (domains I, II, and III). Domains II and III are S1-like domains. This CD includes domain III (the second S1 domain of EF_P). Domains II and III of have structural homology to the eIF5A domain C, suggesting that domains II and III evolved by duplication. Length = 56

>gnl|CDD|203876 pfam08207, EFP_N, Elongation factor P (EF-P) KOW-like domain

 Score = 90.9 bits (227), Expect = 3e-24
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITV 104
           S++D+K G  IE+DG P+ VLEF HVKPGKG AFVRTKL+N  +G  VE+TF++G  V
Sbjct: 1   SASDLKKGLVIEIDGEPYVVLEFEHVKPGKGQAFVRTKLKNLRTGAKVEKTFKSGDKV 58

Length = 58

>gnl|CDD|239916 cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

 Score = 89.1 bits (222), Expect = 2e-23
 Identities = 26/56 (46%), Positives = 39/56 (69%)

Query: 115 QFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVP 170
           Q+ YKDG  +VFMD  T+E++ L +  +GD  K+LKEGM+  +LF+ G+ I  E+P
Sbjct: 6   QYLYKDGDNYVFMDTETYEQIELPKEALGDAAKFLKEGMEVIVLFYNGEPIGVELP 61

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P has 3 domains (domains I, II, and III). Domains II and III are S1-like domains. This CD includes domain II (the first S1 domain of EF_P). Domains II and III have structural homology to the eIF5A domain C, suggesting that domains II and III evolved by duplication. Length = 61

>gnl|CDD|216318 pfam01132, EFP, Elongation factor P (EF-P) OB domain

 Score = 84.8 bits (211), Expect = 6e-22
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 115 QFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
           Q+ Y DG  +VFMD  T+E++ L +  +GD  K+LKEGM+  +LF+ G+ I
Sbjct: 5   QYLYNDGDNYVFMDTETYEQIELPKEALGDAAKFLKEGMEVTVLFYNGEPI 55

Length = 55

>gnl|CDD|235193 PRK03999, PRK03999, translation initiation factor IF-5A; Provisional

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 11/110 (10%)

Query: 50  DIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGIT--VEE 106
           ++K GS + +DG P +++E    KPGK G+A  R        G   +R+    +   VE 
Sbjct: 10  ELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDG--QKRSLVQPVDAKVEV 67

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFE--EVRLNETDVGDKKKWLKEGMD 154
             + K+T Q     G +   MDL T+E  E+ + E    + K  L+ G++
Sbjct: 68  PIIEKKTGQVLSIMGDVVQLMDLETYETFEIPIPE----ELKDKLEPGVE 113

Length = 129

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PRK12426	185	elongation factor P; Provisional	100.0
PRK14578	187	elongation factor P; Provisional	100.0
PRK04542	189	elongation factor P; Provisional	100.0
TIGR02178	186	yeiP elongation factor P-like protein YeiP. This m	100.0
PRK00529	186	elongation factor P; Validated	100.0
TIGR00038	184	efp translation elongation factor P. function: inv	100.0
COG0231	131	Efp Translation elongation factor P (EF-P)/transla	100.0
TIGR00037	130	eIF_5A translation initiation factor eIF-5A. Obser	100.0
PRK03999	129	translation initiation factor IF-5A; Provisional	100.0
PLN03107	159	eukaryotic translation initiation factor 5A; Provi	100.0
PF09285	56	Elong-fact-P_C: Elongation factor P, C-terminal; I	99.94
smart00841	56	Elong-fact-P_C Elongation factor P, C-terminal. Th	99.94
cd05794	56	S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elo	99.94
cd04470	61	S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo	99.88
PTZ00328	166	eukaryotic initiation factor 5a; Provisional	99.87
PF08207	58	EFP_N: Elongation factor P (EF-P) KOW-like domain;	99.85
PF01132	55	EFP: Elongation factor P (EF-P) OB domain; InterPr	99.83
KOG3271	156	consensus Translation initiation factor 5A (eIF-5A	99.71
cd04463	55	S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin	99.69
cd04467	57	S1_aIF5A S1_aIF5A: Archaeal translation Initiation	98.72
COG1499	355	NMD3 NMD protein affecting ribosome stability and	98.32
PF01287	69	eIF-5a: Eukaryotic elongation factor 5A hypusine,	97.27
cd04468	69	S1_eIF5A S1_eIF5A: Eukaryotic translation Initiati	93.91
cd04469	75	S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain.	85.47

>PRK12426 elongation factor P; Provisional

Probab=100.00  E-value=5.5e-76  Score=499.68  Aligned_cols=185  Identities=32%  Similarity=0.523  Sum_probs=183.4

Q ss_pred             EEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCCeE
Q 027058           45 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMF  124 (229)
Q Consensus        45 ~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd~~  124 (229)
                      |+++||||+|++|++||+||+|++++|+|||||+|++|+|||||.||+++|++|+++|++|.++++++++||||.||+.|
T Consensus         1 m~~~~dik~G~~i~~~g~~~~V~~~~h~kPGkg~A~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~   80 (185)
T PRK12426          1 MVLSSQLSVGMFISTKDGLYKVVSVSKVTGPKGETFIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEY   80 (185)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEecCCCCceEEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCCcEE
Q 027058          125 VFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVV  204 (229)
Q Consensus       125 ~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG~~v  204 (229)
                      +|||+|||||++|+++.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||++|
T Consensus        81 ~FMd~etyeQi~i~~~~lgd~~~fL~e~~~v~v~~~~~~~i~v~lP~~V~l~V~etep~~kgdTat~~~KpAtLeTG~~V  160 (185)
T PRK12426         81 LFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALVYDGTVFSVELPHFLELMVSKTDFPGDSLSLSGGAKKALLETGVEV  160 (185)
T ss_pred             EEecCCCceEEEeCHHHhhhHHhhccCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCcccCCCcccEEEcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccCeecCCEEEEEcCCCeeeecC
Q 027058          205 NVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       205 ~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      +||+||++||+|+||||||+|++||
T Consensus       161 ~VP~FI~~Gd~IkVdT~~geY~~R~  185 (185)
T PRK12426        161 LVPPFVEIGDVIKVDTRTCEYIQRV  185 (185)
T ss_pred             EeCCcccCCCEEEEECCCCeEEeeC
Confidence            9999999999999999999999997

>PRK14578 elongation factor P; Provisional

Probab=100.00  E-value=9.2e-74  Score=487.15  Aligned_cols=185  Identities=38%  Similarity=0.677  Sum_probs=182.1

Q ss_pred             EEEccccCCccEEEECCcEEEEEEEeEeeCCCC--ceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCC
Q 027058           45 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKG--AAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGS  122 (229)
Q Consensus        45 ~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG--~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd  122 (229)
                      |++++|||+|++|++||+||+|++++|+|||+|  +|++|+|||||.||+++|++|+++|++|.++++++++||||.||+
T Consensus         1 m~~~~dik~G~~i~~dg~~~~V~~~~~~kpg~~g~~a~vr~klknl~tG~~~e~tf~s~d~ve~a~ve~~~~qylY~dg~   80 (187)
T PRK14578          1 MYTTSDFKKGLVIQLDGAPCLLLDVTFQSPSARGANTMVKTKYRNLLTGQVLEKTFRSGDKVEEADFERHKGQFLYADGD   80 (187)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEEcCCCCCCceEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEeEeEEEEeCCC
Confidence            678999999999999999999999999999887  569999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCCc
Q 027058          123 MFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGA  202 (229)
Q Consensus       123 ~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG~  202 (229)
                      .|+|||+|||||++|+++.+|++.+||+|||+|.+.+|+|+||+|+||++|+|+|++|+|++||||+++++|||+||||+
T Consensus        81 ~~~FMD~etyEQ~~i~~~~~g~~~~fL~e~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~KGdT~t~~~KpA~leTG~  160 (187)
T PRK14578         81 RGVFMDLETYEQFEMEEDAFSAIAPFLLDGTEVQLGLFQGRMVNVDLPMTVELTVTDTAPVMKNATATAQTKEAVLETGL  160 (187)
T ss_pred             EEEEecCCCcEEEEecHHHhhhHHhhccCCCEEEEEEECCEEEEEECCCEEEEEEEECCCccccCccCCCcceEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccCeecCCEEEEEcCCCeeeecC
Q 027058          203 VVNVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       203 ~v~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      +|+||+||++||+|+||||||+|++||
T Consensus       161 ~v~VP~FI~~Gd~I~VdT~~g~Y~~R~  187 (187)
T PRK14578        161 RLQVPPYLESGEKIKVDTRDGRFISRA  187 (187)
T ss_pred             EEEeCCcccCCCEEEEECCCCcEEeeC
Confidence            999999999999999999999999997

>PRK04542 elongation factor P; Provisional

Probab=100.00  E-value=1.2e-73  Score=487.10  Aligned_cols=185  Identities=31%  Similarity=0.573  Sum_probs=182.1

Q ss_pred             EEEccccCCccEEEECCcEEEEEEEeEeeC-CCC-ceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCC
Q 027058           45 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKP-GKG-AAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGS  122 (229)
Q Consensus        45 ~i~a~dirkG~~I~~dG~py~Vv~~~~~kp-GKG-~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd  122 (229)
                      |+++||||+|++|++||+||+|++++|+|| ||| +|++|+|||||.||++++++|+++|++|.++++++++||||.||+
T Consensus         1 mi~~~dik~G~~i~~~g~~~~V~~~~h~kp~Gkg~~a~vr~klknl~tG~~~e~tfrs~ekve~a~~~~~~~qylY~dg~   80 (189)
T PRK04542          1 MPKANEIKKGMVVEYNGKLLLVKDIDRQSPSGRGGATLYKMRFYDVRTGLKVEERFKGDDILDTVDLTRRPVTFSYIDGD   80 (189)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEECCCCCCcceEEEEEEEEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCC
Confidence            688999999999999999999999999999 798 459999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCCceeeecCccchhhhhhccCCCCe-EEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCC
Q 027058          123 MFVFMDLTTFEEVRLNETDVGDKKKWLKEGMD-CNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTG  201 (229)
Q Consensus       123 ~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~-v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG  201 (229)
                      .|+|||+|||||++|+++.+||+.+||+||++ |++++|+|+||+|+||++|+|+|++|+|++||||+++++|||+||||
T Consensus        81 ~~~FMd~etyEQ~~i~~~~lgd~~~~L~e~~~~v~v~~~~~~~i~v~lP~~V~l~V~etep~~kGdT~~~~~KpAtLetG  160 (189)
T PRK04542         81 EYVFMDNEDYTPYTFKKDQIEDELLFIPEGMPGMQVLTVDGQPVALELPQTVDLEIVETAPSIKGASASARTKPATLSTG  160 (189)
T ss_pred             EEEEecCCCceEEEECHHHhhhHhhhhhcCCEEEEEEEECCEEEEEECCCEEEEEEEECCCCccccccCCCCccEEEcCC
Confidence            99999999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             cEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058          202 AVVNVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       202 ~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      ++|+||+||++||+|+||||||+|++||
T Consensus       161 ~~v~VP~FI~~Gd~I~VdT~tgeYv~R~  188 (189)
T PRK04542        161 LVIQVPEYISTGEKIRINTEERKFMGRA  188 (189)
T ss_pred             CEEEeCCcccCCCEEEEECCCCcEEeec
Confidence            9999999999999999999999999997

>TIGR02178 yeiP elongation factor P-like protein YeiP

Probab=100.00  E-value=1.3e-72  Score=479.50  Aligned_cols=183  Identities=28%  Similarity=0.538  Sum_probs=179.1

Q ss_pred             EccccCCccEEEECCcEEEEEEEeEeeCCCCce--EEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCCeE
Q 027058           47 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAA--FVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMF  124 (229)
Q Consensus        47 ~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A--~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd~~  124 (229)
                      .+||||+|++|++||+||+|++++|+|||+|+|  ++|+|||||.||++++++|+++|++|.++++++++||||.||+.|
T Consensus         1 ~~~~lk~G~~i~~dg~~~~V~~~~~~kpg~~ga~~~vk~klknl~tG~~~e~tf~s~e~ve~a~le~~~~qylY~dg~~~   80 (186)
T TIGR02178         1 KASEMKKGSIVEYNGKTLLIKDIQRSSPQGRGGNVRYKFRMYDVPTGSKVEERFKADDMLDTVELLRREASFSYKDGEEY   80 (186)
T ss_pred             CcccccCCCEEEECCEEEEEEEEEEECCCCCCCcEEEEEEEeEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCCeE
Confidence            378999999999999999999999999977666  899999999999999999999999999999999999999999999


Q ss_pred             EEecCCCceeeecCccchhhhhhccCCCCe-EEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCCcE
Q 027058          125 VFMDLTTFEEVRLNETDVGDKKKWLKEGMD-CNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAV  203 (229)
Q Consensus       125 ~FMD~etyEQi~v~~~~lgd~~~fL~eG~~-v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG~~  203 (229)
                      +|||+|||||++|+++.+|++.+||+|||+ |++.+|+|+||+|+||++|+|+|++|+|++||||+++++|||+||||++
T Consensus        81 ~FMD~etyEQ~~i~~~~lgd~~~fL~e~~~~v~v~~~~~~~i~v~lP~~V~l~V~etep~~KGdT~~~~~KpA~LeTG~~  160 (186)
T TIGR02178        81 VFMDEEDYTPYTFDKDAIEDELLFISEGLSGMYVQLIDGSPVALELPQHVVLEIVETPPEIKGASASKRPKPAKLITGLV  160 (186)
T ss_pred             EEccCCCcEEEEeCHHHhhhhhhhhhCCCEEEEEEEECCEEEEEECCCEEEEEEEECCCCcccccCCCCcccEEEcCCCE
Confidence            999999999999999999999999999997 9999999999999999999999999999999999999999999999999


Q ss_pred             EEcccCeecCCEEEEEcCCCeeeecC
Q 027058          204 VNVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       204 v~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      |+||+||++||+|+||||||+|++||
T Consensus       161 v~VP~FI~~Gd~IkVdTrtg~Y~~R~  186 (186)
T TIGR02178       161 VQVPEYITTGERILINTTERAFMGRA  186 (186)
T ss_pred             EEeCCeecCCCEEEEECCCCcEEccC
Confidence            99999999999999999999999997

This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.

>PRK00529 elongation factor P; Validated

Probab=100.00  E-value=1.8e-71  Score=473.04  Aligned_cols=185  Identities=56%  Similarity=0.948  Sum_probs=183.4

Q ss_pred             EEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCCeE
Q 027058           45 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMF  124 (229)
Q Consensus        45 ~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd~~  124 (229)
                      |+++|+||+|++|+++|+||+|++++|+|||||+|++|+++|||.||++++.+|+++|+++.+.++++++||+|.||+.|
T Consensus         1 ~~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGkg~A~vrvk~knL~tG~~~e~~f~~~e~ve~~~ve~~~~q~ly~dgd~~   80 (186)
T PRK00529          1 MISANDLRKGLVIEIDGEPYVVLEFEHVKPGKGQAFVRTKLKNLLTGSVVEKTFKAGDKVERADVERREMQYLYNDGDGY   80 (186)
T ss_pred             CcchhhcCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCeEEEEeCCCCEEEeccEEeEEEEEEEECCCEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCCcEE
Q 027058          125 VFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVV  204 (229)
Q Consensus       125 ~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG~~v  204 (229)
                      +|||+|||||++++.+.+|++.+||+||++|++++|+|+||+|+||++|+|+|+||+|++||||+++++|||+||||++|
T Consensus        81 ~fMD~etyeq~~l~~~~lg~~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v  160 (186)
T PRK00529         81 VFMDTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYNGEPISVELPNFVELEVTETEPGVKGDTASGGTKPATLETGAVV  160 (186)
T ss_pred             EEecCCCceeeEcCHHHhHHHHhhccCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCccCcccCCCcccEEEcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccCeecCCEEEEEcCCCeeeecC
Q 027058          205 NVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       205 ~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      +||+||++||+|+|||++|+|++||
T Consensus       161 ~VP~fI~~Gd~I~v~T~~g~y~~R~  185 (186)
T PRK00529        161 QVPLFINEGEKIKVDTRTGEYVERA  185 (186)
T ss_pred             EeCCeecCCCEEEEECCCCcEEeec
Confidence            9999999999999999999999997

>TIGR00038 efp translation elongation factor P

Probab=100.00  E-value=2.6e-71  Score=471.45  Aligned_cols=184  Identities=54%  Similarity=0.925  Sum_probs=182.2

Q ss_pred             EEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCCeEE
Q 027058           46 FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMFV  125 (229)
Q Consensus        46 i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd~~~  125 (229)
                      +++|+||+|++|+++|+||+|++++|+|||||+|++|+++|||.||++++++|+++|+++.+.++++++||+|.||+.|+
T Consensus         1 ~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGkg~A~~rvk~knL~tG~~~e~~f~~~~kve~~~~e~~~~q~ly~dgd~~~   80 (184)
T TIGR00038         1 ISANDLRKGLVIELDGEPYVVLEFEHVKPGKGQAFVRVKLKNLLTGKVLEKTFRSGEKVEKADVEEREMQYLYKDGDSYV   80 (184)
T ss_pred             CchhhccCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEcccEEeEEEEEEEECCCEEE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCCcEEE
Q 027058          126 FMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVN  205 (229)
Q Consensus       126 FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG~~v~  205 (229)
                      |||+|||||++++.+.+|+..+||+|||+|.+.+|+|+||+|+||++|+|+|+||+|++||||+++++|||+||||++|+
T Consensus        81 fMD~etyeq~~i~~~~l~~~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V~~t~p~~kg~t~~~~~K~A~letG~~v~  160 (184)
T TIGR00038        81 FMDTETYEQIELPKDLLGDAAKFLKENMEVSVTFYNGEPIGVELPNFVELEVTETEPGVKGDTASGGTKPATLETGAVVQ  160 (184)
T ss_pred             EeCCCCccceEcCHHHHHHHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCccccccCCCcccEEEcCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCeecCCEEEEEcCCCeeeecC
Q 027058          206 VPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       206 VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      ||+||++||+|+|||++|+|++||
T Consensus       161 VP~fi~~Gd~I~v~T~~g~y~~R~  184 (184)
T TIGR00038       161 VPLFIEEGEKIKVDTRTGEYVERA  184 (184)
T ss_pred             eCCcccCCCEEEEECCCCcEEecC
Confidence            999999999999999999999997

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.

>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-46  Score=300.59  Aligned_cols=131  Identities=45%  Similarity=0.780  Sum_probs=128.6

Q ss_pred             EEEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCC
Q 027058           43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGS  122 (229)
Q Consensus        43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd  122 (229)
                      ++|+++++||+|++|++||+||+|++++|+|||||+|++|+++|||+||++++.+|+++|++|.|.++++++||||.||+
T Consensus         1 ~~~i~~~~lr~G~~i~~dg~~~~V~~~~~~KpGKg~a~vrvk~k~l~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~   80 (131)
T COG0231           1 MAMISASELRKGLYIVIDGEPYVVVEISHVKPGKGGAFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGD   80 (131)
T ss_pred             CceeeHHHccCCCEEEECCeEEEEEEEEEccCCCCCcEEEEEEEEccCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceE
Q 027058          123 MFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITV  173 (229)
Q Consensus       123 ~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V  173 (229)
                      .|+|||+|||||++++.+.++|+.+||+|||+|++++|+|++++++||++|
T Consensus        81 ~~~FMD~etyeq~~v~~~~~~d~~~~l~eg~~v~v~~~~g~~i~v~lP~~v  131 (131)
T COG0231          81 FYVFMDLETYEQYELPKDQIGDAAKFLKEGMEVEVLLYNGEPIAVELPNFV  131 (131)
T ss_pred             eEEEccCCCceEEEecchhhhhHHHhcCCCCEEEEEEECCEEEEEECCCCC
Confidence            999999999999999999999999999999999999999999999999975

>TIGR00037 eIF_5A translation initiation factor eIF-5A

Probab=100.00  E-value=1.3e-37  Score=251.71  Aligned_cols=121  Identities=24%  Similarity=0.319  Sum_probs=115.8

Q ss_pred             EEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058           43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG  121 (229)
Q Consensus        43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg  121 (229)
                      ++.+++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++|++|.|.++++++||||.||
T Consensus         4 ~~~~~~~~irkG~~i~~~g~p~~V~e~~~~kpGkhG~A~vr~k~knl~tG~~~e~~f~s~~~ve~~~ve~~~~qylY~dg   83 (130)
T TIGR00037         4 TKQVQVSALRVGGYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVSPSTSKVEVPIVDRREYQVLAIMG   83 (130)
T ss_pred             ceeccHHHccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEEEEEEEEecC
Confidence            4578999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEE
Q 027058          122 SMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII  165 (229)
Q Consensus       122 d~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i  165 (229)
                      +.|+|||+|||||++|+.+.  +..+||+||++|.++-..|+..
T Consensus        84 ~~~~fMd~etyeq~~i~~~~--~~~~~Lke~~~V~v~~~~g~~~  125 (130)
T TIGR00037        84 GMVQLMDLDTYETDELPIPE--ELGDSLEPGFEVEYIEAMGQEK  125 (130)
T ss_pred             CEEEEEcCCCcEEEEecCCh--hHHHHhhcCCEEEEEecCCeEE
Confidence            99999999999999999885  8899999999999998877643

Observed in eukaryotes and archaea.

>PRK03999 translation initiation factor IF-5A; Provisional

Probab=100.00  E-value=5.1e-36  Score=242.15  Aligned_cols=118  Identities=25%  Similarity=0.342  Sum_probs=112.8

Q ss_pred             EEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCC
Q 027058           44 YAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGS  122 (229)
Q Consensus        44 ~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd  122 (229)
                      -.+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||.||++++.+|+++|++|.+.++++++||+|.||+
T Consensus         4 ~~~~~~~lrkG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s~d~~e~~~ve~~~~qylY~dg~   83 (129)
T PRK03999          4 KQVEVGELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEVPIIEKKTGQVLSIMGD   83 (129)
T ss_pred             ccccHHHccCCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecCCCceeeeeEEeEEEEEEEecCC
Confidence            368999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCe
Q 027058          123 MFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGK  163 (229)
Q Consensus       123 ~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~  163 (229)
                      .|+|||+|||||++|+.+  +++..||+||++|.++--.|+
T Consensus        84 ~~~fMd~eTyeq~~i~~~--~d~~~~l~eg~~v~v~~~~g~  122 (129)
T PRK03999         84 VVQLMDLETYETFEIPIP--EELKDKLEPGVEVEYWEAMGR  122 (129)
T ss_pred             EEEEecCCCceEEEecCC--hhHHhhCcCCCEEEEEhhCCe
Confidence            999999999999999988  888999999999998775554

>PLN03107 eukaryotic translation initiation factor 5A; Provisional

Probab=100.00  E-value=8.9e-33  Score=230.30  Aligned_cols=126  Identities=21%  Similarity=0.309  Sum_probs=110.2

Q ss_pred             CCCceEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEE
Q 027058           38 SKFPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQF  116 (229)
Q Consensus        38 ~~~~~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qy  116 (229)
                      +....++|+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|+++++++||
T Consensus        13 ~~~~~t~m~~~~~lKkG~~I~~~g~pc~V~e~~~~KpGKHG~A~vr~k~knl~TG~k~e~~f~s~~~ve~~~ve~~~~qy   92 (159)
T PLN03107         13 AGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQL   92 (159)
T ss_pred             cCCCceeccchHhccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEecCCCEEEEEEEEEEEEEE
Confidence            444567899999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             EEEeCCeE-EEecC--CCceeeecCc--cchhh-hhhccCCCCeEEEEEE--CCe
Q 027058          117 TYKDGSMF-VFMDL--TTFEEVRLNE--TDVGD-KKKWLKEGMDCNLLFW--KGK  163 (229)
Q Consensus       117 lY~Dgd~~-~FMD~--etyEQi~v~~--~~lgd-~~~fL~eG~~v~v~~~--~g~  163 (229)
                      ||.||+.| +|||+  ++|||+.||.  +.+++ ...+..+|.++.|..|  .|+
T Consensus        93 ly~dgd~y~~fMD~~get~eqi~v~~~~~el~~~i~~~f~~g~~~~v~v~~~mg~  147 (159)
T PLN03107         93 IDISEDGFVSLMDESGNTKDDLKLPTEDDTLAEQIKDGFDEGKDLVVTVMSAMGE  147 (159)
T ss_pred             EEEcCCceEEEEcCCCCcceeEEccCcchHHHHHHHHHHhCCCeEEEEEEecCCe
Confidence            99999996 99999  6999999985  34544 3345577988544444  455

>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []

Probab=99.94  E-value=4.3e-27  Score=164.50  Aligned_cols=56  Identities=59%  Similarity=0.959  Sum_probs=50.2

Q ss_pred             EEEEEEEcCCCcccccCCCCcccEEecCCcEEEcccCeecCCEEEEEcCCCeeeec
Q 027058          173 VQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTR  228 (229)
Q Consensus       173 V~l~V~et~p~~kgdta~~~~K~A~LetG~~v~VP~FI~~Gd~I~V~T~~g~Y~~R  228 (229)
                      |+|+|+||+|++||||+++++|+|+||||++|+||+||++||+|+|||++|+|++|
T Consensus         1 V~l~V~etep~~kg~t~~~~~K~A~letG~~i~VP~FI~~Gd~I~VdT~~g~Yv~R   56 (56)
T PF09285_consen    1 VELEVVETEPAVKGDTASSSYKPATLETGAEIQVPLFIEEGDKIKVDTRDGSYVER   56 (56)
T ss_dssp             EEEEEEEE-SSSTTSSSSTTEEEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCccCcccCCCccEEEEcCCCEEEccceecCCCEEEEECCCCeEeCC
Confidence            68999999999999999999999999999999999999999999999999999998

; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.

>smart00841 Elong-fact-P_C Elongation factor P, C-terminal

Probab=99.94  E-value=3.4e-27  Score=165.01  Aligned_cols=56  Identities=70%  Similarity=1.152  Sum_probs=55.0

Q ss_pred             EEEEEEEcCCCcccccCCCCcccEEecCCcEEEcccCeecCCEEEEEcCCCeeeec
Q 027058          173 VQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTR  228 (229)
Q Consensus       173 V~l~V~et~p~~kgdta~~~~K~A~LetG~~v~VP~FI~~Gd~I~V~T~~g~Y~~R  228 (229)
                      |+|+|+||+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|
T Consensus         1 V~l~V~etep~vkG~T~~~~~K~A~letG~~i~VP~FI~~Gd~I~V~T~~g~Y~~R   56 (56)
T smart00841        1 VELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFINEGDKIKVDTRTGEYVSR   56 (56)
T ss_pred             CEEEEEECCCCccccccCCCcceEEECCCCEEEcCCcccCCCEEEEECCCCcEEcC
Confidence            58999999999999999999999999999999999999999999999999999998

These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.

>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

Probab=99.94  E-value=3.6e-27  Score=164.88  Aligned_cols=56  Identities=63%  Similarity=1.045  Sum_probs=55.0

Q ss_pred             EEEEEEEcCCCcccccCCCCcccEEecCCcEEEcccCeecCCEEEEEcCCCeeeec
Q 027058          173 VQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTR  228 (229)
Q Consensus       173 V~l~V~et~p~~kgdta~~~~K~A~LetG~~v~VP~FI~~Gd~I~V~T~~g~Y~~R  228 (229)
                      |+|+|+||+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|
T Consensus         1 v~l~V~etep~~kG~T~~~~~K~A~letG~~i~VP~FI~~Gd~I~V~T~~g~Y~~R   56 (56)
T cd05794           1 VELEVTETEPGVKGDTASSGTKPATLETGAEVQVPLFIKEGEKIKVDTRTGEYVER   56 (56)
T ss_pred             CEEEEEECCCCccccccCCCcceEEECCCCEEEcCCeecCCCEEEEECCCCcEecC
Confidence            58999999999999999999999999999999999999999999999999999998

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P

>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

Probab=99.88  E-value=5.2e-23  Score=146.33  Aligned_cols=61  Identities=43%  Similarity=0.806  Sum_probs=59.8

Q ss_pred             eeeeeEEEEEeCCeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECC
Q 027058          110 FKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVP  170 (229)
Q Consensus       110 erk~~qylY~Dgd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP  170 (229)
                      +++++||||.||+.|+|||++||||++|+++.+|++.+||+||++|++++|+|+||+|+||
T Consensus         1 e~~~~qylY~dg~~~~FMd~etyeQ~~i~~~~igd~~~~L~e~~~v~v~~~~~~~i~v~lP   61 (61)
T cd04470           1 EEREMQYLYKDGDNYVFMDTETYEQIELPKEALGDAAKFLKEGMEVIVLFYNGEPIGVELP   61 (61)
T ss_pred             CCceEEEEEeCCCEEEEeCCCCceEEEECHHHhhhHHhhCcCCCEEEEEEECCEEEEEECc
Confidence            5789999999999999999999999999999999999999999999999999999999999

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P

>PTZ00328 eukaryotic initiation factor 5a; Provisional

Probab=99.87  E-value=3.5e-21  Score=160.76  Aligned_cols=122  Identities=19%  Similarity=0.229  Sum_probs=107.6

Q ss_pred             CceEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEE
Q 027058           40 FPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTY  118 (229)
Q Consensus        40 ~~~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY  118 (229)
                      .+.++.++++.||+|.+|.++|+||+|++++.+|||| |+|++++...+|+||+++|...|+.++++.|.++|+++|++.
T Consensus        17 as~t~p~q~~~LkkG~yvvIkGrPCKIveistSKtGKHGhAK~~ivaidIFTgkK~edi~Ps~hnv~VP~V~r~~yqli~   96 (166)
T PTZ00328         17 ASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTFTYSVLD   96 (166)
T ss_pred             CCceecccccceeECCEEEECCeeeEEEEEecCCCCcCCceEEEEEEEecCCCCEEeeecCccceeEeeeEEeeEEEEEE
Confidence            3457899999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             EeCC-------eEEEecCCCceeeec--Cc-cchhh-hhhccCCCCeEEEEEEC
Q 027058          119 KDGS-------MFVFMDLTTFEEVRL--NE-TDVGD-KKKWLKEGMDCNLLFWK  161 (229)
Q Consensus       119 ~Dgd-------~~~FMD~etyEQi~v--~~-~~lgd-~~~fL~eG~~v~v~~~~  161 (229)
                      .++|       ..++||.+.|+...|  |. +.|+. ....+.+|.+|.|.+|.
T Consensus        97 I~~d~~~~~~g~v~LMd~~g~~k~dl~lp~~~el~~~ik~~f~~g~ev~v~vi~  150 (166)
T PTZ00328         97 IQPNEDPSLPAHLSLMDDEGESREDLDMPPDAALATQIKEQFDSGKEVLVVVVS  150 (166)
T ss_pred             EcCCCcccccceEEEEcCCCCeeecccCCChhHHHHHHHHHhcCCCeEEEEEEh
Confidence            9876       378999998887765  43 34444 34567999999877774

>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors

Probab=99.85  E-value=3.8e-21  Score=135.42  Aligned_cols=58  Identities=57%  Similarity=0.979  Sum_probs=53.7

Q ss_pred             EccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeE
Q 027058           47 SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITV  104 (229)
Q Consensus        47 ~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkv  104 (229)
                      +|+|||+|++|++||+||+|++++|++||||+|+||+|||||.||+++|.+|+++|+|
T Consensus         1 sa~dlr~G~~i~~~g~~~~V~~~~~~k~gkg~a~v~~klknl~tG~~~e~tf~s~d~v   58 (58)
T PF08207_consen    1 SASDLRKGMVIEIDGEPYVVLDFQHVKPGKGGAFVRVKLKNLRTGSKVEKTFRSGDKV   58 (58)
T ss_dssp             EGGG--TTSEEEETTEEEEEEEEEEECCTTSSSEEEEEEEETTTTEEEEEEEETT-EE
T ss_pred             CHHHccCCCEEEECCEEEEEEEEEEECCCCCCeEEEEEEEECCCCCEEEEEECCCCcC
Confidence            5899999999999999999999999999999999999999999999999999999986

; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.

>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []

Probab=99.83  E-value=1.1e-20  Score=131.78  Aligned_cols=55  Identities=44%  Similarity=0.866  Sum_probs=49.9

Q ss_pred             eeeeEEEEEeCCeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEE
Q 027058          111 KETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII  165 (229)
Q Consensus       111 rk~~qylY~Dgd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i  165 (229)
                      ||++||||.||+.|+|||++||||++|+++.+|++.+||+||++|++++|+|+||
T Consensus         1 ~r~~qylY~dgd~~~FMd~etyeQi~v~~~~~g~~~~~L~eg~~v~v~~~~~~~I   55 (55)
T PF01132_consen    1 RREMQYLYKDGDNYVFMDTETYEQIEVPKDQLGDALKFLKEGMEVQVLFYEGKPI   55 (55)
T ss_dssp             EEEEEEEEEESSEEEEEETTT--EEEEEHHHHTTTGCC--TTEEEEEEEETTEEE
T ss_pred             CceEEEEEeCCCEEEEecCCCceEEEecHHHhChHHhhCcCCCEEEEEEECCEEC
Confidence            6899999999999999999999999999999999999999999999999999997

Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.

>KOG3271 consensus Translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=4.2e-17  Score=132.76  Aligned_cols=112  Identities=20%  Similarity=0.346  Sum_probs=101.4

Q ss_pred             EEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058           43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG  121 (229)
Q Consensus        43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg  121 (229)
                      ++.++++.||++-+|.++|+||+|++++.+|.|| |+|++++..++|+||+++|.-++|+++++++.++|.++|.+-.++
T Consensus        18 t~p~q~salrkNG~vviK~rpckivEmSTsKtGKHGhAKvh~vaidifTgkk~edI~psthn~dVp~vkr~~yqLidIsd   97 (156)
T KOG3271|consen   18 TYPMQCSALRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKVHIVAIDIFTGKKLEDICPSTHNMDVPVVKRVDYQLIDISD   97 (156)
T ss_pred             cccchhhheeeCCEEEEcCCCceEEEeecccCCcCCceEEEEEEEEeecCcccccccCCCCccccCccccceeEEEEecC
Confidence            4688999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecC--CCceeeecCccchhhhhh-ccCCCCe
Q 027058          122 SMFVFMDL--TTFEEVRLNETDVGDKKK-WLKEGMD  154 (229)
Q Consensus       122 d~~~FMD~--etyEQi~v~~~~lgd~~~-fL~eG~~  154 (229)
                      +...|||+  ++-+++.+|...++++.. -..+|..
T Consensus        98 ~~~sl~t~sG~~kdDlklp~~el~~~i~~~~e~g~d  133 (156)
T KOG3271|consen   98 GYLSLMTDSGETKDDLKLPEGELGNQIRQGFEEGKD  133 (156)
T ss_pred             CeEEEEcCCCCcchhccCcchhHHHHHHHhhcCCCc
Confidence            98889998  577888899888887553 3344443

>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain

Probab=99.69  E-value=4.7e-17  Score=112.70  Aligned_cols=55  Identities=22%  Similarity=0.148  Sum_probs=51.4

Q ss_pred             eeeEEEEEeCCeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEE
Q 027058          112 ETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDF  167 (229)
Q Consensus       112 k~~qylY~Dgd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v  167 (229)
                      +++||||.||+.|+|||+|||||++++++.. +..+||+||++|.|++|+|+|+++
T Consensus         1 ~~~qylY~dg~~~~fMd~etyeq~~v~~~~~-~~~~~l~eg~~v~v~~~~g~~i~~   55 (55)
T cd04463           1 RELQVLDIQGSKPVTMDLETYEVVQVPPPVD-QSFESFEPGEVVLVDTRTGQYVGV   55 (55)
T ss_pred             CCEEEEEcCCCEeEEecCCCceEEEeCHHHh-hHHhhCCCCCEEEEEEECCEEEeC
Confidence            5799999999999999999999999999874 589999999999999999999874

The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.

>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain

Probab=98.72  E-value=3.8e-08  Score=69.27  Aligned_cols=54  Identities=24%  Similarity=0.287  Sum_probs=46.1

Q ss_pred             eeeeeeEEEEEeCCeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeE
Q 027058          109 VFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKI  164 (229)
Q Consensus       109 verk~~qylY~Dgd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~  164 (229)
                      ++||..|.++.+|+..++||+||||.++++...  +...-+++|.+|.++...|+.
T Consensus         1 i~k~~aqVisi~g~~vQlMD~eTYeT~ev~~p~--~~~~~i~~G~eV~y~~~~g~~   54 (57)
T cd04467           1 IERKTGQVLSIMGDVVQLMDLETYETFEVPIPE--EIKDKLEPGKEVEYWESMGKR   54 (57)
T ss_pred             CcceEEEEEEEcCCEEEEeccccceeEEEecch--hhcccCCCCCEEEEEeecCeE
Confidence            589999999999999999999999999999752  223458999999988887863

aIF5A is a homolog of eukaryotic eIF5A. IF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is a post-translationally modified lysine and is essential for IF5A function. In yeast, eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the cold-shock domain which binds RNA. Moreover, IF5A prefers binding to the actively translating ribosome. This evidence suggests that IF5A plays a role in translation elongation instead of translation initiation as previously proposed.

>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=6.9e-06  Score=76.77  Aligned_cols=110  Identities=18%  Similarity=0.225  Sum_probs=88.1

Q ss_pred             EEEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEE----EeeeeeeeeEEEE
Q 027058           43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE----EADVFKETKQFTY  118 (229)
Q Consensus        43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve----~~~verk~~qylY  118 (229)
                      .+.+.+.++|+|++|.++|..+.++...+    +     ++.++|+.|++..+.+|.....-+    ..+-+-+.+.++.
T Consensus       239 t~Svrip~~~~gDiV~~~~~~~~~v~~~~----~-----~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vvs  309 (355)
T COG1499         239 TYSVRIPEFRPGDIVSVRGRQLVLVRSIG----K-----GIVVLDLETGEPVEITWSVYKRNEGKVAVKEPRLKKAVVVS  309 (355)
T ss_pred             EEEEECCCCCCCCEEEECCCeEEEEEEec----C-----ceEEEecccCCccccChhhcccCcceeeeccccceEEEEEe
Confidence            58999999999999999996665555432    3     589999999988888775544433    3333336888899


Q ss_pred             EeCCeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEE
Q 027058          119 KDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFE  168 (229)
Q Consensus       119 ~Dgd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~  168 (229)
                      .+++..+|||++|||-+++..+       =|.+|.+|.++.++++...++
T Consensus       310 ~~~~~~~v~d~et~e~~~~~~~-------~~~~g~~v~v~~~~~~~~~~~  352 (355)
T COG1499         310 RDPSAIQVLDPETYEARTVKGP-------SLEEGDEVKVFKVRGRNYVVE  352 (355)
T ss_pred             cCCCceEEEecceEEEEeccCC-------CCCCCCEEEEEEEeceEEeec
Confidence            9999999999999999999876       368999999999999876554

>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []

Probab=97.27  E-value=0.0011  Score=48.35  Aligned_cols=55  Identities=24%  Similarity=0.328  Sum_probs=39.6

Q ss_pred             eeeeeeeEEEEEeCC-eEEEecCCCceeee---cCccchhhhh-hccCCCCe--EEEEEECCe
Q 027058          108 DVFKETKQFTYKDGS-MFVFMDLTTFEEVR---LNETDVGDKK-KWLKEGMD--CNLLFWKGK  163 (229)
Q Consensus       108 ~verk~~qylY~Dgd-~~~FMD~etyEQi~---v~~~~lgd~~-~fL~eG~~--v~v~~~~g~  163 (229)
                      .|+|+++|.+..++| ...+|| ++||+.+   +|...+++.. ..+.+|.+  |.++...|+
T Consensus         1 ~V~r~eyqli~I~~Dg~lsLMd-e~get~eDl~lP~~el~~ei~~~~~~g~~~~Vtv~~amG~   62 (69)
T PF01287_consen    1 IVKRKEYQLIDIDGDGFLSLMD-EDGETREDLKLPDGELGEEIKAKFEEGKEVLVTVLSAMGE   62 (69)
T ss_dssp             -EEEEEEEEEEEETTTEEEEEE-TTS-EEEEEECCSHHHHHHHHHHHHTTCEEEEEEEEETTE
T ss_pred             CeEEEEEEEEEEccCcEEEEEc-CCCCeeccEEecccchhHHHHhhccCCCeEEEEEEeeCCc
Confidence            478999999999987 678999 6666555   8866776643 45589988  555555554

Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.

>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain

Probab=93.91  E-value=0.17  Score=36.97  Aligned_cols=51  Identities=25%  Similarity=0.352  Sum_probs=38.2

Q ss_pred             eeeeeeEEEEEeCCeEEEecC--CCceeeecCccchhhhhh-ccCCCCeEEEEE
Q 027058          109 VFKETKQFTYKDGSMFVFMDL--TTFEEVRLNETDVGDKKK-WLKEGMDCNLLF  159 (229)
Q Consensus       109 verk~~qylY~Dgd~~~FMD~--etyEQi~v~~~~lgd~~~-fL~eG~~v~v~~  159 (229)
                      |.|++||++..+++...+|+.  ++-|++.+|.+.++...+ -..+|..+.+..
T Consensus         1 V~R~eYqLidI~dGflsLm~e~G~~k~DlklP~~elg~~I~~~f~~gk~~~vtV   54 (69)
T cd04468           1 VKRTEYQLIDIDDGFLSLMDDDGETREDLKLPEGELGKEIREKFDEGKDVLVTV   54 (69)
T ss_pred             CcceeEEEEeecCCeEEEEcCCCCcccCCcCCcHHHHHHHHHHHhCCCcEEEEE
Confidence            468999999998777789976  679999999988888543 225566544443

eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.

>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain

Probab=85.47  E-value=3.5  Score=30.56  Aligned_cols=52  Identities=10%  Similarity=0.056  Sum_probs=35.7

Q ss_pred             eeeEEEEEeCCeEEEecC--CCceeeecC-ccchhhhhh-ccCCCC-e--EEEEEECCe
Q 027058          112 ETKQFTYKDGSMFVFMDL--TTFEEVRLN-ETDVGDKKK-WLKEGM-D--CNLLFWKGK  163 (229)
Q Consensus       112 k~~qylY~Dgd~~~FMD~--etyEQi~v~-~~~lgd~~~-fL~eG~-~--v~v~~~~g~  163 (229)
                      ++||.+..+++...+||.  ++-+++.+| .+.++...+ -..+|. +  |.|+-..|+
T Consensus         3 ~eYqLidI~DG~lsLM~e~G~~kdDl~lP~~~~l~~~I~~~f~~gk~~v~VtVlsAmGe   61 (75)
T cd04469           3 KQYRVLDIQDGSIVAMTETGDVKQGLPVIDQSNLWTRLKTAFESGRGSVRVLVVNDGGR   61 (75)
T ss_pred             eEEEEEEecCCeEEEEcCCCCcccCccCCCcchHHHHHHHHHHCCCCcEEEEEEccCCe
Confidence            589999996667789975  678999999 777877543 126666 4  444444443

Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
1yby_A	215	Conserved Hypothetical Protein Cth-95 From Clostrid		3e-44
3a5z_B	191	Crystal Structure Of Escherichia Coli Genx In Compl		3e-44
3tre_A	191	Structure Of A Translation Elongation Factor P (Efp		1e-39
1ueb_A	184	Crystal Structure Of Translation Elongation Factor		2e-38
3oyy_A	191	Structure Of Pseudomonas Aeruginosa Elongation Fact		9e-24

>pdb|1YBY|A Chain A, Conserved Hypothetical Protein Cth-95 From Clostridium Thermocellum Length = 215

Iteration: 1
 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 120/182 (65%)
Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           S+ D K G   E+DG  ++V+EF HVKPGKGAAFVRTKL+N ++G T+E+TF       +
Sbjct: 33  SAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKXPK 92
Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
           A + ++  Q+ Y DG ++ F D  TFE++ L +  +GD  K++KE     +L  KG +  
Sbjct: 93  AHIERKDXQYLYNDGDLYYFXDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFG 152
Query: 167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
            E P  V+L V D +PG KGDTA+G +KPA ++TGA + VPLFVN GD I +DTRTG+Y 
Sbjct: 153 IEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYX 212
Query: 227 TR 228
            R
Sbjct: 213 ER 214

>pdb|3A5Z|B Chain B, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 191

Iteration: 1
 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/187 (47%), Positives = 117/187 (62%)
Query: 42  RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAG 101
            +  + SND + G  I +DG P+ V     VKPGKG AF R KLR  ++GT VE+TF++ 
Sbjct: 3   HMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKST 62
Query: 102 ITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWK 161
            + E ADV      + Y DG  + FM+  TFE++  +   +GD  KWL +  +C +  W 
Sbjct: 63  DSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWN 122
Query: 162 GKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTR 221
           G+ I    P  V+L +VD DPGLKGDTA  G KPATL TGAVV VPLFV IG+ I VDTR
Sbjct: 123 GQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTR 182
Query: 222 TGQYMTR 228
           +G+Y++R
Sbjct: 183 SGEYVSR 189

>pdb|3TRE|A Chain A, Structure Of A Translation Elongation Factor P (Efp) From Coxiella Burnetii Length = 191

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 116/184 (63%)
Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            S+N+ + G  + VDG P  +++   VKPGKG AF R K RN  +G  +ERTF++G T+ 
Sbjct: 7   HSTNEFRGGLKVXVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLP 66
Query: 106 EADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII 165
            ADV +   Q+ Y DG  + F     +E+   ++  V + K+WLKE   C +  W G  +
Sbjct: 67  AADVVEVEXQYLYNDGEFWHFXTSENYEQHAASKEAVAEAKQWLKEEALCXVTXWNGVPL 126
Query: 166 DFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQY 225
             E P  V+L + + +PG++GDTA+GG+K A L+TGAVV VPLF+N G+ I VDTR G+Y
Sbjct: 127 SVEPPNFVELKITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEY 186
Query: 226 MTRA 229
           ++RA
Sbjct: 187 VSRA 190

>pdb|1UEB|A Chain A, Crystal Structure Of Translation Elongation Factor P From Thermus Thermophilus Hb8 Length = 184

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 119/186 (63%), Gaps = 5/186 (2%)
Query: 46  FSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            S  D++ G+ +++DG  W  +E+ H K G+G A V  K +N  +G TVERTF +G  +E
Sbjct: 2   ISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLE 61
Query: 106 EADVFKETK--QFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGK 163
             D++ ET+  Q+ Y +G   VFMDL T+E+  +  + V    ++ KEGM      ++G+
Sbjct: 62  --DIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRV-VGAEFFKEGMTALGDMYEGQ 118
Query: 164 IIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTG 223
            I    P  V+L VVD  PG++GDT SGGSKPATL+TGAVV VPLFV  G+ I VDTRTG
Sbjct: 119 PIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTG 178
Query: 224 QYMTRA 229
           +Y+ RA
Sbjct: 179 EYVGRA 184

>pdb|3OYY|A Chain A, Structure Of Pseudomonas Aeruginosa Elongation Factor P Length = 191

Iteration: 1
 Score =  106 bits (265), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           ++ + + G    ++GAPW + +    K G+ AA V+ KL+N ++G   E  F+A   +E 
Sbjct: 6   TAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEP 65
Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMD--CNLLFWKGKI 164
             + ++   ++Y    ++VFMD + F +  + + D+     ++++GM   C  +F+  K+
Sbjct: 66  IILDRKEVTYSYFADPLYVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKV 124
Query: 165 IDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQ 224
           I  E+P T+   +   +P ++GDT+    K A L+ GA + V  F  IGD I +DTRTG+
Sbjct: 125 ISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGE 184
Query: 225 YMTR 228
           Y +R
Sbjct: 185 YKSR 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
3a5z_B	191	EF-P, elongation factor P; aminoacyl-tRNA syntheta	1e-108
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	1e-108
1yby_A	215	Translation elongation factor P; conserved hypothe	1e-106
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	1e-105
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	1e-101
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	9e-45
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	4e-44
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	2e-41
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	1e-23
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	2e-23
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	2e-22
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	5e-12

>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Length = 191

 Score =  307 bits (789), Expect = e-108
 Identities = 88/183 (48%), Positives = 115/183 (62%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
            SND + G  I +DG P+ V     VKPGKG AF R KLR  ++GT VE+TF++  + E 
Sbjct: 8   YSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEG 67

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
           ADV      + Y DG  + FM+  TFE++  +   +GD  KWL +  +C +  W G+ I 
Sbjct: 68  ADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPIS 127

Query: 167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
              P  V+L +VD DPGLKGDTA  G KPATL TGAVV VPLFV IG+ I VDTR+G+Y+
Sbjct: 128 VTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYV 187

Query: 227 TRA 229
           +R 
Sbjct: 188 SRV 190

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Length = 191

 Score =  307 bits (788), Expect = e-108
 Identities = 80/183 (43%), Positives = 117/183 (63%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           S+N+ + G  + VDG P  +++   VKPGKG AF R K RN  +G  +ERTF++G T+  
Sbjct: 8   STNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPA 67

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
           ADV +   Q+ Y DG  + FM    +E+   ++  V + K+WLKE   C +  W G  + 
Sbjct: 68  ADVVEVEMQYLYNDGEFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLS 127

Query: 167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
            E P  V+L + + +PG++GDTA+GG+K A L+TGAVV VPLF+N G+ I VDTR G+Y+
Sbjct: 128 VEPPNFVELKITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYV 187

Query: 227 TRA 229
           +RA
Sbjct: 188 SRA 190

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Length = 215

 Score =  305 bits (783), Expect = e-106
 Identities = 88/182 (48%), Positives = 123/182 (67%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           S+ D K G   E+DG  ++V+EF HVKPGKGAAFVRTKL+N ++G T+E+TF     + +
Sbjct: 33  SAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPK 92

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
           A + ++  Q+ Y DG ++ FMD  TFE++ L +  +GD  K++KE     +L  KG +  
Sbjct: 93  AHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFG 152

Query: 167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
            E P  V+L V D +PG KGDTA+G +KPA ++TGA + VPLFVN GD I +DTRTG+YM
Sbjct: 153 IEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYM 212

Query: 227 TR 228
            R
Sbjct: 213 ER 214

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Length = 184

 Score =  299 bits (768), Expect = e-105
 Identities = 83/183 (45%), Positives = 115/183 (62%), Gaps = 1/183 (0%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           S  D++ G+ +++DG  W  +E+ H K G+G A V  K +N  +G TVERTF +G  +E+
Sbjct: 3   SVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLED 62

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIID 166
             V     Q+ Y +G   VFMDL T+E+  +  + V    ++ KEGM      ++G+ I 
Sbjct: 63  IYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVG-AEFFKEGMTALGDMYEGQPIK 121

Query: 167 FEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYM 226
              P  V+L VVD  PG++GDT SGGSKPATL+TGAVV VPLFV  G+ I VDTRTG+Y+
Sbjct: 122 VTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYV 181

Query: 227 TRA 229
            RA
Sbjct: 182 GRA 184

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Length = 191

 Score =  291 bits (747), Expect = e-101
 Identities = 56/185 (30%), Positives = 102/185 (55%), Gaps = 3/185 (1%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           ++ + + G    ++GAPW + +    K G+ AA V+ KL+N ++G   E  F+A   +E 
Sbjct: 6   TAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEP 65

Query: 107 ADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMD--CNLLFWKGKI 164
             + ++   ++Y    ++VFMD + F +  + + D+     ++++GM   C  +F+  K+
Sbjct: 66  IILDRKEVTYSYFADPLYVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKV 124

Query: 165 IDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQ 224
           I  E+P T+   +   +P ++GDT+    K A L+ GA + V  F  IGD I +DTRTG+
Sbjct: 125 ISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGE 184

Query: 225 YMTRA 229
           Y +R 
Sbjct: 185 YKSRV 189

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136

 Score =  145 bits (367), Expect = 9e-45
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 4/132 (3%)

Query: 40  FPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTF 98
                   + ++K GS + +DG P RV+E    K GK G+A  R        G     + 
Sbjct: 3   VMSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSL 62

Query: 99  RAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDK-KKWLKEGMDCNL 157
                VE   + K T Q     G +   MD+  ++ + +    V ++ K  L  G +  +
Sbjct: 63  PVDAQVEVPIIEKFTAQILSVSGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEV 122

Query: 158 LFWKG--KIIDF 167
                  KII  
Sbjct: 123 WQILDRYKIIRV 134

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138

 Score =  143 bits (363), Expect = 4e-44
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 5/132 (3%)

Query: 41  PRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFR 99
                   + +K G  I +D  P R++      PGK G+A  R +      G        
Sbjct: 2   GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKP 61

Query: 100 AGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRL--NETDVGDKKKWLKEGMDCNL 157
               V+   + K+T Q           MD+ T+E   +  +     + +  LKEG++   
Sbjct: 62  TSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEY 121

Query: 158 LFWKG--KIIDF 167
               G  KI+  
Sbjct: 122 WETLGRIKIMRI 133

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136

 Score =  137 bits (346), Expect = 2e-41
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 40  FPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTF 98
            P     +   +KVG  + +DG P  +++    KPGK G A  R            E   
Sbjct: 5   MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVA 64

Query: 99  RAGITVEEADVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLL 158
                VE   + +   Q     G M   MDL T+E + L    + +  + L+ G +   +
Sbjct: 65  PTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETLELP---IPEGIEGLEPGGEVEYI 121

Query: 159 FWKGK 163
              G+
Sbjct: 122 EAVGQ 126

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Length = 167

 Score = 92.1 bits (228), Expect = 1e-23
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 41  PRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFR 99
              Y    + ++    + +   P ++++    K GK G A V     +  +G  +E    
Sbjct: 26  SATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSP 85

Query: 100 AGITVEEADVFKETKQFTYKDGSMFVFMDL--TTFEEVRLNETDVGDK-KKWLKEGMDCN 156
           +   +E   V +   Q    D      M++   T ++V+  E ++GD  +    EG D  
Sbjct: 86  STHNMEVPVVKRNEYQLLDIDDGFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLM 145

Query: 157 LLFWKG----KIIDF 167
           +           I F
Sbjct: 146 VTIISAMGEEAAISF 160

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Length = 138

 Score = 90.9 bits (225), Expect = 2e-23
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 8/132 (6%)

Query: 44  YAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGI 102
           +    + ++    + + G P +++E    K GK G A V     +  +G   E    +  
Sbjct: 5   FPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTH 64

Query: 103 TVEEADVFKETKQFTYKDGSMFVFM--DLTTFEEVRLNETDVGDK-KKWLKEGMDCNLLF 159
            ++  ++ +   Q           +       E++RL E D+G + ++    G +  +  
Sbjct: 65  NMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITV 124

Query: 160 WKG----KIIDF 167
                    +  
Sbjct: 125 LSAMTEEAAVAI 136

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Length = 167

 Score = 89.0 bits (220), Expect = 2e-22
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 10/139 (7%)

Query: 41  PRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFR 99
            + Y  S+ +I+ G +I +   P +V+E    K GK G A       +  +   +E    
Sbjct: 24  SKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 83

Query: 100 AGITVEEADVFKETKQFTYKDGSMFVFM---DLTTFEEVRLNETDVGDK--KKWLKEGMD 154
           +    +   V +   Q        FV +      T ++++L   D      +    EG D
Sbjct: 84  SSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKD 143

Query: 155 CNLLFWKG----KIIDFEV 169
             +         +I   + 
Sbjct: 144 IVVSVMSSMGEEQICAVKE 162

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Length = 174

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 16/143 (11%)

Query: 41  PRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFR 99
            + Y  ++  +K G  + ++G P +V++    K GK G A V     +  +G  +E    
Sbjct: 26  SKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAP 85

Query: 100 AGITVEEADVFKETKQFTYKDGSMFVFMDL---------TTFEEVRL-NETDVGDKKKW- 148
           +   VE   V   T        +    +            + E++ +  +  +  + K  
Sbjct: 86  STHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQ 145

Query: 149 LKEGMDCNLLFWKG----KIIDF 167
              G D  ++        +++  
Sbjct: 146 FDSGKDVLVVVVSAMGTEQVLQT 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
1yby_A	215	Translation elongation factor P; conserved hypothe	100.0
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	100.0
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	100.0
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	100.0
3a5z_B	191	EF-P, elongation factor P; aminoacyl-tRNA syntheta	100.0
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	100.0
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	100.0
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	100.0
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	100.0
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	100.0
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	100.0
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	100.0
1khi_A	176	HEX1; membrane sealing, peroxisomal target, struct	99.68

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}

Probab=100.00  E-value=2.5e-77  Score=517.52  Aligned_cols=189  Identities=47%  Similarity=0.785  Sum_probs=175.2

Q ss_pred             ceEEEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058           41 PRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD  120 (229)
Q Consensus        41 ~~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D  120 (229)
                      .|.+|++++|||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|++|+++|++|.|+++++++||||.|
T Consensus        27 ~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY~D  106 (215)
T 1yby_A           27 KAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYND  106 (215)
T ss_dssp             ----CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEE
T ss_pred             hCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEEeC
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecC
Q 027058          121 GSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDT  200 (229)
Q Consensus       121 gd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~Let  200 (229)
                      ||.|+|||+|||||++|+.+.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+|||
T Consensus       107 gd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~KpA~leT  186 (215)
T 1yby_A          107 GDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVET  186 (215)
T ss_dssp             TTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEEEEETT
T ss_pred             CCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCccEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058          201 GAVVNVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       201 G~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      |++|+||+||++||+|+||||||+|++||
T Consensus       187 G~~v~VP~FI~~Gd~I~VdT~~g~Y~~R~  215 (215)
T 1yby_A          187 GASIKVPLFVNKGDIIRIDTRTGEYMERV  215 (215)
T ss_dssp             SCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             CcEEEeCCcEeCCCEEEEECCCCeEeccC
Confidence            99999999999999999999999999997

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V

Probab=100.00  E-value=1.6e-76  Score=502.27  Aligned_cols=184  Identities=45%  Similarity=0.749  Sum_probs=182.7

Q ss_pred             EEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCCeE
Q 027058           45 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSMF  124 (229)
Q Consensus        45 ~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd~~  124 (229)
                      |+++|+||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|++|+++|++|.|+++|+++||||.|||.|
T Consensus         1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~   80 (184)
T 1ueb_A            1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM   80 (184)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE
T ss_pred             CcchhhcCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCCcEE
Q 027058          125 VFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTGAVV  204 (229)
Q Consensus       125 ~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG~~v  204 (229)
                      +|||+|||||++|+.+.+|++ +||+||++|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||++|
T Consensus        81 ~FMD~etyeq~~l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG~~v  159 (184)
T 1ueb_A           81 VFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVV  159 (184)
T ss_dssp             EEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEEEECCSSSCCSSSSCSEEEEEETTSCEE
T ss_pred             EEeeCCCceeEEcCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEcCCCEE
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccCeecCCEEEEEcCCCeeeecC
Q 027058          205 NVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       205 ~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      +||+||++||+|+||||||+|++||
T Consensus       160 ~VP~fi~~Gd~I~vdT~~g~Y~~R~  184 (184)
T 1ueb_A          160 QVPLFVEPGEVIKVDTRTGEYVGRA  184 (184)
T ss_dssp             EEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             EeCCcCcCCCEEEEECCCCeEeccC
Confidence            9999999999999999999999997

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.8e-76  Score=500.92  Aligned_cols=185  Identities=30%  Similarity=0.608  Sum_probs=181.5

Q ss_pred             EEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeCCe
Q 027058           44 YAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDGSM  123 (229)
Q Consensus        44 ~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dgd~  123 (229)
                      .|+++++||+|++|++||+||+|++++|+|||||+||+|+|||||+||+++|++|+++|++|.++++++++||||.||+.
T Consensus         3 ~m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~   82 (191)
T 3oyy_A            3 SMKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL   82 (191)
T ss_dssp             CCEEGGGCCTTCEEEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred             ccccHHhCCCCCEEEECCEEEEEEEEEeeeCCCCcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCceeeecCccchhhhhhccCCCCe--EEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCC
Q 027058          124 FVFMDLTTFEEVRLNETDVGDKKKWLKEGMD--CNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTG  201 (229)
Q Consensus       124 ~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~--v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG  201 (229)
                      |+||| |||||+++|++.+||+.+||+|||+  |++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||
T Consensus        83 ~~FMD-etyEq~~l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG  161 (191)
T 3oyy_A           83 YVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNG  161 (191)
T ss_dssp             EEEEE-TTCCEEEECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEEEEEEECCCCSCCCC--CEEEEEETTS
T ss_pred             EEEEe-cChhheeCChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCceEEEeCC
Confidence            99999 9999999999999999999999999  99999999999999999999999999999999999999999999999


Q ss_pred             cEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058          202 AVVNVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       202 ~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      ++||||+||++||+|+||||||+|++||
T Consensus       162 ~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~  189 (191)
T 3oyy_A          162 AELQVSAFCEIGDSIEIDTRTGEYKSRV  189 (191)
T ss_dssp             CEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             CEEEeCCeeeCCCEEEEECCCCeEhhhc
Confidence            9999999999999999999999999997

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}

Probab=100.00  E-value=7.1e-77  Score=507.06  Aligned_cols=188  Identities=43%  Similarity=0.764  Sum_probs=128.5

Q ss_pred             eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058           42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG  121 (229)
Q Consensus        42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg  121 (229)
                      .|+|+++++||+|++|++||+||+|++++|+|||||+||+|+|||||+||+++|++|+++|++|.|+++|+++||||.||
T Consensus         3 ~m~m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGKG~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dg   82 (191)
T 3tre_A            3 AMATHSTNEFRGGLKVMVDGDPCSIIDNEFVKPGKGQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDG   82 (191)
T ss_dssp             ---CEEGGGCCTTCEEEETTEEEEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECS
T ss_pred             eeEEEEHHHCCCCCEEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcC
Confidence            36689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCC
Q 027058          122 SMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTG  201 (229)
Q Consensus       122 d~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG  201 (229)
                      +.|+|||+|||||+++|++.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||
T Consensus        83 d~~~FMD~etyEq~~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG  162 (191)
T 3tre_A           83 EFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKITETEPGVRGDTATGGTKRAKLETG  162 (191)
T ss_dssp             SCEEEEESSSCCEEEECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC----------------------------
T ss_pred             CcEEEccCCchHheecchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCcCeEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058          202 AVVNVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       202 ~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      ++|+||+||++||+|+||||||+|++||
T Consensus       163 ~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~  190 (191)
T 3tre_A          163 AVVRVPLFLNEGEIIKVDTRRGEYVSRA  190 (191)
T ss_dssp             ----------------------------
T ss_pred             CEEEeCCeEcCCCEEEEECCCCeEeccc
Confidence            9999999999999999999999999997

>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}

Probab=100.00  E-value=2e-77  Score=510.44  Aligned_cols=188  Identities=47%  Similarity=0.821  Sum_probs=133.3

Q ss_pred             eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058           42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG  121 (229)
Q Consensus        42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg  121 (229)
                      +|+++++||||+|++|++||+||+|++++|+|||||+||+|+|+|||+||+++|++|+++|++|.|+++|+++||||.||
T Consensus         3 ~m~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dg   82 (191)
T 3a5z_B            3 HMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDG   82 (191)
T ss_dssp             ---CEESTTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECS
T ss_pred             ccceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCceEEEEEEEcCCCcccccCCCCcccEEecCC
Q 027058          122 SMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPITVQLTVVDVDPGLKGDTASGGSKPATLDTG  201 (229)
Q Consensus       122 d~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~~V~l~V~et~p~~kgdta~~~~K~A~LetG  201 (229)
                      |.|+|||+|||||++|+++.+||+.+||+|||+|++++|+|+||+|+||++|+|+|+||+|++|||||++++|||+||||
T Consensus        83 d~~~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V~~tep~~kGdta~~~~KpA~letG  162 (191)
T 3a5z_B           83 EFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTG  162 (191)
T ss_dssp             SCEEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCCC-----------------------
T ss_pred             CEEEEeeCCCCeEEEccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCCcccccCCCCccEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058          202 AVVNVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       202 ~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      ++|+||+||++||+|+||||||+|++||
T Consensus       163 ~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~  190 (191)
T 3a5z_B          163 AVVKVPLFVQIGEVIKVDTRSGEYVSRV  190 (191)
T ss_dssp             ----------------------------
T ss_pred             CEEEeCCcEeCCCEEEEECCCCeEeecc
Confidence            9999999999999999999999999997

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=9e-42  Score=276.53  Aligned_cols=125  Identities=21%  Similarity=0.253  Sum_probs=121.4

Q ss_pred             EEEEEccccCCccEEEECCcEEEEEEEeEeeCCCC-ceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058           43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKG-AAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG  121 (229)
Q Consensus        43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG-~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg  121 (229)
                      .+.+++++||+|++|++||+||+|++++|+||||| +||+|+++|||+||+++|.+|+++|++|.|+++++++||||.||
T Consensus         6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg   85 (136)
T 1bkb_A            6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG   85 (136)
T ss_dssp             CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred             EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence            57899999999999999999999999999999995 99999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCCCceeeecCccc-hhhhhhccCCCCeEEEEEECCeEEEE
Q 027058          122 SMFVFMDLTTFEEVRLNETD-VGDKKKWLKEGMDCNLLFWKGKIIDF  167 (229)
Q Consensus       122 d~~~FMD~etyEQi~v~~~~-lgd~~~fL~eG~~v~v~~~~g~~i~v  167 (229)
                      +.|+|||+|||||++|+.+. +|++.+||+||++|.+++|+|++.-+
T Consensus        86 ~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~  132 (136)
T 1bkb_A           86 DVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKII  132 (136)
T ss_dssp             SEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEE
T ss_pred             CEEEEEeCCCCeEEEeccccchhHHHhhCCCCCEEEEEEECCEEEEE
Confidence            99999999999999999999 99999999999999999999987644

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=9e-41  Score=271.44  Aligned_cols=124  Identities=22%  Similarity=0.284  Sum_probs=120.2

Q ss_pred             eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058           42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD  120 (229)
Q Consensus        42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D  120 (229)
                      ..+.+++++||+|++|++||+||+|++++|+|||| |+||+|+++|||+||+++|.+|+++|++|.|+++++++||||.|
T Consensus         3 ~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~d   82 (138)
T 1iz6_A            3 DKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAIT   82 (138)
T ss_dssp             CEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEC
T ss_pred             ceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEeC
Confidence            35789999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             CCeEEEecCCCceeeec--CccchhhhhhccCCCCeEEEEEECCeEE
Q 027058          121 GSMFVFMDLTTFEEVRL--NETDVGDKKKWLKEGMDCNLLFWKGKII  165 (229)
Q Consensus       121 gd~~~FMD~etyEQi~v--~~~~lgd~~~fL~eG~~v~v~~~~g~~i  165 (229)
                      |+.|+|||+|||||++|  |.+.+|++.+||+||++|.|+++.|+..
T Consensus        83 g~~~~fMD~etyeq~~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~  129 (138)
T 1iz6_A           83 PDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIK  129 (138)
T ss_dssp             SSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred             CCEEEEEeCCCCceEEeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence            99999999999999999  8899999999999999999999998854

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=269.73  Aligned_cols=120  Identities=13%  Similarity=0.183  Sum_probs=113.2

Q ss_pred             eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCCC-ceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058           42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKG-AAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD  120 (229)
Q Consensus        42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG-~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D  120 (229)
                      .++++++++||+|++|++||+||+|++++|+||||| +||+|+++|||+||+++|++|+++|++|.|+++|+++||||.|
T Consensus         3 ~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly~d   82 (138)
T 3cpf_A            3 ATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ   82 (138)
T ss_dssp             CEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEE
T ss_pred             ccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEec
Confidence            357999999999999999999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             CCeEEEecCCCceeee--cCccchhhhh-hccCCCCeEEEEEEC
Q 027058          121 GSMFVFMDLTTFEEVR--LNETDVGDKK-KWLKEGMDCNLLFWK  161 (229)
Q Consensus       121 gd~~~FMD~etyEQi~--v~~~~lgd~~-~fL~eG~~v~v~~~~  161 (229)
                      |+.|+|||+|||||++  +|.+.+|++. +||+||++|.|.+|.
T Consensus        83 g~~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~eg~~v~V~~~~  126 (138)
T 3cpf_A           83 DGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLS  126 (138)
T ss_dssp             TTEEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             CCEEEEEcCCCCeEeeecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence            9999999999999999  7999999999 899999999998883

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A

Probab=100.00  E-value=3.8e-39  Score=261.22  Aligned_cols=120  Identities=23%  Similarity=0.277  Sum_probs=116.5

Q ss_pred             EEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEeC
Q 027058           43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKDG  121 (229)
Q Consensus        43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~Dg  121 (229)
                      .+.+++++||+|++|++||+||+|++++|+|||| |+||+|+|+|||+||+++|.+|++++++|.|+++++++||||.||
T Consensus         8 t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg   87 (136)
T 2eif_A            8 TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMG   87 (136)
T ss_dssp             EEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEET
T ss_pred             eEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEecC
Confidence            4678999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEE
Q 027058          122 SMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKII  165 (229)
Q Consensus       122 d~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i  165 (229)
                      +.|+|||+|||||++|+.+  |++.+ |+||++|++++|+|+..
T Consensus        88 ~~~~fMD~etyeq~~l~~~--gd~~~-l~e~~~v~v~~~~G~~~  128 (136)
T 2eif_A           88 DMVQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQYK  128 (136)
T ss_dssp             TEEEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTEEE
T ss_pred             CEEEEEeCCCceEEEecCC--Cchhh-CCCCCEEEEEEECCEEE
Confidence            9999999999999999998  88889 99999999999999865

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A

Probab=100.00  E-value=1.1e-37  Score=261.98  Aligned_cols=120  Identities=20%  Similarity=0.262  Sum_probs=112.5

Q ss_pred             eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058           42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD  120 (229)
Q Consensus        42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D  120 (229)
                      .++++++++||+|++|++||+||+|++++|+|||| |+||||+++|||+||+++|.+|++++++|.|.|+|+++||||.|
T Consensus        27 ~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~kve~~~Ver~~~QyLY~d  106 (174)
T 1x6o_A           27 KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQ  106 (174)
T ss_dssp             CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEE
T ss_pred             eeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEEec
Confidence            35899999999999999999999999999999999 59999999999999999999999999999999999999999999


Q ss_pred             CC-------eEEEecCCCceeeec--Ccc-chhhh-hhccCCCCeEEEEEEC
Q 027058          121 GS-------MFVFMDLTTFEEVRL--NET-DVGDK-KKWLKEGMDCNLLFWK  161 (229)
Q Consensus       121 gd-------~~~FMD~etyEQi~v--~~~-~lgd~-~~fL~eG~~v~v~~~~  161 (229)
                      ||       .|+|||+|+|||+.|  |.+ .||++ .+||+||++|.|.+|.
T Consensus       107 gd~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~  158 (174)
T 1x6o_A          107 ANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS  158 (174)
T ss_dssp             CCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCcccccccEEEEEcCCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence            99       999999999999999  677 89999 8999999999999984

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-38  Score=264.07  Aligned_cols=120  Identities=19%  Similarity=0.285  Sum_probs=116.1

Q ss_pred             eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058           42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD  120 (229)
Q Consensus        42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D  120 (229)
                      .++.|++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+++|+++||||.|
T Consensus        27 ~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~kve~~~ver~~~QyLY~d  106 (167)
T 3er0_A           27 ATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDID  106 (167)
T ss_dssp             CCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCEEEEECCCCT
T ss_pred             ceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCccccceEEEeeEEEEEEc
Confidence            46899999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             CCeEEEec--CCCceeeecCccchhhhh-hccCCCCeEEEEEEC
Q 027058          121 GSMFVFMD--LTTFEEVRLNETDVGDKK-KWLKEGMDCNLLFWK  161 (229)
Q Consensus       121 gd~~~FMD--~etyEQi~v~~~~lgd~~-~fL~eG~~v~v~~~~  161 (229)
                      |+.|+|||  .+||||+.||++.||+++ .||+||++|.|++|+
T Consensus       107 g~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~  150 (167)
T 3er0_A          107 DGFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIIS  150 (167)
T ss_dssp             TTTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred             CCEEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence            99999999  899999999999999988 689999999999884

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-36  Score=253.48  Aligned_cols=120  Identities=17%  Similarity=0.204  Sum_probs=112.7

Q ss_pred             eEEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeEEEEEe
Q 027058           42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQFTYKD  120 (229)
Q Consensus        42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~qylY~D  120 (229)
                      .++.|++++||+|++|++||+||+|++++|+|||| |+||+|+++|||+||+++|.+|++++++|.|.|+++++||||.|
T Consensus        25 ~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~kve~~~ver~~~QyLY~d  104 (167)
T 3hks_A           25 KTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDIT  104 (167)
T ss_dssp             CEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEEC
T ss_pred             ccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCEEEeeeEEEEEEEEEEEC
Confidence            46899999999999999999999999999999999 99999999999999999999999999999999999999999996


Q ss_pred             C-CeEEEecCCCceee--ecCcc-chhhhh-hccCCCCeEEEEEEC
Q 027058          121 G-SMFVFMDLTTFEEV--RLNET-DVGDKK-KWLKEGMDCNLLFWK  161 (229)
Q Consensus       121 g-d~~~FMD~etyEQi--~v~~~-~lgd~~-~fL~eG~~v~v~~~~  161 (229)
                      + +.|+|||++||||+  .||.+ .|++++ .||+||++|.|.+|+
T Consensus       105 ~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~  150 (167)
T 3hks_A          105 EDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS  150 (167)
T ss_dssp             TTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence            5 68999999999996  56677 899976 899999999988884

>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5

Probab=99.68  E-value=1e-15  Score=128.08  Aligned_cols=118  Identities=14%  Similarity=0.114  Sum_probs=100.9

Q ss_pred             CceEEEEEccccCCccEEEECCcEEEEEEEeEe-eCCCCceEEEEEEEECCCCCEEEEEecCC--------CeEEEeeee
Q 027058           40 FPRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHV-KPGKGAAFVRTKLRNYMSGTTVERTFRAG--------ITVEEADVF  110 (229)
Q Consensus        40 ~~~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~-kpGKG~A~vriklknL~TG~~~e~tf~s~--------dkve~~~ve  110 (229)
                      -+..+.+++++||+|.+|+++|+||+|++++.+ ||||=    ++...|||||+|.|...+++        ++++.|.++
T Consensus        29 as~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm~VPvVk  104 (176)
T 1khi_A           29 ASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFK  104 (176)
T ss_dssp             SCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEEECCE
T ss_pred             CCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce----EEEEEEccCCcEeEEeccccCCCcccccceeccceeE
Confidence            335789999999999999999999999999999 89994    89999999999999999999        899999996


Q ss_pred             eeeeEEEEEeCCeEEEecCCCceeeec--Cc-cchhhhh-hccCCCCe---EEEEEECCe
Q 027058          111 KETKQFTYKDGSMFVFMDLTTFEEVRL--NE-TDVGDKK-KWLKEGMD---CNLLFWKGK  163 (229)
Q Consensus       111 rk~~qylY~Dgd~~~FMD~etyEQi~v--~~-~~lgd~~-~fL~eG~~---v~v~~~~g~  163 (229)
                        ++|++..+++..++||.++|+...|  |. +.|++.+ ..+.+|.+   |.++-..|+
T Consensus       105 --~yQlldI~dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~  162 (176)
T 1khi_A          105 --QYRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGR  162 (176)
T ss_dssp             --EEEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTE
T ss_pred             --EEEEEEEcCCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCc
Confidence              9999999999999999988766554  54 4466544 45678876   777777676

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1ueba3	58	b.40.4.5 (A:127-184) Elongation factor P middle an	2e-26
d1ueba1	63	b.34.5.2 (A:1-63) Elongation factor P N-terminal d	2e-23
d1ueba2	63	b.40.4.5 (A:64-126) Elongation factor P middle and	6e-20
d1bkba1	71	b.34.5.2 (A:4-74) Eukaryotic initiation translatio	1e-15
d2eifa1	73	b.34.5.2 (A:1-73) Eukaryotic initiation translatio	4e-15
d1iz6a1	69	b.34.5.2 (A:2-70) Eukaryotic initiation translatio	6e-15

>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 58

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 94.6 bits (236), Expect = 2e-26
 Identities = 40/57 (70%), Positives = 47/57 (82%)

Query: 173 VQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA 229
           V+L VVD  PG++GDT SGGSKPATL+TGAVV VPLFV  G+ I VDTRTG+Y+ RA
Sbjct: 2   VELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 58

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 87.0 bits (216), Expect = 2e-23
 Identities = 24/60 (40%), Positives = 38/60 (63%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEE 106
           S  D++ G+ +++DG  W  +E+ H K G+G A V  K +N  +G TVERTF +G  +E+
Sbjct: 3   SVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLED 62

>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 78.1 bits (193), Expect = 6e-20
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 110 FKETK--QFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDF 167
           + ET+  Q+ Y +G   VFMDL T+E+  +  + V    ++ KEGM      ++G+ I  
Sbjct: 1   YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVG-AEFFKEGMTALGDMYEGQPIKV 59

Query: 168 EVP 170
             P
Sbjct: 60  TPP 62

>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 67.2 bits (164), Expect = 1e-15
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVE 105
            + ++K GS + +DG P RV+E    K GK G+A  R        G     +      VE
Sbjct: 10  EAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVE 69

>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 65.6 bits (160), Expect = 4e-15
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 41  PRIYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFR 99
           P     +   +KVG  + +DG P  +++    KPGK G A  R            E    
Sbjct: 5   PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAP 64

Query: 100 AGITVE 105
               VE
Sbjct: 65  TSSKVE 70

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 65.2 bits (159), Expect = 6e-15
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 47  SSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVE 105
             + +K G  I +D  P R++      PGK G+A  R +      G            V+
Sbjct: 7   QVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVD 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1ueba3	58	Elongation factor P middle and C-terminal domains	99.95
d1ueba2	63	Elongation factor P middle and C-terminal domains	99.89
d1ueba1	63	Elongation factor P N-terminal domain {Thermus the	99.89
d1iz6a1	69	Eukaryotic initiation translation factor 5a (eIF5a	99.86
d1bkba1	71	Eukaryotic initiation translation factor 5a (eIF5a	99.86
d2eifa1	73	Eukaryotic initiation translation factor 5a (eIF5a	99.86
d1x6oa1	68	Eukaryotic initiation translation factor 5a (eIF5a	99.65
d1khia1	76	Woronin body major protein (Hex1) {Filamentous fun	99.09
d1bkba2	65	C-terminal domain of eukaryotic initiation transla	98.59
d2eifa2	59	C-terminal domain of eukaryotic initiation transla	98.56
d1iz6a2	67	C-terminal domain of eukaryotic initiation transla	98.53
d1x6oa2	79	C-terminal domain of eukaryotic initiation transla	85.0
d1khia2	71	C-terminal domain of eIF5a homologue (Hex1) {Filam	83.89

>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.95  E-value=1.1e-28  Score=170.75  Aligned_cols=57  Identities=70%  Similarity=1.087  Sum_probs=56.4

Q ss_pred             EEEEEEEcCCCcccccCCCCcccEEecCCcEEEcccCeecCCEEEEEcCCCeeeecC
Q 027058          173 VQLTVVDVDPGLKGDTASGGSKPATLDTGAVVNVPLFVNIGDEILVDTRTGQYMTRA  229 (229)
Q Consensus       173 V~l~V~et~p~~kgdta~~~~K~A~LetG~~v~VP~FI~~Gd~I~V~T~~g~Y~~R~  229 (229)
                      |+|+|+||+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++||
T Consensus         2 V~l~V~etep~vKG~Ta~~~~K~a~letG~~i~VP~FI~~Gd~I~VdT~~g~Y~~RA   58 (58)
T d1ueba3           2 VELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA   58 (58)
T ss_dssp             EEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             EEEEEEECCCCcccccccCCcceEEEcCCCEEEcCCcccCCCEEEEECCCCeEeccC
Confidence            799999999999999999999999999999999999999999999999999999997

>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.89  E-value=9.1e-24  Score=148.55  Aligned_cols=63  Identities=30%  Similarity=0.485  Sum_probs=60.7

Q ss_pred             eeeeeeeEEEEEeCCeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeEEEEECCc
Q 027058          108 DVFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKIIDFEVPI  171 (229)
Q Consensus       108 ~verk~~qylY~Dgd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~i~v~lP~  171 (229)
                      .|++|++||||.||+.|+|||++||||+.++++.+|++ +||+||++|.+.+|+|+||+|+||+
T Consensus         1 ~ve~~~~qyLY~dgd~~~FMd~etyEQi~v~~~~i~~~-~~L~eg~~~~v~~~~~~~i~i~lPT   63 (63)
T d1ueba2           1 YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPT   63 (63)
T ss_dssp             CEEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCS
T ss_pred             CccceeEEEEEeCCCeEEEEeCCCccEEEcCHHHcChh-ccccCCCEEEEEEECCEEEEEECCC
Confidence            37999999999999999999999999999999999986 8999999999999999999999996

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.89  E-value=1.4e-23  Score=147.51  Aligned_cols=63  Identities=38%  Similarity=0.719  Sum_probs=61.6

Q ss_pred             EEEccccCCccEEEECCcEEEEEEEeEeeCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEe
Q 027058           45 AFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEA  107 (229)
Q Consensus        45 ~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~  107 (229)
                      |++++|||+|++|++||+||+|++++|+|||||+|++|+|||||.||+++|.+|+++|++|.+
T Consensus         1 Mi~a~elkkG~~i~~~g~~~~V~~~~~~kpgkg~a~v~~Klknl~tG~~~e~tf~~~dkve~V   63 (63)
T d1ueba1           1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLEDI   63 (63)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCEEEEEEETTCEEEEC
T ss_pred             CCcHHHCCCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEEcCCCCEEEEEECCCCEeeeC
Confidence            789999999999999999999999999999999999999999999999999999999999974

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=6.6e-22  Score=141.21  Aligned_cols=64  Identities=22%  Similarity=0.323  Sum_probs=62.6

Q ss_pred             EEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEe
Q 027058           44 YAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEA  107 (229)
Q Consensus        44 ~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~  107 (229)
                      .++++++||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++|++|.|
T Consensus         4 ~~i~~~~lkkG~~i~~~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i~tG~~~e~~~~s~d~vevP   68 (69)
T d1iz6a1           4 TKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVP   68 (69)
T ss_dssp             EEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEE
T ss_pred             EEEEHhHccCCCEEEECCEEEEEEEEEEEcCCCcCccEEEEEEEEcccCCEEEEEEcCCCEEecc
Confidence            589999999999999999999999999999998 9999999999999999999999999999987

>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.86  E-value=8.1e-22  Score=141.49  Aligned_cols=64  Identities=28%  Similarity=0.389  Sum_probs=62.0

Q ss_pred             EEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEe
Q 027058           44 YAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEA  107 (229)
Q Consensus        44 ~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~  107 (229)
                      .+|+++|||+|++|++||+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++|++|.|
T Consensus         7 ~~i~a~~lKkG~~i~~~g~p~~V~~~~~~kpgk~G~a~~r~k~k~i~tG~~~e~~~~s~d~vevP   71 (71)
T d1bkba1           7 KYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVP   71 (71)
T ss_dssp             EEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEC
T ss_pred             eEEEHHHccCCCEEEECCEEEEEEEEEEECCCCCCccEEEEEEEEeecCcEEEEEEcCCCEEeCC
Confidence            469999999999999999999999999999998 9999999999999999999999999999975

>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.86  E-value=1.3e-21  Score=141.07  Aligned_cols=65  Identities=25%  Similarity=0.323  Sum_probs=63.1

Q ss_pred             EEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEe
Q 027058           43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEA  107 (229)
Q Consensus        43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~  107 (229)
                      +.+++++|||+|++|++||+||+|++++|+|||| |+|++|++++||+||++.|.+|+++|++|.|
T Consensus         7 ~~~i~~~~lKkG~~i~~~g~p~~V~e~~~~kpGk~G~A~~r~k~kni~tG~~~e~~~~s~d~vevP   72 (73)
T d2eifa1           7 TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVP   72 (73)
T ss_dssp             EEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEE
T ss_pred             ceEEEHHHccCCCEEEECCEEEEEEEEEEECCCCcccEEEEEEEEEEecCcEEEEEEcCCCEEecc
Confidence            4689999999999999999999999999999999 8899999999999999999999999999987

>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=99.65  E-value=5.6e-16  Score=109.59  Aligned_cols=65  Identities=25%  Similarity=0.426  Sum_probs=60.1

Q ss_pred             EEEEEccccCCccEEEECCcEEEEEEEeEeeCCC-CceEEEEEEEECCCCCEEEEEecCCCeEEEe
Q 027058           43 IYAFSSNDIKVGSNIEVDGAPWRVLEFLHVKPGK-GAAFVRTKLRNYMSGTTVERTFRAGITVEEA  107 (229)
Q Consensus        43 ~~~i~a~dirkG~~I~~dG~py~Vv~~~~~kpGK-G~A~vriklknL~TG~~~e~tf~s~dkve~~  107 (229)
                      ++.+++++||+|.+|+++|+||+|++++.+|||| |+|++++...+|+||++.+...+++++++.|
T Consensus         2 T~p~~~~~lkkG~yv~i~g~PCkI~~istSk~GKHGhaK~~i~~idIFtgkK~~~v~P~~~~v~vP   67 (68)
T d1x6oa1           2 TYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVP   67 (68)
T ss_dssp             EEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEE
T ss_pred             ceeeEcceeeECCEEEECCEeeEEEEEeecCCCcccccEEEEEEEEcccCCEEEEEccCCceeecC
Confidence            4689999999999999999999999999999999 9999999999999999999999999999986

>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

Probab=99.09  E-value=1.5e-10  Score=82.53  Aligned_cols=70  Identities=13%  Similarity=0.143  Sum_probs=62.3

Q ss_pred             eEEEEEccccCCccEEEECCcEEEEEEEeEe-eCCCCceEEEEEEEECCCCCEEEEEecCCCeEEEeeeeeeeeE
Q 027058           42 RIYAFSSNDIKVGSNIEVDGAPWRVLEFLHV-KPGKGAAFVRTKLRNYMSGTTVERTFRAGITVEEADVFKETKQ  115 (229)
Q Consensus        42 ~~~~i~a~dirkG~~I~~dG~py~Vv~~~~~-kpGKG~A~vriklknL~TG~~~e~tf~s~dkve~~~verk~~q  115 (229)
                      ..+.+++++||+|.+++++|+||+|++++.+ ||||=    ++...||+||++.|..-+.++....+.+++.-.|
T Consensus         5 ~T~p~~~~~lkkg~yv~i~g~PCkIv~istS~ktGKH----~~vgidIFtgkk~ed~~~vs~~~p~~vvq~~~g~   75 (76)
T d1khia1           5 QTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLGP   75 (76)
T ss_dssp             CEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEEE
T ss_pred             cceeEEccceeeCCEEEECCcccEEEEEeeccCCCce----eEEEEeeccCcEeeecccccCCCCceeeeeeecC
Confidence            4689999999999999999999999999998 89992    7899999999999999999888888877776443

>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.59  E-value=7e-08  Score=66.73  Aligned_cols=56  Identities=18%  Similarity=0.254  Sum_probs=48.2

Q ss_pred             eeeeeeEEEEEeCCeEEEecCCCceeeecCccch-hhhhhccCCCCeEEEEEECCeE
Q 027058          109 VFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDV-GDKKKWLKEGMDCNLLFWKGKI  164 (229)
Q Consensus       109 verk~~qylY~Dgd~~~FMD~etyEQi~v~~~~l-gd~~~fL~eG~~v~v~~~~g~~  164 (229)
                      +||+..|.+...||..++||+||||.+++|.+.. .+...-|++|.+|..|..-|+.
T Consensus         2 IeK~~aQVlsi~Gd~vq~MD~etyetfelpm~~~~ee~~~~l~~G~eVeywe~mGr~   58 (65)
T d1bkba2           2 IEKFTAQILSVSGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRY   58 (65)
T ss_dssp             CEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEE
T ss_pred             ccccceeEEEEcCCeEEEeecCcceeEEecCCCCChHHHhccCCCCEEEEEeecCcE
Confidence            7999999999999999999999999999985433 3345569999999999888874

>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.56  E-value=8e-08  Score=65.28  Aligned_cols=53  Identities=23%  Similarity=0.264  Sum_probs=45.7

Q ss_pred             eeeeeeEEEEEeCCeEEEecCCCceeeecCccchhhhhhccCCCCeEEEEEECCeE
Q 027058          109 VFKETKQFTYKDGSMFVFMDLTTFEEVRLNETDVGDKKKWLKEGMDCNLLFWKGKI  164 (229)
Q Consensus       109 verk~~qylY~Dgd~~~FMD~etyEQi~v~~~~lgd~~~fL~eG~~v~v~~~~g~~  164 (229)
                      +||+..|.+...||..++||+||||.+++|.+.   ...-|++|.+|..+...|+-
T Consensus         1 IeKk~aQVlsi~G~~vq~MD~etyetf~l~ipe---~~~~l~~G~eVeY~e~mGr~   53 (59)
T d2eifa2           1 IDRRKGQVLAIMGDMVQIMDLQTYETLELPIPE---GIEGLEPGGEVEYIEAVGQY   53 (59)
T ss_dssp             EEEEEEEEEEEETTEEEEEETTTCCEEEEECCS---CCTTCSTTCEEEEEEETTEE
T ss_pred             CccceeEEEEEcCCeEEEeeCCcceeEEEeCcc---hhccCCCCCEEEEeeccCcE
Confidence            689999999999999999999999999998542   12239999999999888874

>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.53  E-value=1.2e-07  Score=65.90  Aligned_cols=56  Identities=25%  Similarity=0.318  Sum_probs=48.3

Q ss_pred             eeeeeeEEEEEeCCeEEEecCCCceeeecCccc-h-hhhhhccCCCCeEEEEEECCeE
Q 027058          109 VFKETKQFTYKDGSMFVFMDLTTFEEVRLNETD-V-GDKKKWLKEGMDCNLLFWKGKI  164 (229)
Q Consensus       109 verk~~qylY~Dgd~~~FMD~etyEQi~v~~~~-l-gd~~~fL~eG~~v~v~~~~g~~  164 (229)
                      |+|+..|.+...||..++||+||||.+++|.+. + .+...-|.+|.+|.+|...|+-
T Consensus         1 IeKk~aQVlsi~Gd~vQ~MD~etyeTfelpi~~~v~ee~~~~l~~G~eVeYwe~mGr~   58 (67)
T d1iz6a2           1 IDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRI   58 (67)
T ss_dssp             CEEEEEEEEEECSSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEE
T ss_pred             CccceeEEEEEcCCeEEEeecCCceeEEEecCCCccHHHHhccCCCCEEEEEeecCcE
Confidence            689999999999999999999999999998532 3 3456679999999999888874

>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=85.00  E-value=0.89  Score=31.31  Aligned_cols=59  Identities=15%  Similarity=0.185  Sum_probs=40.0

Q ss_pred             eeeeeeEEEEEeCC-------eEEEecC--CCceeeecC-ccchhhhhh-ccCCCCe--EEEEEECC--eEEEE
Q 027058          109 VFKETKQFTYKDGS-------MFVFMDL--TTFEEVRLN-ETDVGDKKK-WLKEGMD--CNLLFWKG--KIIDF  167 (229)
Q Consensus       109 verk~~qylY~Dgd-------~~~FMD~--etyEQi~v~-~~~lgd~~~-fL~eG~~--v~v~~~~g--~~i~v  167 (229)
                      +.|.+||.+-.++|       ...+|+.  ++-|.+.+| ...++...+ -..+|..  |.|+.--|  +++++
T Consensus         1 Vkr~eYqlidI~~d~d~s~dGflsLm~d~G~treDlkLP~d~elg~~I~~~f~~gkdl~VtVlsAmGEE~iia~   74 (79)
T d1x6oa2           1 VKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVSAMGTEQVLQT   74 (79)
T ss_dssp             CEEEEEEEEEEECCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             CccceeEEEeeccCCccCCCcEEEEEcCCCCcccccCCCCchHHHHHHHHHHhCCCcEEEEEehhCCccceeee
Confidence            46889999988754       5579987  688999997 456777443 3366655  55555544  35554

>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eIF5a homologue (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

Probab=83.89  E-value=2.3  Score=28.52  Aligned_cols=54  Identities=9%  Similarity=0.108  Sum_probs=39.1

Q ss_pred             eeeEEEEEeCCeEEEecC--CCceeeec-Cccchhhhh-hccCCCC---eEEEEEECCeEE
Q 027058          112 ETKQFTYKDGSMFVFMDL--TTFEEVRL-NETDVGDKK-KWLKEGM---DCNLLFWKGKII  165 (229)
Q Consensus       112 k~~qylY~Dgd~~~FMD~--etyEQi~v-~~~~lgd~~-~fL~eG~---~v~v~~~~g~~i  165 (229)
                      |+||.+..|++...+||.  ++-|++.+ |.+.|+... .-..+|.   -|.|+...|+-.
T Consensus         2 keYqlidIdDG~lsLM~e~G~~keDlkv~~~~el~~~I~~~F~~gkd~v~VtV~samGeE~   62 (71)
T d1khia2           2 KQYRVLDMQDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREM   62 (71)
T ss_dssp             EEEEEEEEETTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEE
T ss_pred             ceEEEEEeeCCeEEEEcCCCCccccccCCChhHHHHHHHHHHHcCCCcEEEEEEccCCEEe
Confidence            689999998888889996  57899997 666777644 3446663   267777776633